Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073282.t1 | XP_003610101.2 | 98.3 | 236 | 4 | 0 | 1 | 236 | 60 | 295 | 1.10E-131 | 479.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073282.t1 | Q6PQQ3 | 67.1 | 252 | 46 | 5 | 16 | 236 | 91 | 336 | 1.2e-84 | 314.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073282.t1 | G7JVD9 | 98.3 | 236 | 4 | 0 | 1 | 236 | 60 | 295 | 8.1e-132 | 479.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene073282 | -0.802183 | 6.33E-49 | -1.69E-46 |
| MS.gene050496 | MS.gene073282 | -0.821035 | 5.00E-53 | -1.69E-46 |
| MS.gene050504 | MS.gene073282 | -0.802072 | 6.67E-49 | -1.69E-46 |
| MS.gene050518 | MS.gene073282 | -0.806889 | 6.61E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene073282 | -0.800878 | 1.17E-48 | -1.69E-46 |
| MS.gene050612 | MS.gene073282 | -0.812614 | 3.88E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene073282 | -0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene073282 | -0.802811 | 4.70E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene073282 | -0.811547 | 6.63E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene073282 | -0.816446 | 5.51E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene073282 | -0.804412 | 2.19E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene073282 | -0.820337 | 7.24E-53 | -1.69E-46 |
| MS.gene058334 | MS.gene073282 | 0.827547 | 1.47E-54 | -1.69E-46 |
| MS.gene059699 | MS.gene073282 | 0.806129 | 9.56E-50 | -1.69E-46 |
| MS.gene059701 | MS.gene073282 | 0.817293 | 3.56E-52 | -1.69E-46 |
| MS.gene059703 | MS.gene073282 | 0.822143 | 2.77E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene073282 | -0.809042 | 2.30E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene073282 | -0.815501 | 8.95E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene073282 | -0.806777 | 6.97E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene073282 | -0.811926 | 5.48E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 73 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTGCTGCTCTCAAGTAC+TGG | 0.314872 | 8.1:+20242659 | MS.gene073282:CDS |
| AAGGTAGAGGTCTTTGTTTC+CGG | 0.318164 | 8.1:-20243258 | None:intergenic |
| GGAGATATGAAGCACATCTA+TGG | 0.326305 | 8.1:+20241272 | MS.gene073282:CDS |
| CTTGTGGCTGCCGGTGAATA+TGG | 0.331498 | 8.1:-20240797 | None:intergenic |
| AACGACCACTACCAACTTTC+CGG | 0.338959 | 8.1:+20242687 | MS.gene073282:CDS |
| CACAAGTTCGAGGACTTCTT+AGG | 0.357176 | 8.1:+20240814 | MS.gene073282:CDS |
| GTTGCGGCGGCTGTTCTTGT+TGG | 0.387124 | 8.1:-20240850 | None:intergenic |
| CCTGGTGACACCGCGATAGA+TGG | 0.390623 | 8.1:-20241043 | None:intergenic |
| ATCAATCTCCTTCTCATAGT+TGG | 0.408692 | 8.1:-20242834 | None:intergenic |
| ACAATAGCTGCTTGCTTCCC+TGG | 0.422931 | 8.1:+20240940 | MS.gene073282:CDS |
| TTGCCTGCCATCGGCCATGC+TGG | 0.430696 | 8.1:-20243220 | None:intergenic |
| GGTTCGGTGGGGTAGCCACC+AGG | 0.431604 | 8.1:-20240958 | None:intergenic |
| AGGTTCGGAGTTTGGTTCGG+TGG | 0.444923 | 8.1:-20240971 | None:intergenic |
| GCAAGAATAGGCAGAGTTGC+CGG | 0.451955 | 8.1:+20243239 | MS.gene073282:CDS |
