Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08663.t1 | RHN42616.1 | 100 | 706 | 0 | 0 | 1 | 706 | 412 | 1117 | 0.00E+00 | 1302.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08663.t1 | Q8BKC5 | 37.2 | 717 | 417 | 8 | 6 | 706 | 397 | 1096 | 1.6e-126 | 454.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08663.t1 | A0A396GNB0 | 100.0 | 706 | 0 | 0 | 1 | 706 | 412 | 1117 | 0.0e+00 | 1302.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene08663 | 0.80677 | 7.00E-50 | -1.69E-46 |
| MS.gene052015 | MS.gene08663 | 0.810141 | 1.34E-50 | -1.69E-46 |
| MS.gene052494 | MS.gene08663 | 0.824373 | 8.36E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene08663 | -0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene053549 | MS.gene08663 | 0.811438 | 7.00E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene08663 | -0.815811 | 7.64E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene08663 | -0.804591 | 2.01E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene08663 | -0.806375 | 8.48E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene08663 | -0.805523 | 1.28E-49 | -1.69E-46 |
| MS.gene059103 | MS.gene08663 | 0.825177 | 5.40E-54 | -1.69E-46 |
| MS.gene059480 | MS.gene08663 | 0.827478 | 1.53E-54 | -1.69E-46 |
| MS.gene06077 | MS.gene08663 | -0.808414 | 3.13E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08663.t1 | MTR_8g085950 | 99.717 | 706 | 2 | 0 | 1 | 706 | 412 | 1117 | 0.0 | 1457 |
| MS.gene08663.t1 | MTR_7g085820 | 84.561 | 706 | 108 | 1 | 1 | 706 | 414 | 1118 | 0.0 | 1218 |
| MS.gene08663.t1 | MTR_3g064980 | 27.515 | 676 | 449 | 11 | 2 | 675 | 477 | 1113 | 5.09e-66 | 237 |
| MS.gene08663.t1 | MTR_3g064910 | 45.455 | 231 | 124 | 1 | 476 | 706 | 533 | 761 | 9.98e-60 | 215 |
| MS.gene08663.t1 | MTR_2g006750 | 26.200 | 729 | 455 | 23 | 2 | 703 | 372 | 1044 | 6.51e-52 | 195 |
| MS.gene08663.t1 | MTR_3g064930 | 28.383 | 606 | 382 | 13 | 2 | 601 | 473 | 1032 | 1.75e-49 | 187 |
| MS.gene08663.t1 | MTR_3g064940 | 25.686 | 510 | 325 | 10 | 2 | 497 | 456 | 925 | 5.16e-29 | 124 |
| MS.gene08663.t1 | MTR_3g065010 | 26.626 | 492 | 309 | 12 | 23 | 497 | 463 | 919 | 3.01e-28 | 122 |
| MS.gene08663.t1 | MTR_7g098920 | 51.613 | 124 | 26 | 3 | 481 | 600 | 6 | 99 | 3.95e-27 | 107 |
| MS.gene08663.t1 | MTR_8g099855 | 34.667 | 150 | 80 | 3 | 527 | 675 | 252 | 384 | 5.21e-19 | 90.5 |
| MS.gene08663.t1 | MTR_3g064935 | 41.837 | 98 | 56 | 1 | 578 | 675 | 38 | 134 | 1.02e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08663.t1 | AT5G19820 | 84.844 | 706 | 106 | 1 | 1 | 706 | 412 | 1116 | 0.0 | 1228 |
| MS.gene08663.t1 | AT4G27640 | 24.893 | 703 | 471 | 20 | 1 | 683 | 371 | 1036 | 2.11e-48 | 184 |
Find 169 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAATACCGCTACTATTT+TGG | 0.031192 | 4.3:+14782626 | None:intergenic |
