Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07404.t1 | XP_003591816.1 | 98.3 | 178 | 3 | 0 | 1 | 178 | 1 | 178 | 7.00E-94 | 353.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07404.t1 | P32294 | 70.8 | 192 | 42 | 3 | 1 | 178 | 1 | 192 | 1.9e-71 | 270.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07404.t1 | G7I486 | 98.3 | 178 | 3 | 0 | 1 | 178 | 1 | 178 | 5.0e-94 | 353.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene07404.t1 | TR | AUX/IAA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04915 | MS.gene07404 | 0.822282 | 2.58E-53 | -1.69E-46 |
MS.gene04917 | MS.gene07404 | 0.822424 | 2.39E-53 | -1.69E-46 |
MS.gene049887 | MS.gene07404 | 0.810263 | 1.26E-50 | -1.69E-46 |
MS.gene050114 | MS.gene07404 | 0.811959 | 5.39E-51 | -1.69E-46 |
MS.gene050317 | MS.gene07404 | 0.817299 | 3.54E-52 | -1.69E-46 |
MS.gene050320 | MS.gene07404 | 0.800787 | 1.22E-48 | -1.69E-46 |
MS.gene050838 | MS.gene07404 | 0.837323 | 5.56E-57 | -1.69E-46 |
MS.gene051746 | MS.gene07404 | 0.809557 | 1.78E-50 | -1.69E-46 |
MS.gene051748 | MS.gene07404 | 0.831752 | 1.40E-55 | -1.69E-46 |
MS.gene051756 | MS.gene07404 | 0.805313 | 1.42E-49 | -1.69E-46 |
MS.gene053109 | MS.gene07404 | 0.803238 | 3.84E-49 | -1.69E-46 |
MS.gene053167 | MS.gene07404 | 0.804104 | 2.54E-49 | -1.69E-46 |
MS.gene053677 | MS.gene07404 | 0.818693 | 1.72E-52 | -1.69E-46 |
MS.gene055174 | MS.gene07404 | 0.816514 | 5.32E-52 | -1.69E-46 |
MS.gene055311 | MS.gene07404 | 0.813891 | 2.03E-51 | -1.69E-46 |
MS.gene055314 | MS.gene07404 | 0.803524 | 3.35E-49 | -1.69E-46 |
MS.gene055424 | MS.gene07404 | 0.800857 | 1.18E-48 | -1.69E-46 |
MS.gene056181 | MS.gene07404 | 0.808584 | 2.88E-50 | -1.69E-46 |
MS.gene056752 | MS.gene07404 | 0.823904 | 1.08E-53 | -1.69E-46 |
MS.gene057057 | MS.gene07404 | 0.806339 | 8.63E-50 | -1.69E-46 |
MS.gene057094 | MS.gene07404 | 0.820365 | 7.13E-53 | -1.69E-46 |
MS.gene057234 | MS.gene07404 | 0.80063 | 1.32E-48 | -1.69E-46 |
MS.gene057452 | MS.gene07404 | -0.832036 | 1.19E-55 | -1.69E-46 |
MS.gene057999 | MS.gene07404 | 0.801266 | 9.76E-49 | -1.69E-46 |
MS.gene058074 | MS.gene07404 | 0.801965 | 7.02E-49 | -1.69E-46 |
MS.gene058654 | MS.gene07404 | 0.813586 | 2.37E-51 | -1.69E-46 |
MS.gene058758 | MS.gene07404 | 0.805756 | 1.14E-49 | -1.69E-46 |
