AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene074587


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074587.t1 MTR_8g022290 95.468 331 11 2 1 330 1 328 0.0 645
MS.gene074587.t1 MTR_2g016140 59.804 102 37 2 66 166 19 117 1.30e-35 133
MS.gene074587.t1 MTR_2g016140 53.030 66 28 1 265 330 236 298 1.06e-14 74.7
MS.gene074587.t1 MTR_2g016140 59.804 102 37 2 66 166 19 117 1.67e-35 133
MS.gene074587.t1 MTR_2g016140 53.030 66 28 1 265 330 236 298 1.57e-14 74.3
MS.gene074587.t1 MTR_4g079960 57.391 115 35 4 65 171 26 134 1.11e-33 127
MS.gene074587.t1 MTR_4g079960 57.391 115 35 4 65 171 26 134 1.99e-33 127
MS.gene074587.t1 MTR_4g079960 57.391 115 35 4 65 171 26 134 2.40e-33 127
MS.gene074587.t1 MTR_2g102227 30.418 263 131 8 70 330 274 486 4.38e-22 98.2
MS.gene074587.t1 MTR_2g092960 38.261 115 63 3 61 171 37 147 3.36e-17 84.3
MS.gene074587.t1 MTR_3g014280 26.299 308 162 12 54 330 21 294 5.26e-17 81.6
MS.gene074587.t1 MTR_6g486270 36.000 100 59 2 70 169 130 224 2.37e-16 80.1
MS.gene074587.t1 MTR_1g037650 36.066 122 68 2 54 174 21 133 7.98e-15 72.8
MS.gene074587.t1 MTR_1g061600 34.375 96 57 2 70 165 133 222 1.09e-14 75.9
MS.gene074587.t1 MTR_4g117990 32.632 95 62 1 69 163 43 135 5.34e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074587.t1 AT3G14180 47.656 384 109 11 34 330 24 402 1.94e-90 280
MS.gene074587.t1 AT1G54060 41.444 374 146 13 1 330 1 345 2.97e-54 184
MS.gene074587.t1 AT5G05550 39.552 268 102 7 65 330 19 228 1.87e-43 152
MS.gene074587.t1 AT5G05550 39.552 268 102 7 65 330 19 228 2.67e-43 151
MS.gene074587.t1 AT5G05550 39.552 268 102 7 65 330 19 228 3.06e-43 151
MS.gene074587.t1 AT3G58630 37.143 280 146 8 66 329 22 287 4.03e-43 153
MS.gene074587.t1 AT3G58630 37.143 280 146 8 66 329 22 287 5.36e-43 153
MS.gene074587.t1 AT3G11100 41.852 270 98 7 65 330 17 231 7.27e-43 150
MS.gene074587.t1 AT3G10030 36.283 113 66 2 70 182 161 267 8.01e-18 85.5
MS.gene074587.t1 AT3G10030 36.283 113 66 2 70 182 161 267 9.73e-18 85.5
MS.gene074587.t1 AT3G24490 33.846 130 76 4 70 197 90 211 7.16e-17 81.3
MS.gene074587.t1 AT3G54390 40.404 99 50 2 66 164 34 123 2.27e-16 79.3
MS.gene074587.t1 AT3G54390 40.404 99 50 2 66 164 50 139 2.61e-16 79.3
MS.gene074587.t1 AT2G44730 32.632 95 62 1 69 163 63 155 5.50e-12 67.0
MS.gene074587.t1 AT3G24860 28.800 125 67 3 39 163 45 147 1.07e-11 65.9

Find 111 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAGGTACGGCTGCAGTTT+GGG 0.185680 8.1:-77871062 None:intergenic
ACTCAGGCAATTGTGAAATT+TGG 0.238839 8.1:+77869698 MS.gene074587:CDS
ATAGCTATGGGACTGAATTT+TGG 0.267179 8.1:-77870981 None:intergenic
GATGAAGTTTGCTAAGGATT+TGG 0.272524 8.1:+77869784 MS.gene074587:CDS
GATCGGTTAGATCAGTTAAT+TGG 0.279898 8.1:+77869326 MS.gene074587:CDS
GCCAAGATTAGTGGTGTTTC+CGG 0.285327 8.1:+77869356 MS.gene074587:CDS
CTGTGACAAATGACTGTTTC+CGG 0.295901 8.1:-77869390 None:intergenic
AGGCAGGTACGGCTGCAGTT+TGG 0.318815 8.1:-77871063 None:intergenic
TTCGGTGACGGTTGCGGCAC+CGG 0.338241 8.1:+77868962 MS.gene074587:CDS
TCCATCTCCGGTGTCGTCTC+CGG 0.352746 8.1:+77868923 MS.gene074587:CDS
AAATTCGAAGGGGAGAGGTT+GGG 0.373866 8.1:+77869655 MS.gene074587:CDS
CCTGTTGGTATTCGCGCCTC+TGG 0.397120 8.1:+77869434 MS.gene074587:CDS
GTTTCACGTCCCAGCGGTGC+TGG 0.399693 8.1:-77871150 None:intergenic
GTGGAGGGAGGGAGGATTGT+TGG 0.405449 8.1:+77869042 MS.gene074587:CDS
CCATCTCCGGTGTCGTCTCC+GGG 0.410853 8.1:+77868924 MS.gene074587:CDS
