Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073364.t1 | XP_013463257.1 | 98.2 | 221 | 2 | 1 | 1 | 219 | 1 | 221 | 9.80E-114 | 419.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073364.t1 | O23429 | 86.9 | 222 | 26 | 2 | 1 | 219 | 1 | 222 | 1.9e-105 | 383.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073364.t1 | B7FI15 | 98.2 | 221 | 2 | 1 | 1 | 219 | 1 | 221 | 7.1e-114 | 419.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055313 | MS.gene073364 | 0.801717 | 7.89E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47655 | MS.gene073364 | PPI |
| MS.gene073364 | MS.gene016966 | PPI |
| MS.gene66057 | MS.gene073364 | PPI |
| MS.gene073364 | MS.gene78212 | PPI |
| MS.gene073364 | MS.gene77217 | PPI |
| MS.gene073364 | MS.gene88213 | PPI |
| MS.gene073364 | MS.gene66728 | PPI |
| MS.gene073364 | MS.gene029336 | PPI |
| MS.gene073364 | MS.gene70862 | PPI |
| MS.gene65117 | MS.gene073364 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073364.t1 | MTR_2g436870 | 98.190 | 221 | 2 | 1 | 1 | 219 | 1 | 221 | 8.64e-163 | 448 |
| MS.gene073364.t1 | MTR_1g047720 | 67.123 | 219 | 70 | 1 | 1 | 217 | 1 | 219 | 9.61e-114 | 324 |
| MS.gene073364.t1 | MTR_4g022570 | 70.776 | 219 | 62 | 1 | 1 | 217 | 1 | 219 | 6.61e-110 | 314 |
| MS.gene073364.t1 | MTR_7g058900 | 70.000 | 220 | 64 | 1 | 1 | 218 | 1 | 220 | 2.98e-106 | 305 |
| MS.gene073364.t1 | MTR_4g083490 | 66.495 | 194 | 63 | 1 | 2 | 193 | 4 | 197 | 3.68e-98 | 285 |
| MS.gene073364.t1 | MTR_2g028790 | 63.918 | 194 | 68 | 1 | 2 | 193 | 6 | 199 | 7.72e-95 | 276 |
| MS.gene073364.t1 | MTR_7g058640 | 63.077 | 195 | 70 | 1 | 1 | 193 | 1 | 195 | 3.90e-91 | 266 |
| MS.gene073364.t1 | MTR_1g111890 | 50.840 | 238 | 96 | 2 | 1 | 217 | 1 | 238 | 1.81e-87 | 258 |
| MS.gene073364.t1 | MTR_7g058640 | 61.628 | 172 | 64 | 1 | 1 | 170 | 1 | 172 | 1.91e-76 | 229 |
| MS.gene073364.t1 | MTR_1g047710 | 60.150 | 133 | 53 | 0 | 53 | 185 | 3 | 135 | 2.40e-56 | 176 |
| MS.gene073364.t1 | MTR_7g058640 | 64.957 | 117 | 41 | 0 | 77 | 193 | 1 | 117 | 2.05e-52 | 166 |
| MS.gene073364.t1 | MTR_4g022470 | 69.091 | 110 | 34 | 0 | 60 | 169 | 8 | 117 | 8.43e-51 | 160 |
| MS.gene073364.t1 | MTR_5g089370 | 35.545 | 211 | 131 | 4 | 7 | 214 | 4 | 212 | 9.18e-39 | 133 |
| MS.gene073364.t1 | MTR_4g052550 | 31.925 | 213 | 140 | 4 | 5 | 214 | 2 | 212 | 1.17e-37 | 130 |
| MS.gene073364.t1 | MTR_4g115390 | 28.372 | 215 | 145 | 4 | 7 | 214 | 4 | 216 | 6.30e-31 | 113 |
| MS.gene073364.t1 | MTR_4g022550 | 68.852 | 61 | 19 | 0 | 157 | 217 | 11 | 71 | 9.29e-18 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073364.t1 | AT4G15780 | 87.709 | 179 | 19 | 2 | 1 | 176 | 1 | 179 | 1.09e-115 | 328 |
| MS.gene073364.t1 | AT1G04760 | 67.273 | 220 | 70 | 1 | 1 | 218 | 1 | 220 | 1.95e-107 | 308 |
| MS.gene073364.t1 | AT1G04760 | 67.273 | 220 | 70 | 1 | 1 | 218 | 1 | 220 | 1.95e-107 | 308 |
| MS.gene073364.t1 | AT2G33120 | 70.455 | 220 | 63 | 1 | 1 | 218 | 1 | 220 | 2.90e-107 | 308 |
| MS.gene073364.t1 | AT2G32670 | 69.545 | 220 | 65 | 1 | 1 | 218 | 66 | 285 | 9.83e-107 | 309 |
| MS.gene073364.t1 | AT2G33120 | 67.982 | 228 | 63 | 1 | 1 | 218 | 1 | 228 | 7.43e-106 | 305 |
| MS.gene073364.t1 | AT1G04750 | 68.950 | 219 | 66 | 1 | 1 | 217 | 1 | 219 | 8.04e-105 | 301 |
| MS.gene073364.t1 | AT3G54300 | 51.250 | 240 | 96 | 3 | 1 | 219 | 1 | 240 | 9.11e-89 | 261 |