MS.gene058852 | MS.gene07404 | 0.807189 | 5.71E-50 | -1.69E-46 |
MS.gene059171 | MS.gene07404 | 0.857152 | 1.98E-62 | -1.69E-46 |
MS.gene060563 | MS.gene07404 | 0.801969 | 7.01E-49 | -1.69E-46 |
MS.gene060869 | MS.gene07404 | 0.8295 | 4.97E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07404.t1 | MTR_1g076270 | 98.315 | 178 | 3 | 0 | 1 | 178 | 1 | 178 | 7.20e-129 | 359 |
MS.gene07404.t1 | MTR_1g093350 | 98.315 | 178 | 3 | 0 | 1 | 178 | 1 | 178 | 7.20e-129 | 359 |
MS.gene07404.t1 | MTR_1g040675 | 73.626 | 182 | 34 | 3 | 11 | 178 | 1 | 182 | 4.96e-92 | 266 |
MS.gene07404.t1 | MTR_1g070830 | 59.701 | 201 | 58 | 5 | 1 | 178 | 1 | 201 | 6.02e-80 | 236 |
MS.gene07404.t1 | MTR_1g040675 | 70.370 | 162 | 34 | 3 | 11 | 158 | 1 | 162 | 1.48e-75 | 223 |
MS.gene07404.t1 | MTR_6g488150 | 42.609 | 230 | 72 | 5 | 9 | 178 | 13 | 242 | 5.19e-53 | 169 |
MS.gene07404.t1 | MTR_1g093240 | 45.161 | 217 | 70 | 6 | 11 | 178 | 8 | 224 | 7.77e-51 | 163 |
MS.gene07404.t1 | MTR_1g093240 | 45.161 | 217 | 70 | 6 | 11 | 178 | 8 | 224 | 1.16e-50 | 163 |
MS.gene07404.t1 | MTR_1g080860 | 42.291 | 227 | 72 | 6 | 11 | 178 | 15 | 241 | 1.78e-49 | 160 |
MS.gene07404.t1 | MTR_1g080860 | 42.291 | 227 | 72 | 6 | 11 | 178 | 15 | 241 | 2.21e-49 | 160 |
MS.gene07404.t1 | MTR_7g096090 | 53.642 | 151 | 44 | 4 | 53 | 178 | 89 | 238 | 4.96e-48 | 156 |
MS.gene07404.t1 | MTR_5g030710 | 45.304 | 181 | 68 | 4 | 29 | 178 | 143 | 323 | 1.25e-47 | 158 |
MS.gene07404.t1 | MTR_1g070520 | 41.441 | 222 | 65 | 6 | 16 | 178 | 18 | 233 | 1.87e-46 | 152 |
MS.gene07404.t1 | MTR_5g067350 | 47.126 | 174 | 62 | 5 | 30 | 178 | 167 | 335 | 1.61e-45 | 153 |
MS.gene07404.t1 | MTR_8g067530 | 47.159 | 176 | 64 | 5 | 29 | 178 | 172 | 344 | 1.81e-45 | 153 |
MS.gene07404.t1 | MTR_2g101500 | 53.020 | 149 | 43 | 4 | 57 | 178 | 166 | 314 | 2.38e-45 | 152 |
MS.gene07404.t1 | MTR_8g103030 | 47.802 | 182 | 66 | 6 | 26 | 178 | 100 | 281 | 7.37e-44 | 147 |
MS.gene07404.t1 | MTR_4g011880 | 47.337 | 169 | 80 | 4 | 11 | 178 | 6 | 166 | 9.15e-42 | 138 |
MS.gene07404.t1 | MTR_1g093240 | 41.624 | 197 | 66 | 6 | 11 | 158 | 8 | 204 | 3.91e-38 | 130 |
MS.gene07404.t1 | MTR_2g102490 | 44.186 | 172 | 75 | 6 | 13 | 170 | 16 | 180 | 3.70e-31 | 112 |
MS.gene07404.t1 | MTR_6g488150 | 38.182 | 165 | 56 | 4 | 9 | 127 | 13 | 177 | 3.01e-28 | 104 |