AGCGTGGGGAGAGAGGTATT+TGG 0.415050 8.1:+77869094 MS.gene074587:CDS
AAAACAGCCGCAACAGCTGC+TGG 0.415089 8.1:+77871087 MS.gene074587:CDS
AATTCGAAGGGGAGAGGTTG+GGG 0.424508 8.1:+77869656 MS.gene074587:CDS
GGGAGCGATCGGTAGGATTT+CGG 0.429065 8.1:+77868944 MS.gene074587:CDS
ATCGGTGCTGGAGGTGGCTC+CGG 0.432598 8.1:+77869272 MS.gene074587:CDS
ACCGGAAACACCACTAATCT+TGG 0.441082 8.1:-77869357 None:intergenic
GGCGGTGTTGATTGAAGCGT+GGG 0.449332 8.1:+77869079 MS.gene074587:CDS
AATGCATAGCTGTTCGCCGC+CGG 0.453869 8.1:-77868981 None:intergenic
GAGGTTGGGGAAGTGCGGTG+AGG 0.461820 8.1:+77869669 MS.gene074587:CDS
GAGGTTGCAGAGATTGTGAA+TGG 0.465126 8.1:+77869155 MS.gene074587:CDS
AGGTTGGGGAAGTGCGGTGA+GGG 0.465619 8.1:+77869670 MS.gene074587:CDS
ATCATAAAACCGCCAAGTGC+TGG 0.468333 8.1:-77869306 None:intergenic
TAGGATTTCGGTGACGGTTG+CGG 0.476805 8.1:+77868956 MS.gene074587:CDS
GTCGAAGTTGCAGCAGGTGG+TGG 0.476922 8.1:+77869745 MS.gene074587:CDS
CAAATTCGAAGGGGAGAGGT+TGG 0.478124 8.1:+77869654 MS.gene074587:CDS
GGTTAAGAAGAAATATAAAT+CGG 0.478477 8.1:+77869238 MS.gene074587:CDS
CTGATATTCAGTGTAAGAAT+CGG 0.482219 8.1:+77869207 MS.gene074587:CDS
GGTCCAGCTGCCAAGATTAG+TGG 0.484802 8.1:+77869347 MS.gene074587:CDS
CCAGAGGCGCGAATACCAAC+AGG 0.485804 8.1:-77869434 None:intergenic
GGCGAGTGGTTCTCCATCTC+CGG 0.489845 8.1:+77868911 MS.gene074587:CDS
GGAATTTGAAGCAGAAGCAT+TGG 0.493242 8.1:+77869129 MS.gene074587:CDS
GCTCTCTTCCTCTCCGGTGG+TGG 0.494319 8.1:-77869617 None:intergenic
GTTGCAGCAGGTGGTGGAGA+TGG 0.496264 8.1:+77869751 MS.gene074587:CDS
GAGAAAGCTAAGATCGGTGC+TGG 0.500736 8.1:+77869260 MS.gene074587:CDS
ATGACTGTTTCCGGTATGAC+TGG 0.507321 8.1:-77869381 None:intergenic
CCACGTGTCGTATTCTGAAT+CGG 0.509196 8.1:-77869011 None:intergenic
GCTAAGATCGGTGCTGGAGG+TGG 0.509682 8.1:+77869266 MS.gene074587:CDS
ACTTTCGCTCTCTTCCTCTC+CGG 0.511815 8.1:-77869623 None:intergenic
TGGAAGCAACGGTGGAGGGA+GGG 0.519025 8.1:+77869031 MS.gene074587:CDS
GTGTCGTCTCCGGGAGCGAT+CGG 0.520173 8.1:+77868933 MS.gene074587:CDS
GGTATTTGGAATTGAGCAGA+GGG 0.520971 8.1:+77869108 MS.gene074587:CDS
GATCGGTAGGATTTCGGTGA+CGG 0.523152 8.1:+77868950 MS.gene074587:CDS
GGAGAACCACTCGCCGGAGA+TGG 0.523745 8.1:-77868903 None:intergenic
AGTGATGAATTCAAATTCGA+AGG 0.523808 8.1:+77869643 MS.gene074587:CDS
GAAGCAGAAGCATTGGAAAG+AGG 0.525294 8.1:+77869136 MS.gene074587:CDS
AATTCAAATTCGAAGGGGAG+AGG 0.527517 8.1:+77869650 MS.gene074587:CDS
CCCGGAGACGACACCGGAGA+TGG 0.529470 8.1:-77868924 None:intergenic
TCACAGCAGAAAGTTCCGTT+AGG 0.530119 8.1:+77869407 MS.gene074587:CDS
GCAGAGGATGAAGTTTGCTA+AGG 0.530659 8.1:+77869778 MS.gene074587:CDS
GTGATGAATTCAAATTCGAA+GGG 0.535513 8.1:+77869644 MS.gene074587:CDS
ACACCACTAATCTTGGCAGC+TGG 0.541940 8.1:-77869350 None:intergenic
GAAATCCTACCGATCGCTCC+CGG 0.544759 8.1:-77868942 None:intergenic
GGATGCTTGAGGCATAGCTA+TGG 0.545553 8.1:-77870994 None:intergenic
GTGGAAGCAACGGTGGAGGG+AGG 0.547610 8.1:+77869030 MS.gene074587:CDS
CACGTGGAAGCAACGGTGGA+GGG 0.548507 8.1:+77869027 MS.gene074587:CDS
GTGTAAGAATCGGATTGATA+CGG 0.548630 8.1:+77869217 MS.gene074587:CDS
TTCGCTCTCTTCCTCTCCGG+TGG 0.556083 8.1:-77869620 None:intergenic
GGAGACGTCGAAGTTGCAGC+AGG 0.559673 8.1:+77869739 MS.gene074587:CDS
TGCGGTGAGGGAATTGACTC+AGG 0.559802 8.1:+77869682 MS.gene074587:CDS
GCAGGTACGGCTGCAGTTTG+GGG 0.560060 8.1:-77871061 None:intergenic
TGATAGTCCAGCAGCTGTTG+CGG 0.560612 8.1:-77871094 None:intergenic
AATACGACACGTGGAAGCAA+CGG 0.563694 8.1:+77869020 MS.gene074587:CDS