| TAATTTAGGTGGCTATGATA+AGG | 0.452771 | 8.1:+20242612 | MS.gene073282:intron |
| GGTTCGGAGTTTGGTTCGGT+GGG | 0.458866 | 8.1:-20240970 | None:intergenic |
| TTGAGGTTCGGAGTTTGGTT+CGG | 0.459991 | 8.1:-20240974 | None:intergenic |
| TCTTGCTGCTCTCAAGTACT+GGG | 0.460585 | 8.1:+20242660 | MS.gene073282:CDS |
| GGCTGTTCTTGTTGGTGCAA+CGG | 0.461915 | 8.1:-20240842 | None:intergenic |
| CCATCTATCGCGGTGTCACC+AGG | 0.475525 | 8.1:+20241043 | MS.gene073282:CDS |
| GTTCCTCCATCTGTTGCCTC+TGG | 0.480278 | 8.1:-20240763 | None:intergenic |
| GTCCTCGAACTTGTGGCTGC+CGG | 0.496373 | 8.1:-20240806 | None:intergenic |
| GGTGAATATGGAGAGGTTTG+TGG | 0.510555 | 8.1:-20240785 | None:intergenic |
| GGCCGATGGCAGGCAAGAAT+AGG | 0.512416 | 8.1:+20243227 | MS.gene073282:CDS |
| TGCCTCTGGTGAAGCTTCCA+CGG | 0.528484 | 8.1:-20240749 | None:intergenic |
| GAAAACTGCTGAAGCTGTGT+GGG | 0.532869 | 8.1:-20240880 | None:intergenic |
| CCACCAGCATGGCCGATGGC+AGG | 0.533190 | 8.1:+20243217 | MS.gene073282:CDS |
| TACTGAAAGTGCCAAGGTAG+AGG | 0.534747 | 8.1:-20243271 | None:intergenic |
| CTAAGAAGTCCTCGAACTTG+TGG | 0.537216 | 8.1:-20240813 | None:intergenic |
| CTGTGTGGGTGCGCACGTTG+CGG | 0.540382 | 8.1:-20240866 | None:intergenic |
| CCTGCCATCGGCCATGCTGG+TGG | 0.544113 | 8.1:-20243217 | None:intergenic |
| TGCCTATTCTTGCCTGCCAT+CGG | 0.545171 | 8.1:-20243229 | None:intergenic |
| GGAATTATATATATCATTGT+CGG | 0.547335 | 8.1:-20240905 | None:intergenic |
| GAGATATGAAGCACATCTAT+GGG | 0.559005 | 8.1:+20241273 | MS.gene073282:CDS |
| AGGGAAGGACAAAGTAGGAA+AGG | 0.559779 | 8.1:+20241310 | MS.gene073282:CDS |
| GTACAAACTTACCGGAAAGT+TGG | 0.561227 | 8.1:-20242698 | None:intergenic |
| CAATTTACAGAGGGGTAACA+AGG | 0.562932 | 8.1:+20243048 | MS.gene073282:CDS |
| TGTGGGTGCGCACGTTGCGG+CGG | 0.563289 | 8.1:-20240863 | None:intergenic |
| CACCGGCAGCCACAAGTTCG+AGG | 0.568522 | 8.1:+20240804 | MS.gene073282:CDS |
| GGAAAGTTGGTAGTGGTCGT+TGG | 0.570366 | 8.1:-20242685 | None:intergenic |
| GGAAACAAAGACCTCTACCT+TGG | 0.572572 | 8.1:+20243260 | MS.gene073282:CDS |
| AAGAGTAGTGGTTTCTCAAG+AGG | 0.576512 | 8.1:+20243020 | MS.gene073282:CDS |
| GATGGAGGTGCGTTGTCCGA+AGG | 0.579181 | 8.1:-20241025 | None:intergenic |
| GCTTCACCAGAGGCAACAGA+TGG | 0.579683 | 8.1:+20240757 | MS.gene073282:CDS |
| TCAGATTTCCAACTATGAGA+AGG | 0.583626 | 8.1:+20242826 | MS.gene073282:intron |
| TATGGGACAATAGTTGCAGA+AGG | 0.584131 | 8.1:+20241290 | MS.gene073282:CDS |
| GACACCACCAGCATGGCCGA+TGG | 0.584738 | 8.1:+20243213 | MS.gene073282:intron |
| GACAATAGTTGCAGAAGGGA+AGG | 0.585408 | 8.1:+20241295 | MS.gene073282:CDS |
| CAAAGTAGGAAAGGAAGACA+AGG | 0.595973 | 8.1:+20241319 | MS.gene073282:CDS |
| GCAGAAGGGAAGGACAAAGT+AGG | 0.597553 | 8.1:+20241305 | MS.gene073282:CDS |
| GTTCGGAGTTTGGTTCGGTG+GGG | 0.599227 | 8.1:-20240969 | None:intergenic |
| TCATGTTATAGGAAGAGTAG+TGG | 0.600719 | 8.1:+20243008 | MS.gene073282:intron |
| GTTCGGTGGGGTAGCCACCA+GGG | 0.604192 | 8.1:-20240957 | None:intergenic |
| ATTATATATATCATTGTCGG+TGG | 0.604777 | 8.1:-20240902 | None:intergenic |
| GAGGAGCATCAATTTACAGA+GGG | 0.606917 | 8.1:+20243039 | MS.gene073282:CDS |