| MS.gene073364.t1 | AT3G54300 | 51.250 | 240 | 96 | 3 | 1 | 219 | 1 | 240 | 9.11e-89 | 261 |
| MS.gene073364.t1 | AT3G54300 | 51.250 | 240 | 96 | 3 | 1 | 219 | 1 | 240 | 9.11e-89 | 261 |
| MS.gene073364.t1 | AT2G33110 | 58.904 | 219 | 84 | 2 | 1 | 217 | 1 | 215 | 3.99e-82 | 244 |
| MS.gene073364.t1 | AT2G33110 | 63.462 | 156 | 55 | 1 | 1 | 154 | 1 | 156 | 1.73e-68 | 208 |
| MS.gene073364.t1 | AT1G04750 | 68.085 | 141 | 45 | 0 | 77 | 217 | 1 | 141 | 3.68e-59 | 183 |
| MS.gene073364.t1 | AT1G04750 | 68.085 | 141 | 45 | 0 | 77 | 217 | 1 | 141 | 3.68e-59 | 183 |
| MS.gene073364.t1 | AT1G04750 | 68.085 | 141 | 45 | 0 | 77 | 217 | 1 | 141 | 3.68e-59 | 183 |
| MS.gene073364.t1 | AT5G22360 | 33.178 | 214 | 137 | 4 | 5 | 214 | 2 | 213 | 3.03e-42 | 142 |
| MS.gene073364.t1 | AT5G11150 | 33.645 | 214 | 136 | 4 | 5 | 214 | 2 | 213 | 1.16e-40 | 138 |
| MS.gene073364.t1 | AT5G11150 | 33.645 | 214 | 136 | 4 | 5 | 214 | 2 | 213 | 1.58e-40 | 138 |
| MS.gene073364.t1 | AT4G32150 | 34.737 | 190 | 119 | 4 | 5 | 191 | 2 | 189 | 8.26e-37 | 128 |
| MS.gene073364.t1 | AT2G25340 | 32.632 | 190 | 123 | 4 | 5 | 191 | 2 | 189 | 3.21e-31 | 114 |
| MS.gene073364.t1 | AT2G33120 | 72.093 | 86 | 24 | 0 | 132 | 217 | 52 | 137 | 1.05e-30 | 110 |
| MS.gene073364.t1 | AT3G24890 | 42.268 | 97 | 42 | 2 | 112 | 198 | 15 | 107 | 9.49e-19 | 79.0 |
Find 33 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTCTGAACAAGGAATT+TGG | 0.190475 | 2.4:-54728431 | MS.gene073364:CDS |
| TCAGAACATGAAAATTAAAT+TGG | 0.225912 | 2.4:-54727177 | MS.gene073364:CDS |
| AAAATTAAATTGGTTGTTCT+TGG | 0.225914 | 2.4:-54727167 | MS.gene073364:CDS |
| AAATTCCTTGTTCAGACTTT+TGG | 0.253010 | 2.4:+54728433 | None:intergenic |
| CTGCTTGCTAACAGATTCTT+TGG | 0.273100 | 2.4:+54728535 | None:intergenic |
| ACTGTAGGTGAACTTGTTAT+TGG | 0.347549 | 2.4:+54730329 | None:intergenic |
| TTCATGTGCTCTTTCATAAT+CGG | 0.353938 | 2.4:+54728314 | None:intergenic |
| AGTCAGCTTTGACACGTTCA+AGG | 0.435569 | 2.4:+54728498 | None:intergenic |
| GTTATCTGGCTCTCTATTTG+TGG | 0.442264 | 2.4:-54727122 | MS.gene073364:CDS |
| AAAGTCTGAACAAGGAATTT+GGG | 0.465281 | 2.4:-54728430 | MS.gene073364:intron |
| GTGAACTTGTTATTGGAAGA+AGG | 0.469932 | 2.4:+54730336 | None:intergenic |
| ATCTGGCTCTCTATTTGTGG+TGG | 0.485999 | 2.4:-54727119 | MS.gene073364:CDS |
| AGACACTGAGCTGCAATGGC+AGG | 0.504015 | 2.4:+54730369 | None:intergenic |
| CTGAAGACACTGAGCTGCAA+TGG | 0.506758 | 2.4:+54730365 | None:intergenic |
| ATCTTCGACAAGAAAATTGA+AGG | 0.507938 | 2.4:+54730293 | None:intergenic |
| CACAGGTCCGTCGGAAGATG+TGG | 0.530944 | 2.4:-54727202 | MS.gene073364:CDS |
| ATATACAGCTTTGTAGCTCG+TGG | 0.541984 | 2.4:-54730435 | MS.gene073364:CDS |
| GCTGACTTTAAGAAAAGATA+CGG | 0.549060 | 2.4:-54728482 | MS.gene073364:CDS |
| GCTGAGTACACCGAGTTCAC+TGG | 0.552986 | 2.4:-54730399 | MS.gene073364:CDS |
| TGAAAAGCTATTAAAAGTGA+AGG | 0.564756 | 2.4:-54728264 | MS.gene073364:CDS |
| CAAGAAAATTGAAGGTGTGA+TGG | 0.566358 | 2.4:+54730301 | None:intergenic |
| GACACGTTCAAGGAAAGCAA+TGG | 0.576248 | 2.4:+54728508 | None:intergenic |
| GCTCAAGATTTCAGAAAGCA+AGG | 0.582915 | 2.4:-54727227 | MS.gene073364:CDS |
| AGGAAAGTTACCAGTGAACT+CGG | 0.587842 | 2.4:+54730389 | None:intergenic |
| TTTCAGAAAGCAAGGAACAC+AGG | 0.591739 | 2.4:-54727219 | MS.gene073364:CDS |