MS.gene07404.t1 | MTR_1g069495 | 33.333 | 177 | 57 | 4 | 62 | 178 | 81 | 256 | 3.03e-26 | 101 |
MS.gene07404.t1 | MTR_8g014520 | 36.420 | 162 | 57 | 5 | 55 | 174 | 103 | 260 | 4.60e-25 | 97.8 |
MS.gene07404.t1 | MTR_4g124300 | 37.984 | 129 | 77 | 2 | 48 | 175 | 58 | 184 | 4.83e-25 | 95.9 |
MS.gene07404.t1 | MTR_8g014520 | 36.420 | 162 | 57 | 5 | 55 | 174 | 103 | 260 | 4.86e-25 | 97.8 |
MS.gene07404.t1 | MTR_2g100780 | 32.558 | 172 | 67 | 3 | 50 | 174 | 85 | 254 | 1.78e-24 | 96.7 |
MS.gene07404.t1 | MTR_2g100780 | 33.721 | 172 | 65 | 4 | 50 | 174 | 85 | 254 | 2.11e-24 | 96.3 |
MS.gene07404.t1 | MTR_5g067350 | 44.037 | 109 | 44 | 3 | 30 | 125 | 167 | 271 | 2.05e-21 | 88.6 |
MS.gene07404.t1 | MTR_1g085750 | 43.820 | 89 | 49 | 1 | 84 | 171 | 82 | 170 | 1.68e-19 | 81.3 |
MS.gene07404.t1 | MTR_7g110790 | 40.426 | 94 | 55 | 1 | 79 | 171 | 62 | 155 | 1.24e-18 | 78.6 |
MS.gene07404.t1 | MTR_3g106850 | 31.538 | 130 | 69 | 3 | 64 | 178 | 89 | 213 | 1.61e-18 | 79.7 |
MS.gene07404.t1 | MTR_4g115075 | 30.579 | 121 | 63 | 3 | 64 | 171 | 93 | 205 | 3.49e-16 | 73.2 |
MS.gene07404.t1 | MTR_1g085750 | 42.105 | 76 | 43 | 1 | 84 | 158 | 82 | 157 | 1.96e-13 | 65.1 |
MS.gene07404.t1 | MTR_1g109510 | 37.607 | 117 | 62 | 4 | 64 | 171 | 54 | 168 | 2.91e-13 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07404.t1 | AT1G04240 | 61.326 | 181 | 57 | 4 | 11 | 178 | 5 | 185 | 2.26e-77 | 229 |
MS.gene07404.t1 | AT1G04240 | 61.326 | 181 | 57 | 4 | 11 | 178 | 105 | 285 | 1.21e-76 | 231 |
MS.gene07404.t1 | AT5G43700 | 62.295 | 183 | 62 | 3 | 1 | 178 | 1 | 181 | 1.59e-76 | 227 |
MS.gene07404.t1 | AT3G23030 | 60.112 | 178 | 53 | 4 | 5 | 175 | 1 | 167 | 7.33e-69 | 207 |
MS.gene07404.t1 | AT3G23030 | 59.777 | 179 | 54 | 4 | 4 | 175 | 87 | 254 | 2.19e-68 | 209 |
MS.gene07404.t1 | AT4G14560 | 61.677 | 167 | 57 | 3 | 9 | 175 | 5 | 164 | 2.32e-65 | 198 |
MS.gene07404.t1 | AT3G04730 | 45.089 | 224 | 66 | 6 | 11 | 178 | 2 | 224 | 1.74e-53 | 170 |
MS.gene07404.t1 | AT4G14550 | 45.833 | 216 | 69 | 7 | 11 | 178 | 1 | 216 | 1.04e-52 | 168 |
MS.gene07404.t1 | AT4G14550 | 46.759 | 216 | 67 | 8 | 11 | 178 | 1 | 216 | 1.49e-52 | 167 |
MS.gene07404.t1 | AT3G23050 | 44.889 | 225 | 67 | 8 | 11 | 178 | 6 | 230 | 2.22e-51 | 165 |
MS.gene07404.t1 | AT1G04250 | 43.256 | 215 | 73 | 5 | 10 | 178 | 6 | 217 | 8.53e-51 | 163 |
