Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73339.t1 | XP_003594968.1 | 93.9 | 442 | 27 | 0 | 1 | 442 | 1 | 442 | 2.40E-244 | 854.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73339.t1 | Q39048 | 39.9 | 436 | 222 | 13 | 7 | 425 | 1 | 413 | 7.7e-82 | 305.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73339.t1 | G7IN16 | 93.9 | 442 | 27 | 0 | 1 | 442 | 1 | 442 | 1.7e-244 | 854.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene73339 | 0.812876 | 3.40E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene73339 | 0.804155 | 2.47E-49 | -1.69E-46 |
| MS.gene049232 | MS.gene73339 | 0.825402 | 4.78E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene73339 | 0.802829 | 4.66E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene73339 | 0.805984 | 1.03E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene73339 | 0.828921 | 6.87E-55 | -1.69E-46 |
| MS.gene049369 | MS.gene73339 | 0.828455 | 8.91E-55 | -1.69E-46 |
| MS.gene049396 | MS.gene73339 | 0.863732 | 2.02E-64 | -1.69E-46 |
| MS.gene049488 | MS.gene73339 | 0.801062 | 1.07E-48 | -1.69E-46 |
| MS.gene049552 | MS.gene73339 | 0.816604 | 5.08E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene73339 | 0.842195 | 3.00E-58 | -1.69E-46 |
| MS.gene049633 | MS.gene73339 | 0.822415 | 2.40E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene73339 | 0.820726 | 5.89E-53 | -1.69E-46 |
| MS.gene049907 | MS.gene73339 | 0.820206 | 7.75E-53 | -1.69E-46 |
| MS.gene050323 | MS.gene73339 | 0.823776 | 1.15E-53 | -1.69E-46 |
| MS.gene050380 | MS.gene73339 | -0.84903 | 4.20E-60 | -1.69E-46 |
| MS.gene050381 | MS.gene73339 | -0.809878 | 1.52E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene73339 | 0.807143 | 5.84E-50 | -1.69E-46 |
| MS.gene050499 | MS.gene73339 | 0.864786 | 9.46E-65 | -1.69E-46 |
| MS.gene050502 | MS.gene73339 | 0.859332 | 4.45E-63 | -1.69E-46 |
| MS.gene050520 | MS.gene73339 | 0.85985 | 3.11E-63 | -1.69E-46 |
| MS.gene050593 | MS.gene73339 | 0.82553 | 4.46E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene73339 | 0.802159 | 6.40E-49 | -1.69E-46 |
| MS.gene050662 | MS.gene73339 | 0.832046 | 1.18E-55 | -1.69E-46 |
| MS.gene050675 | MS.gene73339 | 0.825311 | 5.02E-54 | -1.69E-46 |
| MS.gene050686 | MS.gene73339 | 0.822991 | 1.76E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene73339 | 0.80585 | 1.09E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene73339 | 0.806127 | 9.57E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene73339 | 0.855036 | 8.26E-62 | -1.69E-46 |
| MS.gene05080 | MS.gene73339 | 0.804715 | 1.89E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene73339 | 0.810783 | 9.71E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene73339 | 0.813462 | 2.53E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene73339 | 0.808152 | 3.56E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene73339 | 0.807724 | 4.40E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene73339 | 0.830239 | 3.28E-55 | -1.69E-46 |
| MS.gene051255 | MS.gene73339 | 0.849571 | 2.97E-60 | -1.69E-46 |
| MS.gene051387 | MS.gene73339 | 0.81027 | 1.25E-50 | -1.69E-46 |
| MS.gene051509 | MS.gene73339 | 0.853035 | 3.12E-61 | -1.69E-46 |
| MS.gene051692 | MS.gene73339 | 0.813848 | 2.08E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene73339 | 0.818055 | 2.39E-52 | -1.69E-46 |
| MS.gene051941 | MS.gene73339 | 0.83929 | 1.73E-57 | -1.69E-46 |
| MS.gene052164 | MS.gene73339 | 0.812397 | 4.33E-51 | -1.69E-46 |
| MS.gene052271 | MS.gene73339 | 0.809209 | 2.12E-50 | -1.69E-46 |
| MS.gene052346 | MS.gene73339 | 0.850645 | 1.49E-60 | -1.69E-46 |
| MS.gene052414 | MS.gene73339 | 0.814436 | 1.54E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene73339 | 0.808758 | 2.65E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene73339 | 0.802208 | 6.26E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene73339 | 0.80903 | 2.31E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene73339 | 0.875419 | 3.13E-68 | -1.69E-46 |
| MS.gene052632 | MS.gene73339 | 0.814218 | 1.72E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene73339 | 0.802996 | 4.30E-49 | -1.69E-46 |
| MS.gene052916 | MS.gene73339 | 0.818567 | 1.83E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene73339 | 0.814836 | 1.26E-51 | -1.69E-46 |
| MS.gene052999 | MS.gene73339 | 0.846508 | 2.08E-59 | -1.69E-46 |
| MS.gene053018 | MS.gene73339 | 0.830044 | 3.67E-55 | -1.69E-46 |
| MS.gene053203 | MS.gene73339 | 0.805775 | 1.13E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene73339 | 0.811392 | 7.16E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene73339 | 0.834158 | 3.52E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene73339 | 0.827109 | 1.88E-54 | -1.69E-46 |
| MS.gene053436 | MS.gene73339 | 0.83522 | 1.90E-56 | -1.69E-46 |
| MS.gene053449 | MS.gene73339 | 0.837917 | 3.92E-57 | -1.69E-46 |
| MS.gene053505 | MS.gene73339 | 0.83718 | 6.05E-57 | -1.69E-46 |
| MS.gene053574 | MS.gene73339 | 0.864413 | 1.24E-64 | -1.69E-46 |
| MS.gene053626 | MS.gene73339 | 0.826191 | 3.11E-54 | -1.69E-46 |
| MS.gene053758 | MS.gene73339 | 0.826627 | 2.45E-54 | -1.69E-46 |
| MS.gene053813 | MS.gene73339 | 0.864578 | 1.10E-64 | -1.69E-46 |
| MS.gene053824 | MS.gene73339 | 0.811341 | 7.35E-51 | -1.69E-46 |
| MS.gene053912 | MS.gene73339 | 0.836232 | 1.06E-56 | -1.69E-46 |
| MS.gene054003 | MS.gene73339 | 0.801318 | 9.53E-49 | -1.69E-46 |
