Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073882.t1 | XP_013460120.1 | 90.3 | 62 | 6 | 0 | 169 | 230 | 1184 | 1245 | 2.70E-21 | 112.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073882.t1 | F4JAA5 | 69.4 | 62 | 19 | 0 | 169 | 230 | 1197 | 1258 | 4.5e-17 | 89.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073882.t1 | A0A072UXI0 | 90.3 | 62 | 6 | 0 | 169 | 230 | 1184 | 1245 | 1.9e-21 | 112.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene073882 | 0.819752 | 9.85E-53 | -1.69E-46 |
| MS.gene050156 | MS.gene073882 | 0.821146 | 4.72E-53 | -1.69E-46 |
| MS.gene050844 | MS.gene073882 | 0.806403 | 8.37E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene073882 | 0.802973 | 4.35E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene073882 | 0.846402 | 2.22E-59 | -1.69E-46 |
| MS.gene052773 | MS.gene073882 | 0.820912 | 5.34E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene073882 | 0.810972 | 8.84E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene073882 | 0.803937 | 2.75E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene073882 | 0.821636 | 3.63E-53 | -1.69E-46 |
| MS.gene054467 | MS.gene073882 | 0.81676 | 4.68E-52 | -1.69E-46 |
| MS.gene054559 | MS.gene073882 | 0.803943 | 2.74E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene073882 | 0.80402 | 2.64E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene073882 | 0.801447 | 8.97E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene073882 | 0.845247 | 4.57E-59 | -1.69E-46 |
| MS.gene05604 | MS.gene073882 | 0.807786 | 4.26E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene073882 | 0.808088 | 3.68E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene073882 | 0.828989 | 6.61E-55 | -1.69E-46 |
| MS.gene058037 | MS.gene073882 | 0.812975 | 3.23E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene073882 | 0.826823 | 2.20E-54 | -1.69E-46 |
| MS.gene058829 | MS.gene073882 | 0.827201 | 1.78E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene073882 | 0.805657 | 1.20E-49 | -1.69E-46 |
| MS.gene059272 | MS.gene073882 | 0.813591 | 2.37E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene073882 | 0.812175 | 4.84E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene073882 | 0.831062 | 2.07E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073882.t1 | MTR_3g462290 | 90.323 | 62 | 6 | 0 | 169 | 230 | 1184 | 1245 | 1.44e-29 | 116 |
| MS.gene073882.t1 | MTR_2g098850 | 86.111 | 36 | 5 | 0 | 60 | 95 | 261 | 296 | 1.20e-12 | 67.0 |
| MS.gene073882.t1 | MTR_2g098850 | 86.111 | 36 | 5 | 0 | 60 | 95 | 261 | 296 | 1.22e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073882.t1 | AT3G46960 | 69.355 | 62 | 19 | 0 | 169 | 230 | 1060 | 1121 | 1.63e-21 | 93.2 |
| MS.gene073882.t1 | AT3G46960 | 69.355 | 62 | 19 | 0 | 169 | 230 | 1069 | 1130 | 1.65e-21 | 93.2 |
| MS.gene073882.t1 | AT3G46960 | 69.355 | 62 | 19 | 0 | 169 | 230 | 1197 | 1258 | 2.08e-21 | 92.8 |
Find 54 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTGCTGCCTTTGCCAATT+TGG | 0.160763 | 1.3:-26564813 | None:intergenic |
| CTTCACTCTTCAGGGCTTAT+TGG | 0.227219 | 1.3:-26568447 | None:intergenic |
| GGGCATACTCTTCACTCTTC+AGG | 0.230925 | 1.3:-26568456 | None:intergenic |
| CTTGTATAATATAGCCAAAT+TGG | 0.273376 | 1.3:+26564799 | MS.gene073882:CDS |
| TATTTCTTAGTTAGTACATT+TGG | 0.288529 | 1.3:+26566308 | MS.gene073882:intron |
| TTCACTCTTCAGGGCTTATT+GGG | 0.325955 | 1.3:-26568446 | None:intergenic |
| CGGCTAAGAATCCTGATTAT+TGG | 0.344218 | 1.3:+26564765 | MS.gene073882:CDS |
| CAAACCTTTGACCAATAATC+AGG | 0.346860 | 1.3:-26564776 | None:intergenic |
| GGCATACTCTTCACTCTTCA+GGG | 0.347658 | 1.3:-26568455 | None:intergenic |
| ATTAACACTGTTGCTTCTTC+TGG | 0.358110 | 1.3:-26568122 | None:intergenic |
| TGTGCGGCGTGTCTTGTATA+AGG | 0.361937 | 1.3:+26564838 | MS.gene073882:CDS |
| ATTTCTTAGTTAGTACATTT+GGG | 0.370811 | 1.3:+26566309 | MS.gene073882:intron |
| CCAACTATAAAATGAGTATA+TGG | 0.377022 | 1.3:+26562806 | MS.gene073882:CDS |
| GTCTACTCTTGGCTATTATA+CGG | 0.381220 | 1.3:+26565440 | MS.gene073882:CDS |
| TTACAGACTCTTGCTTATAG+TGG | 0.383704 | 1.3:-26562926 | None:intergenic |
| TCAAACTTGGACTCCTGCGC+TGG | 0.389506 | 1.3:-26562885 | None:intergenic |
| GTGAGATTGCACTTCAAACT+TGG | 0.398526 | 1.3:-26562898 | None:intergenic |
| GCAAAATGCTCCTCGCTAGA+AGG | 0.410498 | 1.3:-26562772 | None:intergenic |
| TGAGAACCAGCTCGATGAAC+TGG | 0.411981 | 1.3:+26568097 | MS.gene073882:intron |
| CAAGAGTAGACCTTTCATAT+CGG | 0.426166 | 1.3:-26565428 | None:intergenic |
| TTTAAGGTAGTGGAGGCTAA+TGG | 0.427624 | 1.3:+26564928 | MS.gene073882:intron |
| GAATCTGTGGTAGTGTGATC+TGG | 0.440916 | 1.3:-26562843 | None:intergenic |
| CTAAACTTACAGGAAGAAAC+AGG | 0.444412 | 1.3:+26565119 | MS.gene073882:intron |
| AAGAGTAGACCTTTCATATC+GGG | 0.454628 | 1.3:-26565427 | None:intergenic |
| TGCTACTGAGATGCGAAAGA+AGG | 0.460175 | 1.3:+26565144 | MS.gene073882:CDS |
| GCTCGGATGCATTCTTCTGC+TGG | 0.462768 | 1.3:-26568160 | None:intergenic |