MS.gene07404.t1 | AT4G29080 | 42.248 | 258 | 61 | 8 | 9 | 178 | 36 | 293 | 1.31e-50 | 165 |
MS.gene07404.t1 | AT3G15540 | 45.989 | 187 | 76 | 5 | 11 | 177 | 6 | 187 | 4.47e-45 | 147 |
MS.gene07404.t1 | AT1G15580 | 49.419 | 172 | 70 | 6 | 9 | 177 | 6 | 163 | 7.03e-44 | 143 |
MS.gene07404.t1 | AT2G22670 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.27e-42 | 144 |
MS.gene07404.t1 | AT2G22670 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.27e-42 | 144 |
MS.gene07404.t1 | AT2G22670 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.62e-42 | 144 |
MS.gene07404.t1 | AT2G22670 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.62e-42 | 144 |
MS.gene07404.t1 | AT2G22670 | 47.468 | 158 | 56 | 4 | 48 | 178 | 167 | 324 | 2.78e-42 | 144 |
MS.gene07404.t1 | AT1G52830 | 45.556 | 180 | 83 | 5 | 11 | 177 | 6 | 183 | 3.21e-42 | 140 |
MS.gene07404.t1 | AT5G65670 | 50.345 | 145 | 46 | 4 | 60 | 178 | 180 | 324 | 2.40e-41 | 142 |
MS.gene07404.t1 | AT5G65670 | 50.345 | 145 | 46 | 4 | 60 | 178 | 180 | 324 | 2.91e-41 | 142 |
MS.gene07404.t1 | AT4G14550 | 43.590 | 195 | 62 | 8 | 11 | 157 | 1 | 195 | 4.85e-40 | 134 |
MS.gene07404.t1 | AT3G23050 | 41.463 | 205 | 63 | 8 | 11 | 158 | 6 | 210 | 2.26e-38 | 130 |
MS.gene07404.t1 | AT4G28640 | 39.881 | 168 | 63 | 5 | 48 | 177 | 73 | 240 | 1.73e-30 | 111 |
MS.gene07404.t1 | AT4G28640 | 39.881 | 168 | 63 | 5 | 48 | 177 | 73 | 240 | 2.08e-30 | 111 |
MS.gene07404.t1 | AT2G33310 | 38.587 | 184 | 64 | 6 | 44 | 178 | 47 | 230 | 2.33e-30 | 111 |
MS.gene07404.t1 | AT2G33310 | 38.587 | 184 | 64 | 6 | 44 | 178 | 47 | 230 | 2.33e-30 | 111 |
MS.gene07404.t1 | AT4G28640 | 39.881 | 168 | 63 | 5 | 48 | 177 | 73 | 240 | 1.18e-29 | 110 |
MS.gene07404.t1 | AT2G33310 | 38.378 | 185 | 64 | 6 | 44 | 178 | 47 | 231 | 1.91e-29 | 108 |
MS.gene07404.t1 | AT1G04550 | 35.754 | 179 | 74 | 4 | 40 | 178 | 46 | 223 | 4.69e-29 | 107 |
MS.gene07404.t1 | AT3G16500 | 31.140 | 228 | 97 | 7 | 7 | 174 | 25 | 252 | 6.63e-27 | 102 |
MS.gene07404.t1 | AT3G16500 | 31.336 | 217 | 93 | 6 | 14 | 174 | 36 | 252 | 6.81e-27 | 102 |
MS.gene07404.t1 | AT5G25890 | 35.057 | 174 | 87 | 6 | 14 | 175 | 5 | 164 | 3.83e-26 | 98.6 |
MS.gene07404.t1 | AT4G14550 | 42.384 | 151 | 51 | 7 | 11 | 125 | 1 | 151 | 7.82e-26 | 97.8 |