GCAGAGATTGTGAATGGAAG+AGG 0.564142 8.1:+77869161 MS.gene074587:CDS
AGGTATTTGGAATTGAGCAG+AGG 0.565655 8.1:+77869107 MS.gene074587:CDS
TGGTGGAGATGGAGAAGCAG+AGG 0.566345 8.1:+77869762 MS.gene074587:CDS
TGATTGAAGCGTGGGGAGAG+AGG 0.567107 8.1:+77869087 MS.gene074587:CDS
GGGGAGAGGTTGGGGAAGTG+CGG 0.570094 8.1:+77869664 MS.gene074587:CDS
GTGTTACAACCAGCACTTGG+CGG 0.570584 8.1:+77869297 MS.gene074587:CDS
CGGCGGTGTTGATTGAAGCG+TGG 0.570892 8.1:+77869078 MS.gene074587:CDS
GTTTCCGGTATGACTGGTAC+CGG 0.572913 8.1:-77869375 None:intergenic
GACGTCGAAGTTGCAGCAGG+TGG 0.576057 8.1:+77869742 MS.gene074587:CDS
ACACGTGGAAGCAACGGTGG+AGG 0.578608 8.1:+77869026 MS.gene074587:CDS
GTTTCCGGTACCAGTCATAC+CGG 0.579315 8.1:+77869371 MS.gene074587:CDS
ATCGCTCCCGGAGACGACAC+CGG 0.585960 8.1:-77868930 None:intergenic
GCTATTGCTTGGGATGCTTG+AGG 0.588655 8.1:-77871005 None:intergenic
AGTGCTGGTTGTAACACCGC+CGG 0.591035 8.1:-77869291 None:intergenic
GCGGTGTTACAACCAGCACT+TGG 0.592137 8.1:+77869294 MS.gene074587:CDS
TTGTTGGAGCGAAGCAGCGA+CGG 0.593492 8.1:+77869058 MS.gene074587:CDS
AAGCGACAGTTTACCACCAC+CGG 0.595248 8.1:+77869604 MS.gene074587:CDS
AAGCAACGGTGGAGGGAGGG+AGG 0.596019 8.1:+77869034 MS.gene074587:CDS
GATCCACTCGAATCCATCTC+CGG 0.596077 8.1:+77868890 MS.gene074587:CDS
GATGCTTGAGGCATAGCTAT+GGG 0.599077 8.1:-77870993 None:intergenic
CGTCTCCGGGAGCGATCGGT+AGG 0.601980 8.1:+77868937 MS.gene074587:CDS
GGTGCTGGAGGTGGCTCCGG+CGG 0.604719 8.1:+77869275 MS.gene074587:CDS
ATTCGCGCCTCTGGAGCTAG+AGG 0.614912 8.1:+77869443 MS.gene074587:CDS
TGGTGAAGCTTATGAACAAG+CGG 0.615901 8.1:+77869718 MS.gene074587:CDS
TCGAATCCATCTCCGGCGAG+TGG 0.616080 8.1:+77868897 MS.gene074587:CDS
AAATCGGAGAAAGCTAAGAT+CGG 0.619321 8.1:+77869254 MS.gene074587:CDS
GGTGACGGTTGCGGCACCGG+CGG 0.620431 8.1:+77868965 MS.gene074587:CDS
GTTCCGTTAGGAATTCCTGT+TGG 0.621548 8.1:+77869419 MS.gene074587:CDS
TTGGAGCGAAGCAGCGACGG+CGG 0.631965 8.1:+77869061 MS.gene074587:CDS
AAAGCTAAGATCGGTGCTGG+AGG 0.634146 8.1:+77869263 MS.gene074587:CDS
GGAGATGGAGAACCACTCGC+CGG 0.634434 8.1:-77868909 None:intergenic
GGTAAACTGTCGCTTGACAC+CGG 0.634602 8.1:-77869596 None:intergenic
ATTCGCGCCTCTAGCTCCAG+AGG 0.645061 8.1:-77869450 None:intergenic
CTGCCTGTTTCACGTCCCAG+CGG 0.645719 8.1:-77871156 None:intergenic
ACGACACGTGGAAGCAACGG+TGG 0.649070 8.1:+77869023 MS.gene074587:CDS
CCGATTCAGAATACGACACG+TGG 0.663489 8.1:+77869011 MS.gene074587:CDS
ATACCAACAGGAATTCCTAA+CGG 0.670478 8.1:-77869422 None:intergenic
TCGCCGGAGATGGATTCGAG+TGG 0.676446 8.1:-77868893 None:intergenic
ACAGTTTACCACCACCGGAG+AGG 0.677094 8.1:+77869609 MS.gene074587:CDS
TGATGAATTCAAATTCGAAG+GGG 0.682099 8.1:+77869645 MS.gene074587:CDS
TGACGACGACGAGATCCACT+CGG 0.685256 8.1:+77868860 MS.gene074587:CDS
GAATTCAGCTCAGAAACGCG+TGG 0.694751 8.1:-77869539 None:intergenic
GCGGTGTTGATTGAAGCGTG+GGG 0.735042 8.1:+77869080 MS.gene074587:CDS
AGTGGATCGAGTTAACCGAG+TGG 0.771483 8.1:-77868875 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAGAGA+TGG - chr8.1:77870758-77870777 None:intergenic 10.0%
!!! TTTTTTTTAATTATTCTCTT+TGG - chr8.1:77870098-77870117 None:intergenic 10.0%
!! ATATTAAGATAAATTATTCC+TGG + chr8.1:77870530-77870549 MS.gene074587:intron 15.0%
!! TATTACATTTATGTACATTA+TGG + chr8.1:77870582-77870601 MS.gene074587:intron 15.0%
!! AACTTGATTGTAGATATAAA+AGG + chr8.1:77870456-77870475 MS.gene074587:intron 20.0%
!! GAAGGAAAAAAAAAGATAAA+GGG + chr8.1:77870492-77870511 MS.gene074587:intron 20.0%