| CAAACTTGGACTCCTGCGCT+GGG | 0.497823 | 1.3:-26562884 | None:intergenic |
| GAATCCTGATTATTGGTCAA+AGG | 0.516135 | 1.3:+26564772 | MS.gene073882:CDS |
| TGGACAACCACGACACTTGA+CGG | 0.534623 | 1.3:-26566337 | None:intergenic |
| TCATCACTTTCACAGGGATA+CGG | 0.536957 | 1.3:+26564745 | MS.gene073882:intron |
| CGATATGAAAGGTCTACTCT+TGG | 0.540817 | 1.3:+26565429 | MS.gene073882:CDS |
| GAGATGCGAAAGAAGGGAGT+TGG | 0.540849 | 1.3:+26565151 | MS.gene073882:CDS |
| GCTACTGAGATGCGAAAGAA+GGG | 0.574228 | 1.3:+26565145 | MS.gene073882:CDS |
| TACACACCACTCTAAAGGGA+AGG | 0.581971 | 1.3:+26565197 | MS.gene073882:CDS |
| GGATTCGCCGTCAAGTGTCG+TGG | 0.582573 | 1.3:+26566330 | MS.gene073882:CDS |
| CTGTCTTACAGCACATCTCA+AGG | 0.588076 | 1.3:+26566371 | MS.gene073882:CDS |
| GGATTTGTTTAAGGTAGTGG+AGG | 0.598926 | 1.3:+26564921 | MS.gene073882:intron |
| TCATCTACGATCCCCAGCGC+AGG | 0.599763 | 1.3:+26562872 | MS.gene073882:CDS |
| TAATATAGCCAAATTGGCAA+AGG | 0.601822 | 1.3:+26564805 | MS.gene073882:CDS |
| TGGGGATCGTAGATGAGTGT+GGG | 0.608534 | 1.3:-26562865 | None:intergenic |
| AAAATACCTTCCCTTTAGAG+TGG | 0.611628 | 1.3:-26565203 | None:intergenic |
| CCTAGGTGTGAGTGATGGCT+CGG | 0.612561 | 1.3:-26568177 | None:intergenic |
| GACAGCCTAGGTGTGAGTGA+TGG | 0.618203 | 1.3:-26568182 | None:intergenic |
| ACAACAGACCCCGATATGAA+AGG | 0.626855 | 1.3:+26565418 | MS.gene073882:intron |
| CCGAGCCATCACTCACACCT+AGG | 0.627548 | 1.3:+26568177 | MS.gene073882:CDS |
| CTTCACAAAGCCTTCTAGCG+AGG | 0.630194 | 1.3:+26562762 | MS.gene073882:CDS |
| CTCGCTAGAAGGCTTTGTGA+AGG | 0.630596 | 1.3:-26562761 | None:intergenic |
| CTGGGGATCGTAGATGAGTG+TGG | 0.633587 | 1.3:-26562866 | None:intergenic |
| CACAAAATAGCTATACGACT+AGG | 0.641406 | 1.3:+26568399 | MS.gene073882:CDS |
| CAAAGGCAGCAACGACTGTG+CGG | 0.655883 | 1.3:+26564822 | MS.gene073882:CDS |
| GTAAGACAGTTGAAGAAGTG+TGG | 0.662636 | 1.3:-26566357 | None:intergenic |
| AAACTTGGACTCCTGCGCTG+GGG | 0.663223 | 1.3:-26562883 | None:intergenic |
| TAGATGAGTGTGGGAATCTG+TGG | 0.665130 | 1.3:-26562856 | None:intergenic |
| AGAGTAGACCTTTCATATCG+GGG | 0.669595 | 1.3:-26565426 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGACAAAAAAAAAAAATT+AGG | - | chr1.3:26565902-26565921 | None:intergenic | 10.0% |
| !!! | ATATAATGAGAAATTTTAAT+TGG | + | chr1.3:26565365-26565384 | MS.gene073882:intron | 10.0% |
| !!! | TTGTTATTTCATAATATATT+TGG | + | chr1.3:26564974-26564993 | MS.gene073882:intron | 10.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr1.3:26564494-26564513 | None:intergenic | 15.0% |
| !! | AAGTTAAAAGAAAATGAAAA+TGG | - | chr1.3:26567791-26567810 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr1.3:26564493-26564512 | MS.gene073882:intron | 15.0% |
| !! | ACGTTATAAAAAAAATTAAG+AGG | - | chr1.3:26568289-26568308 | None:intergenic | 15.0% |
| !! | ATCAAAAGATATAAGATTTA+AGG | - | chr1.3:26565099-26565118 | None:intergenic | 15.0% |
| !! | ATTAGTTGGATTATATATAA+AGG | + | chr1.3:26563906-26563925 | MS.gene073882:intron | 15.0% |
| !! | CGTTATAAAAAAAATTAAGA+GGG | - | chr1.3:26568288-26568307 | None:intergenic | 15.0% |
| !! | GAAAATATATGAATATTTCA+TGG | + | chr1.3:26562961-26562980 | MS.gene073882:intron | 15.0% |
| !! | GTTATAAAAAAAATTAAGAG+GGG | - | chr1.3:26568287-26568306 | None:intergenic | 15.0% |
| !! | TCAAACATGATTAAAAAATT+TGG | - | chr1.3:26564882-26564901 | None:intergenic | 15.0% |
| !!! | AATACTTGTATTTGAATTTT+CGG | + | chr1.3:26566452-26566471 | MS.gene073882:intron | 15.0% |
| !!! | ACTATTTTTCAACTAAAAAT+TGG | - | chr1.3:26566006-26566025 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTGTTTGGAAT+TGG | + | chr1.3:26567238-26567257 | MS.gene073882:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | - | chr1.3:26564367-26564386 | None:intergenic | 15.0% |
| !!! | GATTAAACTATTTTAAGTAA+AGG | + | chr1.3:26567478-26567497 | MS.gene073882:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr1.3:26564470-26564489 | None:intergenic | 15.0% |
| !!! | TATAATTTTTGTTTGGAATT+GGG | + | chr1.3:26567239-26567258 | MS.gene073882:intron | 15.0% |
| !!! | TGATTAGGTTTTTTTTTTTT+TGG | + | chr1.3:26566900-26566919 | MS.gene073882:intron | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr1.3:26564484-26564503 | MS.gene073882:intron | 20.0% |
| !! | AAGTAAACAATTCAATAAGA+AGG | - | chr1.3:26567592-26567611 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr1.3:26564407-26564426 | None:intergenic | 20.0% |
| !! | AGCTTAAACTTTGTAAAAAT+AGG | + | chr1.3:26566099-26566118 | MS.gene073882:intron | 20.0% |
| !! | ATGAACAATAAGATTAACTT+TGG | - | chr1.3:26566481-26566500 | None:intergenic | 20.0% |
| !! | ATTTCTTAGTTAGTACATTT+GGG | + | chr1.3:26566309-26566328 | MS.gene073882:intron | 20.0% |
| !! | CAAAAAAATGTTAATCATAC+AGG | - | chr1.3:26566927-26566946 | None:intergenic | 20.0% |
| !! | TAAGCTATGATTAGATATAA+GGG | + | chr1.3:26564687-26564706 | MS.gene073882:intron | 20.0% |
| !! | TAATGGTGTAGTAATATATT+TGG | + | chr1.3:26564945-26564964 | MS.gene073882:intron | 20.0% |