| CAATTGTCCAATTGCATTAA+TGG | 0.133282 | 4.3:+14790381 | None:intergenic |
| CCTCGTGGAAATAAAATTTA+AGG | 0.186312 | 4.3:+14786225 | None:intergenic |
| TCATATGCCATTACATTATC+TGG | 0.189146 | 4.3:+14783098 | None:intergenic |
| CTCGGTGTTTGTGCTGAGTT+TGG | 0.199189 | 4.3:-14783274 | MS.gene08663:CDS |
| CTCAATCAAATCACCTTTAA+TGG | 0.208670 | 4.3:+14782805 | None:intergenic |
| TGGACAATTGTCTACTGATT+TGG | 0.219251 | 4.3:-14790368 | MS.gene08663:CDS |
| TGACAGCATCATAATATTTC+TGG | 0.220680 | 4.3:+14787902 | None:intergenic |
| CTGTCGGAAAGGAGAAATTT+AGG | 0.230051 | 4.3:-14787783 | MS.gene08663:CDS |
| GTTAGAAAAGCTGCCGTTTC+AGG | 0.232754 | 4.3:-14786200 | MS.gene08663:intron |
| TTGGGAAGGTATTGATTGTT+TGG | 0.242619 | 4.3:+14782645 | None:intergenic |
| CAAATTGCTTGTACTTCTTC+AGG | 0.252482 | 4.3:-14788196 | MS.gene08663:intron |
| GGCTAGACTCTGCAAGTGTC+TGG | 0.264832 | 4.3:-14786985 | MS.gene08663:CDS |
| CTATCAGGTGGGCGAGATAT+TGG | 0.266277 | 4.3:-14784481 | MS.gene08663:intron |
| TCACCTGTACGCGGGGATTC+TGG | 0.279627 | 4.3:+14790278 | None:intergenic |
| ACAGATCTCCGGGATGCTTT+TGG | 0.283742 | 4.3:-14784778 | MS.gene08663:intron |
| CAATACTGTCCTGGTGAAAT+TGG | 0.284416 | 4.3:+14783045 | None:intergenic |
| TCGGTGTTTGTGCTGAGTTT+GGG | 0.303824 | 4.3:-14783273 | MS.gene08663:CDS |
| TTCAGTAAATGAATGCTTAC+AGG | 0.307262 | 4.3:-14785580 | MS.gene08663:intron |
| CTAACTATTCCATCCAAGTA+TGG | 0.308374 | 4.3:+14788219 | None:intergenic |
| AAGTATGGCGTTAAAATTTC+AGG | 0.313954 | 4.3:+14788234 | None:intergenic |
| GGACAATTGTCTACTGATTT+GGG | 0.318866 | 4.3:-14790367 | MS.gene08663:CDS |
| ATTGCAATCCTTCTCTCTTC+AGG | 0.323590 | 4.3:+14783621 | None:intergenic |
| CATGCTTCGTGCTAAGTCTA+TGG | 0.334668 | 4.3:-14787830 | MS.gene08663:CDS |
| TCACGATCAACTTTGTTCTA+TGG | 0.339301 | 4.3:-14782771 | MS.gene08663:CDS |
| TACATATCTTCCATTCTTGT+TGG | 0.350706 | 4.3:-14783447 | MS.gene08663:CDS |
| TTGAACTGTCTGCCCATTAA+AGG | 0.352539 | 4.3:-14782818 | MS.gene08663:CDS |
| GGCATGACAAATTCCATATA+AGG | 0.363015 | 4.3:+14786948 | None:intergenic |
| TGGGAAGGTATTGATTGTTT+GGG | 0.363550 | 4.3:+14782646 | None:intergenic |
| GCTGCATTTGCAGGTAGTTC+CGG | 0.371697 | 4.3:-14782846 | MS.gene08663:intron |
| TCTGTGTTCAAACCTCTTGT+TGG | 0.375892 | 4.3:-14783247 | MS.gene08663:CDS |
| TGCAATGCTTCCACCAAAGC+TGG | 0.377656 | 4.3:+14785964 | None:intergenic |
| TATCAGGTGGGCGAGATATT+GGG | 0.378338 | 4.3:-14784480 | MS.gene08663:intron |
| TGGAATCAAGACTAGTGTTC+TGG | 0.380110 | 4.3:-14786454 | MS.gene08663:CDS |
| AGAGGGAGCCTTGACTGCTT+TGG | 0.381283 | 4.3:-14788036 | MS.gene08663:CDS |
| GTCTATGGAATGCATAAGTT+TGG | 0.383864 | 4.3:-14787815 | MS.gene08663:CDS |
| TTTCTGCAGGCAGCGGTATA+CGG | 0.384330 | 4.3:-14783298 | MS.gene08663:intron |
