Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07696.t1 | XP_003606271.2 | 97.9 | 626 | 12 | 1 | 1 | 625 | 1 | 626 | 0.00E+00 | 1181.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07696.t1 | Q7DMA9 | 67.5 | 579 | 184 | 3 | 48 | 625 | 46 | 621 | 5.9e-229 | 795.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07696.t1 | G7JM35 | 97.9 | 626 | 12 | 1 | 1 | 625 | 1 | 626 | 0.0e+00 | 1181.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene07696 | 0.826864 | 2.15E-54 | -1.69E-46 |
| MS.gene049203 | MS.gene07696 | 0.811257 | 7.67E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene07696 | 0.808971 | 2.38E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene07696 | 0.80428 | 2.33E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene07696 | 0.802535 | 5.36E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene07696 | 0.807448 | 5.03E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene07696 | 0.807052 | 6.10E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene07696 | 0.827309 | 1.68E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene07696 | 0.84763 | 1.02E-59 | -1.69E-46 |
| MS.gene052037 | MS.gene07696 | 0.81419 | 1.75E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene07696 | 0.811673 | 6.22E-51 | -1.69E-46 |
| MS.gene053998 | MS.gene07696 | 0.848439 | 6.12E-60 | -1.69E-46 |
| MS.gene054651 | MS.gene07696 | 0.835665 | 1.47E-56 | -1.69E-46 |
| MS.gene055464 | MS.gene07696 | 0.825054 | 5.78E-54 | -1.69E-46 |
| MS.gene056050 | MS.gene07696 | 0.864964 | 8.32E-65 | -1.69E-46 |
| MS.gene056162 | MS.gene07696 | 0.806635 | 7.47E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene07696 | 0.801102 | 1.06E-48 | -1.69E-46 |
| MS.gene056366 | MS.gene07696 | 0.805482 | 1.31E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene07696 | 0.839398 | 1.62E-57 | -1.69E-46 |
| MS.gene058009 | MS.gene07696 | 0.802903 | 4.50E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene07696 | 0.814332 | 1.63E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene07696 | 0.801957 | 7.05E-49 | -1.69E-46 |
| MS.gene059015 | MS.gene07696 | 0.808117 | 3.63E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene07696 | 0.804493 | 2.10E-49 | -1.69E-46 |
| MS.gene060962 | MS.gene07696 | 0.819774 | 9.74E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07696.t1 | MTR_4g055500 | 98.243 | 626 | 10 | 1 | 1 | 625 | 1 | 626 | 0.0 | 1273 |
| MS.gene07696.t1 | MTR_8g080980 | 31.481 | 540 | 342 | 10 | 21 | 550 | 24 | 545 | 5.43e-70 | 237 |
| MS.gene07696.t1 | MTR_7g053470 | 29.572 | 514 | 336 | 8 | 44 | 548 | 43 | 539 | 1.74e-61 | 214 |
| MS.gene07696.t1 | MTR_1g017870 | 29.690 | 549 | 351 | 10 | 20 | 556 | 24 | 549 | 4.07e-57 | 202 |
| MS.gene07696.t1 | MTR_1g017870 | 29.655 | 580 | 364 | 13 | 20 | 584 | 24 | 574 | 5.34e-57 | 202 |