| !! | TATTTCTTAGTTAGTACATT+TGG | + | chr1.3:26566308-26566327 | MS.gene073882:intron | 20.0% |
| !! | TTATATCTTCATGTCTTAAA+TGG | - | chr1.3:26565351-26565370 | None:intergenic | 20.0% |
| !! | TTGGATTATATATAAAGGAT+AGG | + | chr1.3:26563911-26563930 | MS.gene073882:intron | 20.0% |
| !!! | AATGAATAAGGGTATAATAA+TGG | + | chr1.3:26564126-26564145 | MS.gene073882:intron | 20.0% |
| !!! | ATATTTGTTTCTTCTGAAAA+AGG | + | chr1.3:26567065-26567084 | MS.gene073882:intron | 20.0% |
| !!! | CTATATTCATTTTATGTGTT+TGG | + | chr1.3:26568039-26568058 | MS.gene073882:intron | 20.0% |
| !!! | CTGAACATATAATTTTTGTT+TGG | + | chr1.3:26567232-26567251 | MS.gene073882:intron | 20.0% |
| !!! | GAATTTTCTTAATATTACCA+AGG | - | chr1.3:26565785-26565804 | None:intergenic | 20.0% |
| !!! | GTATTTTAATCAATATTGCA+TGG | + | chr1.3:26564246-26564265 | MS.gene073882:intron | 20.0% |
| !!! | GTTAATCAATTTTTTTCTCA+AGG | + | chr1.3:26566615-26566634 | MS.gene073882:intron | 20.0% |
| !!! | TCTTATAATTGGTTTTCTTA+TGG | + | chr1.3:26565303-26565322 | MS.gene073882:intron | 20.0% |
| !!! | TTTTTTGTCAAATGTCAATT+AGG | + | chr1.3:26565910-26565929 | MS.gene073882:intron | 20.0% |
| !!! | TTTTTTGTCAATAACAGTTT+AGG | - | chr1.3:26565722-26565741 | None:intergenic | 20.0% |
| ! | AAAAGTAATAAATGCTGCAT+TGG | + | chr1.3:26564152-26564171 | MS.gene073882:intron | 25.0% |
| ! | AAACGACAATAATTTAGAGA+CGG | - | chr1.3:26563982-26564001 | None:intergenic | 25.0% |
| ! | AAATTAGAGAGAAGAATCAA+AGG | - | chr1.3:26566831-26566850 | None:intergenic | 25.0% |
| ! | AACTAATTGCAATTAATTCC+TGG | - | chr1.3:26563893-26563912 | None:intergenic | 25.0% |
| ! | AATGATTAAGAGAAAGAGAA+TGG | - | chr1.3:26564527-26564546 | None:intergenic | 25.0% |
| ! | AATTTATATTGTTTCACAGG+AGG | - | chr1.3:26565523-26565542 | None:intergenic | 25.0% |
| ! | AGATTCAAACCATATTCTTA+AGG | - | chr1.3:26565599-26565618 | None:intergenic | 25.0% |
| ! | AGGAATTAATTGCAATTAGT+TGG | + | chr1.3:26563892-26563911 | MS.gene073882:intron | 25.0% |
| ! | AGTAATTAACACTATTAGGA+GGG | + | chr1.3:26564603-26564622 | MS.gene073882:intron | 25.0% |
| ! | ATAAAAACTAAGTTACAGCA+TGG | + | chr1.3:26563613-26563632 | MS.gene073882:intron | 25.0% |
| ! | ATGAATTGCAAGTTAAATAC+AGG | - | chr1.3:26563283-26563302 | None:intergenic | 25.0% |
| ! | ATTTATATTGTTTCACAGGA+GGG | - | chr1.3:26565522-26565541 | None:intergenic | 25.0% |
| ! | CAATCCTAACATATTTGTAT+AGG | + | chr1.3:26567833-26567852 | MS.gene073882:intron | 25.0% |
| ! | CCAACTATAAAATGAGTATA+TGG | + | chr1.3:26562806-26562825 | MS.gene073882:CDS | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | - | chr1.3:26564083-26564102 | None:intergenic | 25.0% |
| ! | CTCAATTTATATTGTTTCAC+AGG | - | chr1.3:26565526-26565545 | None:intergenic | 25.0% |
| ! | CTTGTATAATATAGCCAAAT+TGG | + | chr1.3:26564799-26564818 | MS.gene073882:CDS | 25.0% |
| ! | GAATTCCTCATATATATGTT+TGG | + | chr1.3:26565021-26565040 | MS.gene073882:intron | 25.0% |
| ! | GAGAAAAAAATTGATTAACG+CGG | - | chr1.3:26566614-26566633 | None:intergenic | 25.0% |
| ! | GATTAATTGAATTAAGAGCT+TGG | + | chr1.3:26565475-26565494 | MS.gene073882:intron | 25.0% |
| ! | GATTCAAACCATATTCTTAA+GGG | - | chr1.3:26565598-26565617 | None:intergenic | 25.0% |
| ! | GGATGAAATTCAATGAATAA+GGG | + | chr1.3:26564115-26564134 | MS.gene073882:intron | 25.0% |
| ! | GTAAGCTATGATTAGATATA+AGG | + | chr1.3:26564686-26564705 | MS.gene073882:intron | 25.0% |
| ! | TAAAAACTAAGTTACAGCAT+GGG | + | chr1.3:26563614-26563633 | MS.gene073882:intron | 25.0% |
| ! | TAATCAATTGGTTAAAGGAA+GGG | + | chr1.3:26566552-26566571 | MS.gene073882:intron | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr1.3:26564084-26564103 | None:intergenic | 25.0% |
| ! | TCTGTTAATCAATTGGTTAA+AGG | + | chr1.3:26566547-26566566 | MS.gene073882:intron | 25.0% |
| ! | TGGATGAAATTCAATGAATA+AGG | + | chr1.3:26564114-26564133 | MS.gene073882:intron | 25.0% |
| ! | TTAATCAATTGGTTAAAGGA+AGG | + | chr1.3:26566551-26566570 | MS.gene073882:intron | 25.0% |
| ! | TTAGAAATTGAATAGAGTCA+TGG | - | chr1.3:26563491-26563510 | None:intergenic | 25.0% |
| ! | TTTCAATGAAACACTTCATT+AGG | + | chr1.3:26563168-26563187 | MS.gene073882:intron | 25.0% |
| !! | ATATTGCCAAACTATTTTGT+AGG | + | chr1.3:26566795-26566814 | MS.gene073882:intron | 25.0% |
| !! | ATCTTTTGATCTAAACTTAC+AGG | + | chr1.3:26565109-26565128 | MS.gene073882:intron | 25.0% |
| !! | ATGCATAAAATTTGTTTCCA+GGG | + | chr1.3:26566064-26566083 | MS.gene073882:intron | 25.0% |
| !! | CCATATACTCATTTTATAGT+TGG | - | chr1.3:26562809-26562828 | None:intergenic | 25.0% |
| !! | CTCTAAATTATTGTCGTTTA+AGG | + | chr1.3:26563983-26564002 | MS.gene073882:intron | 25.0% |
| !! | TATACTCATTTTATAGTTGG+TGG | - | chr1.3:26562806-26562825 | None:intergenic | 25.0% |
| !! | TATGCATAAAATTTGTTTCC+AGG | + | chr1.3:26566063-26566082 | MS.gene073882:intron | 25.0% |
| !! | TCTTAAATGGTTAACCATTT+TGG | - | chr1.3:26565338-26565357 | None:intergenic | 25.0% |
| !! | TTTTAATCATGTTTGATTCC+TGG | + | chr1.3:26564886-26564905 | MS.gene073882:intron | 25.0% |