!! GGTTAAGAAGAAATATAAAT+CGG + chr8.1:77869238-77869257 MS.gene074587:CDS 20.0%
!!! AATTGTTATTATCAGTGTTA+AGG + chr8.1:77870197-77870216 MS.gene074587:intron 20.0%
!!! AGAAAAAGTGTTAATGTTAA+TGG + chr8.1:77869869-77869888 MS.gene074587:intron 20.0%
! AATCCATCAAAATAGCATTT+AGG - chr8.1:77870391-77870410 None:intergenic 25.0%
! AATTGTTGTAGTTAACTTAG+AGG + chr8.1:77870062-77870081 MS.gene074587:intron 25.0%
! ATTGTTGTAGTTAACTTAGA+GGG + chr8.1:77870063-77870082 MS.gene074587:intron 25.0%
! CGAAGGAAAAAAAAAGATAA+AGG + chr8.1:77870491-77870510 MS.gene074587:intron 25.0%
! CTGATAATAACAATTCAGAA+TGG - chr8.1:77870192-77870211 None:intergenic 25.0%
! GTGTATGTGTTTAGTTATTA+TGG + chr8.1:77870022-77870041 MS.gene074587:intron 25.0%
!! TTACACTGAATATCAGTTTT+CGG - chr8.1:77869203-77869222 None:intergenic 25.0%
!!! TAACCTAAATGCTATTTTGA+TGG + chr8.1:77870385-77870404 MS.gene074587:intron 25.0%
AGGATCATATCTTTGTTGAT+AGG + chr8.1:77870217-77870236 MS.gene074587:intron 30.0%
AGTGATGAATTCAAATTCGA+AGG + chr8.1:77869643-77869662 MS.gene074587:CDS 30.0%
CTGATATTCAGTGTAAGAAT+CGG + chr8.1:77869207-77869226 MS.gene074587:CDS 30.0%
GTGATGAATTCAAATTCGAA+GGG + chr8.1:77869644-77869663 MS.gene074587:CDS 30.0%
TCGAATTTGACCATTCAAAA+AGG - chr8.1:77870428-77870447 None:intergenic 30.0%
TGATGAATTCAAATTCGAAG+GGG + chr8.1:77869645-77869664 MS.gene074587:CDS 30.0%
! GTACACTTTACCTTTTTGAA+TGG + chr8.1:77870415-77870434 MS.gene074587:intron 30.0%
! TGATGTTTAGGTTTAAGGTT+AGG + chr8.1:77869981-77870000 MS.gene074587:intron 30.0%
AAAGGATTGATTGAACACGA+AGG + chr8.1:77870474-77870493 MS.gene074587:intron 35.0%
AAATCGGAGAAAGCTAAGAT+CGG + chr8.1:77869254-77869273 MS.gene074587:CDS 35.0%
AAGTTCCAAAACGAGAAGAA+CGG + chr8.1:77870878-77870897 MS.gene074587:intron 35.0%
ACTCAGGCAATTGTGAAATT+TGG + chr8.1:77869698-77869717 MS.gene074587:CDS 35.0%
ATACCAACAGGAATTCCTAA+CGG - chr8.1:77869425-77869444 None:intergenic 35.0%
ATGCAGAAGAATCATTCTCA+GGG + chr8.1:77870632-77870651 MS.gene074587:intron 35.0%
CACTGTCACTGTTATTGTTA+TGG - chr8.1:77869955-77869974 None:intergenic 35.0%
CGGTGACAGATAAAATTACA+AGG + chr8.1:77870828-77870847 MS.gene074587:intron 35.0%
GAGATTTCACAGTTGAAACT+TGG + chr8.1:77869845-77869864 MS.gene074587:intron 35.0%
GATCGGTTAGATCAGTTAAT+TGG + chr8.1:77869326-77869345 MS.gene074587:CDS 35.0%
GTACTTATGTATCCTTACAG+AGG + chr8.1:77870708-77870727 MS.gene074587:intron 35.0%
GTGTAAGAATCGGATTGATA+CGG + chr8.1:77869217-77869236 MS.gene074587:CDS 35.0%
TTAAAACACAAAATTGCGCC+AGG - chr8.1:77870551-77870570 None:intergenic 35.0%
TTATGTATCCTTACAGAGGA+GGG + chr8.1:77870712-77870731 MS.gene074587:intron 35.0%
! AGTCATAGCTTAAGCCATTT+TGG - chr8.1:77870941-77870960 None:intergenic 35.0%
! ATAGCTATGGGACTGAATTT+TGG - chr8.1:77870984-77871003 None:intergenic 35.0%
! GCAGTTTTTCATGAAAACTC+AGG + chr8.1:77869820-77869839 MS.gene074587:CDS 35.0%
! GTGAGTGATGTTTAGGTTTA+AGG + chr8.1:77869976-77869995 MS.gene074587:intron 35.0%
!! GATGAAGTTTGCTAAGGATT+TGG + chr8.1:77869784-77869803 MS.gene074587:CDS 35.0%
!! TATGACTCTGAAATCTAGTG+TGG + chr8.1:77870954-77870973 MS.gene074587:intron 35.0%
!!! TTCTTCTCGTTTTGGAACTT+GGG - chr8.1:77870878-77870897 None:intergenic 35.0%
AATTCAAATTCGAAGGGGAG+AGG + chr8.1:77869650-77869669 MS.gene074587:CDS 40.0%
ACAGTGAGTGAGTGATGTTT+AGG + chr8.1:77869969-77869988 MS.gene074587:intron 40.0%
CTGTGACAAATGACTGTTTC+CGG - chr8.1:77869393-77869412 None:intergenic 40.0%
