AlfalfaGEDB | MS.gene73339

M. sativa cultivar XinJiangDaYe / MS.gene73339

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747
PFAM: PF02458.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73339.t1	XP_003594968.1	93.9	442	27	0	1	442	1	442	2.40E-244	854.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73339.t1	Q39048	39.9	436	222	13	7	425	1	413	7.7e-82	305.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73339.t1	G7IN16	93.9	442	27	0	1	442	1	442	1.7e-244	854.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049217	MS.gene73339	0.812876	3.40E-51	-1.69E-46
MS.gene049222	MS.gene73339	0.804155	2.47E-49	-1.69E-46
MS.gene049232	MS.gene73339	0.825402	4.78E-54	-1.69E-46
MS.gene049285	MS.gene73339	0.802829	4.66E-49	-1.69E-46
MS.gene049320	MS.gene73339	0.805984	1.03E-49	-1.69E-46
MS.gene049356	MS.gene73339	0.828921	6.87E-55	-1.69E-46
MS.gene049369	MS.gene73339	0.828455	8.91E-55	-1.69E-46
MS.gene049396	MS.gene73339	0.863732	2.02E-64	-1.69E-46
MS.gene049488	MS.gene73339	0.801062	1.07E-48	-1.69E-46
MS.gene049552	MS.gene73339	0.816604	5.08E-52	-1.69E-46

Showing 1 to 10 of 142 entries

Previous1 2 3 4 5…15Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene023496	MS.gene73339	PPI
MS.gene08811	MS.gene73339	PPI
MS.gene08966	MS.gene73339	PPI
MS.gene09279	MS.gene73339	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73339.t1	MTR_2g036780	93.891	442	27	0	1	442	1	442	0.0	861
MS.gene73339.t1	MTR_3g100150	77.027	444	96	3	1	441	1	441	0.0	702
MS.gene73339.t1	MTR_1g035890	72.374	438	116	3	1	436	1	435	0.0	640
MS.gene73339.t1	MTR_8g081600	35.294	272	159	6	164	429	1	261	1.22e-41	149
MS.gene73339.t1	MTR_8g081480	51.145	131	62	2	16	145	16	145	2.29e-35	128
MS.gene73339.t1	MTR_7g114960	25.112	446	271	17	19	424	15	437	1.15e-26	112
MS.gene73339.t1	MTR_1g011660	26.014	419	267	14	35	424	27	431	6.26e-24	103
MS.gene73339.t1	MTR_8g079970	24.910	277	168	9	19	276	10	265	6.08e-16	80.1
MS.gene73339.t1	MTR_8g079950	28.916	166	110	4	19	180	10	171	1.45e-13	72.8
MS.gene73339.t1	MTR_8g096530	25.735	272	173	9	18	273	13	271	1.62e-13	72.4

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73339.t1	AT4G24510	39.908	436	222	13	7	425	1	413	2.12e-101	309
MS.gene73339.t1	AT4G13840	37.441	422	250	8	11	430	13	422	1.19e-92	286
MS.gene73339.t1	AT3G23840	37.558	434	245	11	1	430	1	412	7.21e-92	284
MS.gene73339.t1	AT4G29250	23.843	432	274	18	23	419	23	434	1.60e-18	88.2
MS.gene73339.t1	AT2G19070	25.170	294	192	8	19	291	11	297	1.83e-17	84.7
MS.gene73339.t1	AT3G48720	30.345	145	96	4	47	186	41	185	6.94e-13	70.5
MS.gene73339.t1	AT5G41040	25.194	258	166	7	30	270	49	296	3.28e-12	68.6
MS.gene73339.t1	AT5G41040	25.292	257	165	7	30	269	33	279	3.59e-12	68.6
MS.gene73339.t1	AT5G63560	25.681	257	172	10	30	276	25	272	8.98e-12	67.0
MS.gene73339.t1	AT1G24430	23.827	277	185	10	33	303	27	283	1.17e-11	66.6

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 85 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTTGTTGGGGAATAT+TGG	0.260857	2.4:-52702793	MS.gene73339:CDS
AAAGTTAACATTTGTAGACT+TGG	0.520459	2.4:-52702366	MS.gene73339:CDS
AAATCACAATTCGCCATAAT+AGG	0.291121	2.4:+52702302	None:intergenic
AAATCCAGCAGTGGAAACAT+CGG	0.641078	2.4:+52705031	None:intergenic
AAATGGAGTCACATACTAGC+TGG	0.573672	2.4:-52702911	MS.gene73339:CDS
AAATGTATAGCACAAATAAG+AGG	0.564021	2.4:-52702632	MS.gene73339:CDS
AAATTATTTCAGCTATGATA+TGG	0.259708	2.4:-52702655	MS.gene73339:CDS
AAATTGGTGGAGAAAGGTGA+TGG	0.594488	2.4:-52702416	MS.gene73339:CDS
AACACCGATGTTTCCACTGC+TGG	0.384086	2.4:-52705035	MS.gene73339:CDS
AACTGGTCAAGTTCTTTCCC+TGG	0.458794	2.4:+52702188	None:intergenic