| !!! | ATTGATTGTGTTGATTTCAA+TGG | + | chr1.3:26564031-26564050 | MS.gene073882:intron | 25.0% |
| !!! | ATTGTGTTTTTGTTTTAGTC+TGG | + | chr1.3:26567345-26567364 | MS.gene073882:intron | 25.0% |
| !!! | CTGTTGTTCTGTTTTATTTT+TGG | - | chr1.3:26563400-26563419 | None:intergenic | 25.0% |
| !!! | TTGTAGATGTTGTTTTTACT+TGG | + | chr1.3:26567391-26567410 | MS.gene073882:intron | 25.0% |
| AAACAAGAATTCAAGTATCC+TGG | - | chr1.3:26567669-26567688 | None:intergenic | 30.0% | |
| AAAGTTTCAGCTCAGAAAAT+AGG | - | chr1.3:26565665-26565684 | None:intergenic | 30.0% | |
| AACATATTTGTATAGGCACT+AGG | + | chr1.3:26567840-26567859 | MS.gene073882:intron | 30.0% | |
| AAGAGACTATTATTGTGAGA+CGG | + | chr1.3:26564218-26564237 | MS.gene073882:intron | 30.0% | |
| AATCAATTGGTTAAAGGAAG+GGG | + | chr1.3:26566553-26566572 | MS.gene073882:intron | 30.0% | |
| ACATGAGATAGTATAGACAT+TGG | - | chr1.3:26566144-26566163 | None:intergenic | 30.0% | |
| ACTGATGTGTAGAAAGAAAA+AGG | + | chr1.3:26567295-26567314 | MS.gene073882:intron | 30.0% | |
| ACTTGTCTCTGTTAATCAAT+TGG | + | chr1.3:26566540-26566559 | MS.gene073882:intron | 30.0% | |
| AGCATTCCTACAAAATAGTT+TGG | - | chr1.3:26566804-26566823 | None:intergenic | 30.0% | |
| AGGGAGTAATTAACACTATT+AGG | + | chr1.3:26564599-26564618 | MS.gene073882:intron | 30.0% | |
| AGTGCCTATACAAATATGTT+AGG | - | chr1.3:26567840-26567859 | None:intergenic | 30.0% | |
| ATATATCCATGTGTATGTGA+TGG | + | chr1.3:26566511-26566530 | MS.gene073882:intron | 30.0% | |
| ATATTATAGACAGAATGCCT+TGG | + | chr1.3:26563561-26563580 | MS.gene073882:intron | 30.0% | |
| ATCATCGTTCAATTGGTTAA+AGG | + | chr1.3:26567728-26567747 | MS.gene073882:intron | 30.0% | |
| ATTAAAACCAAGAGTAACAC+TGG | - | chr1.3:26566413-26566432 | None:intergenic | 30.0% | |
| ATTAAGGATTGATGTATGGT+AGG | - | chr1.3:26563044-26563063 | None:intergenic | 30.0% | |
| CAAGATGAAAATGACAGTAA+TGG | + | chr1.3:26567515-26567534 | MS.gene073882:intron | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | + | chr1.3:26564080-26564099 | MS.gene073882:intron | 30.0% | |
| CTGATGTGTAGAAAGAAAAA+GGG | + | chr1.3:26567296-26567315 | MS.gene073882:intron | 30.0% | |
| GAGTAATTAACACTATTAGG+AGG | + | chr1.3:26564602-26564621 | MS.gene073882:intron | 30.0% | |
| GAGTCTGTAAGATGAAAATA+AGG | + | chr1.3:26562939-26562958 | MS.gene073882:intron | 30.0% | |
| TAACCCTAATTCTAAATACC+TGG | - | chr1.3:26564662-26564681 | None:intergenic | 30.0% | |
| TAATATAGCCAAATTGGCAA+AGG | + | chr1.3:26564805-26564824 | MS.gene073882:CDS | 30.0% | |
| TACCTCCAAACATATATATG+AGG | - | chr1.3:26565029-26565048 | None:intergenic | 30.0% | |
| TATATGTTCAGAATCACAGT+TGG | - | chr1.3:26567223-26567242 | None:intergenic | 30.0% | |
| TATGGCATTATATGCCAAAA+TGG | + | chr1.3:26565321-26565340 | MS.gene073882:intron | 30.0% | |
| TCAAATGTCAATTAGGCTTA+AGG | + | chr1.3:26565917-26565936 | MS.gene073882:intron | 30.0% | |
| TGAGATTAAGGATTGATGTA+TGG | - | chr1.3:26563048-26563067 | None:intergenic | 30.0% | |
| TGGAATGTTCATAACTCATA+AGG | - | chr1.3:26565810-26565829 | None:intergenic | 30.0% | |
| TGGCAGTTTAATTCATATCA+AGG | + | chr1.3:26565868-26565887 | MS.gene073882:intron | 30.0% | |
| TGGTTTATCCCTTAAGAATA+TGG | + | chr1.3:26565587-26565606 | MS.gene073882:intron | 30.0% | |
| TGTGTTCGGTTAAAAGTAAT+AGG | + | chr1.3:26567866-26567885 | MS.gene073882:intron | 30.0% | |
| TTCAATTGGTTAAAGGAAGA+GGG | + | chr1.3:26567735-26567754 | MS.gene073882:intron | 30.0% | |
| TTCAATTTACTTATGCGAAG+AGG | - | chr1.3:26563082-26563101 | None:intergenic | 30.0% | |
| TTCATCGTGTAAAATTTGTG+TGG | + | chr1.3:26567624-26567643 | MS.gene073882:intron | 30.0% | |
| TTCCTCATATATATGTTTGG+AGG | + | chr1.3:26565024-26565043 | MS.gene073882:intron | 30.0% | |
| TTCTGATTGGAATCAACATA+TGG | + | chr1.3:26568347-26568366 | MS.gene073882:intron | 30.0% | |
| TTTATACAACTTTGTGTGTG+TGG | + | chr1.3:26566686-26566705 | MS.gene073882:intron | 30.0% | |
| ! | AAAAGGATCGGATTTGTTTA+AGG | + | chr1.3:26564912-26564931 | MS.gene073882:intron | 30.0% |
| ! | GTCTAAATTTTGTAACACAC+TGG | + | chr1.3:26565567-26565586 | MS.gene073882:intron | 30.0% |
| ! | TCTCATGTTTGTGAACTTTT+AGG | + | chr1.3:26566156-26566175 | MS.gene073882:intron | 30.0% |
| ! | TGGTTGTTGTTCTTATTGAA+AGG | + | chr1.3:26567365-26567384 | MS.gene073882:intron | 30.0% |
| ! | TTAGGATTGTGTAAAAGTGT+TGG | - | chr1.3:26567822-26567841 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr1.3:26564576-26564595 | MS.gene073882:intron | 30.0% |
| !! | AATCAACCGGAATTTTGAAA+CGG | - | chr1.3:26565849-26565868 | None:intergenic | 30.0% |
| !! | GAATTTGTTAACAGTCTAGA+TGG | + | chr1.3:26566576-26566595 | MS.gene073882:intron | 30.0% |
| !! | GATAAGAAGTGTTCTAATTC+CGG | + | chr1.3:26567431-26567450 | MS.gene073882:intron | 30.0% |
| !! | TAGGATTGTGTAAAAGTGTT+GGG | - | chr1.3:26567821-26567840 | None:intergenic | 30.0% |
| !! | TTGGTTTTCAGCAATCAAAA+GGG | + | chr1.3:26565170-26565189 | MS.gene073882:CDS | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr1.3:26564575-26564594 | None:intergenic | 30.0% |