CTTATGTATCCTTACAGAGG+AGG + chr8.1:77870711-77870730 MS.gene074587:intron 40.0%
GATGCAGAAGAATCATTCTC+AGG + chr8.1:77870631-77870650 MS.gene074587:intron 40.0%
TACAATATCCCTCCTCTGTA+AGG - chr8.1:77870723-77870742 None:intergenic 40.0%
TACCAAGAACCACTCCAAAA+TGG + chr8.1:77870924-77870943 MS.gene074587:intron 40.0%
TCTCGCAAGACGATAAGAAA+CGG + chr8.1:77870808-77870827 MS.gene074587:intron 40.0%
TGCAGAAGAATCATTCTCAG+GGG + chr8.1:77870633-77870652 MS.gene074587:intron 40.0%
TGGTGAAGCTTATGAACAAG+CGG + chr8.1:77869718-77869737 MS.gene074587:CDS 40.0%
TTATCGTCTTGCGAGAGTTT+CGG - chr8.1:77870804-77870823 None:intergenic 40.0%
! AGGTATTTGGAATTGAGCAG+AGG + chr8.1:77869107-77869126 MS.gene074587:CDS 40.0%
! ATTACAAGGATGCCGCTTAT+AGG + chr8.1:77870842-77870861 MS.gene074587:intron 40.0%
! GCTATTGTTGTTGTTGTTGC+TGG - chr8.1:77869930-77869949 None:intergenic 40.0%
! GGAATTTGAAGCAGAAGCAT+TGG + chr8.1:77869129-77869148 MS.gene074587:CDS 40.0%
! GGTATTTGGAATTGAGCAGA+GGG + chr8.1:77869108-77869127 MS.gene074587:CDS 40.0%
!! GAGTGGTTCTTGGTAGTTTT+TGG - chr8.1:77870919-77870938 None:intergenic 40.0%
!! TAGCTTAAGCCATTTTGGAG+TGG - chr8.1:77870936-77870955 None:intergenic 40.0%
!! TGAAAAAGAAGCGTTGTCAC+CGG + chr8.1:77869577-77869596 MS.gene074587:CDS 40.0%
!!! GGGTGTTTTTTCCTTATCCT+CGG - chr8.1:77871044-77871063 None:intergenic 40.0%
!!! GTTCTTCTCGTTTTGGAACT+TGG - chr8.1:77870879-77870898 None:intergenic 40.0%
!!! GTTTTTGGTGGCTATTGCTT+GGG - chr8.1:77871018-77871037 None:intergenic 40.0%
!!! GTTTTTTCCTTATCCTCGGT+CGG - chr8.1:77871040-77871059 None:intergenic 40.0%
AAATTCGAAGGGGAGAGGTT+GGG + chr8.1:77869655-77869674 MS.gene074587:CDS 45.0%
AATACGACACGTGGAAGCAA+CGG + chr8.1:77869020-77869039 MS.gene074587:CDS 45.0%
ACCGGAAACACCACTAATCT+TGG - chr8.1:77869360-77869379 None:intergenic 45.0%
ATCATAAAACCGCCAAGTGC+TGG - chr8.1:77869309-77869328 None:intergenic 45.0%
ATGACTGTTTCCGGTATGAC+TGG - chr8.1:77869384-77869403 None:intergenic 45.0%
CAGAAGAATCATTCTCAGGG+GGG + chr8.1:77870635-77870654 MS.gene074587:intron 45.0%
CCACGTGTCGTATTCTGAAT+CGG - chr8.1:77869014-77869033 None:intergenic 45.0%
GAGGTTGCAGAGATTGTGAA+TGG + chr8.1:77869155-77869174 MS.gene074587:CDS 45.0%
GATGCTTGAGGCATAGCTAT+GGG - chr8.1:77870996-77871015 None:intergenic 45.0%
GCAGAAGAATCATTCTCAGG+GGG + chr8.1:77870634-77870653 MS.gene074587:intron 45.0%
GCAGAGATTGTGAATGGAAG+AGG + chr8.1:77869161-77869180 MS.gene074587:CDS 45.0%
GCCAAGATTAGTGGTGTTTC+CGG + chr8.1:77869356-77869375 MS.gene074587:CDS 45.0%
GTTCCGTTAGGAATTCCTGT+TGG + chr8.1:77869419-77869438 MS.gene074587:CDS 45.0%
TCACAGCAGAAAGTTCCGTT+AGG + chr8.1:77869407-77869426 MS.gene074587:CDS 45.0%
TCTCAGGGGGGATTGAATTA+GGG + chr8.1:77870647-77870666 MS.gene074587:intron 45.0%
TTCCAAAACGAGAAGAACGG+TGG + chr8.1:77870881-77870900 MS.gene074587:intron 45.0%
TTCTCAGGGGGGATTGAATT+AGG + chr8.1:77870646-77870665 MS.gene074587:intron 45.0%
! GCTATGGGACTGAATTTTGG+TGG - chr8.1:77870981-77871000 None:intergenic 45.0%
! GGCGATTTTACGCCTATAAG+CGG - chr8.1:77870857-77870876 None:intergenic 45.0%
! TTCCACCGTTCTTCTCGTTT+TGG - chr8.1:77870886-77870905 None:intergenic 45.0%
!! GAAGCAGAAGCATTGGAAAG+AGG + chr8.1:77869136-77869155 MS.gene074587:CDS 45.0%
!! GCACTTGGCGGTTTTATGAT+CGG + chr8.1:77869309-77869328 MS.gene074587:CDS 45.0%
!! GCAGAGGATGAAGTTTGCTA+AGG + chr8.1:77869778-77869797 MS.gene074587:CDS 45.0%
!!! AGCCATTTTGGAGTGGTTCT+TGG - chr8.1:77870929-77870948 None:intergenic 45.0%
