Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073867.t1 | XP_013467109.1 | 99.2 | 125 | 1 | 0 | 1 | 125 | 1 | 125 | 1.60E-60 | 241.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073867.t1 | Q94CG2 | 67.2 | 125 | 39 | 1 | 1 | 125 | 1 | 123 | 4.1e-41 | 168.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073867.t1 | I3S539 | 99.2 | 125 | 1 | 0 | 1 | 125 | 1 | 125 | 1.2e-60 | 241.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051676 | MS.gene073867 | 0.808713 | 2.71E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene073867 | 0.800201 | 1.61E-48 | -1.69E-46 |
| MS.gene053045 | MS.gene073867 | 0.821989 | 3.01E-53 | -1.69E-46 |
| MS.gene055313 | MS.gene073867 | 0.803485 | 3.41E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene073867 | 0.802288 | 6.02E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene073867 | 0.800846 | 1.19E-48 | -1.69E-46 |
| MS.gene056699 | MS.gene073867 | 0.809468 | 1.86E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene073867 | 0.810678 | 1.02E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene073867 | 0.833899 | 4.09E-56 | -1.69E-46 |
| MS.gene059965 | MS.gene073867 | 0.812395 | 4.33E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073867.t1 | MTR_1g044145 | 99.200 | 125 | 1 | 0 | 1 | 125 | 1 | 125 | 3.70e-87 | 249 |
| MS.gene073867.t1 | MTR_1g070240 | 59.690 | 129 | 45 | 2 | 1 | 125 | 2 | 127 | 2.01e-44 | 141 |
| MS.gene073867.t1 | MTR_1g070240 | 61.386 | 101 | 32 | 2 | 1 | 97 | 2 | 99 | 5.07e-32 | 109 |
| MS.gene073867.t1 | MTR_1g070240 | 58.065 | 62 | 19 | 2 | 1 | 58 | 2 | 60 | 8.61e-12 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073867.t1 | AT4G14455 | 67.200 | 125 | 39 | 1 | 1 | 125 | 1 | 123 | 2.43e-58 | 176 |
| MS.gene073867.t1 | AT3G58170 | 60.800 | 125 | 46 | 1 | 1 | 125 | 1 | 122 | 9.30e-49 | 152 |
Find 32 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCATATACTACCTTATT+AGG | 0.142736 | 1.2:+27414971 | MS.gene073867:CDS |
| GTCTGGAGGAGGGTGGTTTA+AGG | 0.196647 | 1.2:+27413675 | MS.gene073867:CDS |
| ATGGAATCATTTACCTAATA+AGG | 0.207367 | 1.2:-27414984 | None:intergenic |
| AATTCATTAGGGTAATAAAA+TGG | 0.317654 | 1.2:+27414742 | MS.gene073867:intron |
| TTTAGATGGTCTTGATAGTC+TGG | 0.346866 | 1.2:+27413658 | MS.gene073867:CDS |
| ACTAATCAATGAGTTATAGA+AGG | 0.361044 | 1.2:+27411649 | None:intergenic |
| TTACTTGATCAACAGTTAAC+AGG | 0.362727 | 1.2:+27414596 | MS.gene073867:intron |
| TCTGGAGGAGGGTGGTTTAA+GGG | 0.370422 | 1.2:+27413676 | MS.gene073867:CDS |
| ACCATCTAAAAGTGATGATC+TGG | 0.403747 | 1.2:-27413645 | None:intergenic |
| TGGATCAAGGGGTATGATGT+TGG | 0.411208 | 1.2:+27414766 | MS.gene073867:CDS |
| TCTGTCGTGCAGAGTGTCTA+TGG | 0.436752 | 1.2:-27413747 | None:intergenic |
| GGATCAAGGGGTATGATGTT+GGG | 0.453741 | 1.2:+27414767 | MS.gene073867:CDS |
| GTAATAAAATGGATGGATCA+AGG | 0.462679 | 1.2:+27414753 | MS.gene073867:CDS |
| GTCATAACAGTATGCTCGAT+CGG | 0.499149 | 1.2:+27414642 | MS.gene073867:CDS |