| MS.gene054486 | MS.gene73339 | 0.830978 | 2.17E-55 | -1.69E-46 |
| MS.gene054595 | MS.gene73339 | 0.839476 | 1.55E-57 | -1.69E-46 |
| MS.gene054642 | MS.gene73339 | 0.802084 | 6.64E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene73339 | 0.818741 | 1.67E-52 | -1.69E-46 |
| MS.gene054954 | MS.gene73339 | 0.806198 | 9.24E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene73339 | 0.839577 | 1.46E-57 | -1.69E-46 |
| MS.gene055206 | MS.gene73339 | 0.813087 | 3.06E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene73339 | 0.819721 | 1.00E-52 | -1.69E-46 |
| MS.gene055647 | MS.gene73339 | 0.818958 | 1.49E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene73339 | 0.853418 | 2.42E-61 | -1.69E-46 |
| MS.gene055741 | MS.gene73339 | 0.818778 | 1.64E-52 | -1.69E-46 |
| MS.gene055744 | MS.gene73339 | 0.817517 | 3.17E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene73339 | 0.801024 | 1.09E-48 | -1.69E-46 |
| MS.gene055909 | MS.gene73339 | 0.856195 | 3.79E-62 | -1.69E-46 |
| MS.gene055911 | MS.gene73339 | 0.85676 | 2.59E-62 | -1.69E-46 |
| MS.gene055941 | MS.gene73339 | 0.82328 | 1.51E-53 | -1.69E-46 |
| MS.gene05601 | MS.gene73339 | 0.826798 | 2.23E-54 | -1.69E-46 |
| MS.gene056166 | MS.gene73339 | 0.86017 | 2.49E-63 | -1.69E-46 |
| MS.gene056346 | MS.gene73339 | 0.805983 | 1.03E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene73339 | 0.804804 | 1.81E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene73339 | 0.849885 | 2.43E-60 | -1.69E-46 |
| MS.gene056448 | MS.gene73339 | 0.834591 | 2.74E-56 | -1.69E-46 |
| MS.gene056487 | MS.gene73339 | 0.816373 | 5.72E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene73339 | 0.831129 | 1.99E-55 | -1.69E-46 |
| MS.gene056510 | MS.gene73339 | 0.80434 | 2.26E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene73339 | 0.851809 | 6.97E-61 | -1.69E-46 |
| MS.gene056657 | MS.gene73339 | 0.822587 | 2.19E-53 | -1.69E-46 |
| MS.gene056942 | MS.gene73339 | 0.82679 | 2.24E-54 | -1.69E-46 |
| MS.gene057019 | MS.gene73339 | 0.831872 | 1.30E-55 | -1.69E-46 |
| MS.gene057076 | MS.gene73339 | 0.875353 | 3.29E-68 | -1.69E-46 |
| MS.gene057086 | MS.gene73339 | 0.844604 | 6.82E-59 | -1.69E-46 |
| MS.gene057331 | MS.gene73339 | 0.810492 | 1.12E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene73339 | 0.82418 | 9.28E-54 | -1.69E-46 |
| MS.gene057473 | MS.gene73339 | -0.806564 | 7.74E-50 | -1.69E-46 |
| MS.gene057734 | MS.gene73339 | 0.824999 | 5.95E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene73339 | 0.827079 | 1.91E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene73339 | 0.832749 | 7.91E-56 | -1.69E-46 |
| MS.gene057876 | MS.gene73339 | 0.817482 | 3.22E-52 | -1.69E-46 |
| MS.gene05787 | MS.gene73339 | 0.804668 | 1.93E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene73339 | 0.805944 | 1.05E-49 | -1.69E-46 |
| MS.gene058120 | MS.gene73339 | 0.801173 | 1.02E-48 | -1.69E-46 |
| MS.gene058130 | MS.gene73339 | 0.840908 | 6.55E-58 | -1.69E-46 |
| MS.gene058338 | MS.gene73339 | 0.824459 | 7.98E-54 | -1.69E-46 |
| MS.gene05837 | MS.gene73339 | 0.814601 | 1.42E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene73339 | 0.811674 | 6.22E-51 | -1.69E-46 |
| MS.gene05883 | MS.gene73339 | 0.812486 | 4.14E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene73339 | 0.818046 | 2.40E-52 | -1.69E-46 |
| MS.gene058948 | MS.gene73339 | 0.802455 | 5.56E-49 | -1.69E-46 |
| MS.gene058995 | MS.gene73339 | 0.820322 | 7.29E-53 | -1.69E-46 |
| MS.gene059023 | MS.gene73339 | 0.801012 | 1.10E-48 | -1.69E-46 |
| MS.gene059129 | MS.gene73339 | 0.817047 | 4.04E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene73339 | 0.811373 | 7.23E-51 | -1.69E-46 |
| MS.gene059305 | MS.gene73339 | 0.803021 | 4.25E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene73339 | 0.800872 | 1.18E-48 | -1.69E-46 |
| MS.gene059366 | MS.gene73339 | 0.800744 | 1.25E-48 | -1.69E-46 |
| MS.gene059367 | MS.gene73339 | 0.866488 | 2.75E-65 | -1.69E-46 |
| MS.gene059368 | MS.gene73339 | 0.86773 | 1.10E-65 | -1.69E-46 |
| MS.gene059455 | MS.gene73339 | 0.828586 | 8.28E-55 | -1.69E-46 |
| MS.gene059674 | MS.gene73339 | 0.849617 | 2.88E-60 | -1.69E-46 |
| MS.gene059680 | MS.gene73339 | 0.848241 | 6.95E-60 | -1.69E-46 |
| MS.gene059711 | MS.gene73339 | 0.860563 | 1.89E-63 | -1.69E-46 |
| MS.gene059718 | MS.gene73339 | 0.823924 | 1.07E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene73339 | 0.823842 | 1.11E-53 | -1.69E-46 |
| MS.gene059902 | MS.gene73339 | 0.813558 | 2.41E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene73339 | 0.824135 | 9.51E-54 | -1.69E-46 |
| MS.gene060482 | MS.gene73339 | 0.871372 | 7.18E-67 | -1.69E-46 |
| MS.gene060778 | MS.gene73339 | 0.866136 | 3.55E-65 | -1.69E-46 |
| MS.gene06077 | MS.gene73339 | 0.804016 | 2.65E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene73339 | 0.816441 | 5.52E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene73339 | 0.859565 | 3.79E-63 | -1.69E-46 |
| MS.gene060837 | MS.gene73339 | 0.870886 | 1.04E-66 | -1.69E-46 |
| MS.gene060982 | MS.gene73339 | 0.810819 | 9.53E-51 | -1.69E-46 |
| MS.gene061134 | MS.gene73339 | 0.813789 | 2.14E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023496 | MS.gene73339 | PPI |
| MS.gene08966 | MS.gene73339 | PPI |
| MS.gene08811 | MS.gene73339 | PPI |