!!! GGTTTTTGGTGGCTATTGCT+TGG - chr8.1:77871019-77871038 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTGAAT+TGG + chr8.1:77870764-77870783 MS.gene074587:intron 5.0%
AAGCGACAGTTTACCACCAC+CGG + chr8.1:77869604-77869623 MS.gene074587:CDS 50.0%
AATTCGAAGGGGAGAGGTTG+GGG + chr8.1:77869656-77869675 MS.gene074587:CDS 50.0%
ACACCACTAATCTTGGCAGC+TGG - chr8.1:77869353-77869372 None:intergenic 50.0%
ACAGAAAAACCAGCACCGCT+GGG + chr8.1:77871141-77871160 MS.gene074587:CDS 50.0%
ACTTTCGCTCTCTTCCTCTC+CGG - chr8.1:77869626-77869645 None:intergenic 50.0%
AGTGGATCGAGTTAACCGAG+TGG - chr8.1:77868878-77868897 None:intergenic 50.0%
CAAATTCGAAGGGGAGAGGT+TGG + chr8.1:77869654-77869673 MS.gene074587:CDS 50.0%
CCAAAAACCGACCGAGGATA+AGG + chr8.1:77871030-77871049 MS.gene074587:CDS 50.0%
CCGATTCAGAATACGACACG+TGG + chr8.1:77869011-77869030 MS.gene074587:CDS 50.0%
GAATTCAGCTCAGAAACGCG+TGG - chr8.1:77869542-77869561 None:intergenic 50.0%
GAGAAAGCTAAGATCGGTGC+TGG + chr8.1:77869260-77869279 MS.gene074587:CDS 50.0%
GATCCACTCGAATCCATCTC+CGG + chr8.1:77868890-77868909 MS.gene074587:CDS 50.0%
GATCGGTAGGATTTCGGTGA+CGG + chr8.1:77868950-77868969 MS.gene074587:CDS 50.0%
GCTATTGCTTGGGATGCTTG+AGG - chr8.1:77871008-77871027 None:intergenic 50.0%
GGATGCTTGAGGCATAGCTA+TGG - chr8.1:77870997-77871016 None:intergenic 50.0%
GTGTTACAACCAGCACTTGG+CGG + chr8.1:77869297-77869316 MS.gene074587:CDS 50.0%
GTTTCCGGTACCAGTCATAC+CGG + chr8.1:77869371-77869390 MS.gene074587:CDS 50.0%
GTTTCCGGTATGACTGGTAC+CGG - chr8.1:77869378-77869397 None:intergenic 50.0%
TGATAGTCCAGCAGCTGTTG+CGG - chr8.1:77871097-77871116 None:intergenic 50.0%
! GGTAAACTGTCGCTTGACAC+CGG - chr8.1:77869599-77869618 None:intergenic 50.0%
! TAGGATTTCGGTGACGGTTG+CGG + chr8.1:77868956-77868975 MS.gene074587:CDS 50.0%
!! AAAGCTAAGATCGGTGCTGG+AGG + chr8.1:77869263-77869282 MS.gene074587:CDS 50.0%
!! CCTTATCCTCGGTCGGTTTT+TGG - chr8.1:77871033-77871052 None:intergenic 50.0%
!! TATCCTCGGTCGGTTTTTGG+TGG - chr8.1:77871030-77871049 None:intergenic 50.0%
AAAACAGCCGCAACAGCTGC+TGG + chr8.1:77871087-77871106 MS.gene074587:CDS 55.0%
AATGCATAGCTGTTCGCCGC+CGG - chr8.1:77868984-77869003 None:intergenic 55.0%
ACAGTTTACCACCACCGGAG+AGG + chr8.1:77869609-77869628 MS.gene074587:CDS 55.0%
CACAGAAAAACCAGCACCGC+TGG + chr8.1:77871140-77871159 MS.gene074587:CDS 55.0%
GAAATCCTACCGATCGCTCC+CGG - chr8.1:77868945-77868964 None:intergenic 55.0%
GGGAGCGATCGGTAGGATTT+CGG + chr8.1:77868944-77868963 MS.gene074587:CDS 55.0%
GGTCCAGCTGCCAAGATTAG+TGG + chr8.1:77869347-77869366 MS.gene074587:CDS 55.0%
TAGCCACCAAAAACCGACCG+AGG + chr8.1:77871024-77871043 MS.gene074587:CDS 55.0%
TGACGACGACGAGATCCACT+CGG + chr8.1:77868860-77868879 MS.gene074587:CDS 55.0%
TGATTGAAGCGTGGGGAGAG+AGG + chr8.1:77869087-77869106 MS.gene074587:CDS 55.0%
TGGTGGAGATGGAGAAGCAG+AGG + chr8.1:77869762-77869781 MS.gene074587:CDS 55.0%
TTGTTGGAGCGAAGCAGCGA+CGG + chr8.1:77869058-77869077 MS.gene074587:CDS 55.0%
! TGCGGTGAGGGAATTGACTC+AGG + chr8.1:77869682-77869701 MS.gene074587:CDS 55.0%
!! AGCGTGGGGAGAGAGGTATT+TGG + chr8.1:77869094-77869113 MS.gene074587:CDS 55.0%
!! AGTGCTGGTTGTAACACCGC+CGG - chr8.1:77869294-77869313 None:intergenic 55.0%
!! CAGCTGTTGCGGCTGTTTTC+AGG - chr8.1:77871086-77871105 None:intergenic 55.0%
!! CGGCTGTTTTCAGGCAGGTA+CGG - chr8.1:77871077-77871096 None:intergenic 55.0%
!! GCGGTGTTACAACCAGCACT+TGG + chr8.1:77869294-77869313 MS.gene074587:CDS 55.0%