| TAATAAAATGGATGGATCAA+GGG | 0.502217 | 1.2:+27414754 | MS.gene073867:CDS |
| CATTAGGGTAATAAAATGGA+TGG | 0.512084 | 1.2:+27414746 | MS.gene073867:intron |
| AAGGTAGTATATGAATATGA+AGG | 0.530565 | 1.2:-27414965 | None:intergenic |
| TACCTTCTTGAATCGATCCA+TGG | 0.534362 | 1.2:-27414792 | None:intergenic |
| TCATAACAGTATGCTCGATC+GGG | 0.535450 | 1.2:+27414643 | MS.gene073867:CDS |
| AAGGAAAACATGCTCACTTG+TGG | 0.536458 | 1.2:+27414927 | MS.gene073867:CDS |
| TGGTCTTGATAGTCTGGAGG+AGG | 0.542729 | 1.2:+27413664 | MS.gene073867:CDS |
| GGGTATGATGTTGGGAACCA+TGG | 0.547345 | 1.2:+27414775 | MS.gene073867:CDS |
| AGGAAAACATGCTCACTTGT+GGG | 0.548660 | 1.2:+27414928 | MS.gene073867:CDS |
| AATAAAATGGATGGATCAAG+GGG | 0.563592 | 1.2:+27414755 | MS.gene073867:CDS |
| AAAGTGATGATCTGGATGAC+CGG | 0.575798 | 1.2:-27413637 | None:intergenic |
| CTTGATAGTCTGGAGGAGGG+TGG | 0.583431 | 1.2:+27413668 | MS.gene073867:CDS |
| AGATGGTCTTGATAGTCTGG+AGG | 0.606964 | 1.2:+27413661 | MS.gene073867:CDS |
| AACCATGGATCGATTCAAGA+AGG | 0.613381 | 1.2:+27414790 | MS.gene073867:CDS |
| AACAGGTGATATACATGAGG+AGG | 0.637938 | 1.2:+27414613 | MS.gene073867:CDS |
| TAACAGTATGCTCGATCGGG+TGG | 0.649983 | 1.2:+27414646 | MS.gene073867:CDS |
| GGTCTTGATAGTCTGGAGGA+GGG | 0.664369 | 1.2:+27413665 | MS.gene073867:CDS |
| GTTAACAGGTGATATACATG+AGG | 0.676350 | 1.2:+27414610 | MS.gene073867:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACAGAAAATTATAAATA+GGG | - | chr1.2:27414137-27414156 | None:intergenic | 10.0% |
| !!! | ATAATAATGAAATTTTGTTT+CGG | + | chr1.2:27413964-27413983 | MS.gene073867:intron | 10.0% |
| !!! | TTATCATTAATAATTCATTT+TGG | + | chr1.2:27413394-27413413 | MS.gene073867:intron | 10.0% |
| !!! | TTTAATTTGAATTTTTGTTT+TGG | + | chr1.2:27414085-27414104 | MS.gene073867:intron | 10.0% |
| !! | AGAAAAGTAATAAAAATTAG+TGG | - | chr1.2:27413500-27413519 | None:intergenic | 15.0% |
| !! | ATATTAAAAGTCAATAGATA+AGG | - | chr1.2:27414576-27414595 | None:intergenic | 15.0% |
| !! | GAATACAGAAAATTATAAAT+AGG | - | chr1.2:27414138-27414157 | None:intergenic | 15.0% |
| !!! | ATAGTTTTAAATTGAAAATC+AGG | + | chr1.2:27412867-27412886 | MS.gene073867:intron | 15.0% |
| !!! | TTTTGAATGATTGATTTTTA+GGG | + | chr1.2:27412173-27412192 | MS.gene073867:intron | 15.0% |
| !!! | TTTTTGAATGATTGATTTTT+AGG | + | chr1.2:27412172-27412191 | MS.gene073867:intron | 15.0% |
| !! | AATTCATTAGGGTAATAAAA+TGG | + | chr1.2:27414742-27414761 | MS.gene073867:intron | 20.0% |
| !! | GAATTGGAAAAATATATAAG+CGG | - | chr1.2:27411718-27411737 | None:intergenic | 20.0% |
| !! | TAAATTAAATGAACGCAAAA+TGG | - | chr1.2:27411757-27411776 | None:intergenic | 20.0% |
| !! | TAATTTCTTATCTTAACATC+TGG | + | chr1.2:27413856-27413875 | MS.gene073867:intron | 20.0% |
| !! | TATATAAGCGGAAATTAAAA+TGG | - | chr1.2:27411706-27411725 | None:intergenic | 20.0% |
| !! | TATTCATATACTACCTTATT+AGG | + | chr1.2:27414971-27414990 | MS.gene073867:CDS | 20.0% |
| !! | TCAATGTATTTGTAGATAAA+AGG | + | chr1.2:27414225-27414244 | MS.gene073867:intron | 20.0% |