| MS.gene09279 | MS.gene73339 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73339.t1 | MTR_2g036780 | 93.891 | 442 | 27 | 0 | 1 | 442 | 1 | 442 | 0.0 | 861 |
| MS.gene73339.t1 | MTR_3g100150 | 77.027 | 444 | 96 | 3 | 1 | 441 | 1 | 441 | 0.0 | 702 |
| MS.gene73339.t1 | MTR_1g035890 | 72.374 | 438 | 116 | 3 | 1 | 436 | 1 | 435 | 0.0 | 640 |
| MS.gene73339.t1 | MTR_8g081600 | 35.294 | 272 | 159 | 6 | 164 | 429 | 1 | 261 | 1.22e-41 | 149 |
| MS.gene73339.t1 | MTR_8g081480 | 51.145 | 131 | 62 | 2 | 16 | 145 | 16 | 145 | 2.29e-35 | 128 |
| MS.gene73339.t1 | MTR_7g114960 | 25.112 | 446 | 271 | 17 | 19 | 424 | 15 | 437 | 1.15e-26 | 112 |
| MS.gene73339.t1 | MTR_1g011660 | 26.014 | 419 | 267 | 14 | 35 | 424 | 27 | 431 | 6.26e-24 | 103 |
| MS.gene73339.t1 | MTR_8g079970 | 24.910 | 277 | 168 | 9 | 19 | 276 | 10 | 265 | 6.08e-16 | 80.1 |
| MS.gene73339.t1 | MTR_8g079950 | 28.916 | 166 | 110 | 4 | 19 | 180 | 10 | 171 | 1.45e-13 | 72.8 |
| MS.gene73339.t1 | MTR_8g096530 | 25.735 | 272 | 173 | 9 | 18 | 273 | 13 | 271 | 1.62e-13 | 72.4 |
| MS.gene73339.t1 | MTR_4g127650 | 25.275 | 273 | 161 | 9 | 31 | 276 | 27 | 283 | 1.30e-12 | 69.7 |
| MS.gene73339.t1 | MTR_7g086000 | 25.000 | 404 | 246 | 12 | 66 | 425 | 60 | 450 | 1.34e-12 | 69.7 |
| MS.gene73339.t1 | MTR_3g026950 | 26.950 | 282 | 169 | 9 | 19 | 275 | 9 | 278 | 1.35e-12 | 69.7 |
| MS.gene73339.t1 | MTR_2g064495 | 23.188 | 276 | 181 | 9 | 18 | 276 | 8 | 269 | 1.85e-12 | 69.3 |
| MS.gene73339.t1 | MTR_2g105330 | 24.444 | 270 | 182 | 10 | 19 | 276 | 10 | 269 | 2.50e-12 | 68.9 |
| MS.gene73339.t1 | MTR_3g086020 | 24.427 | 262 | 152 | 12 | 20 | 268 | 13 | 241 | 6.70e-12 | 67.4 |
| MS.gene73339.t1 | MTR_4g007540 | 24.815 | 270 | 187 | 9 | 16 | 275 | 6 | 269 | 7.67e-12 | 67.4 |
| MS.gene73339.t1 | MTR_4g097090 | 23.294 | 425 | 256 | 17 | 31 | 404 | 26 | 431 | 8.34e-12 | 67.4 |
| MS.gene73339.t1 | MTR_5g026320 | 25.207 | 242 | 166 | 8 | 34 | 269 | 40 | 272 | 9.90e-12 | 67.0 |
| MS.gene73339.t1 | MTR_7g084940 | 23.729 | 236 | 171 | 5 | 46 | 272 | 47 | 282 | 1.11e-11 | 67.0 |
| MS.gene73339.t1 | MTR_7g114520 | 21.117 | 412 | 287 | 14 | 50 | 436 | 50 | 448 | 5.21e-11 | 64.7 |
| MS.gene73339.t1 | MTR_8g079980 | 24.535 | 269 | 170 | 11 | 20 | 272 | 11 | 262 | 6.79e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73339.t1 | AT4G24510 | 39.908 | 436 | 222 | 13 | 7 | 425 | 1 | 413 | 2.12e-101 | 309 |
| MS.gene73339.t1 | AT4G13840 | 37.441 | 422 | 250 | 8 | 11 | 430 | 13 | 422 | 1.19e-92 | 286 |
| MS.gene73339.t1 | AT3G23840 | 37.558 | 434 | 245 | 11 | 1 | 430 | 1 | 412 | 7.21e-92 | 284 |
| MS.gene73339.t1 | AT4G29250 | 23.843 | 432 | 274 | 18 | 23 | 419 | 23 | 434 | 1.60e-18 | 88.2 |
| MS.gene73339.t1 | AT2G19070 | 25.170 | 294 | 192 | 8 | 19 | 291 | 11 | 297 | 1.83e-17 | 84.7 |
| MS.gene73339.t1 | AT3G48720 | 30.345 | 145 | 96 | 4 | 47 | 186 | 41 | 185 | 6.94e-13 | 70.5 |
| MS.gene73339.t1 | AT5G41040 | 25.194 | 258 | 166 | 7 | 30 | 270 | 49 | 296 | 3.28e-12 | 68.6 |
| MS.gene73339.t1 | AT5G41040 | 25.292 | 257 | 165 | 7 | 30 | 269 | 33 | 279 | 3.59e-12 | 68.6 |
| MS.gene73339.t1 | AT5G63560 | 25.681 | 257 | 172 | 10 | 30 | 276 | 25 | 272 | 8.98e-12 | 67.0 |
| MS.gene73339.t1 | AT1G24430 | 23.827 | 277 | 185 | 10 | 33 | 303 | 27 | 283 | 1.17e-11 | 66.6 |
| MS.gene73339.t1 | AT5G47950 | 26.908 | 249 | 156 | 10 | 34 | 277 | 28 | 255 | 1.48e-11 | 66.6 |
| MS.gene73339.t1 | AT1G24420 | 21.942 | 278 | 180 | 8 | 20 | 281 | 13 | 269 | 3.05e-11 | 65.5 |
| MS.gene73339.t1 | AT1G24420 | 21.942 | 278 | 180 | 8 | 20 | 281 | 13 | 269 | 3.05e-11 | 65.5 |
Find 85 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCATGTGAAGAGATTT+TGG | 0.217190 | 2.4:+52702878 | None:intergenic |
| AGGAGGAGGTGCTTCTAAAT+TGG | 0.232854 | 2.4:+52705222 | None:intergenic |
| AAATTATTTCAGCTATGATA+TGG | 0.259708 | 2.4:-52702655 | MS.gene73339:CDS |
| AAAACGTTGTTGGGGAATAT+TGG | 0.260857 | 2.4:-52702793 | MS.gene73339:CDS |
| TTATTACCTTCATCATCTTC+TGG | 0.260901 | 2.4:+52702236 | None:intergenic |
| TCTTCGCCTCGTGGTGTTGC+TGG | 0.266971 | 2.4:+52705172 | None:intergenic |
| TCAACAAATCCATGTAGTTT+AGG | 0.289089 | 2.4:+52705134 | None:intergenic |
| AAATCACAATTCGCCATAAT+AGG | 0.291121 | 2.4:+52702302 | None:intergenic |
| ACACCACGAGGCGAAGAAAA+AGG | 0.330904 | 2.4:-52705166 | MS.gene73339:CDS |
| TTCGATTCTGAAGCTGTTCA+AGG | 0.344410 | 2.4:-52705079 | MS.gene73339:CDS |
| GATAAACGGTCTACCGGATT+CGG | 0.346628 | 2.4:+52704976 | None:intergenic |
| CTCAACAATATGTCATTTGT+TGG | 0.348079 | 2.4:+52702536 | None:intergenic |
| TTCAGAATCGAAGAAATAAA+TGG | 0.359775 | 2.4:+52705090 | None:intergenic |
| ATTGGTATTGAAATTGATAT+TGG | 0.366519 | 2.4:+52702691 | None:intergenic |
| TTTACGGTGTAAAGCTTAAT+GGG | 0.367625 | 2.4:-52702331 | MS.gene73339:CDS |
| GATTTGTACTCGCATGTTGC+CGG | 0.368832 | 2.4:-52705013 | MS.gene73339:CDS |
| TTCTAGCCAACTTCACCATT+TGG | 0.381913 | 2.4:-52702723 | MS.gene73339:CDS |
| GAAGATGATGAAGGTAATAA+TGG | 0.382087 | 2.4:-52702233 | MS.gene73339:CDS |
| AACACCGATGTTTCCACTGC+TGG | 0.384086 | 2.4:-52705035 | MS.gene73339:CDS |
| TAATGGGAAGAAACCTATTA+TGG | 0.385797 | 2.4:-52702315 | MS.gene73339:CDS |
| AGCTAGTATGTGACTCCATT+TGG | 0.386476 | 2.4:+52702913 | None:intergenic |
| ACAAAATTGGATAGGAATTG+AGG | 0.389132 | 2.4:+52702845 | None:intergenic |
| GACTCTCTGTAGGACTAAGT+TGG | 0.389788 | 2.4:-52702979 | MS.gene73339:CDS |
| TTTCAAGCTTATATTTCAAC+TGG | 0.396814 | 2.4:+52702171 | None:intergenic |