!! GCGGTGTTGATTGAAGCGTG+GGG + chr8.1:77869080-77869099 MS.gene074587:CDS 55.0%
!! GGCGGTGTTGATTGAAGCGT+GGG + chr8.1:77869079-77869098 MS.gene074587:CDS 55.0%
!! TGTTGCGGCTGTTTTCAGGC+AGG - chr8.1:77871082-77871101 None:intergenic 55.0%
!!! CAGCGGTGCTGGTTTTTCTG+TGG - chr8.1:77871142-77871161 None:intergenic 55.0%
ACACGTGGAAGCAACGGTGG+AGG + chr8.1:77869026-77869045 MS.gene074587:CDS 60.0%
ACGACACGTGGAAGCAACGG+TGG + chr8.1:77869023-77869042 MS.gene074587:CDS 60.0%
AGGCAGGTACGGCTGCAGTT+TGG - chr8.1:77871066-77871085 None:intergenic 60.0%
CACGTGGAAGCAACGGTGGA+GGG + chr8.1:77869027-77869046 MS.gene074587:CDS 60.0%
CCTGTTGGTATTCGCGCCTC+TGG + chr8.1:77869434-77869453 MS.gene074587:CDS 60.0%
GACGTCGAAGTTGCAGCAGG+TGG + chr8.1:77869742-77869761 MS.gene074587:CDS 60.0%
GCAGGTACGGCTGCAGTTTG+GGG - chr8.1:77871064-77871083 None:intergenic 60.0%
GGAGACGTCGAAGTTGCAGC+AGG + chr8.1:77869739-77869758 MS.gene074587:CDS 60.0%
GGAGATGGAGAACCACTCGC+CGG - chr8.1:77868912-77868931 None:intergenic 60.0%
GGCAGGTACGGCTGCAGTTT+GGG - chr8.1:77871065-77871084 None:intergenic 60.0%
GGCGAGTGGTTCTCCATCTC+CGG + chr8.1:77868911-77868930 MS.gene074587:CDS 60.0%
GTCGAAGTTGCAGCAGGTGG+TGG + chr8.1:77869745-77869764 MS.gene074587:CDS 60.0%
GTGGAGGGAGGGAGGATTGT+TGG + chr8.1:77869042-77869061 MS.gene074587:CDS 60.0%
TCGAATCCATCTCCGGCGAG+TGG + chr8.1:77868897-77868916 MS.gene074587:CDS 60.0%
TGGAAGCAACGGTGGAGGGA+GGG + chr8.1:77869031-77869050 MS.gene074587:CDS 60.0%
TTCGCTCTCTTCCTCTCCGG+TGG - chr8.1:77869623-77869642 None:intergenic 60.0%
! AGGTTGGGGAAGTGCGGTGA+GGG + chr8.1:77869670-77869689 MS.gene074587:CDS 60.0%
! ATTCGCGCCTCTAGCTCCAG+AGG - chr8.1:77869453-77869472 None:intergenic 60.0%
! CCAGAGGCGCGAATACCAAC+AGG - chr8.1:77869437-77869456 None:intergenic 60.0%
! TCGCCGGAGATGGATTCGAG+TGG - chr8.1:77868896-77868915 None:intergenic 60.0%
!! ATTCGCGCCTCTGGAGCTAG+AGG + chr8.1:77869443-77869462 MS.gene074587:CDS 60.0%
!! CGGCGGTGTTGATTGAAGCG+TGG + chr8.1:77869078-77869097 MS.gene074587:CDS 60.0%
!! GCTAAGATCGGTGCTGGAGG+TGG + chr8.1:77869266-77869285 MS.gene074587:CDS 60.0%
!! GTTGCAGCAGGTGGTGGAGA+TGG + chr8.1:77869751-77869770 MS.gene074587:CDS 60.0%
!! TCCATCTCCGGTGTCGTCTC+CGG + chr8.1:77868923-77868942 MS.gene074587:CDS 60.0%
AAGCAACGGTGGAGGGAGGG+AGG + chr8.1:77869034-77869053 MS.gene074587:CDS 65.0%
ATCGCTCCCGGAGACGACAC+CGG - chr8.1:77868933-77868952 None:intergenic 65.0%
GCTCTCTTCCTCTCCGGTGG+TGG - chr8.1:77869620-77869639 None:intergenic 65.0%
GGAGAACCACTCGCCGGAGA+TGG - chr8.1:77868906-77868925 None:intergenic 65.0%
GGGGAGAGGTTGGGGAAGTG+CGG + chr8.1:77869664-77869683 MS.gene074587:CDS 65.0%
GTGGAAGCAACGGTGGAGGG+AGG + chr8.1:77869030-77869049 MS.gene074587:CDS 65.0%
GTGTCGTCTCCGGGAGCGAT+CGG + chr8.1:77868933-77868952 MS.gene074587:CDS 65.0%
TTGGAGCGAAGCAGCGACGG+CGG + chr8.1:77869061-77869080 MS.gene074587:CDS 65.0%
! GAGGTTGGGGAAGTGCGGTG+AGG + chr8.1:77869669-77869688 MS.gene074587:CDS 65.0%
! TTCGGTGACGGTTGCGGCAC+CGG + chr8.1:77868962-77868981 MS.gene074587:CDS 65.0%
!! ATCGGTGCTGGAGGTGGCTC+CGG + chr8.1:77869272-77869291 MS.gene074587:CDS 65.0%
!! CCATCTCCGGTGTCGTCTCC+GGG + chr8.1:77868924-77868943 MS.gene074587:CDS 65.0%
CCCGGAGACGACACCGGAGA+TGG - chr8.1:77868927-77868946 None:intergenic 70.0%
CGTCTCCGGGAGCGATCGGT+AGG + chr8.1:77868937-77868956 MS.gene074587:CDS 70.0%
! GGTGACGGTTGCGGCACCGG+CGG + chr8.1:77868965-77868984 MS.gene074587:CDS 75.0%