| !!! | GTATAAAAACTGAATTTTGT+AGG | + | chr1.2:27414885-27414904 | MS.gene073867:intron | 20.0% |
| !!! | TCATTCTTTTCAATTTATTC+AGG | + | chr1.2:27413350-27413369 | MS.gene073867:intron | 20.0% |
| ! | AAAATCAGGATAAACATTTG+AGG | + | chr1.2:27412881-27412900 | MS.gene073867:intron | 25.0% |
| ! | AAATGAAGTCTTCTAATCAA+TGG | - | chr1.2:27413533-27413552 | None:intergenic | 25.0% |
| ! | AAGGTAGTATATGAATATGA+AGG | - | chr1.2:27414968-27414987 | None:intergenic | 25.0% |
| ! | AAGTAAAAGCAGATAAAATG+AGG | - | chr1.2:27414839-27414858 | None:intergenic | 25.0% |
| ! | ACATAACTTAGTGTAATCAT+AGG | + | chr1.2:27412539-27412558 | MS.gene073867:intron | 25.0% |
| ! | CATAACTTAGTGTAATCATA+GGG | + | chr1.2:27412540-27412559 | MS.gene073867:intron | 25.0% |
| ! | CTGAAATATTGGTAAGAAAT+TGG | + | chr1.2:27413995-27414014 | MS.gene073867:intron | 25.0% |
| ! | CTTACTAGTGTTAATATACA+AGG | - | chr1.2:27413590-27413609 | None:intergenic | 25.0% |
| ! | GAGTAAGAAATATGAAACAT+TGG | + | chr1.2:27414437-27414456 | MS.gene073867:intron | 25.0% |
| ! | GGATAGTATTAAATCTTGTT+TGG | + | chr1.2:27412105-27412124 | MS.gene073867:intron | 25.0% |
| ! | TAATAAAATGGATGGATCAA+GGG | + | chr1.2:27414754-27414773 | MS.gene073867:CDS | 25.0% |
| ! | TAATGATTGCATCAACAAAA+TGG | - | chr1.2:27414542-27414561 | None:intergenic | 25.0% |
| ! | TTGAAATAACTCAATGCATA+AGG | - | chr1.2:27412959-27412978 | None:intergenic | 25.0% |
| ! | TTGTTGATGCAATCATTAAA+AGG | + | chr1.2:27414544-27414563 | MS.gene073867:intron | 25.0% |
| ! | TTGTTTATCAAGATTGTATG+TGG | + | chr1.2:27414303-27414322 | MS.gene073867:intron | 25.0% |
| !! | GAAATGAAAATAAGTTGAAG+AGG | + | chr1.2:27412084-27412103 | MS.gene073867:intron | 25.0% |
| !! | TAAATCATTTTCCGATATTG+CGG | - | chr1.2:27414863-27414882 | None:intergenic | 25.0% |
| !! | TTTTCAAAAACAGAGATAAC+CGG | + | chr1.2:27413618-27413637 | MS.gene073867:intron | 25.0% |
| !!! | AAACTTACTTGCTTTAGAAA+AGG | - | chr1.2:27413798-27413817 | None:intergenic | 25.0% |
| !!! | CTAGTTATTTTTGCTGAAAA+CGG | + | chr1.2:27413561-27413580 | MS.gene073867:intron | 25.0% |
| !!! | GCTTTAAAAACTGAATAACT+AGG | - | chr1.2:27412764-27412783 | None:intergenic | 25.0% |
| !!! | GTTTATAATTTGCTATTTGC+TGG | + | chr1.2:27414331-27414350 | MS.gene073867:intron | 25.0% |
| !!! | TGCGAGAGTTTTTTTTTTTT+CGG | + | chr1.2:27412228-27412247 | MS.gene073867:intron | 25.0% |
| !!! | TTTTATTTCCTAATTTCCAG+CGG | + | chr1.2:27413165-27413184 | MS.gene073867:intron | 25.0% |
| !!! | TTTTTGAGAAGAAATCAACA+AGG | + | chr1.2:27414908-27414927 | MS.gene073867:CDS | 25.0% |
| !!! | TTTTTTTTTCGGTTTACCAT+AGG | + | chr1.2:27412239-27412258 | MS.gene073867:intron | 25.0% |
| AAAAAAAAAAACTCTCGCAG+CGG | - | chr1.2:27412227-27412246 | None:intergenic | 30.0% | |
| AACAGTAGAGGAAAATTCAT+TGG | + | chr1.2:27413068-27413087 | MS.gene073867:intron | 30.0% | |
| AACTGAATAACTAGGAACTA+TGG | - | chr1.2:27412756-27412775 | None:intergenic | 30.0% | |