| AGCAAGGAACACAGGTCCGT+CGG | 0.592470 | 2.4:-54727211 | MS.gene073364:CDS |
| TTTAAGAAAAGATACGGTGG+TGG | 0.612427 | 2.4:-54728476 | MS.gene073364:CDS |
| TATTGCCAAAAGTCTGAACA+AGG | 0.635316 | 2.4:-54728438 | MS.gene073364:CDS |
| CTTTGTAGCTCGTGGAACGA+TGG | 0.636038 | 2.4:-54730427 | MS.gene073364:CDS |
| CATGTTAGAAAATATAGACA+AGG | 0.648118 | 2.4:-54728216 | MS.gene073364:intron |
| GGTGTGATGGTCACAACTGT+AGG | 0.651595 | 2.4:+54730314 | None:intergenic |
| TCTGATACCACATCTTCCGA+CGG | 0.674197 | 2.4:+54727195 | None:intergenic |
| GACTTTAAGAAAAGATACGG+TGG | 0.697543 | 2.4:-54728479 | MS.gene073364:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTATATTAAATTT+GGG | - | chr2.4:54727851-54727870 | MS.gene073364:intron | 0.0% |
| !!! | TTATTTTTTTATATTAAATT+TGG | - | chr2.4:54727850-54727869 | MS.gene073364:intron | 0.0% |
| !! | AAAAATAATTCTTAGAATTT+CGG | + | chr2.4:54727838-54727857 | None:intergenic | 10.0% |
| !! | GTATAAAATGTTTAATAATA+TGG | - | chr2.4:54729201-54729220 | MS.gene073364:intron | 10.0% |
| !! | ATAAAAGCTTATTATTAGTA+AGG | - | chr2.4:54728624-54728643 | MS.gene073364:intron | 15.0% |
| !! | CAAATATAGACAATAATTAA+TGG | + | chr2.4:54728381-54728400 | None:intergenic | 15.0% |
| !! | CATTAATTATTGTCTATATT+TGG | - | chr2.4:54728379-54728398 | MS.gene073364:intron | 15.0% |
| !!! | TTTTAGAAAAAGATAAACTT+TGG | - | chr2.4:54728443-54728462 | MS.gene073364:CDS | 15.0% |
| !! | AAAATTAAATTGGTTGTTCT+TGG | - | chr2.4:54730386-54730405 | MS.gene073364:CDS | 20.0% |
| !! | ATTATTGTCTATATTTGGAT+TGG | - | chr2.4:54728384-54728403 | MS.gene073364:intron | 20.0% |
| !! | ATTCAAAAACCGTATTAAAA+TGG | + | chr2.4:54727916-54727935 | None:intergenic | 20.0% |
| !! | CCAGTAATTATTTGAAAAAA+TGG | - | chr2.4:54729771-54729790 | MS.gene073364:intron | 20.0% |
| !! | CTTAAATAGAGCTTAAAATA+AGG | + | chr2.4:54730095-54730114 | None:intergenic | 20.0% |
| !! | TCAGAACATGAAAATTAAAT+TGG | - | chr2.4:54730376-54730395 | MS.gene073364:CDS | 20.0% |
| !! | TGTAATTAAAGAACATTGAA+AGG | - | chr2.4:54728330-54728349 | MS.gene073364:intron | 20.0% |
| !! | TTTATATTAAATTTGGGGAA+GGG | - | chr2.4:54727857-54727876 | MS.gene073364:intron | 20.0% |
| !! | TTTATTGAGTTCTCTAATTA+AGG | - | chr2.4:54727547-54727566 | MS.gene073364:intron | 20.0% |
| !!! | AAGTATTTGTTTTTGGATTT+TGG | - | chr2.4:54728014-54728033 | MS.gene073364:intron | 20.0% |
| !!! | ATAAGCTTTTATATGTTTGT+AGG | + | chr2.4:54728616-54728635 | None:intergenic | 20.0% |
| !!! | ATCTTTTTCTAAAATCACAA+TGG | + | chr2.4:54728437-54728456 | None:intergenic | 20.0% |
| !!! | ATTAAGGTAAATGATTTTTG+TGG | - | chr2.4:54727581-54727600 | MS.gene073364:intron | 20.0% |
| !!! | ATTAGTTATGCATTCTTTTT+AGG | - | chr2.4:54728055-54728074 | MS.gene073364:intron | 20.0% |
| !!! | ATTTTAATACGGTTTTTGAA+TGG | - | chr2.4:54727915-54727934 | MS.gene073364:intron | 20.0% |
| !!! | CCATTTTTTCAAATAATTAC+TGG | + | chr2.4:54729774-54729793 | None:intergenic | 20.0% |
| !!! | CTTTAATCATTTATGTTTTC+AGG | - | chr2.4:54730164-54730183 | MS.gene073364:intron | 20.0% |
| !!! | GAAAAGATTTTGTAATTTTC+AGG | - | chr2.4:54730304-54730323 | MS.gene073364:CDS | 20.0% |
| !!! | TTTAAAATCTAAGCAAACAA+CGG | + | chr2.4:54728915-54728934 | None:intergenic | 20.0% |
| !!! | TTTTATATTAAATTTGGGGA+AGG | - | chr2.4:54727856-54727875 | MS.gene073364:intron | 20.0% |
| ! | AAATGTTAAGAACAATGTGA+AGG | - | chr2.4:54729644-54729663 | MS.gene073364:intron | 25.0% |