! GGTGCTGGAGGTGGCTCCGG+CGG + chr8.1:77869275-77869294 MS.gene074587:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 77868855 77871169 77868855 ID=MS.gene074587
chr8.1 mRNA 77868855 77871169 77868855 ID=MS.gene074587.t1;Parent=MS.gene074587
chr8.1 exon 77868855 77869841 77868855 ID=MS.gene074587.t1.exon1;Parent=MS.gene074587.t1
chr8.1 CDS 77868855 77869841 77868855 ID=cds.MS.gene074587.t1;Parent=MS.gene074587.t1
chr8.1 exon 77870972 77871169 77870972 ID=MS.gene074587.t1.exon2;Parent=MS.gene074587.t1
chr8.1 CDS 77870972 77871169 77870972 ID=cds.MS.gene074587.t1;Parent=MS.gene074587.t1
Gene Sequence

>MS.gene074587

ATGGATGACGACGACGAGATCCACTCGGTTAACTCGATCCACTCGAATCCATCTCCGGCGAGTGGTTCTCCATCTCCGGTGTCGTCTCCGGGAGCGATCGGTAGGATTTCGGTGACGGTTGCGGCACCGGCGGCGAACAGCTATGCATTAGCGCTTCCGATTCAGAATACGACACGTGGAAGCAACGGTGGAGGGAGGGAGGATTGTTGGAGCGAAGCAGCGACGGCGGTGTTGATTGAAGCGTGGGGAGAGAGGTATTTGGAATTGAGCAGAGGGAATTTGAAGCAGAAGCATTGGAAAGAGGTTGCAGAGATTGTGAATGGAAGAGGTGATTATTTGAAAGCGCCGAAAACTGATATTCAGTGTAAGAATCGGATTGATACGGTTAAGAAGAAATATAAATCGGAGAAAGCTAAGATCGGTGCTGGAGGTGGCTCCGGCGGTGTTACAACCAGCACTTGGCGGTTTTATGATCGGTTAGATCAGTTAATTGGTCCAGCTGCCAAGATTAGTGGTGTTTCCGGTACCAGTCATACCGGAAACAGTCATTTGTCACAGCAGAAAGTTCCGTTAGGAATTCCTGTTGGTATTCGCGCCTCTGGAGCTAGAGGCGCGAATCAAGCTAATTCTCAGAAGAAAGATATTCAACAAGCTCAGTTGAATTATCAGAAGATTCAGCTCAGACCACGCGTTTCTGAGCTGAATTCTTCTGATAATTCATCTGAAAAAGAAGCGTTGTCACCGGTGTCAAGCGACAGTTTACCACCACCGGAGAGGAAGAGAGCGAAAGTGATGAATTCAAATTCGAAGGGGAGAGGTTGGGGAAGTGCGGTGAGGGAATTGACTCAGGCAATTGTGAAATTTGGTGAAGCTTATGAACAAGCGGAGACGTCGAAGTTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCTAAGGATTTGGAGTTGCAGAGAATGCAGTTTTTCATGAAAACTCAGGTAGAGATTTCACAGTTGAAACTTGGAAGAAAAAGTGTTAATGTTAATGGTAACACAAGTAATCATCAAAACAACAACAATGTAACCAGCAACAACAACAACAATAGCAACCATAACAATAACAGTGACAGTGAGTGAGTGATGTTTAGGTTTAAGGTTAGGTTCAAATTTCAATTCTGTGTGTATGTGTTTAGTTATTATGGATTAAGATTTGTGCATTAATTGTTGTAGTTAACTTAGAGGGATGTTGTTGCCAAAGAGAATAATTAAAAAAAAAATGAAGAGTATGTTGTACTAAATAATTTAATGTATCAATGTAGCTGATGTGTTATTTGTAATGTGTAACACCATTCTGAATTGTTATTATCAGTGTTAAGGATCATATCTTTGTTGATAGGCTCTAGTTAGTTTGATACAATGTAGTACATATTTAGCATATACAATCTTGTAGCATTAATTTATAGTTACTGTTATGAAAGTTTAGTGACTTTCTTAAAACTGAAAATATAATGTTAATCTTGATAAATTACTGTTATTTTTATGTAACCTAAATGCTATTTTGATGGATTGAGAGTACACTTTACCTTTTTGAATGGTCAAATTCGATTTTGAGTAACTTGATTGTAGATATAAAAGGATTGATTGAACACGAAGGAAAAAAAAAGATAAAGGGCTACATTGATACAAAATATTAAGATAAATTATTCCTGGCGCAATTTTGTGTTTTAAATATCGAATAATATTACATTTATGTACATTATGGCTTAAGAAGACTTAAAACATTAACGTGATGCAGAAGAATCATTCTCAGGGGGGATTGAATTAGGGCTGCTTAGAATTTTGCTGATGACTTTAAGCTGAGATTTGTACTTATGTATCCTTACAGAGGAGGGATATTGTATTTCTCATAGTGCCATCTCTTTTTTTTTTTTTTTTTTGAATTGGCAAATATTATTAATCCGAAACTCTCGCAAGACGATAAGAAACGGTGACAGATAAAATTACAAGGATGCCGCTTATAGGCGTAAAATCGCCCAAGTTCCAAAACGAGAAGAACGGTGGAAGACTGAAAAACCAAAAACTACCAAGAACCACTCCAAAATGGCTTAAGCTATGACTCTGAAATCTAGTGTGGACCACCAAAATTCAGTCCCATAGCTATGCCTCAAGCATCCCAAGCAATAGCCACCAAAAACCGACCGAGGATAAGGAAAAAACACCCCAAACTGCAGCCGTACCTGCCTGAAAACAGCCGCAACAGCTGCTGGACTATCATGACAGCAGCACAGCAGCGCTGCCACAGAAAAACCAGCACCGCTGGGACGTGA

Protein sequence

>MS.gene074587.t1

MDDDDEIHSVNSIHSNPSPASGSPSPVSSPGAIGRISVTVAAPAANSYALALPIQNTTRGSNGGGREDCWSEAATAVLIEAWGERYLELSRGNLKQKHWKEVAEIVNGRGDYLKAPKTDIQCKNRIDTVKKKYKSEKAKIGAGGGSGGVTTSTWRFYDRLDQLIGPAAKISGVSGTSHTGNSHLSQQKVPLGIPVGIRASGARGANQANSQKKDIQQAQLNYQKIQLRPRVSELNSSDNSSEKEALSPVSSDSLPPPERKRAKVMNSNSKGRGWGSAVRELTQAIVKFGEAYEQAETSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQCGPPKFSPIAMPQASQAIATKNRPRIRKKHPKLQPYLPENSRNSCWTIMTAAQQRCHRKTSTAGT