| AATAAAATGGATGGATCAAG+GGG | + | chr1.2:27414755-27414774 | MS.gene073867:CDS | 30.0% | |
| AATCTGTAGAATCTATTACC+TGG | + | chr1.2:27413040-27413059 | MS.gene073867:intron | 30.0% | |
| AATGAGAGAGATAAACACAA+TGG | + | chr1.2:27412295-27412314 | MS.gene073867:intron | 30.0% | |
| ATCTGTAGAATCTATTACCT+GGG | + | chr1.2:27413041-27413060 | MS.gene073867:intron | 30.0% | |
| ATGAGAGAGATAAACACAAT+GGG | + | chr1.2:27412296-27412315 | MS.gene073867:intron | 30.0% | |
| ATTCCACTGTGAATTCATTA+GGG | + | chr1.2:27414731-27414750 | MS.gene073867:intron | 30.0% | |
| CATTAGGGTAATAAAATGGA+TGG | + | chr1.2:27414746-27414765 | MS.gene073867:intron | 30.0% | |
| CTGAAATCTTGATTGTAAGT+TGG | - | chr1.2:27412139-27412158 | None:intergenic | 30.0% | |
| GATTCACAAATGATGATACA+GGG | - | chr1.2:27412809-27412828 | None:intergenic | 30.0% | |
| GCTTATTTAAGCTTATCTAC+CGG | - | chr1.2:27411890-27411909 | None:intergenic | 30.0% | |
| GTAATAAAATGGATGGATCA+AGG | + | chr1.2:27414753-27414772 | MS.gene073867:CDS | 30.0% | |
| TTAAATAAGCCAATCCAAAC+AGG | + | chr1.2:27411900-27411919 | MS.gene073867:intron | 30.0% | |
| TTACTTGATCAACAGTTAAC+AGG | + | chr1.2:27414596-27414615 | MS.gene073867:intron | 30.0% | |
| TTCACGATTCATACTGAATA+AGG | - | chr1.2:27412067-27412086 | None:intergenic | 30.0% | |
| ! | CTGTTATGTTTCTACAAACT+TGG | + | chr1.2:27412992-27413011 | MS.gene073867:intron | 30.0% |
| !! | ACTTGTTGTATGCTATCATA+TGG | + | chr1.2:27413131-27413150 | MS.gene073867:intron | 30.0% |
| !! | ATGATTGATTTTTAGGGAGA+AGG | + | chr1.2:27412179-27412198 | MS.gene073867:intron | 30.0% |
| !! | GGTAAACTTTTAACTCAAGT+TGG | - | chr1.2:27413479-27413498 | None:intergenic | 30.0% |
| !! | TGATTGATTTTTAGGGAGAA+GGG | + | chr1.2:27412180-27412199 | MS.gene073867:intron | 30.0% |
| !! | TGTGAATCGATTTTTACTCT+AGG | + | chr1.2:27412821-27412840 | MS.gene073867:intron | 30.0% |
| !! | TTGGTTTAGTTCTGTCAAAT+CGG | + | chr1.2:27413087-27413106 | MS.gene073867:intron | 30.0% |
| AAATCTGCGATTGCAAATCA+AGG | + | chr1.2:27413291-27413310 | MS.gene073867:intron | 35.0% | |
| ACACTTTAGTGCATTGAAGT+TGG | + | chr1.2:27413906-27413925 | MS.gene073867:intron | 35.0% | |
| ACCATCTAAAAGTGATGATC+TGG | - | chr1.2:27413648-27413667 | None:intergenic | 35.0% | |
| ACTATGCTCTGTAATCCAAT+AGG | - | chr1.2:27414501-27414520 | None:intergenic | 35.0% | |
| AGGAACTATGGAAAACCAAT+GGG | - | chr1.2:27412744-27412763 | None:intergenic | 35.0% | |
| ATAAAGCACGGATGCAAATA+TGG | + | chr1.2:27412467-27412486 | MS.gene073867:intron | 35.0% | |
| ATCAAGATTGTATGTGGACA+TGG | + | chr1.2:27414309-27414328 | MS.gene073867:intron | 35.0% | |
| CAAATATTCAATCACGCTCA+TGG | - | chr1.2:27413437-27413456 | None:intergenic | 35.0% | |
| CATGAGCGTGATTGAATATT+TGG | + | chr1.2:27413435-27413454 | MS.gene073867:intron | 35.0% | |
| CGATTCACAAATGATGATAC+AGG | - | chr1.2:27412810-27412829 | None:intergenic | 35.0% | |
| CGGAATTAGTTACTCCAATT+CGG | - | chr1.2:27412032-27412051 | None:intergenic | 35.0% | |
| CTTGTAGGTAATCCTATTAG+AGG | + | chr1.2:27412430-27412449 | MS.gene073867:intron | 35.0% | |