| AATTTGTTGCTTCTCTACGA+AGG | 0.609124 | 8.1:+20242882 | MS.gene073282:CDS |
| ACAAACCTCTCCATATTCAC+CGG | 0.611418 | 8.1:+20240787 | MS.gene073282:CDS |
| TCACCAGAGGCAACAGATGG+AGG | 0.617655 | 8.1:+20240760 | MS.gene073282:CDS |
| TCCAGGAAGCAGCAACGCCG+TGG | 0.632938 | 8.1:+20240732 | None:intergenic |
| CGCCGTGGAAGCTTCACCAG+AGG | 0.633581 | 8.1:+20240747 | MS.gene073282:CDS |
| GGAAAACTGCTGAAGCTGTG+TGG | 0.638121 | 8.1:-20240881 | None:intergenic |
| TGGTGCAGACACCACCAGCA+TGG | 0.647953 | 8.1:+20243206 | MS.gene073282:intron |
| ACTTACCGGAAAGTTGGTAG+TGG | 0.649056 | 8.1:-20242692 | None:intergenic |
| ATGGGACAATAGTTGCAGAA+GGG | 0.651127 | 8.1:+20241291 | MS.gene073282:CDS |
| GCGTTGTCCGAAGGTATCAA+CGG | 0.652510 | 8.1:-20241016 | None:intergenic |
| AGTACATACTGAAAGTGCCA+AGG | 0.656101 | 8.1:-20243277 | None:intergenic |
| GGTGACACCGCGATAGATGG+AGG | 0.661765 | 8.1:-20241040 | None:intergenic |
| ATAGCTGCTTGCTTCCCTGG+TGG | 0.677407 | 8.1:+20240943 | MS.gene073282:CDS |
| CTTGCTGCTCTCAAGTACTG+GGG | 0.677546 | 8.1:+20242661 | MS.gene073282:CDS |
| GGCTGCCGGTGAATATGGAG+AGG | 0.695158 | 8.1:-20240792 | None:intergenic |
| CAACGCACCTCCATCTATCG+CGG | 0.695636 | 8.1:+20241033 | MS.gene073282:CDS |
| AGAGGAGCATCAATTTACAG+AGG | 0.704191 | 8.1:+20243038 | MS.gene073282:CDS |
| AGGAGCATCAATTTACAGAG+GGG | 0.728920 | 8.1:+20243040 | MS.gene073282:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATATGAATAGTTTTA+TGG | + | chr8.1:20242969-20242988 | MS.gene073282:intron | 10.0% |
| !!! | TTTGTTTTTTGTTATAATTT+AGG | + | chr8.1:20242598-20242617 | MS.gene073282:intron | 10.0% |
| !! | CATTATACAGTAAAATAAAA+GGG | - | chr8.1:20242742-20242761 | None:intergenic | 15.0% |
| !! | TAGTAGTATAAATTTGAATA+AGG | + | chr8.1:20241442-20241461 | MS.gene073282:intron | 15.0% |
| !! | TGAAAGATTATTTATATGTA+GGG | + | chr8.1:20241362-20241381 | MS.gene073282:intron | 15.0% |
| !! | TTATTATGATCAAAATAGAT+CGG | + | chr8.1:20242280-20242299 | MS.gene073282:intron | 15.0% |
| !!! | AATGTTTTACATTTTTTTGT+TGG | + | chr8.1:20242794-20242813 | MS.gene073282:intron | 15.0% |
| !! | AAAGAATGAGAATTGATAAA+GGG | - | chr8.1:20241878-20241897 | None:intergenic | 20.0% |
| !! | CACAAAAAATTAAAACTCAA+AGG | - | chr8.1:20243082-20243101 | None:intergenic | 20.0% |
| !! | GCATTATACAGTAAAATAAA+AGG | - | chr8.1:20242743-20242762 | None:intergenic | 20.0% |
| !! | GGAATTATATATATCATTGT+CGG | - | chr8.1:20240908-20240927 | None:intergenic | 20.0% |
| !! | GTGAAAGATTATTTATATGT+AGG | + | chr8.1:20241361-20241380 | MS.gene073282:intron | 20.0% |
| !! | TAAAGAATGAGAATTGATAA+AGG | - | chr8.1:20241879-20241898 | None:intergenic | 20.0% |
| !! | TATTATGATCAAAATAGATC+GGG | + | chr8.1:20242281-20242300 | MS.gene073282:intron | 20.0% |
| !!! | CTTTGAGTTTTAATTTTTTG+TGG | + | chr8.1:20243080-20243099 | MS.gene073282:intron | 20.0% |
| !!! | GTTTTTTGTTATAATTTAGG+TGG | + | chr8.1:20242601-20242620 | MS.gene073282:intron | 20.0% |
| !!! | TAATCATTTAGCTCATAAAA+TGG | + | chr8.1:20242571-20242590 | MS.gene073282:intron | 20.0% |
| !!! | TGATAAATTCATATTCGTTT+TGG | + | chr8.1:20243105-20243124 | MS.gene073282:intron | 20.0% |