| ACTCTCGGTGACAAAAGAAT+TGG | 0.392745 | 4.3:-14786474 | MS.gene08663:CDS |
| CTTGCACAAATTTCTGTGTC+AGG | 0.397759 | 4.3:+14785612 | None:intergenic |
| TTATCTGGATGAAGCGCATT+AGG | 0.403617 | 4.3:+14783113 | None:intergenic |
| AGGTCCGACAGCTCTCTCTT+AGG | 0.406373 | 4.3:-14782669 | MS.gene08663:CDS |
| CATTGACCAATATAGCCTTC+AGG | 0.412023 | 4.3:+14787872 | None:intergenic |
| TGATATTGAACTTGCAAATC+CGG | 0.412982 | 4.3:+14790343 | None:intergenic |
| CAGCTGTTTGTTCTGTTGCA+AGG | 0.416156 | 4.3:+14781861 | None:intergenic |
| TAGCAGGCGGTAATGTTTGC+TGG | 0.418065 | 4.3:+14781810 | None:intergenic |
| TGGGCAGCCATTAATGCAAT+TGG | 0.420671 | 4.3:-14790388 | MS.gene08663:CDS |
| AATAGTTGAAGAGGTAAAAC+AGG | 0.425292 | 4.3:-14784736 | MS.gene08663:CDS |
| AGCATCAAAATCTTCAGCTT+GGG | 0.426942 | 4.3:+14784668 | None:intergenic |
| TGACAATGCAGTTTCTGCTC+TGG | 0.428092 | 4.3:-14783078 | MS.gene08663:CDS |
| TCAATCAAATCACCTTTAAT+GGG | 0.436293 | 4.3:+14782806 | None:intergenic |
| ACCGTACCTGAAGGCTATAT+TGG | 0.437750 | 4.3:-14787878 | MS.gene08663:CDS |
| ATTCTTTCCATGGATTGATC+AGG | 0.444124 | 4.3:-14786373 | MS.gene08663:intron |
| GCCAGCCCTAGCTGCTGCCA+TGG | 0.444572 | 4.3:-14790308 | MS.gene08663:CDS |
| AGGCAAGAAGGATGCTTTGA+AGG | 0.444588 | 4.3:+14784443 | None:intergenic |
| TGTCGGAAAGGAGAAATTTA+GGG | 0.446376 | 4.3:-14787782 | MS.gene08663:CDS |
| GTGTTCAAACCTCTTGTTGG+AGG | 0.452256 | 4.3:-14783244 | MS.gene08663:intron |
| CATCTTATTTGACTCCTATG+TGG | 0.455513 | 4.3:-14784404 | MS.gene08663:CDS |
| GATGCAGGTTGCAGGAACTT+TGG | 0.456597 | 4.3:-14786255 | MS.gene08663:intron |
| CAGCATCAAAATCTTCAGCT+TGG | 0.459418 | 4.3:+14784667 | None:intergenic |
| CAGGTGGAAGCAAGGGTAGC+AGG | 0.463259 | 4.3:+14781794 | None:intergenic |
| ATATCTTCCATTCTTGTTGG+AGG | 0.464362 | 4.3:-14783444 | MS.gene08663:CDS |
| TTGAGATTGCCCTTTCTCAA+TGG | 0.464568 | 4.3:+14786032 | None:intergenic |
| ATTTAGGGCTGATGCTAAGC+AGG | 0.466706 | 4.3:-14787767 | MS.gene08663:intron |
| TGACAGTATCATCCCAGCTT+TGG | 0.467023 | 4.3:-14785977 | MS.gene08663:CDS |
| CTGCTACCCTTGCTTCCACC+TGG | 0.467347 | 4.3:-14781793 | MS.gene08663:CDS |
| ATTGTCTACTGATTTGGGTC+CGG | 0.467478 | 4.3:-14790362 | MS.gene08663:CDS |
| ATGCTAACCTGTCTAACATC+TGG | 0.474453 | 4.3:+14783404 | None:intergenic |
| TGAAAGAAGGATTCTTTCCA+TGG | 0.475708 | 4.3:-14786383 | MS.gene08663:CDS |
| TGTAGCATGTAACTTGTTGT+TGG | 0.478385 | 4.3:+14787099 | None:intergenic |
| GATGACAATTCTTCAAAGAA+AGG | 0.480654 | 4.3:+14784423 | None:intergenic |
| AGAAATTTGTGCAAGTATGT+TGG | 0.481433 | 4.3:-14785604 | MS.gene08663:CDS |
| ATCTTATTTGACTCCTATGT+GGG | 0.485888 | 4.3:-14784403 | MS.gene08663:intron |
| GCAAAGTTAGCCATTGAGAA+AGG | 0.486249 | 4.3:-14786042 | MS.gene08663:CDS |
| CTGATCAACATCCTCGTGTA+AGG | 0.486407 | 4.3:-14790411 | MS.gene08663:CDS |