MS.gene07404.t1 | AT1G51950 | 33.333 | 213 | 88 | 7 | 14 | 174 | 40 | 250 | 2.62e-25 | 98.6 |
MS.gene07404.t1 | AT3G17600 | 36.232 | 138 | 74 | 3 | 42 | 171 | 23 | 154 | 2.72e-25 | 95.9 |
MS.gene07404.t1 | AT3G23050 | 40.123 | 162 | 52 | 7 | 11 | 127 | 6 | 167 | 1.01e-24 | 94.7 |
MS.gene07404.t1 | AT1G04100 | 38.788 | 165 | 50 | 4 | 65 | 178 | 95 | 259 | 2.78e-24 | 95.9 |
MS.gene07404.t1 | AT2G46990 | 44.186 | 86 | 48 | 0 | 86 | 171 | 85 | 170 | 2.51e-20 | 83.6 |
MS.gene07404.t1 | AT3G62100 | 45.349 | 86 | 47 | 0 | 86 | 171 | 83 | 168 | 2.53e-20 | 83.6 |
MS.gene07404.t1 | AT1G80390 | 40.171 | 117 | 60 | 3 | 12 | 124 | 15 | 125 | 1.55e-18 | 77.4 |
MS.gene07404.t1 | AT2G46990 | 45.205 | 73 | 40 | 0 | 86 | 158 | 85 | 157 | 3.02e-15 | 69.7 |
MS.gene07404.t1 | AT3G62100 | 45.205 | 73 | 40 | 0 | 86 | 158 | 83 | 155 | 1.00e-14 | 68.2 |
MS.gene07404.t1 | AT4G32280 | 34.884 | 86 | 51 | 2 | 86 | 171 | 118 | 198 | 2.91e-13 | 65.5 |
MS.gene07404.t1 | AT4G32280 | 34.884 | 86 | 51 | 2 | 86 | 171 | 160 | 240 | 8.68e-13 | 64.7 |
MS.gene07404.t1 | AT2G01200 | 38.614 | 101 | 59 | 2 | 76 | 175 | 89 | 187 | 1.66e-11 | 60.5 |
MS.gene07404.t1 | AT2G01200 | 38.614 | 101 | 59 | 2 | 76 | 175 | 89 | 187 | 1.66e-11 | 60.5 |
MS.gene07404.t1 | AT1G15050 | 37.778 | 90 | 53 | 2 | 87 | 175 | 62 | 149 | 6.07e-11 | 58.2 |
Find 35 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACAAGAGGCTGAGGCTTC+TGG | 0.222165 | 1.2:-64197632 | MS.gene07404:CDS |
TTCTTCCTGTAAGATCTTAT+TGG | 0.258525 | 1.2:+64197659 | None:intergenic |
AAGATTGATTTGAGGGTCTA+TGG | 0.290855 | 1.2:-64197566 | MS.gene07404:CDS |
TGCACAACTTCTTAAAGCTT+TGG | 0.324497 | 1.2:-64197537 | MS.gene07404:CDS |
TCCTTTGAAGTTTCAGTCAA+TGG | 0.340316 | 1.2:+64197854 | None:intergenic |
TATGTGAAAGTGAGTTTAGA+TGG | 0.375233 | 1.2:-64197605 | MS.gene07404:CDS |
CCTTAGGAAGATTGATTTGA+GGG | 0.380707 | 1.2:-64197573 | MS.gene07404:CDS |
GAGCTAAGATTAGGACTTCC+AGG | 0.382329 | 1.2:-64197923 | MS.gene07404:CDS |
ACTTGCAGGGCTAAGATAGT+AGG | 0.383062 | 1.2:-64197689 | MS.gene07404:intron |
TACAAGAGGCTGAGGCTTCT+GGG | 0.384427 | 1.2:-64197631 | MS.gene07404:CDS |
CCATCTTTATCTTCATATGT+AGG | 0.415484 | 1.2:+64197446 | None:intergenic |
GGCCACCAATAAGATCTTAC+AGG | 0.438714 | 1.2:-64197664 | MS.gene07404:CDS |