| !!! | TTGAAACAACTTTAATTTGT+TGG | + | chr8.1:20243186-20243205 | MS.gene073282:intron | 20.0% |
| !!! | TTTATTTTCCTTCATGTTAT+AGG | + | chr8.1:20242997-20243016 | MS.gene073282:intron | 20.0% |
| ! | AAAAAGCTAGCCAAAATATA+TGG | + | chr8.1:20241113-20241132 | MS.gene073282:intron | 25.0% |
| ! | AAGGATTCAGATTAATTCAT+TGG | + | chr8.1:20242120-20242139 | MS.gene073282:intron | 25.0% |
| ! | AATCTAATGATATACACTAG+GGG | - | chr8.1:20243131-20243150 | None:intergenic | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | - | chr8.1:20241910-20241929 | None:intergenic | 25.0% |
| ! | AGAATCTAATGATATACACT+AGG | - | chr8.1:20243133-20243152 | None:intergenic | 25.0% |
| ! | ATTATATATATCATTGTCGG+TGG | - | chr8.1:20240905-20240924 | None:intergenic | 25.0% |
| ! | ATTATTTATATGTAGGGACT+AGG | + | chr8.1:20241368-20241387 | MS.gene073282:intron | 25.0% |
| ! | GAATCTAATGATATACACTA+GGG | - | chr8.1:20243132-20243151 | None:intergenic | 25.0% |
| ! | GATTATTTGTACAAACTTAC+CGG | - | chr8.1:20242709-20242728 | None:intergenic | 25.0% |
| ! | TTATTTATATGTAGGGACTA+GGG | + | chr8.1:20241369-20241388 | MS.gene073282:intron | 25.0% |
| !! | ATCTTTTGCTTCAGTTTATT+TGG | + | chr8.1:20242387-20242406 | MS.gene073282:intron | 25.0% |
| !! | TCTTTTGCTTCAGTTTATTT+GGG | + | chr8.1:20242388-20242407 | MS.gene073282:intron | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | chr8.1:20242013-20242032 | None:intergenic | 25.0% |
| !! | TGATAATTTTCAGACATAGA+TGG | + | chr8.1:20241245-20241264 | MS.gene073282:intron | 25.0% |
| !! | TTGTCTATGTCCATATATTT+TGG | - | chr8.1:20241126-20241145 | None:intergenic | 25.0% |
| !!! | ACCAAATCATCATTTTGTTT+TGG | + | chr8.1:20242464-20242483 | MS.gene073282:intron | 25.0% |
| AAAAAAACCGTTGATACCTT+CGG | + | chr8.1:20241009-20241028 | MS.gene073282:CDS | 30.0% | |
| ACATTTACGAAAACCGTTAA+AGG | - | chr8.1:20242779-20242798 | None:intergenic | 30.0% | |
| ATATTCAAAGCTGAACCAAA+CGG | + | chr8.1:20242087-20242106 | MS.gene073282:intron | 30.0% | |
| CAAATTCAAAACCATTCTCA+GGG | + | chr8.1:20241609-20241628 | MS.gene073282:intron | 30.0% | |
| CAGGTACAAAAGCAAAAAAA+AGG | - | chr8.1:20242339-20242358 | None:intergenic | 30.0% | |
| CATTAAAATGTACATGAAGC+AGG | - | chr8.1:20242498-20242517 | None:intergenic | 30.0% | |
| GCCAAAACAAAATGATGATT+TGG | - | chr8.1:20242468-20242487 | None:intergenic | 30.0% | |
| TAATTTAGGTGGCTATGATA+AGG | + | chr8.1:20242612-20242631 | MS.gene073282:intron | 30.0% | |
| TCAAATTCAAAACCATTCTC+AGG | + | chr8.1:20241608-20241627 | MS.gene073282:intron | 30.0% | |
| TCTTTAACTCCCATTTATTC+CGG | - | chr8.1:20241566-20241585 | None:intergenic | 30.0% | |
| ! | AATTTTCAGACATAGATGGA+CGG | + | chr8.1:20241249-20241268 | MS.gene073282:intron | 30.0% |
| ! | TGAACCAAACACATTGTTTT+TGG | - | chr8.1:20241708-20241727 | None:intergenic | 30.0% |
| !! | CACTGTAGAGAATTGATTTT+GGG | - | chr8.1:20241669-20241688 | None:intergenic | 30.0% |
| !!! | AAGGTATCAACGGTTTTTTT+AGG | - | chr8.1:20241009-20241028 | None:intergenic | 30.0% |
| !!! | CTTTTTTTTGCTTTTGTACC+TGG | + | chr8.1:20242337-20242356 | MS.gene073282:intron | 30.0% |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | - | chr8.1:20241692-20241711 | None:intergenic | 30.0% |