| GTCCTTGCAAGGATCACAAA+TGG | 0.486615 | 4.3:-14787133 | MS.gene08663:CDS |
| CAATATCTCTATAGCAATGC+CGG | 0.488186 | 4.3:-14786079 | MS.gene08663:intron |
| CAGGCAGCGGTATACGGCCT+CGG | 0.494617 | 4.3:-14783292 | MS.gene08663:CDS |
| GATCATTCTCATACCTGAAA+CGG | 0.495140 | 4.3:+14786187 | None:intergenic |
| GAATCCTTCTTTCAACTCAT+CGG | 0.496573 | 4.3:+14786392 | None:intergenic |
| TTGCAAGTTCAATATCATCA+AGG | 0.497804 | 4.3:-14790337 | MS.gene08663:CDS |
| TTTAGAGCAAGTGGTGGCTA+TGG | 0.499528 | 4.3:-14790449 | MS.gene08663:CDS |
| TTACATGCCTCCAACAAGAA+TGG | 0.499838 | 4.3:+14783437 | None:intergenic |
| GTCTGAGTAAACTAACCATT+CGG | 0.499941 | 4.3:+14781837 | None:intergenic |
| ATCAGTTGCTGATTCATCTC+AGG | 0.501257 | 4.3:-14788012 | MS.gene08663:intron |
| ATCATCCATGGCAGCAGCTA+GGG | 0.501960 | 4.3:+14790303 | None:intergenic |
| ATTTCAGAATGGTAAACAAA+TGG | 0.503330 | 4.3:-14788063 | MS.gene08663:intron |
| CAGTATCATCCCAGCTTTGG+TGG | 0.504748 | 4.3:-14785974 | MS.gene08663:CDS |
| ATGGAATGCATAAGTTTGGT+TGG | 0.505162 | 4.3:-14787811 | MS.gene08663:CDS |
| TCCATGGCAGCAGCTAGGGC+TGG | 0.505867 | 4.3:+14790307 | None:intergenic |
| TTTGGTGGAAGCATTGCATA+AGG | 0.506410 | 4.3:-14785959 | MS.gene08663:intron |
| ACTATGCAAACTATGAAGAA+AGG | 0.510590 | 4.3:+14781729 | None:intergenic |
| GCTAGACTCTGCAAGTGTCT+GGG | 0.510865 | 4.3:-14786984 | MS.gene08663:CDS |
| GACAATGCAGTTTCTGCTCT+GGG | 0.511023 | 4.3:-14783077 | MS.gene08663:CDS |
| CGGTGTTTGTGCTGAGTTTG+GGG | 0.513048 | 4.3:-14783272 | MS.gene08663:CDS |
| CATTAAAGGTGATTTGATTG+AGG | 0.514731 | 4.3:-14782804 | MS.gene08663:CDS |
| GATGAAGCGCATTAGGATGT+TGG | 0.515875 | 4.3:+14783120 | None:intergenic |
| TATGCCGATGAGTTGAAAGA+AGG | 0.518825 | 4.3:-14786396 | MS.gene08663:CDS |
| AACAACAAGTTACATGCTAC+AGG | 0.519395 | 4.3:-14787097 | MS.gene08663:intron |
| CTTACACGAGGATGTTGATC+AGG | 0.522287 | 4.3:+14790412 | None:intergenic |
| GAAAGGGCAATCTCAAGGTC+GGG | 0.523223 | 4.3:-14786025 | MS.gene08663:CDS |
| TTTCCAGAATCCCCGCGTAC+AGG | 0.525098 | 4.3:-14790281 | MS.gene08663:intron |
| CTCCATTTGTGATCCTTGCA+AGG | 0.529100 | 4.3:+14787131 | None:intergenic |
| AATCATCCATGGCAGCAGCT+AGG | 0.533390 | 4.3:+14790302 | None:intergenic |
| AACTGATGCCAAAGCAGTCA+AGG | 0.535384 | 4.3:+14788028 | None:intergenic |
| TGCAAGTTCAATATCATCAA+GGG | 0.542378 | 4.3:-14790336 | MS.gene08663:CDS |
| CAAAGTTAGCCATTGAGAAA+GGG | 0.544023 | 4.3:-14786041 | MS.gene08663:CDS |
| GGGCAGAGTCAATACTGTCC+TGG | 0.546727 | 4.3:+14783036 | None:intergenic |
| GGTCAAGTCAATAGTTGAAG+AGG | 0.548828 | 4.3:-14784745 | MS.gene08663:CDS |
| GGCAGACAGTTCAACCATGC+CGG | 0.549952 | 4.3:+14782827 | None:intergenic |
| TGAAACTCCAGATGTTAGAC+AGG | 0.551089 | 4.3:-14783411 | MS.gene08663:intron |
| TGCAAACTATGAAGAAAGGA+TGG | 0.552426 | 4.3:+14781733 | None:intergenic |