| MS.gene07696.t1 | MTR_8g012340 | 30.664 | 512 | 327 | 9 | 50 | 550 | 55 | 549 | 3.29e-56 | 200 |
| MS.gene07696.t1 | MTR_1g017870 | 29.941 | 511 | 313 | 14 | 93 | 584 | 66 | 550 | 8.28e-46 | 171 |
| MS.gene07696.t1 | MTR_1g017870 | 28.750 | 240 | 153 | 6 | 34 | 263 | 125 | 356 | 2.20e-16 | 83.2 |
| MS.gene07696.t1 | MTR_1g017870 | 30.882 | 408 | 255 | 10 | 190 | 584 | 55 | 448 | 5.44e-37 | 144 |
| MS.gene07696.t1 | MTR_1g017870 | 30.636 | 173 | 108 | 4 | 101 | 263 | 84 | 254 | 9.73e-12 | 67.8 |
| MS.gene07696.t1 | MTR_1g017870 | 31.034 | 377 | 242 | 7 | 190 | 556 | 55 | 423 | 6.18e-37 | 143 |
| MS.gene07696.t1 | MTR_1g017870 | 30.636 | 173 | 108 | 4 | 101 | 263 | 84 | 254 | 1.28e-11 | 67.4 |
| MS.gene07696.t1 | MTR_1g017870 | 31.884 | 345 | 218 | 6 | 222 | 556 | 2 | 339 | 6.79e-37 | 141 |
| MS.gene07696.t1 | MTR_1g017870 | 30.409 | 171 | 107 | 4 | 103 | 263 | 2 | 170 | 9.08e-12 | 67.4 |
| MS.gene07696.t1 | MTR_1g017870 | 31.649 | 376 | 231 | 9 | 222 | 584 | 2 | 364 | 8.44e-37 | 141 |
| MS.gene07696.t1 | MTR_1g017870 | 30.409 | 171 | 107 | 4 | 103 | 263 | 2 | 170 | 8.00e-12 | 67.8 |
| MS.gene07696.t1 | MTR_8g038785 | 27.624 | 362 | 228 | 12 | 37 | 384 | 172 | 513 | 7.73e-23 | 103 |
| MS.gene07696.t1 | MTR_8g038785 | 26.860 | 242 | 160 | 5 | 34 | 268 | 290 | 521 | 4.80e-16 | 82.0 |
| MS.gene07696.t1 | MTR_8g038785 | 33.775 | 151 | 91 | 3 | 262 | 407 | 159 | 305 | 2.10e-14 | 77.0 |
| MS.gene07696.t1 | MTR_4g019860 | 77.193 | 57 | 12 | 1 | 1 | 57 | 1 | 56 | 2.75e-20 | 87.4 |
| MS.gene07696.t1 | MTR_4g019860 | 60.526 | 76 | 6 | 1 | 473 | 548 | 51 | 102 | 7.91e-20 | 85.9 |
| MS.gene07696.t1 | MTR_4g039430 | 29.118 | 340 | 198 | 14 | 230 | 552 | 22 | 335 | 1.18e-19 | 91.7 |
| MS.gene07696.t1 | MTR_7g059150 | 41.667 | 120 | 62 | 3 | 399 | 518 | 92 | 203 | 6.65e-18 | 84.7 |
| MS.gene07696.t1 | MTR_2g090135 | 34.932 | 146 | 79 | 4 | 401 | 538 | 97 | 234 | 1.19e-14 | 75.1 |
| MS.gene07696.t1 | MTR_5g080300 | 35.294 | 119 | 71 | 4 | 266 | 383 | 6 | 119 | 5.71e-13 | 68.2 |
| MS.gene07696.t1 | MTR_8g008640 | 25.641 | 195 | 135 | 3 | 79 | 263 | 117 | 311 | 4.23e-12 | 69.7 |
| MS.gene07696.t1 | MTR_8g010620 | 23.077 | 351 | 245 | 11 | 141 | 479 | 7 | 344 | 5.16e-12 | 68.6 |
| MS.gene07696.t1 | MTR_8g010620 | 26.829 | 246 | 159 | 8 | 34 | 267 | 24 | 260 | 1.60e-11 | 67.0 |
| MS.gene07696.t1 | MTR_8g010620 | 23.077 | 351 | 245 | 11 | 141 | 479 | 43 | 380 | 9.73e-12 | 67.8 |
| MS.gene07696.t1 | MTR_8g010620 | 26.829 | 246 | 159 | 8 | 34 | 267 | 60 | 296 | 1.51e-11 | 67.0 |
| MS.gene07696.t1 | MTR_2g090135 | 40.777 | 103 | 52 | 4 | 409 | 510 | 105 | 199 | 1.10e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07696.t1 | AT3G54010 | 70.645 | 620 | 178 | 3 | 7 | 625 | 5 | 621 | 0.0 | 909 |