| AAGAGTAGACCTTTCATATC+GGG | - | chr1.3:26565430-26565449 | None:intergenic | 35.0% | |
| AATCAGAATTTCAGAGAAGC+AGG | - | chr1.3:26568335-26568354 | None:intergenic | 35.0% | |
| ACAAGAATAAGATCGCGTTT+AGG | - | chr1.3:26566951-26566970 | None:intergenic | 35.0% | |
| AGTAACACTGGTAAAGAGAA+GGG | - | chr1.3:26566401-26566420 | None:intergenic | 35.0% | |
| AGTTAGTGGAGTAGTTAAGT+TGG | + | chr1.3:26564094-26564113 | MS.gene073882:intron | 35.0% | |
| ATAAGGGATGAATCCAACAT+CGG | + | chr1.3:26564703-26564722 | MS.gene073882:intron | 35.0% | |
| ATCAAGCATTTCGCATTTCT+TGG | - | chr1.3:26565257-26565276 | None:intergenic | 35.0% | |
| ATCAATTGGTTAAAGGAAGG+GGG | + | chr1.3:26566554-26566573 | MS.gene073882:intron | 35.0% | |
| ATTCATCAAGTCATGAGCAA+AGG | + | chr1.3:26563103-26563122 | MS.gene073882:intron | 35.0% | |
| CAAACCAAAATTCTTGGTCT+TGG | - | chr1.3:26563698-26563717 | None:intergenic | 35.0% | |
| CAAACCTTTGACCAATAATC+AGG | - | chr1.3:26564779-26564798 | None:intergenic | 35.0% | |
| CAAGAGTAGACCTTTCATAT+CGG | - | chr1.3:26565431-26565450 | None:intergenic | 35.0% | |
| CACAAAATAGCTATACGACT+AGG | + | chr1.3:26568399-26568418 | MS.gene073882:CDS | 35.0% | |
| CATGGTACGATAACAAAGTA+TGG | + | chr1.3:26563452-26563471 | MS.gene073882:intron | 35.0% | |
| CTAAACTTACAGGAAGAAAC+AGG | + | chr1.3:26565119-26565138 | MS.gene073882:intron | 35.0% | |
| CTCGTTGTGGTTCTTATAAT+TGG | + | chr1.3:26565292-26565311 | MS.gene073882:intron | 35.0% | |
| CTGTCTATAATATACCCTCA+TGG | - | chr1.3:26563554-26563573 | None:intergenic | 35.0% | |
| CTTCTACCGTTTCAAAATTC+CGG | + | chr1.3:26565840-26565859 | MS.gene073882:intron | 35.0% | |
| CTTTAACCTTTCAGCTTACT+AGG | - | chr1.3:26564295-26564314 | None:intergenic | 35.0% | |
| CTTTGACATCATCGTTCAAT+TGG | + | chr1.3:26567721-26567740 | MS.gene073882:intron | 35.0% | |
| GAATCCTGATTATTGGTCAA+AGG | + | chr1.3:26564772-26564791 | MS.gene073882:CDS | 35.0% | |
| GAATTAAACTGCCAATCAAC+CGG | - | chr1.3:26565862-26565881 | None:intergenic | 35.0% | |
| GACAATAATTTAGAGACGGA+GGG | - | chr1.3:26563978-26563997 | None:intergenic | 35.0% | |
| GTACTGTAATAGATAGACCT+TGG | + | chr1.3:26565765-26565784 | MS.gene073882:intron | 35.0% | |
| GTCTACTCTTGGCTATTATA+CGG | + | chr1.3:26565440-26565459 | MS.gene073882:CDS | 35.0% | |
| GTTCAATTGGTTAAAGGAAG+AGG | + | chr1.3:26567734-26567753 | MS.gene073882:intron | 35.0% | |
| GTTTCAAAATTCCGGTTGAT+TGG | + | chr1.3:26565848-26565867 | MS.gene073882:intron | 35.0% | |
| TAAGTTACAGCATGGGAATA+TGG | + | chr1.3:26563621-26563640 | MS.gene073882:intron | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | + | chr1.3:26563818-26563837 | MS.gene073882:intron | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | - | chr1.3:26563837-26563818 | None:intergenic | 35.0% | |
| TGTTTGATTCCTGGACTAAA+AGG | + | chr1.3:26564895-26564914 | MS.gene073882:intron | 35.0% | |
| TTACAGACTCTTGCTTATAG+TGG | - | chr1.3:26562929-26562948 | None:intergenic | 35.0% | |
| TTCATCAAGTCATGAGCAAA+GGG | + | chr1.3:26563104-26563123 | MS.gene073882:intron | 35.0% | |
| TTGACGTAAATGTATACGCA+AGG | + | chr1.3:26562987-26563006 | MS.gene073882:intron | 35.0% | |
| TTGGAATAGACGATGTATGA+AGG | - | chr1.3:26565238-26565257 | None:intergenic | 35.0% | |
| ! | AAAATACCTTCCCTTTAGAG+TGG | - | chr1.3:26565206-26565225 | None:intergenic | 35.0% |
| ! | ATAGACATTGGTTAGACACA+TGG | - | chr1.3:26566132-26566151 | None:intergenic | 35.0% |
| ! | ATCGGATTTGTTTAAGGTAG+TGG | + | chr1.3:26564918-26564937 | MS.gene073882:intron | 35.0% |
| ! | ATTAACACTGTTGCTTCTTC+TGG | - | chr1.3:26568125-26568144 | None:intergenic | 35.0% |
| ! | CTTTTACACACCACTCTAAA+GGG | + | chr1.3:26565193-26565212 | MS.gene073882:CDS | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr1.3:26564445-26564464 | None:intergenic | 35.0% |
| ! | GTTTTTGTATGTTCTCGTTG+TGG | + | chr1.3:26565279-26565298 | MS.gene073882:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr1.3:26564441-26564460 | None:intergenic | 35.0% |
| ! | TTCATGGGAGGAACAATTTT+TGG | - | chr1.3:26567151-26567170 | None:intergenic | 35.0% |
| ! | TTTGTTATCGTACCATGCAT+TGG | - | chr1.3:26563449-26563468 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr1.3:26564341-26564360 | None:intergenic | 35.0% |
| !! | TGCTTCTCTGAAATTCTGAT+TGG | + | chr1.3:26568334-26568353 | MS.gene073882:intron | 35.0% |
| !! | TTGAGTGTTGAGAACAATAG+AGG | + | chr1.3:26565541-26565560 | MS.gene073882:intron | 35.0% |
| !! | TTTGTTTCCAGGGTATTGAT+AGG | + | chr1.3:26566074-26566093 | MS.gene073882:intron | 35.0% |
| !!! | ACTCATTTTATAGTTGGTGG+TGG | - | chr1.3:26562803-26562822 | None:intergenic | 35.0% |
| !!! | CAAGACCAAGAATTTTGGTT+TGG | + | chr1.3:26563696-26563715 | MS.gene073882:intron | 35.0% |
| !!! | CAGTTGCTTTTGCAAAATCA+CGG | + | chr1.3:26567178-26567197 | MS.gene073882:intron | 35.0% |
| !!! | CATAGTCTAATGCCACTTTT+CGG | + | chr1.3:26567939-26567958 | MS.gene073882:intron | 35.0% |
