Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37919.t1 | XP_024634972.1 | 92.8 | 443 | 32 | 0 | 1 | 443 | 1 | 443 | 1.40E-236 | 828.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37919.t1 | Q39048 | 41.0 | 434 | 220 | 14 | 7 | 425 | 1 | 413 | 1.7e-76 | 288.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37919.t1 | A0A396J1C8 | 92.8 | 443 | 32 | 0 | 1 | 443 | 1 | 443 | 1.0e-236 | 828.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene37919 | 0.884515 | 1.79E-71 | -1.69E-46 |
| MS.gene049369 | MS.gene37919 | 0.849218 | 3.72E-60 | -1.69E-46 |
| MS.gene049396 | MS.gene37919 | 0.811783 | 5.89E-51 | -1.69E-46 |
| MS.gene050122 | MS.gene37919 | 0.820208 | 7.75E-53 | -1.69E-46 |
| MS.gene050520 | MS.gene37919 | 0.852344 | 4.91E-61 | -1.69E-46 |
| MS.gene050670 | MS.gene37919 | 0.84305 | 1.78E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene37919 | 0.842708 | 2.19E-58 | -1.69E-46 |
| MS.gene051255 | MS.gene37919 | 0.813948 | 1.98E-51 | -1.69E-46 |
| MS.gene051360 | MS.gene37919 | 0.846494 | 2.10E-59 | -1.69E-46 |
| MS.gene051525 | MS.gene37919 | 0.824178 | 9.29E-54 | -1.69E-46 |
| MS.gene051605 | MS.gene37919 | 0.802181 | 6.34E-49 | -1.69E-46 |
| MS.gene051941 | MS.gene37919 | 0.813799 | 2.13E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene37919 | -0.806185 | 9.30E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene37919 | 0.836752 | 7.78E-57 | -1.69E-46 |
| MS.gene052253 | MS.gene37919 | 0.82373 | 1.18E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene37919 | 0.828533 | 8.53E-55 | -1.69E-46 |
| MS.gene052346 | MS.gene37919 | 0.834918 | 2.27E-56 | -1.69E-46 |
| MS.gene052414 | MS.gene37919 | 0.837323 | 5.56E-57 | -1.69E-46 |
| MS.gene052421 | MS.gene37919 | 0.835937 | 1.25E-56 | -1.69E-46 |
| MS.gene052485 | MS.gene37919 | 0.843003 | 1.83E-58 | -1.69E-46 |
| MS.gene052982 | MS.gene37919 | 0.801813 | 7.54E-49 | -1.69E-46 |
| MS.gene052999 | MS.gene37919 | 0.836568 | 8.67E-57 | -1.69E-46 |
| MS.gene053169 | MS.gene37919 | 0.858534 | 7.71E-63 | -1.69E-46 |
| MS.gene05316 | MS.gene37919 | 0.812427 | 4.26E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene37919 | 0.801786 | 7.64E-49 | -1.69E-46 |
| MS.gene05335 | MS.gene37919 | 0.843341 | 1.49E-58 | -1.69E-46 |
| MS.gene053449 | MS.gene37919 | 0.8218 | 3.33E-53 | -1.69E-46 |
| MS.gene053758 | MS.gene37919 | 0.816969 | 4.20E-52 | -1.69E-46 |
| MS.gene053813 | MS.gene37919 | 0.844312 | 8.17E-59 | -1.69E-46 |
| MS.gene053889 | MS.gene37919 | 0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene053912 | MS.gene37919 | 0.811554 | 6.61E-51 | -1.69E-46 |
| MS.gene053928 | MS.gene37919 | 0.805362 | 1.38E-49 | -1.69E-46 |
| MS.gene054010 | MS.gene37919 | 0.819117 | 1.37E-52 | -1.69E-46 |
| MS.gene054012 | MS.gene37919 | 0.810953 | 8.92E-51 | -1.69E-46 |
| MS.gene054013 | MS.gene37919 | 0.80981 | 1.57E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene37919 | 0.802731 | 4.88E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene37919 | 0.852407 | 4.71E-61 | -1.69E-46 |