GATGGTGATTGGATGTTAGT+TGG | 0.443053 | 1.2:-64197428 | MS.gene07404:CDS |
TAGATGGAGCTCCTTACCTT+AGG | 0.462831 | 1.2:-64197589 | MS.gene07404:CDS |
TTCCTGTAAGATCTTATTGG+TGG | 0.463988 | 1.2:+64197662 | None:intergenic |
ATGAAGATAAAGATGGTGAT+TGG | 0.480229 | 1.2:-64197439 | MS.gene07404:CDS |
ACCTTAGGAAGATTGATTTG+AGG | 0.502641 | 1.2:-64197574 | MS.gene07404:CDS |
AAGGCTACTGAGCTAAGATT+AGG | 0.511132 | 1.2:-64197932 | MS.gene07404:CDS |
AAATCAATCTTCCTAAGGTA+AGG | 0.513222 | 1.2:+64197578 | None:intergenic |
CCCTCAAATCAATCTTCCTA+AGG | 0.515293 | 1.2:+64197573 | None:intergenic |
CTTGCAGGGCTAAGATAGTA+GGG | 0.554533 | 1.2:-64197688 | MS.gene07404:intron |
GAACAGTTTACAAGAGGCTG+AGG | 0.558668 | 1.2:-64197639 | MS.gene07404:CDS |
TGTTAGTTGGAGATGTTCCA+TGG | 0.566837 | 1.2:-64197415 | MS.gene07404:CDS |
CCTACATATGAAGATAAAGA+TGG | 0.572828 | 1.2:-64197446 | MS.gene07404:CDS |
ACCATTGACTGAAACTTCAA+AGG | 0.585923 | 1.2:-64197855 | MS.gene07404:CDS |
TGAGAATGATCTCAACATGA+AGG | 0.586923 | 1.2:-64197951 | MS.gene07404:CDS |
ATTGATTTGAGGGTCTATGG+TGG | 0.593128 | 1.2:-64197563 | MS.gene07404:CDS |
CAGGAAGAACAGTTTACAAG+AGG | 0.599653 | 1.2:-64197645 | MS.gene07404:CDS |
GTTAGTTGGAGATGTTCCAT+GGG | 0.617620 | 1.2:-64197414 | MS.gene07404:CDS |
AGCATGTTCAAGTTAACCAT+AGG | 0.640019 | 1.2:-64197512 | MS.gene07404:CDS |
AAAAGACTAAGAATCATGAA+AGG | 0.648151 | 1.2:-64197260 | MS.gene07404:CDS |
AGCTAAGATTAGGACTTCCA+GGG | 0.649383 | 1.2:-64197922 | MS.gene07404:CDS |
ATGAAAGGAACAGAAGCTAG+AGG | 0.651214 | 1.2:-64197245 | MS.gene07404:CDS |
ACTGAAACTTCAAAGGACAG+TGG | 0.678691 | 1.2:-64197848 | MS.gene07404:CDS |
GCAGGGCTAAGATAGTAGGG+TGG | 0.770265 | 1.2:-64197685 | MS.gene07404:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTCTTTCTACCTTATAAA+GGG | - | chr1.2:64197458-64197477 | MS.gene07404:CDS | 20.0% |
!!! | TTTTTCTTTCTACCTTATAA+AGG | - | chr1.2:64197457-64197476 | MS.gene07404:CDS | 20.0% |
! | AAAAGACTAAGAATCATGAA+AGG | - | chr1.2:64197949-64197968 | MS.gene07404:CDS | 25.0% |
! | GCATATATAGAGAGAAAAAA+AGG | + | chr1.2:64197828-64197847 | None:intergenic | 25.0% |
! | TCTGAAAAAGAAGGTTATAA+AGG | - | chr1.2:64197727-64197746 | MS.gene07404:intron | 25.0% |
!! | ATCTTTTGAACTTACTTTGA+AGG | + | chr1.2:64197415-64197434 | None:intergenic | 25.0% |