| !!! | GTTGGTTTTCAGCAATCAAA+AGG | + | chr1.3:26565169-26565188 | MS.gene073882:CDS | 35.0% |
| AAGAGAGAAGAGAGAGAAGA+GGG | + | chr1.3:26563735-26563754 | MS.gene073882:intron | 40.0% | |
| AAGGAGGAGAAAATCTTGTG+TGG | + | chr1.3:26563671-26563690 | MS.gene073882:intron | 40.0% | |
| AAGTGATGAACACAGACTGT+TGG | - | chr1.3:26564734-26564753 | None:intergenic | 40.0% | |
| ACAGCATGATTCACATTTGC+AGG | + | chr1.3:26563134-26563153 | MS.gene073882:intron | 40.0% | |
| ACGCGTCAAGTTCTATGATT+AGG | + | chr1.3:26566885-26566904 | MS.gene073882:intron | 40.0% | |
| AGACTATTATTGTGAGACGG+AGG | + | chr1.3:26564221-26564240 | MS.gene073882:intron | 40.0% | |
| AGAGTAGACCTTTCATATCG+GGG | - | chr1.3:26565429-26565448 | None:intergenic | 40.0% | |
| AGTGATGAACACAGACTGTT+GGG | - | chr1.3:26564733-26564752 | None:intergenic | 40.0% | |
| ATGAAAGAAACCTTGCACGA+TGG | + | chr1.3:26563522-26563541 | MS.gene073882:intron | 40.0% | |
| CAAACCAAAATTCTTGGTCC+AGG | + | chr1.3:26563824-26563843 | MS.gene073882:intron | 40.0% | |
| CATTCTCAACGTTCAACTCA+AGG | + | chr1.3:26563249-26563268 | MS.gene073882:intron | 40.0% | |
| CCCTAATTCTAAATACCTGG+CGG | - | chr1.3:26564659-26564678 | None:intergenic | 40.0% | |
| CCTACAAGAACAACATCAAC+CGG | - | chr1.3:26567453-26567472 | None:intergenic | 40.0% | |
| CGACAATAATTTAGAGACGG+AGG | - | chr1.3:26563979-26563998 | None:intergenic | 40.0% | |
| CGATATGAAAGGTCTACTCT+TGG | + | chr1.3:26565429-26565448 | MS.gene073882:CDS | 40.0% | |
| CGGCTAAGAATCCTGATTAT+TGG | + | chr1.3:26564765-26564784 | MS.gene073882:CDS | 40.0% | |
| CTGTGTTCATCACTTTCACA+GGG | + | chr1.3:26564739-26564758 | MS.gene073882:intron | 40.0% | |
| GAAAAAGGGATGAGCTTGAT+TGG | + | chr1.3:26567310-26567329 | MS.gene073882:intron | 40.0% | |
| GACTATTATTGTGAGACGGA+GGG | + | chr1.3:26564222-26564241 | MS.gene073882:intron | 40.0% | |
| GAGTAACACTGGTAAAGAGA+AGG | - | chr1.3:26566402-26566421 | None:intergenic | 40.0% | |
| GATTCCTGGACTAAAAGGAT+CGG | + | chr1.3:26564900-26564919 | MS.gene073882:intron | 40.0% | |
| GATTGCAAAAGCTATGAAGC+TGG | + | chr1.3:26567096-26567115 | MS.gene073882:intron | 40.0% | |
| GCAAAATACCAACCGAAAAG+TGG | - | chr1.3:26567954-26567973 | None:intergenic | 40.0% | |
| GCTATCTGCTGATGAGATTA+AGG | - | chr1.3:26563060-26563079 | None:intergenic | 40.0% | |
| GCTATTATACGGTGTGTTTG+TGG | + | chr1.3:26565451-26565470 | MS.gene073882:intron | 40.0% | |
| GGCTGTCTGATGCAAAAAAT+AGG | + | chr1.3:26568198-26568217 | MS.gene073882:CDS | 40.0% | |
| GTAAGACAGTTGAAGAAGTG+TGG | - | chr1.3:26566360-26566379 | None:intergenic | 40.0% | |
| GTGAGATTGCACTTCAAACT+TGG | - | chr1.3:26562901-26562920 | None:intergenic | 40.0% | |
| TAACAAAGTATGGACGTCGT+CGG | + | chr1.3:26563462-26563481 | MS.gene073882:intron | 40.0% | |
| TACAGCATGGGAATATGGAA+AGG | + | chr1.3:26563626-26563645 | MS.gene073882:intron | 40.0% | |
| TATGAGACGTTACCAATGCA+TGG | + | chr1.3:26563434-26563453 | MS.gene073882:intron | 40.0% | |
| TCATCACTTTCACAGGGATA+CGG | + | chr1.3:26564745-26564764 | MS.gene073882:intron | 40.0% | |
| TCTGTGTTCATCACTTTCAC+AGG | + | chr1.3:26564738-26564757 | MS.gene073882:intron | 40.0% | |
| TGAAGACCATCACATACACA+TGG | - | chr1.3:26566520-26566539 | None:intergenic | 40.0% | |
| TTTCCAGAGAAACACTTGTG+TGG | - | chr1.3:26563851-26563870 | None:intergenic | 40.0% | |
| ! | AAATCCGATCCTTTTAGTCC+AGG | - | chr1.3:26564907-26564926 | None:intergenic | 40.0% |
| ! | ACACAAGTGTTTCTCTGGAA+AGG | + | chr1.3:26563850-26563869 | MS.gene073882:intron | 40.0% |
| ! | ATTTTCAAAAGATTGCCGCC+AGG | + | chr1.3:26564641-26564660 | MS.gene073882:intron | 40.0% |
| ! | CCGCCAGGTATTTAGAATTA+GGG | + | chr1.3:26564656-26564675 | MS.gene073882:intron | 40.0% |
| ! | CTCTTTACCAGTGTTACTCT+TGG | + | chr1.3:26566403-26566422 | MS.gene073882:intron | 40.0% |
| ! | GCTTTTACACACCACTCTAA+AGG | + | chr1.3:26565192-26565211 | MS.gene073882:CDS | 40.0% |
| ! | GGATTTGTTTAAGGTAGTGG+AGG | + | chr1.3:26564921-26564940 | MS.gene073882:intron | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr1.3:26564442-26564461 | None:intergenic | 40.0% |
| ! | TGGACCAAGACCAAGAATTT+TGG | + | chr1.3:26563691-26563710 | MS.gene073882:intron | 40.0% |
| ! | TGTCGTTTAAGGTTTGTGCA+CGG | + | chr1.3:26563994-26564013 | MS.gene073882:intron | 40.0% |
| !! | TTTAAGGTAGTGGAGGCTAA+TGG | + | chr1.3:26564928-26564947 | MS.gene073882:intron | 40.0% |
| !!! | CTGGACCAAGAATTTTGGTT+TGG | - | chr1.3:26563826-26563845 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1.3:26564580-26564599 | MS.gene073882:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1.3:26564599-26564580 | None:intergenic | 40.0% |
| !!! | TGGGAGGAACAATTTTTGGT+CGG | - | chr1.3:26567147-26567166 | None:intergenic | 40.0% |
| !!! | TTTTTTGCATCAGACAGCCT+AGG | - | chr1.3:26568197-26568216 | None:intergenic | 40.0% |
| AAGCAACTGAGCTCGATTCA+TGG | - | chr1.3:26567167-26567186 | None:intergenic | 45.0% | |
| AAGCTTGCCTATCAATACCC+TGG | - | chr1.3:26566084-26566103 | None:intergenic | 45.0% | |
| AAGTCATGAGCAAAGGGCAA+TGG | + | chr1.3:26563110-26563129 | MS.gene073882:intron | 45.0% | |