| ! | ACAACAGTGATTAAATGATT+AGG | + | chr2.4:54729958-54729977 | None:intergenic | 25.0% |
| ! | CATGTTAGAAAATATAGACA+AGG | - | chr2.4:54729337-54729356 | MS.gene073364:intron | 25.0% |
| ! | TAAAGGATTGACAAAATGAT+CGG | + | chr2.4:54728143-54728162 | None:intergenic | 25.0% |
| ! | TGAAAAGCTATTAAAAGTGA+AGG | - | chr2.4:54729289-54729308 | MS.gene073364:intron | 25.0% |
| ! | TGTCATTAGATGATTAAATC+CGG | - | chr2.4:54727621-54727640 | MS.gene073364:intron | 25.0% |
| !! | AAAGAACATTGAAAGGATTT+TGG | - | chr2.4:54728337-54728356 | MS.gene073364:intron | 25.0% |
| !! | AATCTGAATTGTGTGTTTTT+AGG | - | chr2.4:54727382-54727401 | MS.gene073364:intron | 25.0% |
| !! | ATTTTAAGCTCTATTTAAGC+TGG | - | chr2.4:54730096-54730115 | MS.gene073364:intron | 25.0% |
| !! | GAAGTATTAAGAATTTGAGA+GGG | + | chr2.4:54729605-54729624 | None:intergenic | 25.0% |
| !! | TAATAGCTTTTCAATCTCTT+CGG | + | chr2.4:54729282-54729301 | None:intergenic | 25.0% |
| !! | TGAAGTATTAAGAATTTGAG+AGG | + | chr2.4:54729606-54729625 | None:intergenic | 25.0% |
| !! | TGTGGAATGTTGTTATATTT+TGG | - | chr2.4:54727476-54727495 | MS.gene073364:intron | 25.0% |
| !! | TTGCTTAGATTTTAAACATC+AGG | - | chr2.4:54728919-54728938 | MS.gene073364:intron | 25.0% |
| !!! | AAAATGGATTGTAAGTTAGT+AGG | + | chr2.4:54729452-54729471 | None:intergenic | 25.0% |
| !!! | AAAGGATTTTGGAATGATTA+CGG | - | chr2.4:54728348-54728367 | MS.gene073364:intron | 25.0% |
| !!! | CACGTTTTCTCTAAAAATAT+GGG | - | chr2.4:54729472-54729491 | MS.gene073364:intron | 25.0% |
| !!! | CACTAATGACCATTTTAATA+CGG | - | chr2.4:54727904-54727923 | MS.gene073364:intron | 25.0% |
| !!! | GCTTAAAGTTTTGATCTTTT+TGG | - | chr2.4:54727425-54727444 | MS.gene073364:intron | 25.0% |
| !!! | TAAAGTTTGTTGACATCTTT+AGG | - | chr2.4:54729162-54729181 | MS.gene073364:intron | 25.0% |
| !!! | TAAGGTTTGTTAGTCAATTA+AGG | - | chr2.4:54727565-54727584 | MS.gene073364:intron | 25.0% |
| !!! | TAGTTTTTGAGTTGTGATTA+GGG | - | chr2.4:54728224-54728243 | MS.gene073364:CDS | 25.0% |
| !!! | TCACGTTTTCTCTAAAAATA+TGG | - | chr2.4:54729471-54729490 | MS.gene073364:intron | 25.0% |
| !!! | TTTTAGAGAAAACGTGAAAA+TGG | + | chr2.4:54729468-54729487 | None:intergenic | 25.0% |
| !!! | TTTTGGTGATTGAAGTAAAT+AGG | - | chr2.4:54727493-54727512 | MS.gene073364:intron | 25.0% |
| AAAAACAAATACTTCTAGCC+TGG | + | chr2.4:54728008-54728027 | None:intergenic | 30.0% | |
| AAAAGTCTGAACAAGGAATT+TGG | - | chr2.4:54729122-54729141 | MS.gene073364:intron | 30.0% | |
| AAAGTCTGAACAAGGAATTT+GGG | - | chr2.4:54729123-54729142 | MS.gene073364:intron | 30.0% | |
| AACAATGTGAAGGACATAAT+TGG | - | chr2.4:54729654-54729673 | MS.gene073364:intron | 30.0% | |
| AGACAATGCAAGAAATTCAT+AGG | + | chr2.4:54730032-54730051 | None:intergenic | 30.0% | |
| ATAACTGTGGTAGAAAATGA+TGG | + | chr2.4:54729414-54729433 | None:intergenic | 30.0% | |
| ATAATTCTTAGAATTTCGGC+TGG | + | chr2.4:54727834-54727853 | None:intergenic | 30.0% | |
| ATCTTCGACAAGAAAATTGA+AGG | + | chr2.4:54727263-54727282 | None:intergenic | 30.0% | |
| ATGCAAACATTGTTCAAACA+AGG | - | chr2.4:54728172-54728191 | MS.gene073364:intron | 30.0% | |
| CAATAATCAGGGATATTGAT+GGG | - | chr2.4:54728113-54728132 | MS.gene073364:intron | 30.0% | |
| CCTAACTCAACTTATAAAAC+CGG | + | chr2.4:54727810-54727829 | None:intergenic | 30.0% | |