| GAATAAGGCACATAAATTCG+CGG | - | chr1.2:27412052-27412071 | None:intergenic | 35.0% | |
| GACACAAGTGATAGATTAGT+GGG | - | chr1.2:27412367-27412386 | None:intergenic | 35.0% | |
| GACAGTAGATGAAGTAAATC+CGG | - | chr1.2:27412271-27412290 | None:intergenic | 35.0% | |
| GATTCCACTGTGAATTCATT+AGG | + | chr1.2:27414730-27414749 | MS.gene073867:intron | 35.0% | |
| GTAGATAAAAGGCCATCAAA+AGG | + | chr1.2:27414236-27414255 | MS.gene073867:intron | 35.0% | |
| GTGTTTATCTCTCTCATTGA+TGG | - | chr1.2:27412293-27412312 | None:intergenic | 35.0% | |
| GTTAACAGGTGATATACATG+AGG | + | chr1.2:27414610-27414629 | MS.gene073867:intron | 35.0% | |
| TAAGAAATTGGTTGCTCTGT+TGG | + | chr1.2:27414007-27414026 | MS.gene073867:intron | 35.0% | |
| TAGGAACTATGGAAAACCAA+TGG | - | chr1.2:27412745-27412764 | None:intergenic | 35.0% | |
| TATTTGCATCCGTGCTTTAT+AGG | - | chr1.2:27412467-27412486 | None:intergenic | 35.0% | |
| TCAGAAATTATGCAGCCTAT+TGG | + | chr1.2:27414483-27414502 | MS.gene073867:intron | 35.0% | |
| TCTGTAGAATCTATTACCTG+GGG | + | chr1.2:27413042-27413061 | MS.gene073867:intron | 35.0% | |
| TGACACAAGTGATAGATTAG+TGG | - | chr1.2:27412368-27412387 | None:intergenic | 35.0% | |
| TGAGAGAGATAAACACAATG+GGG | + | chr1.2:27412297-27412316 | MS.gene073867:intron | 35.0% | |
| TGTCTTGACACATGTACATA+TGG | + | chr1.2:27413017-27413036 | MS.gene073867:intron | 35.0% | |
| TTACCCTAATGAATTCACAG+TGG | - | chr1.2:27414737-27414756 | None:intergenic | 35.0% | |
| TTGTGTCAATCTCTCGTTTA+TGG | + | chr1.2:27412380-27412399 | MS.gene073867:intron | 35.0% | |
| ! | GAATTCTCAAAGCCTTTTGA+TGG | - | chr1.2:27414251-27414270 | None:intergenic | 35.0% |
| ! | GCTTTTACTTACCGCAATAT+CGG | + | chr1.2:27414849-27414868 | MS.gene073867:intron | 35.0% |
| ! | GTTTGGATTTGCTCCATTTA+CGG | - | chr1.2:27412407-27412426 | None:intergenic | 35.0% |
| ! | TGAGAATTCATGTTTGTTGC+AGG | + | chr1.2:27414262-27414281 | MS.gene073867:intron | 35.0% |
| ! | TTGGGTTGTTCTTAGTGATT+AGG | + | chr1.2:27411933-27411952 | MS.gene073867:intron | 35.0% |
| ! | TTTAGATGGTCTTGATAGTC+TGG | + | chr1.2:27413658-27413677 | MS.gene073867:CDS | 35.0% |
| !! | CTGTTGGACTGTTTCTAATT+TGG | + | chr1.2:27414023-27414042 | MS.gene073867:intron | 35.0% |
| !! | TAACTCAAGTTGGTTCTCAA+CGG | - | chr1.2:27413469-27413488 | None:intergenic | 35.0% |
| !! | TCCAGATCATCACTTTTAGA+TGG | + | chr1.2:27413644-27413663 | MS.gene073867:CDS | 35.0% |
| !! | TGCTACATCACTATTTCTAC+CGG | - | chr1.2:27411970-27411989 | None:intergenic | 35.0% |
| !! | TGGTTTAGTTCTGTCAAATC+GGG | + | chr1.2:27413088-27413107 | MS.gene073867:intron | 35.0% |
| !!! | TTTTTTCGGTTTACCATAGG+TGG | + | chr1.2:27412242-27412261 | MS.gene073867:intron | 35.0% |
| AAACACAATGGGGAGATTAG+TGG | + | chr1.2:27412307-27412326 | MS.gene073867:intron | 40.0% | |
| AAAGTGATGATCTGGATGAC+CGG | - | chr1.2:27413640-27413659 | None:intergenic | 40.0% | |
| AACACAATGGGGAGATTAGT+GGG | + | chr1.2:27412308-27412327 | MS.gene073867:intron | 40.0% | |