| MS.gene07696.t1 | AT3G54010 | 70.787 | 534 | 152 | 3 | 93 | 625 | 1 | 531 | 0.0 | 787 |
| MS.gene07696.t1 | AT5G48570 | 30.320 | 531 | 343 | 8 | 31 | 550 | 43 | 557 | 4.23e-62 | 216 |
| MS.gene07696.t1 | AT3G25230 | 29.755 | 531 | 346 | 8 | 30 | 550 | 34 | 547 | 2.95e-60 | 211 |
| MS.gene07696.t1 | AT3G25230 | 29.755 | 531 | 346 | 8 | 30 | 550 | 34 | 547 | 3.49e-60 | 211 |
| MS.gene07696.t1 | AT3G21640 | 29.766 | 299 | 176 | 11 | 270 | 551 | 48 | 329 | 3.68e-20 | 93.2 |
| MS.gene07696.t1 | AT4G30480 | 33.333 | 144 | 88 | 2 | 376 | 519 | 79 | 214 | 1.88e-14 | 74.7 |
| MS.gene07696.t1 | AT3G55520 | 35.537 | 121 | 68 | 4 | 266 | 383 | 6 | 119 | 3.68e-13 | 68.9 |
| MS.gene07696.t1 | AT3G55520 | 35.537 | 121 | 68 | 4 | 266 | 383 | 6 | 119 | 3.68e-13 | 68.9 |
| MS.gene07696.t1 | AT3G55520 | 35.537 | 121 | 68 | 4 | 266 | 383 | 6 | 119 | 3.68e-13 | 68.9 |
| MS.gene07696.t1 | AT4G30480 | 34.109 | 129 | 77 | 2 | 376 | 504 | 79 | 199 | 2.15e-12 | 67.0 |
| MS.gene07696.t1 | AT2G42580 | 26.630 | 184 | 94 | 5 | 331 | 511 | 407 | 552 | 1.16e-11 | 68.2 |
| MS.gene07696.t1 | AT3G58620 | 32.787 | 122 | 60 | 3 | 397 | 513 | 441 | 545 | 3.51e-11 | 66.6 |
| MS.gene07696.t1 | AT3G58620 | 32.787 | 122 | 60 | 3 | 397 | 513 | 441 | 545 | 3.56e-11 | 66.6 |
Find 152 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCCAATACATGTCTTAT+TGG | 0.160786 | 4.1:+42896657 | None:intergenic |
| AAAGCTCGAAAACAATTTAA+AGG | 0.252297 | 4.1:-42886866 | MS.gene07696:CDS |
| CCTGCACCTCACCATCTTTC+CGG | 0.253397 | 4.1:+42886768 | None:intergenic |
| CAACCATTGGATTTCTGTTC+TGG | 0.258493 | 4.1:-42891868 | MS.gene07696:CDS |
| CTGTTCTCAATGAAGAAAAT+AGG | 0.258621 | 4.1:-42891924 | MS.gene07696:CDS |
| TTTCCAAATGTGAAGAAGTA+TGG | 0.269003 | 4.1:+42894602 | None:intergenic |
| ATTTCAGCAAAGACAGTTAC+TGG | 0.270927 | 4.1:-42894656 | MS.gene07696:CDS |
| CCAGGTTATCACTGATGATT+TGG | 0.300295 | 4.1:-42895748 | MS.gene07696:intron |
| AGGGTTGGTTTGCTCACTTT+TGG | 0.308176 | 4.1:-42886682 | MS.gene07696:CDS |
| GAACCATACTTCTTCACATT+TGG | 0.309966 | 4.1:-42894605 | MS.gene07696:CDS |
| TGATTTGGAAGTGGTTAAAA+AGG | 0.314360 | 4.1:-42895733 | MS.gene07696:intron |
| GTTTAAGTTGAATTATAGTA+TGG | 0.331521 | 4.1:+42886613 | None:intergenic |
| GTCCATTGAGACCTGTAATA+AGG | 0.341897 | 4.1:-42887849 | MS.gene07696:intron |
| CTATCAGTTCAATTTCAAAA+TGG | 0.345517 | 4.1:+42896163 | None:intergenic |
| GATAGCAGGCAGCAACATTC+AGG | 0.345976 | 4.1:+42887894 | None:intergenic |
| TGTAGTTATTACAGGGTAAC+AGG | 0.351522 | 4.1:-42889578 | MS.gene07696:intron |
| ATCCCCATTTCAAGACCTTT+AGG | 0.352401 | 4.1:+42894268 | None:intergenic |
| CCATCCTTCAGATGCTGATC+AGG | 0.360523 | 4.1:-42897814 | MS.gene07696:intron |
| TTCACTTCATAAGGTTCTCT+TGG | 0.369019 | 4.1:+42894775 | None:intergenic |
| TACCAAGCCTTCACTTCATA+AGG | 0.369742 | 4.1:+42894766 | None:intergenic |