| TAACTGTGGTAGAAAATGAT+GGG | + | chr2.4:54729413-54729432 | None:intergenic | 30.0% | |
| TAATTCTTAGAATTTCGGCT+GGG | + | chr2.4:54727833-54727852 | None:intergenic | 30.0% | |
| TCAATAATCAGGGATATTGA+TGG | - | chr2.4:54728112-54728131 | MS.gene073364:intron | 30.0% | |
| TGCAAACATTGTTCAAACAA+GGG | - | chr2.4:54728173-54728192 | MS.gene073364:intron | 30.0% | |
| TGTTATATTTAGTGAGAGCA+TGG | + | chr2.4:54728845-54728864 | None:intergenic | 30.0% | |
| TTCATGTGCTCTTTCATAAT+CGG | + | chr2.4:54729242-54729261 | None:intergenic | 30.0% | |
| TTCTACCACAGTTATCATTA+TGG | - | chr2.4:54729419-54729438 | MS.gene073364:intron | 30.0% | |
| ! | AAATTCCTTGTTCAGACTTT+TGG | + | chr2.4:54729123-54729142 | None:intergenic | 30.0% |
| ! | AGTTACTCAAAGTTTCAAGT+GGG | + | chr2.4:54730000-54730019 | None:intergenic | 30.0% |
| ! | GCTGACTTTAAGAAAAGATA+CGG | - | chr2.4:54729071-54729090 | MS.gene073364:intron | 30.0% |
| ! | TGTTTATTTCCGAAACCTTT+TGG | + | chr2.4:54728593-54728612 | None:intergenic | 30.0% |
| ! | TTCAATTTTCTTGTCGAAGA+TGG | - | chr2.4:54727262-54727281 | MS.gene073364:intron | 30.0% |
| ! | TTTCTCTAAAAATATGGGAG+TGG | - | chr2.4:54729477-54729496 | MS.gene073364:intron | 30.0% |
| !! | TCCATTTTTCCAAAAGGTTT+CGG | - | chr2.4:54728581-54728600 | MS.gene073364:intron | 30.0% |
| !!! | AATTCTGTTGTTTTTGGTTC+TGG | - | chr2.4:54730409-54730428 | MS.gene073364:CDS | 30.0% |
| !!! | AATTGTGTGTTTTTAGGTGA+TGG | - | chr2.4:54727388-54727407 | MS.gene073364:intron | 30.0% |
| !!! | AGACAAGGTACTGTTTTTTT+AGG | - | chr2.4:54729352-54729371 | MS.gene073364:intron | 30.0% |
| !!! | AGGCTAGAAGTATTTGTTTT+TGG | - | chr2.4:54728007-54728026 | MS.gene073364:intron | 30.0% |
| !!! | GGTTTTTGAGTTGATTTTAG+TGG | - | chr2.4:54727446-54727465 | MS.gene073364:intron | 30.0% |
| !!! | GTAGTTTTTGAGTTGTGATT+AGG | - | chr2.4:54728223-54728242 | MS.gene073364:CDS | 30.0% |
| !!! | TCTTGGAATTCTGTTGTTTT+TGG | - | chr2.4:54730403-54730422 | MS.gene073364:CDS | 30.0% |
| !!! | TTTGAGTTGATTTTAGTGGT+GGG | - | chr2.4:54727450-54727469 | MS.gene073364:intron | 30.0% |
| !!! | TTTTGAGTTGATTTTAGTGG+TGG | - | chr2.4:54727449-54727468 | MS.gene073364:intron | 30.0% |
| AAAACAATGCTGTCTAACCT+TGG | + | chr2.4:54730261-54730280 | None:intergenic | 35.0% | |
| AACATTGCAATATGTAGCAC+TGG | + | chr2.4:54729887-54729906 | None:intergenic | 35.0% | |
| AAGTTGACTATGTGCATGTT+TGG | + | chr2.4:54728521-54728540 | None:intergenic | 35.0% | |
| AGGATCCATAATGATAACTG+TGG | + | chr2.4:54729427-54729446 | None:intergenic | 35.0% | |
| CAGTTACTCAAAGTTTCAAG+TGG | + | chr2.4:54730001-54730020 | None:intergenic | 35.0% | |
| GATTTGAACTCAATACCTTG+AGG | - | chr2.4:54727937-54727956 | MS.gene073364:intron | 35.0% | |
| GCTGCAATTTATAGAAAGCA+CGG | + | chr2.4:54728984-54729003 | None:intergenic | 35.0% | |
| GTTTGCATGACTATCACTAA+AGG | + | chr2.4:54728160-54728179 | None:intergenic | 35.0% | |
| TATTGCCAAAAGTCTGAACA+AGG | - | chr2.4:54729115-54729134 | MS.gene073364:intron | 35.0% | |
| TCTCACATTGCTTAGAGATA+TGG | - | chr2.4:54727741-54727760 | MS.gene073364:intron | 35.0% | |
| TGATTAGGGTGCAATAGAAA+TGG | - | chr2.4:54728238-54728257 | MS.gene073364:CDS | 35.0% | |
| TGTTATTAGCTGCCTAATTG+CGG | - | chr2.4:54727651-54727670 | MS.gene073364:intron | 35.0% | |
| TTGGAGCTTCAACAAAATCA+CGG | - | chr2.4:54728462-54728481 | MS.gene073364:CDS | 35.0% | |