!!! | AGAATATTTTTTTGACTTGC+AGG | - | chr1.2:64197506-64197525 | MS.gene07404:CDS | 25.0% |
!!! | GAATATTTTTTTGACTTGCA+GGG | - | chr1.2:64197507-64197526 | MS.gene07404:CDS | 25.0% |
!!! | TTTTTCAGAATAATCACCTA+TGG | + | chr1.2:64197716-64197735 | None:intergenic | 25.0% |
AAATCAATCTTCCTAAGGTA+AGG | + | chr1.2:64197634-64197653 | None:intergenic | 30.0% | |
ATGAAGATAAAGATGGTGAT+TGG | - | chr1.2:64197770-64197789 | MS.gene07404:intron | 30.0% | |
CCATCTTTATCTTCATATGT+AGG | + | chr1.2:64197766-64197785 | None:intergenic | 30.0% | |
CCTACATATGAAGATAAAGA+TGG | - | chr1.2:64197763-64197782 | MS.gene07404:intron | 30.0% | |
TATGTGAAAGTGAGTTTAGA+TGG | - | chr1.2:64197604-64197623 | MS.gene07404:CDS | 30.0% | |
TTCTTCCTGTAAGATCTTAT+TGG | + | chr1.2:64197553-64197572 | None:intergenic | 30.0% | |
! | GGTGATTATTCTGAAAAAGA+AGG | - | chr1.2:64197718-64197737 | MS.gene07404:intron | 30.0% |
!! | TTTTGAACTTACTTTGAAGG+AGG | + | chr1.2:64197412-64197431 | None:intergenic | 30.0% |
AAAAAAAGGACTTACTCCCA+TGG | + | chr1.2:64197814-64197833 | None:intergenic | 35.0% | |
ACATCATGCAACCCTTTATA+AGG | + | chr1.2:64197472-64197491 | None:intergenic | 35.0% | |
TGAGAATGATCTCAACATGA+AGG | - | chr1.2:64197258-64197277 | MS.gene07404:CDS | 35.0% | |
TGCACAACTTCTTAAAGCTT+TGG | - | chr1.2:64197672-64197691 | MS.gene07404:CDS | 35.0% | |
TTCCTGTAAGATCTTATTGG+TGG | + | chr1.2:64197550-64197569 | None:intergenic | 35.0% | |
! | ACCATTGACTGAAACTTCAA+AGG | - | chr1.2:64197354-64197373 | MS.gene07404:intron | 35.0% |
! | AGCATGTTCAAGTTAACCAT+AGG | - | chr1.2:64197697-64197716 | MS.gene07404:intron | 35.0% |
! | TTCAGTCAATGGTCTTTTGT+TGG | + | chr1.2:64197347-64197366 | None:intergenic | 35.0% |
!! | AAGATTGATTTGAGGGTCTA+TGG | - | chr1.2:64197643-64197662 | MS.gene07404:CDS | 35.0% |
!! | ACCTTAGGAAGATTGATTTG+AGG | - | chr1.2:64197635-64197654 | MS.gene07404:CDS | 35.0% |
!! | CCTTAGGAAGATTGATTTGA+GGG | - | chr1.2:64197636-64197655 | MS.gene07404:CDS | 35.0% |
!! | TCCTTTGAAGTTTCAGTCAA+TGG | + | chr1.2:64197358-64197377 | None:intergenic | 35.0% |
AAGGCTACTGAGCTAAGATT+AGG | - | chr1.2:64197277-64197296 | MS.gene07404:CDS | 40.0% | |
ACTGAAACTTCAAAGGACAG+TGG | - | chr1.2:64197361-64197380 | MS.gene07404:intron | 40.0% | |
AGCTAAGATTAGGACTTCCA+GGG | - | chr1.2:64197287-64197306 | MS.gene07404:intron | 40.0% | |