| GTTGAAATTCTTGAACTTGA+AGG | 0.399551 | 2.4:+52705202 | None:intergenic |
| ATTGGATAGGAATTGAGGTT+TGG | 0.406081 | 2.4:+52702850 | None:intergenic |
| GCATCATTGCATTTGATAAA+CGG | 0.409324 | 2.4:+52704962 | None:intergenic |
| AATATAAGCTTGAAAGAGAA+TGG | 0.417995 | 2.4:-52702163 | MS.gene73339:CDS |
| CCTTCATCATCTTCTGGTCC+TGG | 0.425127 | 2.4:+52702242 | None:intergenic |
| TCAACAATATGTCATTTGTT+GGG | 0.429902 | 2.4:+52702537 | None:intergenic |
| TTAGATTTAGTGAATCTGAT+TGG | 0.430126 | 2.4:-52702473 | MS.gene73339:CDS |
| GGGTGATCAAGGAGTTGTTT+TGG | 0.437631 | 2.4:-52702270 | MS.gene73339:CDS |
| CAGTTCACGTGTTTCAAATG+TGG | 0.438540 | 2.4:-52703004 | MS.gene73339:CDS |
| TCTAATATATTATATTCGTC+CGG | 0.438576 | 2.4:+52702491 | None:intergenic |
| ATGATAACAGTTTCATTGCC+AGG | 0.440593 | 2.4:-52702206 | MS.gene73339:CDS |
| ATATAAGCTTGAAAGAGAAT+GGG | 0.453313 | 2.4:-52702162 | MS.gene73339:CDS |
| CTAAGTTGGGCTCACATCCT+TGG | 0.455761 | 2.4:-52702965 | MS.gene73339:CDS |
| AACTGGTCAAGTTCTTTCCC+TGG | 0.458794 | 2.4:+52702188 | None:intergenic |
| GGAGGAGGTGCTTCTAAATT+GGG | 0.460785 | 2.4:+52705223 | None:intergenic |
| AATTGAGGTTTGGCAAGACT+TGG | 0.469405 | 2.4:+52702860 | None:intergenic |
| GTGATAAAACGTTGAGAGAA+TGG | 0.471992 | 2.4:-52704913 | MS.gene73339:CDS |
| TGATGAAGCTTCACTATGTC+CGG | 0.472252 | 2.4:-52705114 | MS.gene73339:CDS |
| ACTCTCTGTAGGACTAAGTT+GGG | 0.477168 | 2.4:-52702978 | MS.gene73339:CDS |
| AATTTCAAAATACTCAGTAT+TGG | 0.478698 | 2.4:+52702673 | None:intergenic |
| TTACGCGGTGTGGGTGATCA+AGG | 0.490087 | 2.4:-52702281 | MS.gene73339:CDS |
| AGTTCACGTGTTTCAAATGT+GGG | 0.497596 | 2.4:-52703003 | MS.gene73339:CDS |
| GCATTTGATAAACGGTCTAC+CGG | 0.498687 | 2.4:+52704970 | None:intergenic |
| AATTAATGAGAATTATGCAT+TGG | 0.501040 | 2.4:-52702441 | MS.gene73339:CDS |
| CTTGTTCATGATCATGTGCT+TGG | 0.507531 | 2.4:-52704860 | MS.gene73339:CDS |
| AAAGTTAACATTTGTAGACT+TGG | 0.520459 | 2.4:-52702366 | MS.gene73339:CDS |
| CGAGTTAGAATAGCCGAATC+CGG | 0.533458 | 2.4:-52704989 | MS.gene73339:CDS |
| TGATAACAGTTTCATTGCCA+GGG | 0.539695 | 2.4:-52702205 | MS.gene73339:CDS |
| AAGAGGAGACATTGGACCTA+GGG | 0.554395 | 2.4:-52702615 | MS.gene73339:CDS |
| CTAATATATTATATTCGTCC+GGG | 0.554744 | 2.4:+52702492 | None:intergenic |
| GTGCATATTGTCACAACCCT+AGG | 0.555173 | 2.4:+52702599 | None:intergenic |
| TTCGGCTATTCTAACTCGAC+CGG | 0.556767 | 2.4:+52704994 | None:intergenic |
| AATCGAAGAAATAAATGGAC+CGG | 0.556767 | 2.4:+52705095 | None:intergenic |
| AATTGAAACAAATTTGCGCC+CGG | 0.557494 | 2.4:-52702510 | MS.gene73339:CDS |
| AAATGTATAGCACAAATAAG+AGG | 0.564021 | 2.4:-52702632 | MS.gene73339:CDS |
| TAAAACGTTGAGAGAATGGT+TGG | 0.567947 | 2.4:-52704909 | MS.gene73339:CDS |
| ATTCTTGAACTTGAAGGAGG+AGG | 0.570601 | 2.4:+52705208 | None:intergenic |
| AATTGTGATTTACGCGGTGT+GGG | 0.572175 | 2.4:-52702290 | MS.gene73339:CDS |
| AAATGGAGTCACATACTAGC+TGG | 0.573672 | 2.4:-52702911 | MS.gene73339:CDS |
| GAAATTCTTGAACTTGAAGG+AGG | 0.575868 | 2.4:+52705205 | None:intergenic |
| TGAACACAACCTAAACTACA+TGG | 0.576874 | 2.4:-52705143 | MS.gene73339:CDS |
| TCGTGGTGTTGCTGGAACGA+CGG | 0.578514 | 2.4:+52705180 | None:intergenic |
| CGACTCCGCGATTCGTACAC+CGG | 0.579695 | 2.4:+52704940 | None:intergenic |
| TTTATCAAATGCAATGATGC+CGG | 0.584647 | 2.4:-52704959 | MS.gene73339:CDS |
| TAAGAGGAGACATTGGACCT+AGG | 0.589061 | 2.4:-52702616 | MS.gene73339:CDS |
| TATAAGCTTGAAAGAGAATG+GGG | 0.591321 | 2.4:-52702161 | MS.gene73339:CDS |
| AAATTGGTGGAGAAAGGTGA+TGG | 0.594488 | 2.4:-52702416 | MS.gene73339:CDS |
| GCACAAATAAGAGGAGACAT+TGG | 0.597118 | 2.4:-52702623 | MS.gene73339:CDS |
| GAATTGTGATTTACGCGGTG+TGG | 0.605283 | 2.4:-52702291 | MS.gene73339:CDS |
| TTCACGTGTTTCAAATGTGG+GGG | 0.607666 | 2.4:-52703001 | MS.gene73339:CDS |
| CCAGGACCAGAAGATGATGA+AGG | 0.612665 | 2.4:-52702242 | MS.gene73339:CDS |
| AAGCTGAAAATGCATCTCCA+AGG | 0.615348 | 2.4:+52702948 | None:intergenic |
| GTGATGTGAAATGTGTGACT+AGG | 0.619426 | 2.4:+52702746 | None:intergenic |
| TGATGTGAAATGTGTGACTA+GGG | 0.628235 | 2.4:+52702747 | None:intergenic |
| GTTCACGTGTTTCAAATGTG+GGG | 0.631051 | 2.4:-52703002 | MS.gene73339:CDS |
| GGTGGAGAAAGGTGATGGAA+AGG | 0.637883 | 2.4:-52702411 | MS.gene73339:CDS |
| TGCGAGTACAAATCCAGCAG+TGG | 0.640512 | 2.4:+52705022 | None:intergenic |
| AAATCCAGCAGTGGAAACAT+CGG | 0.641078 | 2.4:+52705031 | None:intergenic |
| TGATGCCGGTGTACGAATCG+CGG | 0.643478 | 2.4:-52704945 | MS.gene73339:CDS |
| GTCGTTCCAGCAACACCACG+AGG | 0.712127 | 2.4:-52705178 | MS.gene73339:CDS |
| ATGGCGAATTGTGATTTACG+CGG | 0.715542 | 2.4:-52702296 | MS.gene73339:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATGTATGTTATAAAT+GGG | - | chr2.4:52702831-52702850 | MS.gene73339:CDS | 10.0% |
| !! | TATATTATTATATGATTGAT+CGG | - | chr2.4:52704284-52704303 | MS.gene73339:intron | 10.0% |
| !!! | TATTGATAAATTGAAATTTT+AGG | - | chr2.4:52702637-52702656 | MS.gene73339:CDS | 10.0% |
| !! | AATAATATGATGAAAAAAGT+AGG | + | chr2.4:52702603-52702622 | None:intergenic | 15.0% |
| !! | ATTTCAATTTATCAATAACA+CGG | + | chr2.4:52702634-52702653 | None:intergenic | 15.0% |
| !! | CAATGTAAAATATTAGAATT+TGG | + | chr2.4:52702907-52702926 | None:intergenic | 15.0% |
| !! | GATATTATGTATGTTATAAA+TGG | - | chr2.4:52702830-52702849 | MS.gene73339:CDS | 15.0% |
| !! | GTTTGATATATAAAGATAAT+CGG | + | chr2.4:52702774-52702793 | None:intergenic | 15.0% |