| AGCAAATCCTGCGCACGTTA+AGG | 0.369791 | 4.1:-42887360 | MS.gene07696:CDS |
| ATGAAGCCTCAGTTGCATTA+TGG | 0.375020 | 4.1:-42896240 | MS.gene07696:CDS |
| ACTTCACCCTTCAACATTGT+TGG | 0.382173 | 4.1:+42896600 | None:intergenic |
| GGTAAAAGCAAGATGCTATT+GGG | 0.385037 | 4.1:-42896639 | MS.gene07696:CDS |
| CATAAAACATACCTTATTAC+AGG | 0.388687 | 4.1:+42887838 | None:intergenic |
| CTCATCAGATGGAACGAATT+CGG | 0.389272 | 4.1:-42886741 | MS.gene07696:CDS |
| AACACCAATAAGACATGTAT+TGG | 0.389636 | 4.1:-42896661 | MS.gene07696:CDS |
| TCAGTAGGTGGTTTCTTCTT+CGG | 0.390342 | 4.1:+42897912 | None:intergenic |
| TGTACGTGAAGGGGAGGGTT+GGG | 0.402568 | 4.1:-42894803 | MS.gene07696:CDS |
| ATGCTATTGGGCTTGCTAGA+AGG | 0.404390 | 4.1:-42896627 | MS.gene07696:CDS |
| AGCAAGGGCTGATTTCAAAA+TGG | 0.405604 | 4.1:-42887288 | MS.gene07696:intron |
| TCACTCCACAATTCGAACTT+TGG | 0.406292 | 4.1:-42897527 | MS.gene07696:CDS |
| GGGTAAAAGCAAGATGCTAT+TGG | 0.407059 | 4.1:-42896640 | MS.gene07696:CDS |
| GTGAGGGACGTGCTTGGAGA+TGG | 0.416863 | 4.1:-42892400 | MS.gene07696:CDS |
| TGTTCTCAATGAAGAAAATA+GGG | 0.417407 | 4.1:-42891923 | MS.gene07696:CDS |
| AAACCATCAGGAGCAGAAAC+AGG | 0.421852 | 4.1:+42896204 | None:intergenic |
| GTACCTAAAGGTCTTGAAAT+GGG | 0.422391 | 4.1:-42894271 | MS.gene07696:CDS |
| ACTTCAGAATCTTCTATAAC+AGG | 0.425096 | 4.1:+42894172 | None:intergenic |
| GAACAAGCTCCACTTCAAAC+TGG | 0.425332 | 4.1:+42894149 | None:intergenic |
| GCAAATCCTGCGCACGTTAA+GGG | 0.429054 | 4.1:-42887359 | MS.gene07696:CDS |
| TGCACCTGACGCAGATCAAA+AGG | 0.429264 | 4.1:-42886702 | MS.gene07696:CDS |
| CCGGAAAGATGGTGAGGTGC+AGG | 0.440595 | 4.1:-42886768 | MS.gene07696:CDS |
| CGTCGGATTCGTGATGGAAA+AGG | 0.442344 | 4.1:-42892364 | MS.gene07696:intron |
| AGGAAGAAGAAAATTGTAGC+TGG | 0.442596 | 4.1:-42897879 | MS.gene07696:CDS |
| AAGCTCGAAAACAATTTAAA+GGG | 0.447801 | 4.1:-42886865 | MS.gene07696:CDS |
| GGTACCTAAAGGTCTTGAAA+TGG | 0.448036 | 4.1:-42894272 | MS.gene07696:CDS |
| AAATGGAGTTCATCATCCTT+AGG | 0.451248 | 4.1:+42896180 | None:intergenic |
| TTGTACGTGAAGGGGAGGGT+TGG | 0.454454 | 4.1:-42894804 | MS.gene07696:CDS |
| TTCTCCCAACTTTAGATAGC+AGG | 0.457885 | 4.1:+42887880 | None:intergenic |
| TTAACTTCTGCAATTTCTCC+AGG | 0.461518 | 4.1:+42886827 | None:intergenic |
| GGGCTATTTGACAAGAAGCC+TGG | 0.462556 | 4.1:-42886845 | MS.gene07696:CDS |
| CCGAGGGCGCTCATATTCAA+TGG | 0.464333 | 4.1:-42891395 | MS.gene07696:CDS |
| TACCTTATTACAGGTCTCAA+TGG | 0.471697 | 4.1:+42887847 | None:intergenic |
| CATACCTCCATGTTCGGATC+GGG | 0.471700 | 4.1:+42897483 | None:intergenic |
| TGTCCTGTTTCTGCTCCTGA+TGG | 0.471971 | 4.1:-42896207 | MS.gene07696:CDS |
| GCGCCCTCGGGAACATTTGA+AGG | 0.473870 | 4.1:+42891408 | None:intergenic |
| AAATCGCATACCTCCATGTT+CGG | 0.475444 | 4.1:+42897477 | None:intergenic |