| AACAGGTGATATACATGAGG+AGG | + | chr1.2:27414613-27414632 | MS.gene073867:CDS | 40.0% | |
| AAGAACAACCCAACCACTAA+AGG | - | chr1.2:27411926-27411945 | None:intergenic | 40.0% | |
| AAGGAAAACATGCTCACTTG+TGG | + | chr1.2:27414927-27414946 | MS.gene073867:CDS | 40.0% | |
| AGATTAGTGGGATCCATTAG+TGG | + | chr1.2:27412320-27412339 | MS.gene073867:intron | 40.0% | |
| AGGAAAACATGCTCACTTGT+GGG | + | chr1.2:27414928-27414947 | MS.gene073867:CDS | 40.0% | |
| ATACAACATGGACACTGACA+CGG | + | chr1.2:27412497-27412516 | MS.gene073867:intron | 40.0% | |
| ATAGTGTGGGACACTAAATG+TGG | + | chr1.2:27412646-27412665 | MS.gene073867:intron | 40.0% | |
| ATATTCAATCACGCTCATGG+TGG | - | chr1.2:27413434-27413453 | None:intergenic | 40.0% | |
| ATTAGTGGGATCCATTAGTG+GGG | + | chr1.2:27412322-27412341 | MS.gene073867:intron | 40.0% | |
| CTGTAGAATCTATTACCTGG+GGG | + | chr1.2:27413043-27413062 | MS.gene073867:intron | 40.0% | |
| GAAAAGCTTCAAATTCCAGC+TGG | - | chr1.2:27412680-27412699 | None:intergenic | 40.0% | |
| GAACTATGGAAAACCAATGG+GGG | - | chr1.2:27412742-27412761 | None:intergenic | 40.0% | |
| GATTAGTGGGATCCATTAGT+GGG | + | chr1.2:27412321-27412340 | MS.gene073867:intron | 40.0% | |
| GCAAATCCAAACTCTCTTGT+AGG | + | chr1.2:27412415-27412434 | MS.gene073867:intron | 40.0% | |
| GGAACTATGGAAAACCAATG+GGG | - | chr1.2:27412743-27412762 | None:intergenic | 40.0% | |
| GGATTACCTACAAGAGAGTT+TGG | - | chr1.2:27412424-27412443 | None:intergenic | 40.0% | |
| GTCATAACAGTATGCTCGAT+CGG | + | chr1.2:27414642-27414661 | MS.gene073867:CDS | 40.0% | |
| TACCTTCTTGAATCGATCCA+TGG | - | chr1.2:27414795-27414814 | None:intergenic | 40.0% | |
| TCATAACAGTATGCTCGATC+GGG | + | chr1.2:27414643-27414662 | MS.gene073867:CDS | 40.0% | |
| TCATGATACCGCTGGAAATT+AGG | - | chr1.2:27413176-27413195 | None:intergenic | 40.0% | |
| TCTCGTTTATGGACCGTAAA+TGG | + | chr1.2:27412391-27412410 | MS.gene073867:intron | 40.0% | |
| TGTAATCATAGGGATCGTGT+TGG | + | chr1.2:27412550-27412569 | MS.gene073867:intron | 40.0% | |
| TGTAGAATCTATTACCTGGG+GGG | + | chr1.2:27413044-27413063 | MS.gene073867:intron | 40.0% | |
| TTCAACTCGTTCAACCGAAT+TGG | + | chr1.2:27412015-27412034 | MS.gene073867:intron | 40.0% | |
| ! | AACCATGGATCGATTCAAGA+AGG | + | chr1.2:27414790-27414809 | MS.gene073867:CDS | 40.0% |
| ! | AATCCTATTAGAGGTGTGTG+TGG | + | chr1.2:27412439-27412458 | MS.gene073867:intron | 40.0% |
| ! | ATCCTATTAGAGGTGTGTGT+GGG | + | chr1.2:27412440-27412459 | MS.gene073867:intron | 40.0% |
| ! | CGGATCACTTGCTGAAATAT+TGG | + | chr1.2:27413984-27414003 | MS.gene073867:intron | 40.0% |
| !! | GTGGGACTCATTTTAACAAG+TGG | - | chr1.2:27412349-27412368 | None:intergenic | 40.0% |
| AAATGGCGAAGATCGTGCAT+TGG | - | chr1.2:27411740-27411759 | None:intergenic | 45.0% | |
| ACGGATGCAAATATGGACAC+CGG | + | chr1.2:27412474-27412493 | MS.gene073867:intron | 45.0% | |
| AGTCTCACACATGCTTATGC+CGG | + | chr1.2:27411868-27411887 | MS.gene073867:intron | 45.0% | |