Showing 1 to 10 of 85 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATCACAATTCGCCATAAT+AGG	+	chr2.4:52705066-52705085	None:intergenic	30.0%
AATCGAAGAAATAAATGGAC+CGG	+	chr2.4:52702273-52702292	None:intergenic	30.0%
ACAAAATTGGATAGGAATTG+AGG	+	chr2.4:52704523-52704542	None:intergenic	30.0%
ACTCGTTTAATAAAAAGGTC+AGG	+	chr2.4:52703963-52703982	None:intergenic	30.0%
ATATTTCATTCAACTCCTCT+TGG	-	chr2.4:52703597-52703616	MS.gene73339:intron	30.0%
ATTGTATGGTTCGTCTAATA+TGG	-	chr2.4:52703243-52703262	MS.gene73339:intron	30.0%
ATTGTTAGTTAGTGGAAAGA+AGG	-	chr2.4:52702987-52703006	MS.gene73339:CDS	30.0%
CAAAAAAGAAAACGTTGTTG+GGG	-	chr2.4:52704564-52704583	MS.gene73339:intron	30.0%
CCAAGTTATGCAATTCAAAA+TGG	+	chr2.4:52703145-52703164	None:intergenic	30.0%
CTAAGAAATTAAAGGGGATA+AGG	+	chr2.4:52703504-52703523	None:intergenic	30.0%

Showing 1 to 10 of 237 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	52702130	52705257	52702130	ID=MS.gene73339
chr2.4	mRNA	52702130	52705257	52702130	ID=MS.gene73339.t1;Parent=MS.gene73339
chr2.4	exon	52704823	52705257	52704823	ID=MS.gene73339.t1.exon1;Parent=MS.gene73339.t1
chr2.4	CDS	52704823	52705257	52704823	ID=cds.MS.gene73339.t1;Parent=MS.gene73339.t1
chr2.4	exon	52702130	52703023	52702130	ID=MS.gene73339.t1.exon2;Parent=MS.gene73339.t1
chr2.4	CDS	52702130	52703023	52702130	ID=cds.MS.gene73339.t1;Parent=MS.gene73339.t1