| AAACATGCACTAAACATACC+TGG | - | chr8.1:20241064-20241083 | None:intergenic | 35.0% | |
| AAACCTATACACGTTGTTCA+AGG | - | chr8.1:20241816-20241835 | None:intergenic | 35.0% | |
| AACTATTCACGCTCCTTTAA+CGG | + | chr8.1:20242763-20242782 | MS.gene073282:intron | 35.0% | |
| ACAAAAGCAAAAAAAAGGCC+CGG | - | chr8.1:20242334-20242353 | None:intergenic | 35.0% | |
| ATCAATCTCCTTCTCATAGT+TGG | - | chr8.1:20242837-20242856 | None:intergenic | 35.0% | |
| CTACTCTTCCTATAACATGA+AGG | - | chr8.1:20243008-20243027 | None:intergenic | 35.0% | |
| CTAGCCAAAAACAATGTGTT+TGG | + | chr8.1:20241701-20241720 | MS.gene073282:intron | 35.0% | |
| GAGATATGAAGCACATCTAT+GGG | + | chr8.1:20241273-20241292 | MS.gene073282:CDS | 35.0% | |
| TATTCAAAGCTGAACCAAAC+GGG | + | chr8.1:20242088-20242107 | MS.gene073282:intron | 35.0% | |
| TCAGATTTCCAACTATGAGA+AGG | + | chr8.1:20242826-20242845 | MS.gene073282:intron | 35.0% | |
| TCATGTTATAGGAAGAGTAG+TGG | + | chr8.1:20243008-20243027 | MS.gene073282:intron | 35.0% | |
| ! | AGCTATTGTTTTCTTCAGCT+CGG | - | chr8.1:20240929-20240948 | None:intergenic | 35.0% |
| ! | ATTTTCAGACATAGATGGAC+GGG | + | chr8.1:20241250-20241269 | MS.gene073282:intron | 35.0% |
| ! | TGAACTTTGAAGATTCTGAC+CGG | + | chr8.1:20242312-20242331 | MS.gene073282:intron | 35.0% |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | - | chr8.1:20241785-20241804 | None:intergenic | 35.0% |
| !! | AATTTGTTGCTTCTCTACGA+AGG | + | chr8.1:20242882-20242901 | MS.gene073282:CDS | 35.0% |
| !! | GCACTGTAGAGAATTGATTT+TGG | - | chr8.1:20241670-20241689 | None:intergenic | 35.0% |
| !! | TTTTTAGGAGAAGGCTTTTG+AGG | - | chr8.1:20240994-20241013 | None:intergenic | 35.0% |
| !!! | TCAACGGTTTTTTTAGGAGA+AGG | - | chr8.1:20241003-20241022 | None:intergenic | 35.0% |
| AAGAGTAGTGGTTTCTCAAG+AGG | + | chr8.1:20243020-20243039 | MS.gene073282:CDS | 40.0% | |
| ACAAACCTCTCCATATTCAC+CGG | + | chr8.1:20240787-20240806 | MS.gene073282:CDS | 40.0% | |
| ACGAGATCTAGTGTTTGTGA+TGG | + | chr8.1:20241513-20241532 | MS.gene073282:intron | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | - | chr8.1:20241769-20241788 | None:intergenic | 40.0% | |
| ATCACAAACACTAGATCTCG+TGG | - | chr8.1:20241514-20241533 | None:intergenic | 40.0% | |
| ATGGGACAATAGTTGCAGAA+GGG | + | chr8.1:20241291-20241310 | MS.gene073282:CDS | 40.0% | |
| CAAAGTAGGAAAGGAAGACA+AGG | + | chr8.1:20241319-20241338 | MS.gene073282:CDS | 40.0% | |
| CAATTTACAGAGGGGTAACA+AGG | + | chr8.1:20243048-20243067 | MS.gene073282:CDS | 40.0% | |
| CGAGATCTAGTGTTTGTGAT+GGG | + | chr8.1:20241514-20241533 | MS.gene073282:intron | 40.0% | |
| GATCAAAATAGATCGGGTGT+TGG | + | chr8.1:20242287-20242306 | MS.gene073282:intron | 40.0% | |
| GGAGATATGAAGCACATCTA+TGG | + | chr8.1:20241272-20241291 | MS.gene073282:CDS | 40.0% | |
| GTACAAACTTACCGGAAAGT+TGG | - | chr8.1:20242701-20242720 | None:intergenic | 40.0% | |
| GTGCATGTTTGAATTGACAG+TGG | + | chr8.1:20241074-20241093 | MS.gene073282:intron | 40.0% | |
| TATGGGACAATAGTTGCAGA+AGG | + | chr8.1:20241290-20241309 | MS.gene073282:CDS | 40.0% | |