| AGTGTCAGTGCTTCATAGTG+TGG | + | chr1.2:27412632-27412651 | MS.gene073867:intron | 45.0% | |
| ATATGTTGCCATGTCGCAAC+TGG | + | chr1.2:27414376-27414395 | MS.gene073867:intron | 45.0% | |
| ATGGAAAACCAATGGGGGTT+GGG | - | chr1.2:27412737-27412756 | None:intergenic | 45.0% | |
| CAAACAGGCCTTTAGTGGTT+GGG | + | chr1.2:27411915-27411934 | MS.gene073867:intron | 45.0% | |
| CAATCCAAACAGGCCTTTAG+TGG | + | chr1.2:27411910-27411929 | MS.gene073867:intron | 45.0% | |
| CACTAAAGGCCTGTTTGGAT+TGG | - | chr1.2:27411912-27411931 | None:intergenic | 45.0% | |
| CATTAGACTCATGATACCGC+TGG | - | chr1.2:27413184-27413203 | None:intergenic | 45.0% | |
| CGAAGATCGTGCATTGGAAT+TGG | - | chr1.2:27411734-27411753 | None:intergenic | 45.0% | |
| CTTCAAATTCCAGCTGGAAG+AGG | - | chr1.2:27412674-27412693 | None:intergenic | 45.0% | |
| GATTAGGTGTATCCCAGTGA+CGG | - | chr1.2:27412607-27412626 | None:intergenic | 45.0% | |
| GTCAGTGTCCATGTTGTATC+CGG | - | chr1.2:27412496-27412515 | None:intergenic | 45.0% | |
| GTGTCAGTGCTTCATAGTGT+GGG | + | chr1.2:27412633-27412652 | MS.gene073867:intron | 45.0% | |
| TAACAAGTGGACCCCACTAA+TGG | - | chr1.2:27412336-27412355 | None:intergenic | 45.0% | |
| TATGGAAAACCAATGGGGGT+TGG | - | chr1.2:27412738-27412757 | None:intergenic | 45.0% | |
| TATGGACACCGGATACAACA+TGG | + | chr1.2:27412485-27412504 | MS.gene073867:intron | 45.0% | |
| TGTGTGGGACCTATAAAGCA+CGG | + | chr1.2:27412455-27412474 | MS.gene073867:intron | 45.0% | |
| ! | AGATGGTCTTGATAGTCTGG+AGG | + | chr1.2:27413661-27413680 | MS.gene073867:CDS | 45.0% |
| ! | GGATCAAGGGGTATGATGTT+GGG | + | chr1.2:27414767-27414786 | MS.gene073867:CDS | 45.0% |
| ! | TGATTAGGTTGTGCTTGTGC+CGG | + | chr1.2:27411948-27411967 | MS.gene073867:intron | 45.0% |
| ! | TGGATCAAGGGGTATGATGT+TGG | + | chr1.2:27414766-27414785 | MS.gene073867:CDS | 45.0% |
| !! | TATGAAGCACTGACACTCCT+CGG | - | chr1.2:27412629-27412648 | None:intergenic | 45.0% |
| AATGTGGTACCTCTTCCAGC+TGG | + | chr1.2:27412662-27412681 | MS.gene073867:intron | 50.0% | |
| ACTGGGATACACCTAATCCG+AGG | + | chr1.2:27412609-27412628 | MS.gene073867:intron | 50.0% | |
| CCAAACAGGCCTTTAGTGGT+TGG | + | chr1.2:27411914-27411933 | MS.gene073867:intron | 50.0% | |
| CCAACCACTAAAGGCCTGTT+TGG | - | chr1.2:27411917-27411936 | None:intergenic | 50.0% | |
| GGGTATGATGTTGGGAACCA+TGG | + | chr1.2:27414775-27414794 | MS.gene073867:CDS | 50.0% | |
| GGTTTACCATAGGTGGAGTC+CGG | + | chr1.2:27412249-27412268 | MS.gene073867:intron | 50.0% | |
| GTAAATCCGGACTCCACCTA+TGG | - | chr1.2:27412258-27412277 | None:intergenic | 50.0% | |
| GTCCCACACACACCTCTAAT+AGG | - | chr1.2:27412445-27412464 | None:intergenic | 50.0% | |
| TAACAGTATGCTCGATCGGG+TGG | + | chr1.2:27414646-27414665 | MS.gene073867:CDS | 50.0% | |
| TCTGGAGGAGGGTGGTTTAA+GGG | + | chr1.2:27413676-27413695 | MS.gene073867:CDS | 50.0% | |
| ! | CATAGGGATCGTGTTGGTGT+CGG | + | chr1.2:27412556-27412575 | MS.gene073867:intron | 50.0% |
| ! | GAAGCTTTTCGCCAAGCTGT+GGG | + | chr1.2:27412690-27412709 | MS.gene073867:intron | 50.0% |