ATGAAAGGAACAGAAGCTAG+AGG | - | chr1.2:64197964-64197983 | MS.gene07404:CDS | 40.0% | |
CAGGAAGAACAGTTTACAAG+AGG | - | chr1.2:64197564-64197583 | MS.gene07404:CDS | 40.0% | |
CCCTCAAATCAATCTTCCTA+AGG | + | chr1.2:64197639-64197658 | None:intergenic | 40.0% | |
GATGGTGATTGGATGTTAGT+TGG | - | chr1.2:64197781-64197800 | MS.gene07404:intron | 40.0% | |
GTTAGTTGGAGATGTTCCAT+GGG | - | chr1.2:64197795-64197814 | MS.gene07404:intron | 40.0% | |
TGTTAGTTGGAGATGTTCCA+TGG | - | chr1.2:64197794-64197813 | MS.gene07404:intron | 40.0% | |
! | TCTTCATTTTGTTCTGTCCC+TGG | + | chr1.2:64197307-64197326 | None:intergenic | 40.0% |
!! | ATTGATTTGAGGGTCTATGG+TGG | - | chr1.2:64197646-64197665 | MS.gene07404:CDS | 40.0% |
ACTTGCAGGGCTAAGATAGT+AGG | - | chr1.2:64197520-64197539 | MS.gene07404:CDS | 45.0% | |
CTTGCAGGGCTAAGATAGTA+GGG | - | chr1.2:64197521-64197540 | MS.gene07404:CDS | 45.0% | |
GAACAGTTTACAAGAGGCTG+AGG | - | chr1.2:64197570-64197589 | MS.gene07404:CDS | 45.0% | |
GAGCTAAGATTAGGACTTCC+AGG | - | chr1.2:64197286-64197305 | MS.gene07404:intron | 45.0% | |
GGCCACCAATAAGATCTTAC+AGG | - | chr1.2:64197545-64197564 | MS.gene07404:CDS | 45.0% | |
TAGATGGAGCTCCTTACCTT+AGG | - | chr1.2:64197620-64197639 | MS.gene07404:CDS | 45.0% | |
TACAAGAGGCTGAGGCTTCT+GGG | - | chr1.2:64197578-64197597 | MS.gene07404:CDS | 50.0% | |
TTACAAGAGGCTGAGGCTTC+TGG | - | chr1.2:64197577-64197596 | MS.gene07404:CDS | 50.0% | |
GCAGGGCTAAGATAGTAGGG+TGG | - | chr1.2:64197524-64197543 | MS.gene07404:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 64197238 | 64197993 | 64197238 | ID=MS.gene07404 |
chr1.2 | mRNA | 64197238 | 64197993 | 64197238 | ID=MS.gene07404.t1;Parent=MS.gene07404 |
chr1.2 | exon | 64197812 | 64197993 | 64197812 | ID=MS.gene07404.t1.exon1;Parent=MS.gene07404.t1 |
chr1.2 | CDS | 64197812 | 64197993 | 64197812 | ID=cds.MS.gene07404.t1;Parent=MS.gene07404.t1 |
chr1.2 | exon | 64197413 | 64197703 | 64197413 | ID=MS.gene07404.t1.exon2;Parent=MS.gene07404.t1 |
chr1.2 | CDS | 64197413 | 64197703 | 64197413 | ID=cds.MS.gene07404.t1;Parent=MS.gene07404.t1 |
chr1.2 | exon | 64197238 | 64197301 | 64197238 | ID=MS.gene07404.t1.exon3;Parent=MS.gene07404.t1 |
chr1.2 | CDS | 64197238 | 64197301 | 64197238 | ID=cds.MS.gene07404.t1;Parent=MS.gene07404.t1 |
Gene Sequence |
Protein sequence |