| AATGCGCCTAGTAAGCTGAA+AGG | + | chr1.3:26564286-26564305 | MS.gene073882:intron | 45.0% | |
| AATTCAAGTATCCTGGCCGT+GGG | - | chr1.3:26567662-26567681 | None:intergenic | 45.0% | |
| ACAACAGACCCCGATATGAA+AGG | + | chr1.3:26565418-26565437 | MS.gene073882:intron | 45.0% | |
| ACCAATGACATTGAGCGTCT+CGG | + | chr1.3:26565686-26565705 | MS.gene073882:intron | 45.0% | |
| ACGGAGGGAGTAATTGACAT+TGG | - | chr1.3:26564322-26564341 | None:intergenic | 45.0% | |
| ACGGTAGAAGCTTCAAGCTT+TGG | - | chr1.3:26565830-26565849 | None:intergenic | 45.0% | |
| ACTGTTGGGATTACCGATGT+TGG | - | chr1.3:26564719-26564738 | None:intergenic | 45.0% | |
| AGCAACTGAGCTCGATTCAT+GGG | - | chr1.3:26567166-26567185 | None:intergenic | 45.0% | |
| AGCATGGGAATATGGAAAGG+AGG | + | chr1.3:26563629-26563648 | MS.gene073882:intron | 45.0% | |
| ATTCACAACTCTCTCCAGCT+CGG | + | chr1.3:26563301-26563320 | MS.gene073882:intron | 45.0% | |
| CACGATGGTACAATCCATGA+GGG | + | chr1.3:26563537-26563556 | MS.gene073882:intron | 45.0% | |
| CAGTTGGTTAGCATCACTGT+AGG | - | chr1.3:26567207-26567226 | None:intergenic | 45.0% | |
| CATGGGAATATGGAAAGGAG+TGG | + | chr1.3:26563631-26563650 | MS.gene073882:intron | 45.0% | |
| CCAGCACTTAGCTTCTTAAC+AGG | - | chr1.3:26567545-26567564 | None:intergenic | 45.0% | |
| CCTGTTAAGAAGCTAAGTGC+TGG | + | chr1.3:26567542-26567561 | MS.gene073882:intron | 45.0% | |
| CTGTCTTACAGCACATCTCA+AGG | + | chr1.3:26566371-26566390 | MS.gene073882:CDS | 45.0% | |
| GAAGAGAGAAGAGAGAGAAG+AGG | + | chr1.3:26563734-26563753 | MS.gene073882:intron | 45.0% | |
| GAGAGAAGAGAAGAGAGAGA+AGG | + | chr1.3:26563778-26563797 | MS.gene073882:intron | 45.0% | |
| GAGTGGGTACTTAAATGACC+AGG | + | chr1.3:26563872-26563891 | MS.gene073882:intron | 45.0% | |
| GCTACTGAGATGCGAAAGAA+GGG | + | chr1.3:26565145-26565164 | MS.gene073882:CDS | 45.0% | |
| TAGACGATGTATGAAGGCAG+TGG | - | chr1.3:26565232-26565251 | None:intergenic | 45.0% | |
| TAGATGAGTGTGGGAATCTG+TGG | - | chr1.3:26562859-26562878 | None:intergenic | 45.0% | |
| TAGGCACTAGGCAATGTGTT+CGG | + | chr1.3:26567852-26567871 | MS.gene073882:intron | 45.0% | |
| TATGGAAAGGAGTGGAAGCA+TGG | + | chr1.3:26563639-26563658 | MS.gene073882:intron | 45.0% | |
| TGCTACTGAGATGCGAAAGA+AGG | + | chr1.3:26565144-26565163 | MS.gene073882:CDS | 45.0% | |
| ! | AGTGTTTCTCTGGAAAGGAG+TGG | + | chr1.3:26563855-26563874 | MS.gene073882:intron | 45.0% |
| ! | ATGGAAAGGAGTGGAAGCAT+GGG | + | chr1.3:26563640-26563659 | MS.gene073882:intron | 45.0% |
| ! | ATGGATTGTACCATCGTGCA+AGG | - | chr1.3:26563535-26563554 | None:intergenic | 45.0% |
| ! | CCGGTTGATGTTGTTCTTGT+AGG | + | chr1.3:26567450-26567469 | MS.gene073882:intron | 45.0% |
| ! | GAATCTGTGGTAGTGTGATC+TGG | - | chr1.3:26562846-26562865 | None:intergenic | 45.0% |
| ! | GCCGCCAGGTATTTAGAATT+AGG | + | chr1.3:26564655-26564674 | MS.gene073882:intron | 45.0% |
| ! | GGAAGCATGGGAATATGGAA+AGG | + | chr1.3:26563652-26563671 | MS.gene073882:intron | 45.0% |
| ! | GTGTTTCTCTGGAAAGGAGT+GGG | + | chr1.3:26563856-26563875 | MS.gene073882:intron | 45.0% |
| ! | TACACACCACTCTAAAGGGA+AGG | + | chr1.3:26565197-26565216 | MS.gene073882:CDS | 45.0% |
| ! | TGGACCTGGACCAAGAATTT+TGG | - | chr1.3:26563831-26563850 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1.3:26564579-26564598 | MS.gene073882:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1.3:26564598-26564579 | None:intergenic | 45.0% |
| !!! | GGGAGGAACAATTTTTGGTC+GGG | - | chr1.3:26567146-26567165 | None:intergenic | 45.0% |
| !!! | GTCTAATGCCACTTTTCGGT+TGG | + | chr1.3:26567943-26567962 | MS.gene073882:intron | 45.0% |
| AACTGAGCTCGATTCATGGG+AGG | - | chr1.3:26567163-26567182 | None:intergenic | 50.0% | |
| AGAATGCCTTGGCAGATGAG+AGG | + | chr1.3:26563572-26563591 | MS.gene073882:intron | 50.0% | |
| CGTTGCTGCCTTTGCCAATT+TGG | - | chr1.3:26564816-26564835 | None:intergenic | 50.0% | |
| CTTCACAAAGCCTTCTAGCG+AGG | + | chr1.3:26562762-26562781 | MS.gene073882:CDS | 50.0% | |
| GAATGCCTTGGCAGATGAGA+GGG | + | chr1.3:26563573-26563592 | MS.gene073882:intron | 50.0% | |
| GAATTCAAGTATCCTGGCCG+TGG | - | chr1.3:26567663-26567682 | None:intergenic | 50.0% | |
| GAGAAACACTTGTGTGGACC+TGG | - | chr1.3:26563845-26563864 | None:intergenic | 50.0% | |
| GAGATGCGAAAGAAGGGAGT+TGG | + | chr1.3:26565151-26565170 | MS.gene073882:CDS | 50.0% | |
| GCAAAATGCTCCTCGCTAGA+AGG | - | chr1.3:26562775-26562794 | None:intergenic | 50.0% | |
| GCACGATGGTACAATCCATG+AGG | + | chr1.3:26563536-26563555 | MS.gene073882:intron | 50.0% | |
| GGTCCACACAAGTGTTTCTC+TGG | + | chr1.3:26563845-26563864 | MS.gene073882:intron | 50.0% | |
| GTGACAGGGTTGGGATTCAA+AGG | + | chr1.3:26563323-26563342 | MS.gene073882:intron | 50.0% | |
| TATGAAGCTGGAGTTCCGTG+AGG | + | chr1.3:26567108-26567127 | MS.gene073882:intron | 50.0% | |
| TCCGAGACGCTCAATGTCAT+TGG | - | chr1.3:26565690-26565709 | None:intergenic | 50.0% | |
| TGAGAACCAGCTCGATGAAC+TGG | + | chr1.3:26568097-26568116 | MS.gene073882:intron | 50.0% | |