| ! | GGTCTTGATAGTCTGGAGGA+GGG | + | chr1.2:27413665-27413684 | MS.gene073867:CDS | 50.0% |
| ! | TCTGTCGTGCAGAGTGTCTA+TGG | - | chr1.2:27413750-27413769 | None:intergenic | 50.0% |
| ! | TGAAGCTTTTCGCCAAGCTG+TGG | + | chr1.2:27412689-27412708 | MS.gene073867:intron | 50.0% |
| ! | TGGTCTTGATAGTCTGGAGG+AGG | + | chr1.2:27413664-27413683 | MS.gene073867:CDS | 50.0% |
| GGGGGTTGGGTCTAGCAAAA+GGG | - | chr1.2:27412724-27412743 | None:intergenic | 55.0% | |
| GGGGTTGGGTCTAGCAAAAG+GGG | - | chr1.2:27412723-27412742 | None:intergenic | 55.0% | |
| GTAGCATGCCAGTTGCGACA+TGG | - | chr1.2:27414387-27414406 | None:intergenic | 55.0% | |
| GTCTGGAGGAGGGTGGTTTA+AGG | + | chr1.2:27413675-27413694 | MS.gene073867:CDS | 55.0% | |
| TACCTGGGGGGAAACAGTAG+AGG | + | chr1.2:27413056-27413075 | MS.gene073867:intron | 55.0% | |
| TGGGGGTTGGGTCTAGCAAA+AGG | - | chr1.2:27412725-27412744 | None:intergenic | 55.0% | |
| TTCCTCTACTGTTTCCCCCC+AGG | - | chr1.2:27413061-27413080 | None:intergenic | 55.0% | |
| TTGCTAGACCCAACCCCCAT+TGG | + | chr1.2:27412726-27412745 | MS.gene073867:intron | 55.0% | |
| ! | CTTGATAGTCTGGAGGAGGG+TGG | + | chr1.2:27413668-27413687 | MS.gene073867:CDS | 55.0% |
| ! | GCACTGACACTCCTCGGATT+AGG | - | chr1.2:27412623-27412642 | None:intergenic | 55.0% |
| GACACGTGTCGGACACGTGT+CGG | - | chr1.2:27412585-27412604 | None:intergenic | 60.0% | |
| TCCGACACGTGTCCGTCACT+GGG | + | chr1.2:27412592-27412611 | MS.gene073867:intron | 60.0% | |
| !! | TCCCAGTGACGGACACGTGT+CGG | - | chr1.2:27412596-27412615 | None:intergenic | 60.0% |
| GGGGCTAGACTCCCACAGCT+TGG | - | chr1.2:27412704-27412723 | None:intergenic | 65.0% | |
| GTCCGACACGTGTCCGTCAC+TGG | + | chr1.2:27412591-27412610 | MS.gene073867:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 27411657 | 27414996 | 27411657 | ID=MS.gene073867 |
| chr1.2 | mRNA | 27411657 | 27414996 | 27411657 | ID=MS.gene073867.t1;Parent=MS.gene073867 |
| chr1.2 | exon | 27411657 | 27411670 | 27411657 | ID=MS.gene073867.t1.exon1;Parent=MS.gene073867.t1 |
| chr1.2 | CDS | 27411657 | 27411670 | 27411657 | ID=cds.MS.gene073867.t1;Parent=MS.gene073867.t1 |
| chr1.2 | exon | 27413631 | 27413787 | 27413631 | ID=MS.gene073867.t1.exon2;Parent=MS.gene073867.t1 |
| chr1.2 | CDS | 27413631 | 27413787 | 27413631 | ID=cds.MS.gene073867.t1;Parent=MS.gene073867.t1 |
| chr1.2 | exon | 27414611 | 27414667 | 27414611 | ID=MS.gene073867.t1.exon3;Parent=MS.gene073867.t1 |
| chr1.2 | CDS | 27414611 | 27414667 | 27414611 | ID=cds.MS.gene073867.t1;Parent=MS.gene073867.t1 |
| chr1.2 | exon | 27414752 | 27414811 | 27414752 | ID=MS.gene073867.t1.exon4;Parent=MS.gene073867.t1 |
| chr1.2 | CDS | 27414752 | 27414811 | 27414752 | ID=cds.MS.gene073867.t1;Parent=MS.gene073867.t1 |
| chr1.2 | exon | 27414907 | 27414996 | 27414907 | ID=MS.gene073867.t1.exon5;Parent=MS.gene073867.t1 |
| chr1.2 | CDS | 27414907 | 27414996 | 27414907 | ID=cds.MS.gene073867.t1;Parent=MS.gene073867.t1 |
| Gene Sequence |
| Protein sequence |