| TCTCCTTGAACAACGTGTAT+AGG | + | chr8.1:20241810-20241829 | MS.gene073282:intron | 40.0% | |
| ! | AAGGTAGAGGTCTTTGTTTC+CGG | - | chr8.1:20243261-20243280 | None:intergenic | 40.0% |
| ! | ATCTAGTGTTTGTGATGGGA+AGG | + | chr8.1:20241518-20241537 | MS.gene073282:intron | 40.0% |
| ! | GAACTTTGAAGATTCTGACC+GGG | + | chr8.1:20242313-20242332 | MS.gene073282:intron | 40.0% |
| ! | GCTTCATGGAGAATTGCTTT+TGG | - | chr8.1:20241755-20241774 | None:intergenic | 40.0% |
| ! | TCTAGTGTTTGTGATGGGAA+GGG | + | chr8.1:20241519-20241538 | MS.gene073282:intron | 40.0% |
| ! | TTTTCAGACATAGATGGACG+GGG | + | chr8.1:20241251-20241270 | MS.gene073282:intron | 40.0% |
| !! | AGAGGAGCATCAATTTACAG+AGG | + | chr8.1:20243038-20243057 | MS.gene073282:CDS | 40.0% |
| !! | AGGAGCATCAATTTACAGAG+GGG | + | chr8.1:20243040-20243059 | MS.gene073282:CDS | 40.0% |
| !! | GAGGAGCATCAATTTACAGA+GGG | + | chr8.1:20243039-20243058 | MS.gene073282:CDS | 40.0% |
| !! | GTGAATGATTGCTGATTCGT+GGG | + | chr8.1:20242359-20242378 | MS.gene073282:intron | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | - | chr8.1:20241752-20241771 | None:intergenic | 40.0% |
| AACGACCACTACCAACTTTC+CGG | + | chr8.1:20242687-20242706 | MS.gene073282:CDS | 45.0% | |
| AGGGAAGGACAAAGTAGGAA+AGG | + | chr8.1:20241310-20241329 | MS.gene073282:CDS | 45.0% | |
| ATCTTGCTGCTCTCAAGTAC+TGG | + | chr8.1:20242659-20242678 | MS.gene073282:CDS | 45.0% | |
| ATTGTGTCTAACGTGCGCTA+TGG | + | chr8.1:20241465-20241484 | MS.gene073282:intron | 45.0% | |
| CACAAGTTCGAGGACTTCTT+AGG | + | chr8.1:20240814-20240833 | MS.gene073282:CDS | 45.0% | |
| CGAATCAGCAATCATTCACC+AGG | - | chr8.1:20242358-20242377 | None:intergenic | 45.0% | |
| CTAAGAAGTCCTCGAACTTG+TGG | - | chr8.1:20240816-20240835 | None:intergenic | 45.0% | |
| GAAAACTGCTGAAGCTGTGT+GGG | - | chr8.1:20240883-20240902 | None:intergenic | 45.0% | |
| GACAATAGTTGCAGAAGGGA+AGG | + | chr8.1:20241295-20241314 | MS.gene073282:CDS | 45.0% | |
| GACCACTGACCGGAATAAAT+GGG | + | chr8.1:20241554-20241573 | MS.gene073282:intron | 45.0% | |
| GGAAACAAAGACCTCTACCT+TGG | + | chr8.1:20243260-20243279 | MS.gene073282:CDS | 45.0% | |
| GGTGAATATGGAGAGGTTTG+TGG | - | chr8.1:20240788-20240807 | None:intergenic | 45.0% | |
| TCTCAGAAGCCAAACCAAAC+AGG | - | chr8.1:20241635-20241654 | None:intergenic | 45.0% | |
| TCTTGCTGCTCTCAAGTACT+GGG | + | chr8.1:20242660-20242679 | MS.gene073282:CDS | 45.0% | |
| TGACAGTGTGACTGATGCAT+TGG | - | chr8.1:20242212-20242231 | None:intergenic | 45.0% | |
| TGACCACTGACCGGAATAAA+TGG | + | chr8.1:20241553-20241572 | MS.gene073282:intron | 45.0% | |
| TTGAGGTTCGGAGTTTGGTT+CGG | - | chr8.1:20240977-20240996 | None:intergenic | 45.0% | |
| !! | ACTTACCGGAAAGTTGGTAG+TGG | - | chr8.1:20242695-20242714 | None:intergenic | 45.0% |
| !! | GGTGAATGATTGCTGATTCG+TGG | + | chr8.1:20242358-20242377 | MS.gene073282:intron | 45.0% |
| !!! | AGGAGAAGGCTTTTGAGGTT+CGG | - | chr8.1:20240989-20241008 | None:intergenic | 45.0% |
| AACCAAACAGGCCCTGAGAA+TGG | - | chr8.1:20241623-20241642 | None:intergenic | 50.0% | |
| AACCATTCTCAGGGCCTGTT+TGG | + | chr8.1:20241618-20241637 | MS.gene073282:intron | 50.0% | |