| ATCAACATCCTCGTGTAAGG+TGG | 0.552996 | 4.3:-14790408 | MS.gene08663:CDS |
| TGGAAATAAAATTTAAGGAG+TGG | 0.553423 | 4.3:+14786230 | None:intergenic |
| TTTGCAGATCGTAATAGCTC+CGG | 0.557132 | 4.3:+14786060 | None:intergenic |
| ATGCATAAGTTTGGTTGGAA+TGG | 0.560001 | 4.3:-14787806 | MS.gene08663:CDS |
| CGATCAACTTTGTTCTATGG+CGG | 0.561251 | 4.3:-14782768 | MS.gene08663:CDS |
| AAGATGACCAGGTGGAAGCA+AGG | 0.562842 | 4.3:+14781786 | None:intergenic |
| AGAAAGGGCAATCTCAAGGT+CGG | 0.564082 | 4.3:-14786026 | MS.gene08663:CDS |
| GAAGTTCTTATGTCCTTGCA+AGG | 0.564320 | 4.3:-14787144 | MS.gene08663:CDS |
| GCAGATGTGATGGTAACGTC+AGG | 0.566720 | 4.3:+14786897 | None:intergenic |
| GGTTGGAATGGCTGTCGGAA+AGG | 0.567317 | 4.3:-14787794 | MS.gene08663:CDS |
| TTCTTCAAAGAAAGGCAAGA+AGG | 0.569138 | 4.3:+14784431 | None:intergenic |
| TAGATGATTCTGATGATGAA+AGG | 0.572299 | 4.3:-14786857 | MS.gene08663:intron |
| ATTTGCAGGTAGTTCCGGCA+TGG | 0.573214 | 4.3:-14782841 | MS.gene08663:intron |
| AGTCTAACCTGATCAATCCA+TGG | 0.574932 | 4.3:+14786366 | None:intergenic |
| AGATGACCAGGTGGAAGCAA+GGG | 0.581291 | 4.3:+14781787 | None:intergenic |
| GATTAAAGAGGAAAACGAGC+AGG | 0.581297 | 4.3:-14784631 | MS.gene08663:CDS |
| AGTTTGGTTGGAATGGCTGT+CGG | 0.582073 | 4.3:-14787799 | MS.gene08663:CDS |
| ACCAATATAGCCTTCAGGTA+CGG | 0.584658 | 4.3:+14787877 | None:intergenic |
| AGGAAAGGTCACCTGTACGC+GGG | 0.585014 | 4.3:+14790270 | None:intergenic |
| TGGTAAACAAATGGTGCAAG+AGG | 0.585953 | 4.3:-14788054 | MS.gene08663:CDS |
| ACGAGGATGTTGATCAGGAA+AGG | 0.589437 | 4.3:+14790417 | None:intergenic |
| GCAATGCTTCCACCAAAGCT+GGG | 0.591321 | 4.3:+14785965 | None:intergenic |
| CTAGACTCTGCAAGTGTCTG+GGG | 0.591446 | 4.3:-14786983 | MS.gene08663:CDS |
| GCTTCATCCAGATAATGTAA+TGG | 0.597429 | 4.3:-14783105 | MS.gene08663:CDS |
| TTGCGGCTGCAAAGATGACC+AGG | 0.597788 | 4.3:+14781775 | None:intergenic |
| ATTGAGAAAGGGCAATCTCA+AGG | 0.599282 | 4.3:-14786030 | MS.gene08663:CDS |
| ACAAGACTCCTGAAGAGAGA+AGG | 0.600764 | 4.3:-14783629 | MS.gene08663:CDS |
| CTTGCAACAGAACAAACAGC+TGG | 0.607654 | 4.3:-14781860 | MS.gene08663:CDS |
| GAAGCAGACTGAAGCAATGG+TGG | 0.608511 | 4.3:+14786927 | None:intergenic |
| AACTTTGTTCTATGGCGGAG+AGG | 0.608912 | 4.3:-14782763 | MS.gene08663:intron |
| GGGATTCTGGAAATCATCCA+TGG | 0.611070 | 4.3:+14790291 | None:intergenic |
| GGACAGTATTGACTCTGCCC+AGG | 0.611934 | 4.3:-14783033 | MS.gene08663:intron |
| AGTATGGAAACTATCACTCT+CGG | 0.613971 | 4.3:-14786489 | MS.gene08663:CDS |
| TAAGCAGTACCTCCAACAAG+AGG | 0.616877 | 4.3:+14783235 | None:intergenic |
| AGAACAAACAGCTGGCCGAA+TGG | 0.617898 | 4.3:-14781852 | MS.gene08663:CDS |
| GTCTGAATCAGCAGATGTGA+TGG | 0.620767 | 4.3:+14786887 | None:intergenic |
| AGTGAAGCAGACTGAAGCAA+TGG | 0.623414 | 4.3:+14786924 | None:intergenic |