| !! | TAAAACCTATTTACTTAAAT+AGG | + | chr2.4:52703927-52703946 | None:intergenic | 15.0% |
| !! | TATTATGTATGTTATAAATG+GGG | - | chr2.4:52702832-52702851 | MS.gene73339:CDS | 15.0% |
| !!! | AAAACAATATTTCTATTATG+TGG | + | chr2.4:52704125-52704144 | None:intergenic | 15.0% |
| !!! | AAACAATATTTCTATTATGT+GGG | + | chr2.4:52704124-52704143 | None:intergenic | 15.0% |
| !!! | ATACTCAAAATTTCTTTTTT+TGG | + | chr2.4:52704209-52704228 | None:intergenic | 15.0% |
| !!! | TAAATTGAAATTTTAGGTTT+AGG | - | chr2.4:52702643-52702662 | MS.gene73339:CDS | 15.0% |
| !!! | TACAATAGTATTAATTTGAA+GGG | + | chr2.4:52702945-52702964 | None:intergenic | 15.0% |
| !!! | TTACAATAGTATTAATTTGA+AGG | + | chr2.4:52702946-52702965 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTTTTTCTTTTAG+AGG | - | chr2.4:52704138-52704157 | MS.gene73339:intron | 15.0% |
| !! | AAAGAATTAATTCACAAGTA+GGG | + | chr2.4:52704053-52704072 | None:intergenic | 20.0% |
| !! | AAATTATTTCAGCTATGATA+TGG | - | chr2.4:52704710-52704729 | MS.gene73339:intron | 20.0% |
| !! | AATTAATGAGAATTATGCAT+TGG | - | chr2.4:52704924-52704943 | MS.gene73339:CDS | 20.0% |
| !! | AATTTCAAAATACTCAGTAT+TGG | + | chr2.4:52704695-52704714 | None:intergenic | 20.0% |
| !! | ACTAACTTATGAAATATCAA+AGG | - | chr2.4:52703555-52703574 | MS.gene73339:intron | 20.0% |
| !! | ATTATGTATGTTATAAATGG+GGG | - | chr2.4:52702833-52702852 | MS.gene73339:CDS | 20.0% |
| !! | ATTTGACCTTTATACTAAAT+CGG | - | chr2.4:52703032-52703051 | MS.gene73339:intron | 20.0% |
| !! | CTAACTTATGAAATATCAAA+GGG | - | chr2.4:52703556-52703575 | MS.gene73339:intron | 20.0% |
| !! | TAAACTTTAGTTAACACTTA+TGG | - | chr2.4:52704231-52704250 | MS.gene73339:intron | 20.0% |
| !! | TAATACTATTGTAAGTGAAT+CGG | - | chr2.4:52702952-52702971 | MS.gene73339:CDS | 20.0% |
| !! | TATCAAAAACAAAATTGGAT+AGG | + | chr2.4:52704531-52704550 | None:intergenic | 20.0% |
| !! | TCTAATATATTATATTCGTC+CGG | + | chr2.4:52704877-52704896 | None:intergenic | 20.0% |
| !! | TTAACACTAAGTTATAGTTT+GGG | + | chr2.4:52702719-52702738 | None:intergenic | 20.0% |
| !! | TTAATTTAACCTTACAACAT+CGG | + | chr2.4:52702878-52702897 | None:intergenic | 20.0% |
| !! | TTTAACACTAAGTTATAGTT+TGG | + | chr2.4:52702720-52702739 | None:intergenic | 20.0% |
| !!! | AACAATATTTCTATTATGTG+GGG | + | chr2.4:52704123-52704142 | None:intergenic | 20.0% |
| !!! | AAGGATGATTTTTTAGTATA+TGG | - | chr2.4:52704973-52704992 | MS.gene73339:CDS | 20.0% |
| !!! | AATGTTTAGGGTTTAAATTT+TGG | + | chr2.4:52703476-52703495 | None:intergenic | 20.0% |
| !!! | ATAATATCTCATCCAATTTT+GGG | + | chr2.4:52702818-52702837 | None:intergenic | 20.0% |
| !!! | ATACCTATAATTTTTGAAGT+AGG | + | chr2.4:52703763-52703782 | None:intergenic | 20.0% |
| !!! | ATTGGTATTGAAATTGATAT+TGG | + | chr2.4:52704677-52704696 | None:intergenic | 20.0% |
| !!! | CAAACATAGTATTTTTAAGT+GGG | + | chr2.4:52704258-52704277 | None:intergenic | 20.0% |
| !!! | TAAAGACATTTAAGATTTGT+TGG | - | chr2.4:52702736-52702755 | MS.gene73339:CDS | 20.0% |
| !!! | TCAAACATAGTATTTTTAAG+TGG | + | chr2.4:52704259-52704278 | None:intergenic | 20.0% |
| !!! | TGAAATCAACTAAAATTTTG+AGG | - | chr2.4:52704312-52704331 | MS.gene73339:intron | 20.0% |
| !!! | TTAAAACCGATTTAGTATAA+AGG | + | chr2.4:52703041-52703060 | None:intergenic | 20.0% |
| !!! | TTTCATAAGTTAGTTTAACA+AGG | + | chr2.4:52703549-52703568 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTTGATGGAAAT+GGG | + | chr2.4:52704556-52704575 | None:intergenic | 20.0% |
| !!! | TTTTTAAATCGGATATTGTA+AGG | + | chr2.4:52702312-52702331 | None:intergenic | 20.0% |
| ! | AAAAATTATAGGTATGAGTC+TGG | - | chr2.4:52703768-52703787 | MS.gene73339:intron | 25.0% |
| ! | AAAGTTAACATTTGTAGACT+TGG | - | chr2.4:52704999-52705018 | MS.gene73339:CDS | 25.0% |
| ! | AAATGTATAGCACAAATAAG+AGG | - | chr2.4:52704733-52704752 | MS.gene73339:intron | 25.0% |
| ! | AAGAATTAATTCACAAGTAG+GGG | + | chr2.4:52704052-52704071 | None:intergenic | 25.0% |
| ! | AATATAAGCTTGAAAGAGAA+TGG | - | chr2.4:52705202-52705221 | MS.gene73339:CDS | 25.0% |
| ! | ATATAAGCTTGAAAGAGAAT+GGG | - | chr2.4:52705203-52705222 | MS.gene73339:CDS | 25.0% |
| ! | ATCAAAAAAGAAAACGTTGT+TGG | - | chr2.4:52704562-52704581 | MS.gene73339:intron | 25.0% |
| ! | ATTACTAAAGGAAAGACAAA+AGG | + | chr2.4:52703625-52703644 | None:intergenic | 25.0% |
| ! | ATTATTATATGATTGATCGG+TGG | - | chr2.4:52704287-52704306 | MS.gene73339:intron | 25.0% |
| ! | CTAATATATTATATTCGTCC+GGG | + | chr2.4:52704876-52704895 | None:intergenic | 25.0% |
| ! | GAAAGAATTAATTCACAAGT+AGG | + | chr2.4:52704054-52704073 | None:intergenic | 25.0% |
| ! | GAATTATGCATTGGAAAAAT+TGG | - | chr2.4:52704933-52704952 | MS.gene73339:CDS | 25.0% |
| ! | GATAAGGAGTAAAATGTTTA+GGG | + | chr2.4:52703488-52703507 | None:intergenic | 25.0% |
| ! | GGGATTATCAAAAACAAAAT+TGG | + | chr2.4:52704536-52704555 | None:intergenic | 25.0% |
| ! | GTTCTGCAATTATAATTGTA+TGG | - | chr2.4:52703229-52703248 | MS.gene73339:intron | 25.0% |
| ! | TAACACTAAGTTATAGTTTG+GGG | + | chr2.4:52702718-52702737 | None:intergenic | 25.0% |
| ! | TATAAAGATAATCGGATAGA+AGG | + | chr2.4:52702766-52702785 | None:intergenic | 25.0% |
| ! | TCAAAAAAGAAAACGTTGTT+GGG | - | chr2.4:52704563-52704582 | MS.gene73339:intron | 25.0% |
| ! | TCTGACCTATTTAAGTAAAT+AGG | - | chr2.4:52703919-52703938 | MS.gene73339:intron | 25.0% |
| ! | TGACCTACTTCAAAAATTAT+AGG | - | chr2.4:52703757-52703776 | MS.gene73339:intron | 25.0% |