| TTTAAGAAAAGATACGGTGG+TGG | - | chr2.4:54729077-54729096 | MS.gene073364:intron | 35.0% | |
| TTTCTTGTCGAAGATGGTTA+TGG | - | chr2.4:54727268-54727287 | MS.gene073364:intron | 35.0% | |
| ! | ATATTTAGTGAGAGCATGGA+AGG | + | chr2.4:54728841-54728860 | None:intergenic | 35.0% |
| ! | CAAGAAAATTGAAGGTGTGA+TGG | + | chr2.4:54727255-54727274 | None:intergenic | 35.0% |
| ! | GACTTTAAGAAAAGATACGG+TGG | - | chr2.4:54729074-54729093 | MS.gene073364:intron | 35.0% |
| ! | GTAGAAAATGATGGGATATC+AGG | + | chr2.4:54729405-54729424 | None:intergenic | 35.0% |
| !! | ACTGTAGGTGAACTTGTTAT+TGG | + | chr2.4:54727227-54727246 | None:intergenic | 35.0% |
| !! | ACTTATAAAACCGGCTTGTA+AGG | + | chr2.4:54727801-54727820 | None:intergenic | 35.0% |
| !! | CCGGTTTTATAAGTTGAGTT+AGG | - | chr2.4:54727807-54727826 | MS.gene073364:intron | 35.0% |
| !! | GTGAACTTGTTATTGGAAGA+AGG | + | chr2.4:54727220-54727239 | None:intergenic | 35.0% |
| !! | TACAGCTCCATTTTTCCAAA+AGG | - | chr2.4:54728575-54728594 | MS.gene073364:intron | 35.0% |
| !! | TCCGAAACCTTTTGGAAAAA+TGG | + | chr2.4:54728585-54728604 | None:intergenic | 35.0% |
| !! | TGTTTTCAGGCTATTGATAG+AGG | - | chr2.4:54730177-54730196 | MS.gene073364:intron | 35.0% |
| !!! | GGTACTGTTTTTTTAGGAAC+AGG | - | chr2.4:54729358-54729377 | MS.gene073364:intron | 35.0% |
| !!! | GTTTTTTTAGGAACAGGACT+TGG | - | chr2.4:54729364-54729383 | MS.gene073364:intron | 35.0% |
| !!! | TGTTTTTGGTTCTGGTTATC+TGG | - | chr2.4:54730417-54730436 | MS.gene073364:CDS | 35.0% |
| AAGGGTTAATCTTGTGTCTG+TGG | - | chr2.4:54728191-54728210 | MS.gene073364:intron | 40.0% | |
| AATGGATGGTCATTGATCAG+TGG | - | chr2.4:54728256-54728275 | MS.gene073364:CDS | 40.0% | |
| AGGAAAGTTACCAGTGAACT+CGG | + | chr2.4:54727167-54727186 | None:intergenic | 40.0% | |
| CACTCAACACAATGAAGTGT+TGG | + | chr2.4:54727703-54727722 | None:intergenic | 40.0% | |
| CAGCTAATAACACTTGTAGC+CGG | + | chr2.4:54727643-54727662 | None:intergenic | 40.0% | |
| CTAAAAATATGGGAGTGGAG+TGG | - | chr2.4:54729482-54729501 | MS.gene073364:intron | 40.0% | |
| GAGCTGTAGAAGTAGAAAGT+TGG | + | chr2.4:54728563-54728582 | None:intergenic | 40.0% | |
| GCCTTGTCTGTCAATAATCA+GGG | - | chr2.4:54728102-54728121 | MS.gene073364:intron | 40.0% | |
| GCTCAAGATTTCAGAAAGCA+AGG | - | chr2.4:54730326-54730345 | MS.gene073364:CDS | 40.0% | |
| GGATTGTAAGTTAGTAGGAC+AGG | + | chr2.4:54729447-54729466 | None:intergenic | 40.0% | |
| TAGGGTGCAATAGAAATGGA+TGG | - | chr2.4:54728242-54728261 | MS.gene073364:CDS | 40.0% | |
| TCCCTGATTATTGACAGACA+AGG | + | chr2.4:54728106-54728125 | None:intergenic | 40.0% | |
| TGAACTCAATACCTTGAGGT+AGG | - | chr2.4:54727941-54727960 | MS.gene073364:intron | 40.0% | |
| TGACTTTGTAACCTACCTCA+AGG | + | chr2.4:54727955-54727974 | None:intergenic | 40.0% | |
| TGCCCTGATACTCTCTATAA+AGG | + | chr2.4:54728772-54728791 | None:intergenic | 40.0% | |
| TTCATTGTGTTGAGTGCGAA+GGG | - | chr2.4:54727707-54727726 | MS.gene073364:intron | 40.0% | |
| TTGTGTTTGTGTGTGTTGCA+TGG | - | chr2.4:54727317-54727336 | MS.gene073364:intron | 40.0% | |
| TTTCAGAAAGCAAGGAACAC+AGG | - | chr2.4:54730334-54730353 | MS.gene073364:CDS | 40.0% | |
| ! | ACTCTCTATAAAGGCGTATC+TGG | + | chr2.4:54728763-54728782 | None:intergenic | 40.0% |
| ! | AGCCTTGTCTGTCAATAATC+AGG | - | chr2.4:54728101-54728120 | MS.gene073364:intron | 40.0% |