| TCGTCGTGGAATGGCCTACA+TGG | 0.476188 | 4.1:-42887330 | MS.gene07696:CDS |
| CCATTGAATATGAGCGCCCT+CGG | 0.480069 | 4.1:+42891395 | None:intergenic |
| ATCAAGTCACAAGTGAGATC+CGG | 0.484585 | 4.1:-42886787 | MS.gene07696:CDS |
| TTGGATTTCTGTTCTGGAGA+AGG | 0.484862 | 4.1:-42891862 | MS.gene07696:CDS |
| AACTTATCATAAGCATAGTC+TGG | 0.484883 | 4.1:+42891579 | None:intergenic |
| TTTCCTTCCTCGTCATCTTG+TGG | 0.484899 | 4.1:+42888083 | None:intergenic |
| TGCTGCCTGCTATCTAAAGT+TGG | 0.485680 | 4.1:-42887885 | MS.gene07696:CDS |
| AGGAATTCCAACAATGTTGA+AGG | 0.487638 | 4.1:-42896607 | MS.gene07696:CDS |
| TCCACAATTCGAACTTTGGA+TGG | 0.489031 | 4.1:-42897523 | MS.gene07696:CDS |
| TGATAACGATGGCCAACCAT+TGG | 0.493123 | 4.1:-42891881 | MS.gene07696:CDS |
| AACCTTATGAAGTGAAGGCT+TGG | 0.496665 | 4.1:-42894768 | MS.gene07696:intron |
| GGAAGAAGAAAATTGTAGCT+GGG | 0.500245 | 4.1:-42897878 | MS.gene07696:CDS |
| ACACCAATAAGACATGTATT+GGG | 0.502823 | 4.1:-42896660 | MS.gene07696:CDS |
| TGCAAAGGCAAAGTATGAAA+AGG | 0.505520 | 4.1:-42889529 | MS.gene07696:intron |
| CGAGGGCGCTCATATTCAAT+GGG | 0.507392 | 4.1:-42891394 | MS.gene07696:CDS |
| CCTGATCAGCATCTGAAGGA+TGG | 0.511206 | 4.1:+42897814 | None:intergenic |
| TAGTGTAGGTTGTACGTGAA+GGG | 0.513732 | 4.1:-42894813 | MS.gene07696:intron |
| GTGACAAGAGCCATCTCTCC+AGG | 0.518680 | 4.1:+42891609 | None:intergenic |
| TTCTGAAGTCCAGTTTGAAG+TGG | 0.519155 | 4.1:-42894158 | MS.gene07696:CDS |
| CATGAAGTAGACTGTCATGA+AGG | 0.520378 | 4.1:+42891962 | None:intergenic |
| CACCTACTGAGGATGAGAAA+AGG | 0.522348 | 4.1:-42897899 | MS.gene07696:CDS |
| TCTACTTCATGTTCATTACA+AGG | 0.522997 | 4.1:-42891950 | MS.gene07696:CDS |
| CAACAGGTGAGGGACGTGCT+TGG | 0.523904 | 4.1:-42892406 | MS.gene07696:intron |
| TGAGGGACGTGCTTGGAGAT+GGG | 0.527732 | 4.1:-42892399 | MS.gene07696:CDS |
| TGTGTTCGTCTGATGCTACC+TGG | 0.528932 | 4.1:-42891627 | MS.gene07696:CDS |
| TATCACTGATGATTTGGAAG+TGG | 0.530670 | 4.1:-42895742 | MS.gene07696:CDS |
| TTAGTGTAGGTTGTACGTGA+AGG | 0.531659 | 4.1:-42894814 | MS.gene07696:intron |
| ACAAGTGAGATCCGGAAAGA+TGG | 0.532223 | 4.1:-42886779 | MS.gene07696:CDS |
| GAATCTACCCGATCCGAACA+TGG | 0.538026 | 4.1:-42897490 | MS.gene07696:CDS |
| GTAGGTGGTTTCTTCTTCGG+TGG | 0.538662 | 4.1:+42897915 | None:intergenic |
| GGGTCTTTATCGTCGTGGAA+TGG | 0.540148 | 4.1:-42887339 | MS.gene07696:CDS |
| CTGATCAGCATCTGAAGGAT+GGG | 0.546144 | 4.1:+42897815 | None:intergenic |
| CATTGAATATGAGCGCCCTC+GGG | 0.552329 | 4.1:+42891396 | None:intergenic |
| AACTTTGGATGGAGTAGTCG+TGG | 0.553914 | 4.1:-42897512 | MS.gene07696:CDS |
| ATGCTTATGATAAGTTTCCA+AGG | 0.556943 | 4.1:-42891572 | MS.gene07696:intron |
| GGTAACAGGTTGTTCAAAGA+AGG | 0.557236 | 4.1:-42889564 | MS.gene07696:CDS |
| GCTGCCTGCTATCTAAAGTT+GGG | 0.561282 | 4.1:-42887884 | MS.gene07696:CDS |