| ! | TGTTGAGCTAAGAAATTAAA+GGG | + | chr2.4:52703511-52703530 | None:intergenic | 25.0% |
| ! | TTAGATTTAGTGAATCTGAT+TGG | - | chr2.4:52704892-52704911 | MS.gene73339:CDS | 25.0% |
| ! | TTCAGAATCGAAGAAATAAA+TGG | + | chr2.4:52702278-52702297 | None:intergenic | 25.0% |
| ! | TTGTTGAGCTAAGAAATTAA+AGG | + | chr2.4:52703512-52703531 | None:intergenic | 25.0% |
| ! | TTTCAAGCTTATATTTCAAC+TGG | + | chr2.4:52705197-52705216 | None:intergenic | 25.0% |
| !! | ACCTTTTTATTAAACGAGTT+AGG | - | chr2.4:52703964-52703983 | MS.gene73339:intron | 25.0% |
| !! | AGGAAGAAATATTGATTGTT+GGG | - | chr2.4:52704158-52704177 | MS.gene73339:intron | 25.0% |
| !! | ATTTTGAATTGCATAACTTG+GGG | - | chr2.4:52703144-52703163 | MS.gene73339:intron | 25.0% |
| !! | CATAATATCTCATCCAATTT+TGG | + | chr2.4:52702819-52702838 | None:intergenic | 25.0% |
| !! | CATTTTGAATTGCATAACTT+GGG | - | chr2.4:52703143-52703162 | MS.gene73339:intron | 25.0% |
| !! | TCAACAATATGTCATTTGTT+GGG | + | chr2.4:52704831-52704850 | None:intergenic | 25.0% |
| !!! | AAAACTTTTTTACATGGAGA+AGG | - | chr2.4:52703101-52703120 | MS.gene73339:intron | 25.0% |
| !!! | AAACATCGGTGTTTTTAAAT+CGG | + | chr2.4:52702323-52702342 | None:intergenic | 25.0% |
| !!! | AACAACGTTTTCTTTTTTGA+TGG | + | chr2.4:52704563-52704582 | None:intergenic | 25.0% |
| !!! | ATGGGTAAAACTTTTTTACA+TGG | - | chr2.4:52703095-52703114 | MS.gene73339:intron | 25.0% |
| !!! | CTTTTAATTTCATCACCAAA+TGG | - | chr2.4:52704437-52704456 | MS.gene73339:intron | 25.0% |
| !!! | GTTTTCTTTTTTGATGGAAA+TGG | + | chr2.4:52704557-52704576 | None:intergenic | 25.0% |
| !!! | TATAATTTTTGAAGTAGGTC+AGG | + | chr2.4:52703758-52703777 | None:intergenic | 25.0% |
| !!! | TATTGGTTGTTTTTACCAAA+TGG | + | chr2.4:52704660-52704679 | None:intergenic | 25.0% |
| AAATCACAATTCGCCATAAT+AGG | + | chr2.4:52705066-52705085 | None:intergenic | 30.0% | |
| AATCGAAGAAATAAATGGAC+CGG | + | chr2.4:52702273-52702292 | None:intergenic | 30.0% | |
| ACAAAATTGGATAGGAATTG+AGG | + | chr2.4:52704523-52704542 | None:intergenic | 30.0% | |
| ACTCGTTTAATAAAAAGGTC+AGG | + | chr2.4:52703963-52703982 | None:intergenic | 30.0% | |
| ATATTTCATTCAACTCCTCT+TGG | - | chr2.4:52703597-52703616 | MS.gene73339:intron | 30.0% | |
| ATTGTATGGTTCGTCTAATA+TGG | - | chr2.4:52703243-52703262 | MS.gene73339:intron | 30.0% | |
| ATTGTTAGTTAGTGGAAAGA+AGG | - | chr2.4:52702987-52703006 | MS.gene73339:CDS | 30.0% | |
| CAAAAAAGAAAACGTTGTTG+GGG | - | chr2.4:52704564-52704583 | MS.gene73339:intron | 30.0% | |
| CCAAGTTATGCAATTCAAAA+TGG | + | chr2.4:52703145-52703164 | None:intergenic | 30.0% | |
| CTAAGAAATTAAAGGGGATA+AGG | + | chr2.4:52703504-52703523 | None:intergenic | 30.0% | |
| GAAGATGATGAAGGTAATAA+TGG | - | chr2.4:52705132-52705151 | MS.gene73339:CDS | 30.0% | |
| GCATCATTGCATTTGATAAA+CGG | + | chr2.4:52702406-52702425 | None:intergenic | 30.0% | |
| GCCTAACTCGTTTAATAAAA+AGG | + | chr2.4:52703968-52703987 | None:intergenic | 30.0% | |
| GCTCTTAACACATATATAAG+TGG | + | chr2.4:52702796-52702815 | None:intergenic | 30.0% | |
| GGATAAGGAGTAAAATGTTT+AGG | + | chr2.4:52703489-52703508 | None:intergenic | 30.0% | |
| GTCTCACATTAGATGTTATA+TGG | - | chr2.4:52702671-52702690 | MS.gene73339:CDS | 30.0% | |
| GTCTGATCTGACATTTATAA+AGG | - | chr2.4:52703821-52703840 | MS.gene73339:intron | 30.0% | |
| GTTGAAATTCTTGAACTTGA+AGG | + | chr2.4:52702166-52702185 | None:intergenic | 30.0% | |
| GTTGAGCTAAGAAATTAAAG+GGG | + | chr2.4:52703510-52703529 | None:intergenic | 30.0% | |
| TAACATGCATTGTTAGTTAG+TGG | - | chr2.4:52702979-52702998 | MS.gene73339:CDS | 30.0% | |
| TAATGGGAAGAAACCTATTA+TGG | - | chr2.4:52705050-52705069 | MS.gene73339:CDS | 30.0% | |
| TACTTAAATAGGTCAGACTA+AGG | + | chr2.4:52703916-52703935 | None:intergenic | 30.0% | |
| TATAAGCTTGAAAGAGAATG+GGG | - | chr2.4:52705204-52705223 | MS.gene73339:CDS | 30.0% | |
| TCAACAAATCCATGTAGTTT+AGG | + | chr2.4:52702234-52702253 | None:intergenic | 30.0% | |
| TCTTTCATAGCAGAAAACTT+GGG | - | chr2.4:52704068-52704087 | MS.gene73339:intron | 30.0% | |
| TTATGCATTGGAAAAATTGG+TGG | - | chr2.4:52704936-52704955 | MS.gene73339:CDS | 30.0% | |
| TTATTACCTTCATCATCTTC+TGG | + | chr2.4:52705132-52705151 | None:intergenic | 30.0% | |
| TTCTTTCATAGCAGAAAACT+TGG | - | chr2.4:52704067-52704086 | MS.gene73339:intron | 30.0% | |
| TTTACGGTGTAAAGCTTAAT+GGG | - | chr2.4:52705034-52705053 | MS.gene73339:CDS | 30.0% | |
| TTTATCAAATGCAATGATGC+CGG | - | chr2.4:52702406-52702425 | MS.gene73339:CDS | 30.0% | |
| ! | AGAATTGCTACTTGTGAATA+AGG | - | chr2.4:52703690-52703709 | MS.gene73339:intron | 30.0% |
| ! | AGCCTATTTAAAGTCTAACT+CGG | + | chr2.4:52703990-52704009 | None:intergenic | 30.0% |
| ! | CCATTTTGAATTGCATAACT+TGG | - | chr2.4:52703142-52703161 | MS.gene73339:intron | 30.0% |
| ! | CTCAACAATATGTCATTTGT+TGG | + | chr2.4:52704832-52704851 | None:intergenic | 30.0% |
| ! | GAATTGCTACTTGTGAATAA+GGG | - | chr2.4:52703691-52703710 | MS.gene73339:intron | 30.0% |
| ! | GAGGAAGAAATATTGATTGT+TGG | - | chr2.4:52704157-52704176 | MS.gene73339:intron | 30.0% |
| ! | TATCAAAGGGCATAAACATA+AGG | - | chr2.4:52703569-52703588 | MS.gene73339:intron | 30.0% |
| ! | TATTTCTATTATGTGGGGTT+AGG | + | chr2.4:52704118-52704137 | None:intergenic | 30.0% |
| ! | TTCATTTTCAGCACATTTAG+AGG | + | chr2.4:52704806-52704825 | None:intergenic | 30.0% |
| ! | TTTTACGGTGTAAAGCTTAA+TGG | - | chr2.4:52705033-52705052 | MS.gene73339:CDS | 30.0% |