| ! | ATATACAGCTTTGTAGCTCG+TGG | - | chr2.4:54727118-54727137 | MS.gene073364:CDS | 40.0% |
| ! | CTGCTTGCTAACAGATTCTT+TGG | + | chr2.4:54729021-54729040 | None:intergenic | 40.0% |
| ! | GGAGTGGATTTGATTCTGAT+AGG | - | chr2.4:54729498-54729517 | MS.gene073364:intron | 40.0% |
| ! | TCAAATGTCACTTCATGACC+AGG | - | chr2.4:54727987-54728006 | MS.gene073364:intron | 40.0% |
| !! | AAAACCGGCTTGTAAGGTAA+GGG | + | chr2.4:54727795-54727814 | None:intergenic | 40.0% |
| !! | ACGCCTTTATAGAGAGTATC+AGG | - | chr2.4:54728766-54728785 | MS.gene073364:intron | 40.0% |
| !! | ATTTGGATTGGCAGTGAGTT+TGG | - | chr2.4:54728396-54728415 | MS.gene073364:intron | 40.0% |
| !! | CGCCTTTATAGAGAGTATCA+GGG | - | chr2.4:54728767-54728786 | MS.gene073364:intron | 40.0% |
| !! | GTTATCTGGCTCTCTATTTG+TGG | - | chr2.4:54730431-54730450 | MS.gene073364:CDS | 40.0% |
| !! | TAAAACCGGCTTGTAAGGTA+AGG | + | chr2.4:54727796-54727815 | None:intergenic | 40.0% |
| !! | TCAACACAATGAAGTGTTGG+AGG | + | chr2.4:54727700-54727719 | None:intergenic | 40.0% |
| !!! | GATTTTAGTGGTGGGTTTTG+TGG | - | chr2.4:54727458-54727477 | MS.gene073364:intron | 40.0% |
| AACTGAGCAGAGCTTTGCTT+TGG | + | chr2.4:54730071-54730090 | None:intergenic | 45.0% | |
| CTTCATTGTGTTGAGTGCGA+AGG | - | chr2.4:54727706-54727725 | MS.gene073364:intron | 45.0% | |
| GACACGTTCAAGGAAAGCAA+TGG | + | chr2.4:54729048-54729067 | None:intergenic | 45.0% | |
| GGCACTTCAAATTGAAGGCA+TGG | + | chr2.4:54729866-54729885 | None:intergenic | 45.0% | |
| GTATCTGGTGAGAATGTGAG+AGG | + | chr2.4:54728748-54728767 | None:intergenic | 45.0% | |
| TCATCGACACTGCTCGAAAA+TGG | + | chr2.4:54729562-54729581 | None:intergenic | 45.0% | |
| TCATTGTGTTGAGTGCGAAG+GGG | - | chr2.4:54727708-54727727 | MS.gene073364:intron | 45.0% | |
| TCTGATACCACATCTTCCGA+CGG | + | chr2.4:54730361-54730380 | None:intergenic | 45.0% | |
| TGACAGACAAGGCTACAAGA+TGG | + | chr2.4:54728095-54728114 | None:intergenic | 45.0% | |
| ! | AGTCAGCTTTGACACGTTCA+AGG | + | chr2.4:54729058-54729077 | None:intergenic | 45.0% |
| ! | CAGTGAGTTTGGTGGAATCA+CGG | - | chr2.4:54728407-54728426 | MS.gene073364:intron | 45.0% |
| ! | CTTCAAATTGAAGGCATGGC+TGG | + | chr2.4:54729862-54729881 | None:intergenic | 45.0% |
| ! | GCACTGGCACTTCAAATTGA+AGG | + | chr2.4:54729871-54729890 | None:intergenic | 45.0% |
| !! | ATCTGGCTCTCTATTTGTGG+TGG | - | chr2.4:54730434-54730453 | MS.gene073364:CDS | 45.0% |
| !! | GAAGCACTGACACAGACATT+GGG | - | chr2.4:54729741-54729760 | MS.gene073364:intron | 45.0% |
| !! | TATAAAATGTTTAATAATAT+GGG | - | chr2.4:54729202-54729221 | MS.gene073364:intron | 5.0% |
| !!! | ATTTTTTTATATTAAATTTG+GGG | - | chr2.4:54727852-54727871 | MS.gene073364:intron | 5.0% |
| CAAAACTGCCAGTGTGAGGA+AGG | + | chr2.4:54729706-54729725 | None:intergenic | 50.0% | |
| CACACATGTCAGTGCCATGT+TGG | - | chr2.4:54729810-54729829 | MS.gene073364:intron | 50.0% | |
| CAGACAAAACTGCCAGTGTG+AGG | + | chr2.4:54729710-54729729 | None:intergenic | 50.0% | |
| CATTGTGTTGAGTGCGAAGG+GGG | - | chr2.4:54727709-54727728 | MS.gene073364:intron | 50.0% | |
| CTGAAGACACTGAGCTGCAA+TGG | + | chr2.4:54727191-54727210 | None:intergenic | 50.0% | |
| CTTTGTAGCTCGTGGAACGA+TGG | - | chr2.4:54727126-54727145 | MS.gene073364:CDS | 50.0% | |
| GCTACCCTTACCTTACAAGC+CGG | - | chr2.4:54727788-54727807 | MS.gene073364:intron | 50.0% | |