| TGGGCCTAAGAGAGAGCTGT+CGG | 0.625244 | 4.3:+14782665 | None:intergenic |
| TCAACATCCTCGTGTAAGGT+GGG | 0.625966 | 4.3:-14790407 | MS.gene08663:CDS |
| AATAGTAGCGGTATTTGCAG+AGG | 0.628250 | 4.3:-14782622 | MS.gene08663:intron |
| AATCAAGACTAGTGTTCTGG+AGG | 0.630386 | 4.3:-14786451 | MS.gene08663:CDS |
| TGCTGTCATACCGTACCTGA+AGG | 0.640419 | 4.3:-14787887 | MS.gene08663:CDS |
| TAAAGAGGAAAACGAGCAGG+AGG | 0.642022 | 4.3:-14784628 | MS.gene08663:CDS |
| GCAAGTTCAATATCATCAAG+GGG | 0.642471 | 4.3:-14790335 | MS.gene08663:CDS |
| CTGGACGAACATACCCACAT+AGG | 0.647072 | 4.3:+14784390 | None:intergenic |
| AAGGAAAGGTCACCTGTACG+CGG | 0.659871 | 4.3:+14790269 | None:intergenic |
| TAGACTTAGCACGAAGCATG+CGG | 0.663457 | 4.3:+14787833 | None:intergenic |
| GGTAAACAAATGGTGCAAGA+GGG | 0.663711 | 4.3:-14788053 | MS.gene08663:CDS |
| GGAAAGGTCACCTGTACGCG+GGG | 0.667372 | 4.3:+14790271 | None:intergenic |
| GTTGCAGAGCAGTGTCGTGA+AGG | 0.667612 | 4.3:-14783582 | MS.gene08663:CDS |
| ATACCTTCCCAAAATAGTAG+CGG | 0.684508 | 4.3:-14782634 | MS.gene08663:CDS |
| GGTGTTTGTGCTGAGTTTGG+GGG | 0.689686 | 4.3:-14783271 | MS.gene08663:CDS |
| TGTAAAGCAAGCTGTTGTTG+CGG | 0.689701 | 4.3:+14781758 | None:intergenic |
| CAAACTCAGCACAAACACCG+AGG | 0.699327 | 4.3:+14783275 | None:intergenic |
| GTGGAAGCAAGGGTAGCAGG+CGG | 0.721019 | 4.3:+14781797 | None:intergenic |
| CGGCTGCAAAGATGACCAGG+TGG | 0.721639 | 4.3:+14781778 | None:intergenic |
| CTTATGCAGAGGCTCTATCG+AGG | 0.722154 | 4.3:-14783157 | MS.gene08663:intron |
| ATGGCTGCCCACCTTACACG+AGG | 0.728704 | 4.3:+14790400 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 14781739 | 14790485 | 14781739 | ID=MS.gene08663 |
| chr4.3 | mRNA | 14781739 | 14790485 | 14781739 | ID=MS.gene08663.t1;Parent=MS.gene08663 |
| chr4.3 | exon | 14790282 | 14790485 | 14790282 | ID=MS.gene08663.t1.exon1;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14790282 | 14790485 | 14790282 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14788197 | 14788301 | 14788197 | ID=MS.gene08663.t1.exon2;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14788197 | 14788301 | 14788197 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14788013 | 14788078 | 14788013 | ID=MS.gene08663.t1.exon3;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14788013 | 14788078 | 14788013 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14787768 | 14787932 | 14787768 | ID=MS.gene08663.t1.exon4;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14787768 | 14787932 | 14787768 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14787098 | 14787172 | 14787098 | ID=MS.gene08663.t1.exon5;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14787098 | 14787172 | 14787098 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14786858 | 14787012 | 14786858 | ID=MS.gene08663.t1.exon6;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14786858 | 14787012 | 14786858 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14786374 | 14786509 | 14786374 | ID=MS.gene08663.t1.exon7;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14786374 | 14786509 | 14786374 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14786201 | 14786270 | 14786201 | ID=MS.gene08663.t1.exon8;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14786201 | 14786270 | 14786201 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14785960 | 14786087 | 14785960 | ID=MS.gene08663.t1.exon9;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14785960 | 14786087 | 14785960 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14785581 | 14785637 | 14785581 | ID=MS.gene08663.t1.exon10;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14785581 | 14785637 | 14785581 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14784611 | 14784796 | 14784611 | ID=MS.gene08663.t1.exon11;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14784611 | 14784796 | 14784611 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14784404 | 14784496 | 14784404 | ID=MS.gene08663.t1.exon12;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14784404 | 14784496 | 14784404 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14783573 | 14783658 | 14783573 | ID=MS.gene08663.t1.exon13;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14783573 | 14783658 | 14783573 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14783412 | 14783478 | 14783412 | ID=MS.gene08663.t1.exon14;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14783412 | 14783478 | 14783412 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14783245 | 14783311 | 14783245 | ID=MS.gene08663.t1.exon15;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14783245 | 14783311 | 14783245 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14783034 | 14783170 | 14783034 | ID=MS.gene08663.t1.exon16;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14783034 | 14783170 | 14783034 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14782764 | 14782855 | 14782764 | ID=MS.gene08663.t1.exon17;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14782764 | 14782855 | 14782764 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14782623 | 14782689 | 14782623 | ID=MS.gene08663.t1.exon18;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14782623 | 14782689 | 14782623 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| chr4.3 | exon | 14781739 | 14781903 | 14781739 | ID=MS.gene08663.t1.exon19;Parent=MS.gene08663.t1 |
| chr4.3 | CDS | 14781739 | 14781903 | 14781739 | ID=cds.MS.gene08663.t1;Parent=MS.gene08663.t1 |
| Gene Sequence |
| Protein sequence |