| TCATCCTTAGGAAAACCATC+AGG | 0.563133 | 4.1:+42896192 | None:intergenic |
| AAGAGAACCTTATGAAGTGA+AGG | 0.564476 | 4.1:-42894773 | MS.gene07696:CDS |
| AACAATGTTGAAGGGTGAAG+TGG | 0.566507 | 4.1:-42896598 | MS.gene07696:CDS |
| CAGAACAGAAATCCAATGGT+TGG | 0.573852 | 4.1:+42891869 | None:intergenic |
| AAAATCTCCATTGCCCATGT+AGG | 0.574139 | 4.1:+42887316 | None:intergenic |
| ATGAAGTAGACTGTCATGAA+GGG | 0.577080 | 4.1:+42891963 | None:intergenic |
| TGATACACTCAGGTACCTAA+AGG | 0.577159 | 4.1:-42894283 | MS.gene07696:intron |
| TCCATCCAAAGTTCGAATTG+TGG | 0.578035 | 4.1:+42897522 | None:intergenic |
| GCATACCTCCATGTTCGGAT+CGG | 0.578773 | 4.1:+42897482 | None:intergenic |
| ATAAAACGTCGGATTCGTGA+TGG | 0.581465 | 4.1:-42892370 | MS.gene07696:CDS |
| AGTGTAGGTTGTACGTGAAG+GGG | 0.582361 | 4.1:-42894812 | MS.gene07696:intron |
| AAAACTGAAGCAGAAAGAGC+AGG | 0.583103 | 4.1:-42887132 | MS.gene07696:intron |
| TCCCTATTACAGGACTGGAC+AGG | 0.583776 | 4.1:-42890916 | MS.gene07696:intron |
| ATTACAGGACTGGACAGGAA+TGG | 0.584353 | 4.1:-42890911 | MS.gene07696:intron |
| GGAATGGCCTACATGGGCAA+TGG | 0.584398 | 4.1:-42887323 | MS.gene07696:CDS |
| AGGAAAATATGAACTTGCAA+AGG | 0.584639 | 4.1:-42889544 | MS.gene07696:CDS |
| CTTCACATTTGGAAAATCAG+AGG | 0.586334 | 4.1:-42894594 | MS.gene07696:intron |
| CGGAAAGATGGTGAGGTGCA+GGG | 0.586706 | 4.1:-42886767 | MS.gene07696:CDS |
| TAAAGACCCTTAACGTGCGC+AGG | 0.589178 | 4.1:+42887353 | None:intergenic |
| TAGGTTGTACGTGAAGGGGA+GGG | 0.592925 | 4.1:-42894808 | MS.gene07696:CDS |
| TCTGATGCTACCTGGAGAGA+TGG | 0.593692 | 4.1:-42891619 | MS.gene07696:CDS |
| GCACCTGACGCAGATCAAAA+GGG | 0.595622 | 4.1:-42886701 | MS.gene07696:CDS |
| ACACACAATTCAAATCCCTC+TGG | 0.596542 | 4.1:+42891645 | None:intergenic |
| AAAGGTCTTGAAATGGGGAT+CGG | 0.596604 | 4.1:-42894265 | MS.gene07696:CDS |
| GTGCAGGGAGACTCATCAGA+TGG | 0.597210 | 4.1:-42886752 | MS.gene07696:CDS |
| TCTTCTATAACAGGCATCAG+AGG | 0.600715 | 4.1:+42894181 | None:intergenic |
| GTAGGTTGTACGTGAAGGGG+AGG | 0.602480 | 4.1:-42894809 | MS.gene07696:intron |
| CTGACGCAGATCAAAAGGGT+TGG | 0.603196 | 4.1:-42886697 | MS.gene07696:CDS |
| ATGAAAGCTTTGATTAGACC+TGG | 0.604620 | 4.1:-42897849 | MS.gene07696:CDS |
| TACCTAAAGGTCTTGAAATG+GGG | 0.605676 | 4.1:-42894270 | MS.gene07696:CDS |
| GGATGGGAATCACCACCACC+AGG | 0.608783 | 4.1:+42897831 | None:intergenic |
| CAGGCCTTCAAATGTTCCCG+AGG | 0.609663 | 4.1:-42891412 | MS.gene07696:CDS |
| CAAACCTGATCAGCATCTGA+AGG | 0.610403 | 4.1:+42897810 | None:intergenic |
| TTGATCATGTCACACACAGA+AGG | 0.612060 | 4.1:-42894629 | MS.gene07696:CDS |
| TGAAATGGGGATCGGAACAA+TGG | 0.613883 | 4.1:-42894257 | MS.gene07696:CDS |
| CGTCGTGGAATGGCCTACAT+GGG | 0.615183 | 4.1:-42887329 | MS.gene07696:CDS |
| GGAATTCCAACAATGTTGAA+GGG | 0.617518 | 4.1:-42896606 | MS.gene07696:CDS |