| GGATGGTCATTGATCAGTGG+AGG | - | chr2.4:54728259-54728278 | MS.gene073364:CDS | 50.0% | |
| GGTGTGATGGTCACAACTGT+AGG | + | chr2.4:54727242-54727261 | None:intergenic | 50.0% | |
| TGTCTGTGTCAGTGCTTCGT+AGG | + | chr2.4:54729739-54729758 | None:intergenic | 50.0% | |
| ! | AGTGTTGGAGGCTGCAATGA+AGG | + | chr2.4:54727688-54727707 | None:intergenic | 50.0% |
| ! | GCGCACAAGTAAGTTGACCA+AGG | - | chr2.4:54730241-54730260 | MS.gene073364:intron | 50.0% |
| ! | GTCAGTGCCATGTTGGTGTT+TGG | - | chr2.4:54729817-54729836 | MS.gene073364:intron | 50.0% |
| !! | ATGGCACTGACATGTGTGGT+TGG | + | chr2.4:54729808-54729827 | None:intergenic | 50.0% |
| !! | CAACATGGCACTGACATGTG+TGG | + | chr2.4:54729812-54729831 | None:intergenic | 50.0% |
| !! | CGAAGCACTGACACAGACAT+TGG | - | chr2.4:54729740-54729759 | MS.gene073364:intron | 50.0% |
| !! | GTTGGTGCCAAACACCAACA+TGG | + | chr2.4:54729827-54729846 | None:intergenic | 50.0% |
| !! | TGGATTGGCAGTGAGTTTGG+TGG | - | chr2.4:54728399-54728418 | MS.gene073364:intron | 50.0% |
| !! | TGGCACTGACATGTGTGGTT+GGG | + | chr2.4:54729807-54729826 | None:intergenic | 50.0% |
| AGACACTGAGCTGCAATGGC+AGG | + | chr2.4:54727187-54727206 | None:intergenic | 55.0% | |
| AGCAAGGAACACAGGTCCGT+CGG | - | chr2.4:54730342-54730361 | MS.gene073364:CDS | 55.0% | |
| AGCTGCCTAATTGCGGCGTT+TGG | - | chr2.4:54727658-54727677 | MS.gene073364:intron | 55.0% | |
| GCAACCCAAACGCCGCAATT+AGG | + | chr2.4:54727666-54727685 | None:intergenic | 55.0% | |
| GCTGAGTACACCGAGTTCAC+TGG | - | chr2.4:54727154-54727173 | MS.gene073364:CDS | 55.0% | |
| GCTGCCTAATTGCGGCGTTT+GGG | - | chr2.4:54727659-54727678 | MS.gene073364:intron | 55.0% | |
| TCCTTGCTCCTTCCTCACAC+TGG | - | chr2.4:54729695-54729714 | MS.gene073364:intron | 55.0% | |
| CACAGGTCCGTCGGAAGATG+TGG | - | chr2.4:54730351-54730370 | MS.gene073364:CDS | 60.0% | |
| GCCAGTGTGAGGAAGGAGCA+AGG | + | chr2.4:54729699-54729718 | None:intergenic | 60.0% | |
| GGCTGGTGTCTGACACGTGT+TGG | + | chr2.4:54729845-54729864 | None:intergenic | 60.0% | |
| TGTGTTGAGTGCGAAGGGGG+TGG | - | chr2.4:54727712-54727731 | MS.gene073364:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 54727100 | 54730475 | 54727100 | ID=MS.gene073364 |
| chr2.4 | mRNA | 54727100 | 54730475 | 54727100 | ID=MS.gene073364.t1;Parent=MS.gene073364 |
| chr2.4 | exon | 54730292 | 54730475 | 54730292 | ID=MS.gene073364.t1.exon1;Parent=MS.gene073364.t1 |
| chr2.4 | CDS | 54730292 | 54730475 | 54730292 | ID=cds.MS.gene073364.t1;Parent=MS.gene073364.t1 |
| chr2.4 | exon | 54728431 | 54728572 | 54728431 | ID=MS.gene073364.t1.exon2;Parent=MS.gene073364.t1 |
| chr2.4 | CDS | 54728431 | 54728572 | 54728431 | ID=cds.MS.gene073364.t1;Parent=MS.gene073364.t1 |
| chr2.4 | exon | 54728217 | 54728337 | 54728217 | ID=MS.gene073364.t1.exon3;Parent=MS.gene073364.t1 |
| chr2.4 | CDS | 54728217 | 54728337 | 54728217 | ID=cds.MS.gene073364.t1;Parent=MS.gene073364.t1 |
| chr2.4 | exon | 54727327 | 54727389 | 54727327 | ID=MS.gene073364.t1.exon4;Parent=MS.gene073364.t1 |
| chr2.4 | CDS | 54727327 | 54727389 | 54727327 | ID=cds.MS.gene073364.t1;Parent=MS.gene073364.t1 |
| chr2.4 | exon | 54727100 | 54727249 | 54727100 | ID=MS.gene073364.t1.exon5;Parent=MS.gene073364.t1 |
| chr2.4 | CDS | 54727100 | 54727249 | 54727100 | ID=cds.MS.gene073364.t1;Parent=MS.gene073364.t1 |
| Gene Sequence |
| Protein sequence |