| ACAATAGCTGCTTGCTTCCC+TGG | + | chr8.1:20240940-20240959 | MS.gene073282:CDS | 50.0% | |
| ACCAAACGGGCACTCAATCA+AGG | + | chr8.1:20242101-20242120 | MS.gene073282:intron | 50.0% | |
| CAGTGAATGTGACCACTGAC+CGG | + | chr8.1:20241544-20241563 | MS.gene073282:intron | 50.0% | |
| CTCCCATTTATTCCGGTCAG+TGG | - | chr8.1:20241559-20241578 | None:intergenic | 50.0% | |
| GATGGTACACGGGCAAAAGT+GGG | + | chr8.1:20241487-20241506 | MS.gene073282:intron | 50.0% | |
| GCAAGAATAGGCAGAGTTGC+CGG | + | chr8.1:20243239-20243258 | MS.gene073282:CDS | 50.0% | |
| GCAGAAGGGAAGGACAAAGT+AGG | + | chr8.1:20241305-20241324 | MS.gene073282:CDS | 50.0% | |
| GGAAAACTGCTGAAGCTGTG+TGG | - | chr8.1:20240884-20240903 | None:intergenic | 50.0% | |
| GGCTGTTCTTGTTGGTGCAA+CGG | - | chr8.1:20240845-20240864 | None:intergenic | 50.0% | |
| TCCTTGATTGAGTGCCCGTT+TGG | - | chr8.1:20242105-20242124 | None:intergenic | 50.0% | |
| TGCCTATTCTTGCCTGCCAT+CGG | - | chr8.1:20243232-20243251 | None:intergenic | 50.0% | |
| TGTCTAACGTGCGCTATGGA+TGG | + | chr8.1:20241469-20241488 | MS.gene073282:intron | 50.0% | |
| TTCTCAGGGCCTGTTTGGTT+TGG | + | chr8.1:20241623-20241642 | MS.gene073282:intron | 50.0% | |
| ! | CTTGCTGCTCTCAAGTACTG+GGG | + | chr8.1:20242661-20242680 | MS.gene073282:CDS | 50.0% |
| !! | GCGTTGTCCGAAGGTATCAA+CGG | - | chr8.1:20241019-20241038 | None:intergenic | 50.0% |
| !! | GGAAAGTTGGTAGTGGTCGT+TGG | - | chr8.1:20242688-20242707 | None:intergenic | 50.0% |
| !!! | GGCTTTTGAGGTTCGGAGTT+TGG | - | chr8.1:20240982-20241001 | None:intergenic | 50.0% |
| ATAGCTGCTTGCTTCCCTGG+TGG | + | chr8.1:20240943-20240962 | MS.gene073282:CDS | 55.0% | |
| CAACGCACCTCCATCTATCG+CGG | + | chr8.1:20241033-20241052 | MS.gene073282:CDS | 55.0% | |
| CGGTCAGTGGTCACATTCAC+TGG | - | chr8.1:20241546-20241565 | None:intergenic | 55.0% | |
| CGTGCGCTATGGATGGTACA+CGG | + | chr8.1:20241476-20241495 | MS.gene073282:intron | 55.0% | |
| CTTGTGGCTGCCGGTGAATA+TGG | - | chr8.1:20240800-20240819 | None:intergenic | 55.0% | |
| GCTTCACCAGAGGCAACAGA+TGG | + | chr8.1:20240757-20240776 | MS.gene073282:CDS | 55.0% | |
| GGATGGTACACGGGCAAAAG+TGG | + | chr8.1:20241486-20241505 | MS.gene073282:intron | 55.0% | |
| GTGCGCTATGGATGGTACAC+GGG | + | chr8.1:20241477-20241496 | MS.gene073282:intron | 55.0% | |
| GTTCCTCCATCTGTTGCCTC+TGG | - | chr8.1:20240766-20240785 | None:intergenic | 55.0% | |
| TCACCAGAGGCAACAGATGG+AGG | + | chr8.1:20240760-20240779 | MS.gene073282:CDS | 55.0% | |
| TGCCTCTGGTGAAGCTTCCA+CGG | - | chr8.1:20240752-20240771 | None:intergenic | 55.0% | |
| !! | AGGTTCGGAGTTTGGTTCGG+TGG | - | chr8.1:20240974-20240993 | None:intergenic | 55.0% |
| !! | GGTTCGGAGTTTGGTTCGGT+GGG | - | chr8.1:20240973-20240992 | None:intergenic | 55.0% |
| !! | GTTCGGAGTTTGGTTCGGTG+GGG | - | chr8.1:20240972-20240991 | None:intergenic | 55.0% |
| CCTGGTGACACCGCGATAGA+TGG | - | chr8.1:20241046-20241065 | None:intergenic | 60.0% | |
| GGCCGATGGCAGGCAAGAAT+AGG | + | chr8.1:20243227-20243246 | MS.gene073282:CDS | 60.0% | |
| GGCTGCCGGTGAATATGGAG+AGG | - | chr8.1:20240795-20240814 | None:intergenic | 60.0% | |