| ! | TTTTTACCAAATGGTGAAGT+TGG | + | chr2.4:52704651-52704670 | None:intergenic | 30.0% |
| !! | TTGGAAGAAGCTGATTTTTA+CGG | - | chr2.4:52705018-52705037 | MS.gene73339:CDS | 30.0% |
| AAAACGTTGTTGGGGAATAT+TGG | - | chr2.4:52704572-52704591 | MS.gene73339:intron | 35.0% | |
| AAAAGCCTATTAAGTCCATC+AGG | + | chr2.4:52703886-52703905 | None:intergenic | 35.0% | |
| AAAGATAATCGGATAGAAGG+TGG | + | chr2.4:52702763-52702782 | None:intergenic | 35.0% | |
| AAAGGAGAAAAAGCAAGATC+AGG | + | chr2.4:52702532-52702551 | None:intergenic | 35.0% | |
| AATTAATTCACAAGTAGGGG+TGG | + | chr2.4:52704049-52704068 | None:intergenic | 35.0% | |
| AATTGAAACAAATTTGCGCC+CGG | - | chr2.4:52704855-52704874 | MS.gene73339:CDS | 35.0% | |
| AGTGGAAAGAAGGTTTACAT+TGG | - | chr2.4:52702997-52703016 | MS.gene73339:CDS | 35.0% | |
| AGTTCACGTGTTTCAAATGT+GGG | - | chr2.4:52704362-52704381 | MS.gene73339:intron | 35.0% | |
| ATGACATTGTGATAAGCAAG+AGG | + | chr2.4:52703653-52703672 | None:intergenic | 35.0% | |
| ATGATAACAGTTTCATTGCC+AGG | - | chr2.4:52705159-52705178 | MS.gene73339:CDS | 35.0% | |
| ATGTGTTAAGAGCCCAAAAT+TGG | - | chr2.4:52702803-52702822 | MS.gene73339:CDS | 35.0% | |
| ATTAATTCACAAGTAGGGGT+GGG | + | chr2.4:52704048-52704067 | None:intergenic | 35.0% | |
| ATTGGATAGGAATTGAGGTT+TGG | + | chr2.4:52704518-52704537 | None:intergenic | 35.0% | |
| CATTGTGATATGCTGACAAT+GGG | - | chr2.4:52703077-52703096 | MS.gene73339:intron | 35.0% | |
| CTTTAAATAGGCTATGTCGT+AGG | - | chr2.4:52703997-52704016 | MS.gene73339:intron | 35.0% | |
| GAAATTCTTGAACTTGAAGG+AGG | + | chr2.4:52702163-52702182 | None:intergenic | 35.0% | |
| GTGATAAAACGTTGAGAGAA+TGG | - | chr2.4:52702452-52702471 | MS.gene73339:CDS | 35.0% | |
| GTGGAAAGAAGGTTTACATT+GGG | - | chr2.4:52702998-52703017 | MS.gene73339:CDS | 35.0% | |
| TAAAACGTTGAGAGAATGGT+TGG | - | chr2.4:52702456-52702475 | MS.gene73339:CDS | 35.0% | |
| TATTAAGCTTTCAGGCTTTC+AGG | + | chr2.4:52703857-52703876 | None:intergenic | 35.0% | |
| TCATTGTGATATGCTGACAA+TGG | - | chr2.4:52703076-52703095 | MS.gene73339:intron | 35.0% | |
| TGAAAGCCTGAAAGCTTAAT+AGG | - | chr2.4:52703856-52703875 | MS.gene73339:intron | 35.0% | |
| TGAACACAACCTAAACTACA+TGG | - | chr2.4:52702222-52702241 | MS.gene73339:CDS | 35.0% | |
| TGACATTGTGATAAGCAAGA+GGG | + | chr2.4:52703652-52703671 | None:intergenic | 35.0% | |
| TGATAACAGTTTCATTGCCA+GGG | - | chr2.4:52705160-52705179 | MS.gene73339:CDS | 35.0% | |
| TGATGTGAAATGTGTGACTA+GGG | + | chr2.4:52704621-52704640 | None:intergenic | 35.0% | |
| TGGAAAGAAGGTTTACATTG+GGG | - | chr2.4:52702999-52703018 | MS.gene73339:CDS | 35.0% | |
| TTGGAAAAATTGGTGGAGAA+AGG | - | chr2.4:52704943-52704962 | MS.gene73339:CDS | 35.0% | |
| TTGTGAATAAGGGTGGAAAT+AGG | - | chr2.4:52703701-52703720 | MS.gene73339:intron | 35.0% | |
| !! | CATGTGAAGAGATTTTGGTA+GGG | + | chr2.4:52704485-52704504 | None:intergenic | 35.0% |
| !!! | TGATCTTGCTTTTTCTCCTT+TGG | - | chr2.4:52702531-52702550 | MS.gene73339:CDS | 35.0% |
| !!! | TTCTCCTTTGGTTTTTGTCA+AGG | - | chr2.4:52702543-52702562 | MS.gene73339:CDS | 35.0% |
| AAATCCAGCAGTGGAAACAT+CGG | + | chr2.4:52702337-52702356 | None:intergenic | 40.0% | |
| AAATGGAGTCACATACTAGC+TGG | - | chr2.4:52704454-52704473 | MS.gene73339:intron | 40.0% | |
| AAATTGGTGGAGAAAGGTGA+TGG | - | chr2.4:52704949-52704968 | MS.gene73339:CDS | 40.0% | |
| AAGCTGAAAATGCATCTCCA+AGG | + | chr2.4:52704420-52704439 | None:intergenic | 40.0% | |
| AATTGAGGTTTGGCAAGACT+TGG | + | chr2.4:52704508-52704527 | None:intergenic | 40.0% | |
| AATTGTGATTTACGCGGTGT+GGG | - | chr2.4:52705075-52705094 | MS.gene73339:CDS | 40.0% | |
| ACTCTCTGTAGGACTAAGTT+GGG | - | chr2.4:52704387-52704406 | MS.gene73339:intron | 40.0% | |
| AGCTAGTATGTGACTCCATT+TGG | + | chr2.4:52704455-52704474 | None:intergenic | 40.0% | |
| ATGGCGAATTGTGATTTACG+CGG | - | chr2.4:52705069-52705088 | MS.gene73339:CDS | 40.0% | |
| ATTCTTGAACTTGAAGGAGG+AGG | + | chr2.4:52702160-52702179 | None:intergenic | 40.0% | |
| CAGTTCACGTGTTTCAAATG+TGG | - | chr2.4:52704361-52704380 | MS.gene73339:intron | 40.0% | |
| CCTTACAAACCGATGTTGTA+AGG | - | chr2.4:52702866-52702885 | MS.gene73339:CDS | 40.0% | |
| CGTACCTTGACAAAAACCAA+AGG | + | chr2.4:52702550-52702569 | None:intergenic | 40.0% | |
| CTTGTTCATGATCATGTGCT+TGG | - | chr2.4:52702505-52702524 | MS.gene73339:CDS | 40.0% | |
| GAAAGACAAAAGGTTCCAAG+AGG | + | chr2.4:52703615-52703634 | None:intergenic | 40.0% | |
| GCACAAATAAGAGGAGACAT+TGG | - | chr2.4:52704742-52704761 | MS.gene73339:intron | 40.0% | |
| GCATTTGATAAACGGTCTAC+CGG | + | chr2.4:52702398-52702417 | None:intergenic | 40.0% | |
| GGCCGAGTTAGACTTTAAAT+AGG | - | chr2.4:52703985-52704004 | MS.gene73339:intron | 40.0% | |
| GTGATGTGAAATGTGTGACT+AGG | + | chr2.4:52704622-52704641 | None:intergenic | 40.0% | |
| GTTCACGTGTTTCAAATGTG+GGG | - | chr2.4:52704363-52704382 | MS.gene73339:intron | 40.0% | |
| TCTGGTCTATTACTCGTCAT+AGG | - | chr2.4:52703786-52703805 | MS.gene73339:intron | 40.0% | |
| TGATGAAGCTTCACTATGTC+CGG | - | chr2.4:52702251-52702270 | MS.gene73339:CDS | 40.0% | |
| TTCACGTGTTTCAAATGTGG+GGG | - | chr2.4:52704364-52704383 | MS.gene73339:intron | 40.0% | |
| TTCTAGCCAACTTCACCATT+TGG | - | chr2.4:52704642-52704661 | MS.gene73339:intron | 40.0% | |
| ! | CAAGAGGGCATGATTACTAA+AGG | + | chr2.4:52703637-52703656 | None:intergenic | 40.0% |
| ! | CTTGGCATGTGAAGAGATTT+TGG | + | chr2.4:52704490-52704509 | None:intergenic | 40.0% |