Gene Sequence

>MS.gene73339

ATGGGTTCACTGCCCAATTTAGAAGCACCTCCTCCTTCAAGTTCAAGAATTTCAACCGTCGTTCCAGCAACACCACGAGGCGAAGAAAAAGGTGAACACAACCTAAACTACATGGATTTGTTGATGAAGCTTCACTATGTCCGGTCCATTTATTTCTTCGATTCTGAAGCTGTTCAAGGCCTTACAATATCCGATTTAAAAACACCGATGTTTCCACTGCTGGATTTGTACTCGCATGTTGCCGGTCGAGTTAGAATAGCCGAATCCGGTAGACCGTTTATCAAATGCAATGATGCCGGTGTACGAATCGCGGAGTCGCATTGTGATAAAACGTTGAGAGAATGGTTGGATGAAAATGAGTATTCAGTTGATGAACTTGTTCATGATCATGTGCTTGGTCCTGATCTTGCTTTTTCTCCTTTGGTTTTTGTCAAGGTACGTACTAAGATGAATGCACGTCATATCTCATACCTACTTTTTTCATCATATTATTATTGTCAACCGTGTTATTGATAAATTGAAATTTTAGGTTTAGGTCATAGTCTCACATTAGATGTTATATGGTATGTATTTTGTAAAATTCAACCCCAAACTATAACTTAGTGTTAAAGACATTTAAGATTTGTTGGACCACCTTCTATCCGATTATCTTTATATATCAAACCACTTATATATGTGTTAAGAGCCCAAAATTGGATGAGATATTATGTATGTTATAAATGGGGGACAACTATCACCTTACAAACCGATGTTGTAAGGTTAAATTAAACTCAACCAAATTCTAATATTTTACATTGTCATTAATTTGCACTCCCTTCAAATTAATACTATTGTAAGTGAATCGGAAATTAACATGCATTGTTAGTTAGTGGAAAGAAGGTTTACATTGGGGATTAAGAAATATTTGACCTTTATACTAAATCGGTTTTAAAGTCACAAACATGACTCATTGTGATATGCTGACAATGGGTAAAACTTTTTTACATGGAGAAGGCATTAAAATTAATTAAATCCATTTTGAATTGCATAACTTGGGGAAATTCAACAAGACTCAATGCTATAGTTTTGTTCCTTTTTTTTTTTTTTACAAATTAATTATGTTCTGCAATTATAATTGTATGGTTCGTCTAATATGGACATTAACTATTTTTAATAAAAATGTGAACTTTGTTGAGAAAAATAATACTTAGATAAGTTAGCAGATAGCAAATAAACTAGTAGATTGAACGTATATTATTTGATAAATCAGCAGTTAAACTTTTTTTGAATGTCAAAATGTTAGTATGTTAGTTGTGAAATTAATATTTTCTCTTGTAACAAAAAAATTAGTATTTTCTATCTTGCCAAAATTTAAACCCTAAACATTTTACTCCTTATCCCCTTTAATTTCTTAGCTCAACAAAGTGAGCTACTCATCCTTGTTAAACTAACTTATGAAATATCAAAGGGCATAAACATAAGGTGTGAATATTTCATTCAACTCCTCTTGGAACCTTTTGTCTTTCCTTTAGTAATCATGCCCTCTTGCTTATCACAATGTCATTTTACTATATTAGATAGAGAATTGCTACTTGTGAATAAGGGTGGAAATAGGCTAGACCGGGTCGGGCTTTGTAAGGCCTAAGCCTGACCTACTTCAAAAATTATAGGTATGAGTCTGGTCTATTACTCGTCATAGGCTCATTTTCAAGGTCTGATCTGACATTTATAAAGGCCTGATGAAGCCTGAAAGCCTGAAAGCTTAATAGGTCAGCCTGATGGACTTAATAGGCTTTTTTTAAAACCTTAGTCTGACCTATTTAAGTAAATAGGTTTTATAAAAAGCTTGAGCCTGACCTTTTTATTAAACGAGTTAGGCCGAGTTAGACTTTAAATAGGCTATGTCGTAGGCCCCTGTCGGGTGATCTGGCATGTTCCCACCCCTACTTGTGAATTAATTCTTTCATAGCAGAAAACTTGGGTATCATAAAGTGTAGTTGACATTTCCTAACCCCACATAATAGAAATATTGTTTTTTTTTTCTTTTAGAGGAAGAAATATTGATTGTTGGGTTCTTTCAAATTGAGTATCTTGTAACCAAAAAAAGAAATTTTGAGTATCATAAACTTTAGTTAACACTTATGGACCCACTTAAAAATACTATGTTTGATTTATTATATTATTATATGATTGATCGGTGGATTGAAATCAACTAAAATTTTGAGGTGCAATTAATTATGCATGTTTTCTTGCAGTTCACGTGTTTCAAATGTGGGGGACTCTCTGTAGGACTAAGTTGGGCTCACATCCTTGGAGATGCATTTTCAGCTTTTAATTTCATCACCAAATGGAGTCACATACTAGCTGGTCAATCCCTACCAAAATCTCTTCACATGCCAAGTCTTGCCAAACCTCAATTCCTATCCAATTTTGTTTTTGATAATCCCATTTCCATCAAAAAAGAAAACGTTGTTGGGGAATATTGGCTTGCTGCAAATGATTGTTATGTCCCTAGTCACACATTTCACATCACTTCTAGCCAACTTCACCATTTGGTAAAAACAACCAATATCAATTTCAATACCAATACTGAGTATTTTGAAATTATTTCAGCTATGATATGGAAATGTATAGCACAAATAAGAGGAGACATTGGACCTAGGGTTGTGACAATATGCACTAAAAATAAAAATACCTCTAAATGTGCTGAAAATGAATTCCCAACAAATGACATATTGTTGAGCAAAATTGAAACAAATTTGCGCCCGGACGAATATAATATATTAGATTTAGTGAATCTGATTGGTGAGAAAAAAATTAATGAGAATTATGCATTGGAAAAATTGGTGGAGAAAGGTGATGGAAAGGATGATTTTTTAGTATATGGAGCAAAGTTAACATTTGTAGACTTGGAAGAAGCTGATTTTTACGGTGTAAAGCTTAATGGGAAGAAACCTATTATGGCGAATTGTGATTTACGCGGTGTGGGTGATCAAGGAGTTGTTTTGGTTCTTCCAGGACCAGAAGATGATGAAGGTAATAATGGAAGAATGATAACAGTTTCATTGCCAGGGAAAGAACTTGACCAGTTGAAATATAAGCTTGAAAGAGAATGGGGTATACAACATTATGCAAGTCTACAATTTTAA

Protein sequence

>MS.gene73339.t1

MGSLPNLEAPPPSSSRISTVVPATPRGEEKGEHNLNYMDLLMKLHYVRSIYFFDSEAVQGLTISDLKTPMFPLLDLYSHVAGRVRIAESGRPFIKCNDAGVRIAESHCDKTLREWLDENEYSVDELVHDHVLGPDLAFSPLVFVKFTCFKCGGLSVGLSWAHILGDAFSAFNFITKWSHILAGQSLPKSLHMPSLAKPQFLSNFVFDNPISIKKENVVGEYWLAANDCYVPSHTFHITSSQLHHLVKTTNINFNTNTEYFEIISAMIWKCIAQIRGDIGPRVVTICTKNKNTSKCAENEFPTNDILLSKIETNLRPDEYNILDLVNLIGEKKINENYALEKLVEKGDGKDDFLVYGAKLTFVDLEEADFYGVKLNGKKPIMANCDLRGVGDQGVVLVLPGPEDDEGNNGRMITVSLPGKELDQLKYKLEREWGIQHYASLQF