| GGTGACACCGCGATAGATGG+AGG | - | chr8.1:20241043-20241062 | None:intergenic | 60.0% | |
| GTCCTCGAACTTGTGGCTGC+CGG | - | chr8.1:20240809-20240828 | None:intergenic | 60.0% | |
| GTTGCGGCGGCTGTTCTTGT+TGG | - | chr8.1:20240853-20240872 | None:intergenic | 60.0% | |
| TGGTGCAGACACCACCAGCA+TGG | + | chr8.1:20243206-20243225 | MS.gene073282:intron | 60.0% | |
| ! | GATGGAGGTGCGTTGTCCGA+AGG | - | chr8.1:20241028-20241047 | None:intergenic | 60.0% |
| !! | CCATCTATCGCGGTGTCACC+AGG | + | chr8.1:20241043-20241062 | MS.gene073282:CDS | 60.0% |
| CACCGGCAGCCACAAGTTCG+AGG | + | chr8.1:20240804-20240823 | MS.gene073282:CDS | 65.0% | |
| CGCCGTGGAAGCTTCACCAG+AGG | + | chr8.1:20240747-20240766 | MS.gene073282:CDS | 65.0% | |
| CTGTGTGGGTGCGCACGTTG+CGG | - | chr8.1:20240869-20240888 | None:intergenic | 65.0% | |
| GACACCACCAGCATGGCCGA+TGG | + | chr8.1:20243213-20243232 | MS.gene073282:intron | 65.0% | |
| TTGCCTGCCATCGGCCATGC+TGG | - | chr8.1:20243223-20243242 | None:intergenic | 65.0% | |
| ! | GTTCGGTGGGGTAGCCACCA+GGG | - | chr8.1:20240960-20240979 | None:intergenic | 65.0% |
| CCACCAGCATGGCCGATGGC+AGG | + | chr8.1:20243217-20243236 | MS.gene073282:CDS | 70.0% | |
| CCTGCCATCGGCCATGCTGG+TGG | - | chr8.1:20243220-20243239 | None:intergenic | 70.0% | |
| TGTGGGTGCGCACGTTGCGG+CGG | - | chr8.1:20240866-20240885 | None:intergenic | 70.0% | |
| !! | GGTTCGGTGGGGTAGCCACC+AGG | - | chr8.1:20240961-20240980 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 20240737 | 20243290 | 20240737 | ID=MS.gene073282 |
| chr8.1 | mRNA | 20240737 | 20243290 | 20240737 | ID=MS.gene073282.t1;Parent=MS.gene073282 |
| chr8.1 | exon | 20240737 | 20241064 | 20240737 | ID=MS.gene073282.t1.exon1;Parent=MS.gene073282.t1 |
| chr8.1 | CDS | 20240737 | 20241064 | 20240737 | ID=cds.MS.gene073282.t1;Parent=MS.gene073282.t1 |
| chr8.1 | exon | 20241258 | 20241340 | 20241258 | ID=MS.gene073282.t1.exon2;Parent=MS.gene073282.t1 |
| chr8.1 | CDS | 20241258 | 20241340 | 20241258 | ID=cds.MS.gene073282.t1;Parent=MS.gene073282.t1 |
| chr8.1 | exon | 20242401 | 20242409 | 20242401 | ID=MS.gene073282.t1.exon3;Parent=MS.gene073282.t1 |
| chr8.1 | CDS | 20242401 | 20242409 | 20242401 | ID=cds.MS.gene073282.t1;Parent=MS.gene073282.t1 |
| chr8.1 | exon | 20242620 | 20242708 | 20242620 | ID=MS.gene073282.t1.exon4;Parent=MS.gene073282.t1 |
| chr8.1 | CDS | 20242620 | 20242708 | 20242620 | ID=cds.MS.gene073282.t1;Parent=MS.gene073282.t1 |
| chr8.1 | exon | 20242830 | 20242903 | 20242830 | ID=MS.gene073282.t1.exon5;Parent=MS.gene073282.t1 |
| chr8.1 | CDS | 20242830 | 20242903 | 20242830 | ID=cds.MS.gene073282.t1;Parent=MS.gene073282.t1 |
| chr8.1 | exon | 20243019 | 20243069 | 20243019 | ID=MS.gene073282.t1.exon6;Parent=MS.gene073282.t1 |
| chr8.1 | CDS | 20243019 | 20243069 | 20243019 | ID=cds.MS.gene073282.t1;Parent=MS.gene073282.t1 |
| chr8.1 | exon | 20243214 | 20243290 | 20243214 | ID=MS.gene073282.t1.exon7;Parent=MS.gene073282.t1 |
| chr8.1 | CDS | 20243214 | 20243290 | 20243214 | ID=cds.MS.gene073282.t1;Parent=MS.gene073282.t1 |
| Gene Sequence |
| Protein sequence |