| ! | TCGTCATAGGCTCATTTTCA+AGG | - | chr2.4:52703799-52703818 | MS.gene73339:intron | 40.0% |
| ! | TTGCTACTTGTGAATAAGGG+TGG | - | chr2.4:52703694-52703713 | MS.gene73339:intron | 40.0% |
| !! | CCTTACAACATCGGTTTGTA+AGG | + | chr2.4:52702869-52702888 | None:intergenic | 40.0% |
| !! | GCATGTGAAGAGATTTTGGT+AGG | + | chr2.4:52704486-52704505 | None:intergenic | 40.0% |
| !! | TTCGATTCTGAAGCTGTTCA+AGG | - | chr2.4:52702286-52702305 | MS.gene73339:CDS | 40.0% |
| !!! | TTTTGAAGTAGGTCAGGCTT+AGG | + | chr2.4:52703752-52703771 | None:intergenic | 40.0% |
| AACTGGTCAAGTTCTTTCCC+TGG | + | chr2.4:52705180-52705199 | None:intergenic | 45.0% | |
| AAGAGGAGACATTGGACCTA+GGG | - | chr2.4:52704750-52704769 | MS.gene73339:intron | 45.0% | |
| AGCTTAATAGGTCAGCCTGA+TGG | - | chr2.4:52703868-52703887 | MS.gene73339:intron | 45.0% | |
| CGAGTTAGAATAGCCGAATC+CGG | - | chr2.4:52702376-52702395 | MS.gene73339:CDS | 45.0% | |
| GAATTGTGATTTACGCGGTG+TGG | - | chr2.4:52705074-52705093 | MS.gene73339:CDS | 45.0% | |
| GACTCTCTGTAGGACTAAGT+TGG | - | chr2.4:52704386-52704405 | MS.gene73339:intron | 45.0% | |
| GATAAACGGTCTACCGGATT+CGG | + | chr2.4:52702392-52702411 | None:intergenic | 45.0% | |
| GATTTGTACTCGCATGTTGC+CGG | - | chr2.4:52702352-52702371 | MS.gene73339:CDS | 45.0% | |
| GGCTGACCTATTAAGCTTTC+AGG | + | chr2.4:52703865-52703884 | None:intergenic | 45.0% | |
| GTGCATATTGTCACAACCCT+AGG | + | chr2.4:52704769-52704788 | None:intergenic | 45.0% | |
| TAAGAGGAGACATTGGACCT+AGG | - | chr2.4:52704749-52704768 | MS.gene73339:intron | 45.0% | |
| TTCGGCTATTCTAACTCGAC+CGG | + | chr2.4:52702374-52702393 | None:intergenic | 45.0% | |
| ! | GGGTGATCAAGGAGTTGTTT+TGG | - | chr2.4:52705095-52705114 | MS.gene73339:CDS | 45.0% |
| !! | AGGAGGAGGTGCTTCTAAAT+TGG | + | chr2.4:52702146-52702165 | None:intergenic | 45.0% |
| !! | GGAGGAGGTGCTTCTAAATT+GGG | + | chr2.4:52702145-52702164 | None:intergenic | 45.0% |
| !! | GTCAGCCTGATGGACTTAAT+AGG | - | chr2.4:52703878-52703897 | MS.gene73339:intron | 45.0% |
| !!! | GGAGTTGTTTTGGTTCTTCC+AGG | - | chr2.4:52705105-52705124 | MS.gene73339:CDS | 45.0% |
| !! | AATTTGTAAAAAAAAAAAAA+AGG | + | chr2.4:52703203-52703222 | None:intergenic | 5.0% |
| AAATGTGGGGGACTCTCTGT+AGG | - | chr2.4:52704376-52704395 | MS.gene73339:intron | 50.0% | |
| AACACCGATGTTTCCACTGC+TGG | - | chr2.4:52702330-52702349 | MS.gene73339:CDS | 50.0% | |
| ACACCACGAGGCGAAGAAAA+AGG | - | chr2.4:52702199-52702218 | MS.gene73339:CDS | 50.0% | |
| AGGGTGGAAATAGGCTAGAC+CGG | - | chr2.4:52703710-52703729 | MS.gene73339:intron | 50.0% | |
| CCAGGACCAGAAGATGATGA+AGG | - | chr2.4:52705123-52705142 | MS.gene73339:CDS | 50.0% | |
| CCTTCATCATCTTCTGGTCC+TGG | + | chr2.4:52705126-52705145 | None:intergenic | 50.0% | |
| TCAGGCTTTCAGGCTTCATC+AGG | + | chr2.4:52703847-52703866 | None:intergenic | 50.0% | |
| TGCGAGTACAAATCCAGCAG+TGG | + | chr2.4:52702346-52702365 | None:intergenic | 50.0% | |
| ! | CTAAGTTGGGCTCACATCCT+TGG | - | chr2.4:52704400-52704419 | MS.gene73339:intron | 50.0% |
| ! | TCACCTTTTTCTTCGCCTCG+TGG | + | chr2.4:52702205-52702224 | None:intergenic | 50.0% |
| !! | GGTGGAGAAAGGTGATGGAA+AGG | - | chr2.4:52704954-52704973 | MS.gene73339:CDS | 50.0% |
| AACATGCCAGATCACCCGAC+AGG | + | chr2.4:52704025-52704044 | None:intergenic | 55.0% | |
| ACATGCCAGATCACCCGACA+GGG | + | chr2.4:52704024-52704043 | None:intergenic | 55.0% | |
| GAAATAGGCTAGACCGGGTC+GGG | - | chr2.4:52703716-52703735 | MS.gene73339:intron | 55.0% | |
| GGAAATAGGCTAGACCGGGT+CGG | - | chr2.4:52703715-52703734 | MS.gene73339:intron | 55.0% | |
| GGGTGGAAATAGGCTAGACC+GGG | - | chr2.4:52703711-52703730 | MS.gene73339:intron | 55.0% | |
| TGATGCCGGTGTACGAATCG+CGG | - | chr2.4:52702420-52702439 | MS.gene73339:CDS | 55.0% | |
| TTACGCGGTGTGGGTGATCA+AGG | - | chr2.4:52705084-52705103 | MS.gene73339:CDS | 55.0% | |
| !! | TCGTGGTGTTGCTGGAACGA+CGG | + | chr2.4:52702188-52702207 | None:intergenic | 55.0% |
| AGGCCTTACAAAGCCCGACC+CGG | + | chr2.4:52703732-52703751 | None:intergenic | 60.0% | |
| CATGCCAGATCACCCGACAG+GGG | + | chr2.4:52704023-52704042 | None:intergenic | 60.0% | |
| CGACTCCGCGATTCGTACAC+CGG | + | chr2.4:52702428-52702447 | None:intergenic | 60.0% | |
| CTATGTCGTAGGCCCCTGTC+GGG | - | chr2.4:52704008-52704027 | MS.gene73339:intron | 60.0% | |
| GCTATGTCGTAGGCCCCTGT+CGG | - | chr2.4:52704007-52704026 | MS.gene73339:intron | 60.0% | |
| GTCGTTCCAGCAACACCACG+AGG | - | chr2.4:52702187-52702206 | MS.gene73339:CDS | 60.0% | |
| ! | AGACCGGGTCGGGCTTTGTA+AGG | - | chr2.4:52703726-52703745 | MS.gene73339:intron | 60.0% |
| !! | TCTTCGCCTCGTGGTGTTGC+TGG | + | chr2.4:52702196-52702215 | None:intergenic | 60.0% |
| TAGGCCCCTGTCGGGTGATC+TGG | - | chr2.4:52704016-52704035 | MS.gene73339:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 52702130 | 52705257 | 52702130 | ID=MS.gene73339 |
| chr2.4 | mRNA | 52702130 | 52705257 | 52702130 | ID=MS.gene73339.t1;Parent=MS.gene73339 |
| chr2.4 | exon | 52704823 | 52705257 | 52704823 | ID=MS.gene73339.t1.exon1;Parent=MS.gene73339.t1 |
| chr2.4 | CDS | 52704823 | 52705257 | 52704823 | ID=cds.MS.gene73339.t1;Parent=MS.gene73339.t1 |
| chr2.4 | exon | 52702130 | 52703023 | 52702130 | ID=MS.gene73339.t1.exon2;Parent=MS.gene73339.t1 |
| chr2.4 | CDS | 52702130 | 52703023 | 52702130 | ID=cds.MS.gene73339.t1;Parent=MS.gene73339.t1 |
| Gene Sequence |
| Protein sequence |