| CTACTTCATGTTCATTACAA+GGG | 0.619652 | 4.1:-42891949 | MS.gene07696:CDS |
| AATCCACAAGATGACGAGGA+AGG | 0.623099 | 4.1:-42888086 | MS.gene07696:CDS |
| GTTGAAGGGTGAAGTGGCAA+TGG | 0.626370 | 4.1:-42896592 | MS.gene07696:intron |
| AGGCCTTCAAATGTTCCCGA+GGG | 0.631919 | 4.1:-42891411 | MS.gene07696:CDS |
| GTTAAGGGTCTTTATCGTCG+TGG | 0.634075 | 4.1:-42887344 | MS.gene07696:CDS |
| TCTCCAGAACAGAAATCCAA+TGG | 0.635723 | 4.1:+42891865 | None:intergenic |
| TGAAGTAGACTGTCATGAAG+GGG | 0.639682 | 4.1:+42891964 | None:intergenic |
| TCCTCACCATAATGCAACTG+AGG | 0.639794 | 4.1:+42896234 | None:intergenic |
| GAAGAAGAAACCACCTACTG+AGG | 0.651305 | 4.1:-42897910 | MS.gene07696:CDS |
| TGAGATCCGGAAAGATGGTG+AGG | 0.663359 | 4.1:-42886774 | MS.gene07696:CDS |
| AGCTGAAAATATCAGAAACA+CGG | 0.668935 | 4.1:-42890866 | MS.gene07696:intron |
| GCTTTGATTAGACCTGGTGG+TGG | 0.676017 | 4.1:-42897843 | MS.gene07696:CDS |
| TTATCATAAGCATAGTCTGG+CGG | 0.684187 | 4.1:+42891582 | None:intergenic |
| GCCTCAGTTGCATTATGGTG+AGG | 0.691219 | 4.1:-42896235 | MS.gene07696:CDS |
| GAAGTAGACTGTCATGAAGG+GGG | 0.694116 | 4.1:+42891965 | None:intergenic |
| ATCAGATGGAACGAATTCGG+AGG | 0.697245 | 4.1:-42886738 | MS.gene07696:CDS |
| TGTTAATCCACAAGATGACG+AGG | 0.703704 | 4.1:-42888090 | MS.gene07696:CDS |
| GACACGAGAGTTGATAACGA+TGG | 0.709689 | 4.1:-42891892 | MS.gene07696:CDS |
| AAAGCTTTGATTAGACCTGG+TGG | 0.727816 | 4.1:-42897846 | MS.gene07696:CDS |
| TCTACCCGATCCGAACATGG+AGG | 0.741236 | 4.1:-42897487 | MS.gene07696:intron |
| ATGGGCGCCTGATAAAACGT+CGG | 0.752983 | 4.1:-42892381 | MS.gene07696:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 42886625 | 42897979 | 42886625 | ID=MS.gene07696 |
| chr4.1 | mRNA | 42886625 | 42897979 | 42886625 | ID=MS.gene07696.t1;Parent=MS.gene07696 |
| chr4.1 | exon | 42897815 | 42897979 | 42897815 | ID=MS.gene07696.t1.exon1;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42897815 | 42897979 | 42897815 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42897488 | 42897557 | 42897488 | ID=MS.gene07696.t1.exon2;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42897488 | 42897557 | 42897488 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42896593 | 42896690 | 42896593 | ID=MS.gene07696.t1.exon3;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42896593 | 42896690 | 42896593 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42896146 | 42896268 | 42896146 | ID=MS.gene07696.t1.exon4;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42896146 | 42896268 | 42896146 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42895734 | 42895766 | 42895734 | ID=MS.gene07696.t1.exon5;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42895734 | 42895766 | 42895734 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42894769 | 42894827 | 42894769 | ID=MS.gene07696.t1.exon6;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42894769 | 42894827 | 42894769 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42894595 | 42894679 | 42894595 | ID=MS.gene07696.t1.exon7;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42894595 | 42894679 | 42894595 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42894138 | 42894293 | 42894138 | ID=MS.gene07696.t1.exon8;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42894138 | 42894293 | 42894138 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42892365 | 42892422 | 42892365 | ID=MS.gene07696.t1.exon9;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42892365 | 42892422 | 42892365 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42891858 | 42892006 | 42891858 | ID=MS.gene07696.t1.exon10;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42891858 | 42892006 | 42891858 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42891573 | 42891670 | 42891573 | ID=MS.gene07696.t1.exon11;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42891573 | 42891670 | 42891573 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42891362 | 42891431 | 42891362 | ID=MS.gene07696.t1.exon12;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42891362 | 42891431 | 42891362 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42890867 | 42890926 | 42890867 | ID=MS.gene07696.t1.exon13;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42890867 | 42890926 | 42890867 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42889530 | 42889586 | 42889530 | ID=MS.gene07696.t1.exon14;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42889530 | 42889586 | 42889530 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42888064 | 42888132 | 42888064 | ID=MS.gene07696.t1.exon15;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42888064 | 42888132 | 42888064 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42887850 | 42887927 | 42887850 | ID=MS.gene07696.t1.exon16;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42887850 | 42887927 | 42887850 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42887289 | 42887390 | 42887289 | ID=MS.gene07696.t1.exon17;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42887289 | 42887390 | 42887289 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42887133 | 42887204 | 42887133 | ID=MS.gene07696.t1.exon18;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42887133 | 42887204 | 42887133 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| chr4.1 | exon | 42886625 | 42886900 | 42886625 | ID=MS.gene07696.t1.exon19;Parent=MS.gene07696.t1 |
| chr4.1 | CDS | 42886625 | 42886900 | 42886625 | ID=cds.MS.gene07696.t1;Parent=MS.gene07696.t1 |
| Gene Sequence |
| Protein sequence |