| TGGACAACCACGACACTTGA+CGG | - | chr1.3:26566340-26566359 | None:intergenic | 50.0% | |
| TGGGGATCGTAGATGAGTGT+GGG | - | chr1.3:26562868-26562887 | None:intergenic | 50.0% | |
| TGTGCGGCGTGTCTTGTATA+AGG | + | chr1.3:26564838-26564857 | MS.gene073882:CDS | 50.0% | |
| ! | CTCGCTAGAAGGCTTTGTGA+AGG | - | chr1.3:26562764-26562783 | None:intergenic | 50.0% |
| ! | GGAGTGGAAGCATGGGAATA+TGG | + | chr1.3:26563647-26563666 | MS.gene073882:intron | 50.0% |
| AAACTTGGACTCCTGCGCTG+GGG | - | chr1.3:26562886-26562905 | None:intergenic | 55.0% | |
| AAGTATCCTGGCCGTGGGTA+GGG | - | chr1.3:26567657-26567676 | None:intergenic | 55.0% | |
| CAAACTTGGACTCCTGCGCT+GGG | - | chr1.3:26562887-26562906 | None:intergenic | 55.0% | |
| CAAAGGCAGCAACGACTGTG+CGG | + | chr1.3:26564822-26564841 | MS.gene073882:CDS | 55.0% | |
| CCTAGGTGTGAGTGATGGCT+CGG | - | chr1.3:26568180-26568199 | None:intergenic | 55.0% | |
| CTGGGGATCGTAGATGAGTG+TGG | - | chr1.3:26562869-26562888 | None:intergenic | 55.0% | |
| CTGGTTCCAGTTCATCGAGC+TGG | - | chr1.3:26568106-26568125 | None:intergenic | 55.0% | |
| GACAGCCTAGGTGTGAGTGA+TGG | - | chr1.3:26568185-26568204 | None:intergenic | 55.0% | |
| GAGTGTGCTGTGTGTGTGTG+TGG | + | chr1.3:26566727-26566746 | MS.gene073882:intron | 55.0% | |
| GCTCGGATGCATTCTTCTGC+TGG | - | chr1.3:26568163-26568182 | None:intergenic | 55.0% | |
| GGCGAGTTGCGTCTTCACAA+AGG | + | chr1.3:26567563-26567582 | MS.gene073882:intron | 55.0% | |
| GGGCATTACGTACCTCCTCA+CGG | - | chr1.3:26567126-26567145 | None:intergenic | 55.0% | |
| TCAAACTTGGACTCCTGCGC+TGG | - | chr1.3:26562888-26562907 | None:intergenic | 55.0% | |
| ACACGCCCTCTCATCTGCCA+AGG | - | chr1.3:26563581-26563600 | None:intergenic | 60.0% | |
| AGTATCCTGGCCGTGGGTAG+GGG | - | chr1.3:26567656-26567675 | None:intergenic | 60.0% | |
| CAAGTATCCTGGCCGTGGGT+AGG | - | chr1.3:26567658-26567677 | None:intergenic | 60.0% | |
| CCGAGCCATCACTCACACCT+AGG | + | chr1.3:26568177-26568196 | MS.gene073882:CDS | 60.0% | |
| GAAGCTGGAGTTCCGTGAGG+AGG | + | chr1.3:26567111-26567130 | MS.gene073882:intron | 60.0% | |
| TCATCTACGATCCCCAGCGC+AGG | + | chr1.3:26562872-26562891 | MS.gene073882:CDS | 60.0% | |
| ! | ACTCTCTCCAGCTCGGTGAC+AGG | + | chr1.3:26563308-26563327 | MS.gene073882:intron | 60.0% |
| ! | ATGAGAGGGCGTGTGGTGCA+TGG | + | chr1.3:26563587-26563606 | MS.gene073882:intron | 60.0% |
| ! | CTCTCTCCAGCTCGGTGACA+GGG | + | chr1.3:26563309-26563328 | MS.gene073882:intron | 60.0% |
| ! | GGATTCGCCGTCAAGTGTCG+TGG | + | chr1.3:26566330-26566349 | MS.gene073882:CDS | 60.0% |
| ! | TCCAGCTCGGTGACAGGGTT+GGG | + | chr1.3:26563314-26563333 | MS.gene073882:intron | 60.0% |
| ! | TTGGCAGATGAGAGGGCGTG+TGG | + | chr1.3:26563580-26563599 | MS.gene073882:intron | 60.0% |
| GTGGCACTTGCCCCTACCCA+CGG | + | chr1.3:26567643-26567662 | MS.gene073882:intron | 65.0% | |
| TCCCAACCCTGTCACCGAGC+TGG | - | chr1.3:26563318-26563337 | None:intergenic | 65.0% | |
| ! | CTCCAGCTCGGTGACAGGGT+TGG | + | chr1.3:26563313-26563332 | MS.gene073882:intron | 65.0% |
| ACTTGCCCCTACCCACGGCC+AGG | + | chr1.3:26567648-26567667 | MS.gene073882:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 26562754 | 26568467 | 26562754 | ID=MS.gene073882 |
| chr1.3 | mRNA | 26562754 | 26568467 | 26562754 | ID=MS.gene073882.t1;Parent=MS.gene073882 |
| chr1.3 | exon | 26562754 | 26562944 | 26562754 | ID=MS.gene073882.t1.exon1;Parent=MS.gene073882.t1 |
| chr1.3 | CDS | 26562754 | 26562944 | 26562754 | ID=cds.MS.gene073882.t1;Parent=MS.gene073882.t1 |
| chr1.3 | exon | 26564760 | 26564859 | 26564760 | ID=MS.gene073882.t1.exon2;Parent=MS.gene073882.t1 |
| chr1.3 | CDS | 26564760 | 26564859 | 26564760 | ID=cds.MS.gene073882.t1;Parent=MS.gene073882.t1 |
| chr1.3 | exon | 26564934 | 26564949 | 26564934 | ID=MS.gene073882.t1.exon3;Parent=MS.gene073882.t1 |
| chr1.3 | CDS | 26564934 | 26564949 | 26564934 | ID=cds.MS.gene073882.t1;Parent=MS.gene073882.t1 |
| chr1.3 | exon | 26565131 | 26565218 | 26565131 | ID=MS.gene073882.t1.exon4;Parent=MS.gene073882.t1 |
| chr1.3 | CDS | 26565131 | 26565218 | 26565131 | ID=cds.MS.gene073882.t1;Parent=MS.gene073882.t1 |
| chr1.3 | exon | 26565425 | 26565461 | 26565425 | ID=MS.gene073882.t1.exon5;Parent=MS.gene073882.t1 |
| chr1.3 | CDS | 26565425 | 26565461 | 26565425 | ID=cds.MS.gene073882.t1;Parent=MS.gene073882.t1 |
| chr1.3 | exon | 26566318 | 26566392 | 26566318 | ID=MS.gene073882.t1.exon6;Parent=MS.gene073882.t1 |
| chr1.3 | CDS | 26566318 | 26566392 | 26566318 | ID=cds.MS.gene073882.t1;Parent=MS.gene073882.t1 |
| chr1.3 | exon | 26568107 | 26568219 | 26568107 | ID=MS.gene073882.t1.exon7;Parent=MS.gene073882.t1 |
| chr1.3 | CDS | 26568107 | 26568219 | 26568107 | ID=cds.MS.gene073882.t1;Parent=MS.gene073882.t1 |
| chr1.3 | exon | 26568395 | 26568467 | 26568395 | ID=MS.gene073882.t1.exon8;Parent=MS.gene073882.t1 |
| chr1.3 | CDS | 26568395 | 26568467 | 26568395 | ID=cds.MS.gene073882.t1;Parent=MS.gene073882.t1 |
| Gene Sequence |
| Protein sequence |