| MS.gene05494 | MS.gene37919 | 0.822942 | 1.81E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene37919 | 0.81909 | 1.39E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene37919 | 0.825311 | 5.02E-54 | -1.69E-46 |
| MS.gene055224 | MS.gene37919 | 0.801459 | 8.91E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene37919 | 0.817663 | 2.93E-52 | -1.69E-46 |
| MS.gene055666 | MS.gene37919 | 0.814046 | 1.88E-51 | -1.69E-46 |
| MS.gene055741 | MS.gene37919 | 0.863422 | 2.52E-64 | -1.69E-46 |
| MS.gene055744 | MS.gene37919 | 0.867009 | 1.88E-65 | -1.69E-46 |
| MS.gene055802 | MS.gene37919 | 0.813886 | 2.04E-51 | -1.69E-46 |
| MS.gene055909 | MS.gene37919 | 0.873367 | 1.55E-67 | -1.69E-46 |
| MS.gene055911 | MS.gene37919 | 0.874141 | 8.52E-68 | -1.69E-46 |
| MS.gene056166 | MS.gene37919 | 0.801026 | 1.09E-48 | -1.69E-46 |
| MS.gene056422 | MS.gene37919 | 0.838188 | 3.34E-57 | -1.69E-46 |
| MS.gene056511 | MS.gene37919 | 0.839048 | 2.00E-57 | -1.69E-46 |
| MS.gene056514 | MS.gene37919 | 0.804081 | 2.56E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene37919 | 0.816813 | 4.56E-52 | -1.69E-46 |
| MS.gene056902 | MS.gene37919 | 0.821997 | 3.00E-53 | -1.69E-46 |
| MS.gene057019 | MS.gene37919 | 0.855445 | 6.28E-62 | -1.69E-46 |
| MS.gene057124 | MS.gene37919 | 0.847243 | 1.31E-59 | -1.69E-46 |
| MS.gene057396 | MS.gene37919 | 0.828328 | 9.56E-55 | -1.69E-46 |
| MS.gene057537 | MS.gene37919 | 0.801342 | 9.42E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene37919 | 0.815708 | 8.05E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene37919 | 0.819702 | 1.01E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene37919 | 0.828899 | 6.95E-55 | -1.69E-46 |
| MS.gene057825 | MS.gene37919 | 0.804019 | 2.64E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene37919 | 0.843437 | 1.40E-58 | -1.69E-46 |
| MS.gene058075 | MS.gene37919 | 0.800239 | 1.58E-48 | -1.69E-46 |
| MS.gene058120 | MS.gene37919 | 0.836917 | 7.07E-57 | -1.69E-46 |
| MS.gene058130 | MS.gene37919 | 0.81497 | 1.17E-51 | -1.69E-46 |
| MS.gene058365 | MS.gene37919 | 0.806938 | 6.45E-50 | -1.69E-46 |
| MS.gene05842 | MS.gene37919 | 0.804197 | 2.42E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene37919 | 0.802632 | 5.12E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene37919 | 0.840793 | 7.02E-58 | -1.69E-46 |
| MS.gene058928 | MS.gene37919 | 0.824323 | 8.59E-54 | -1.69E-46 |
| MS.gene058948 | MS.gene37919 | 0.84809 | 7.65E-60 | -1.69E-46 |
| MS.gene058949 | MS.gene37919 | 0.808337 | 3.25E-50 | -1.69E-46 |
| MS.gene059082 | MS.gene37919 | 0.810114 | 1.35E-50 | -1.69E-46 |
| MS.gene059129 | MS.gene37919 | 0.835827 | 1.34E-56 | -1.69E-46 |
| MS.gene059366 | MS.gene37919 | 0.832747 | 7.92E-56 | -1.69E-46 |
| MS.gene059368 | MS.gene37919 | 0.828708 | 7.74E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene37919 | 0.848875 | 4.64E-60 | -1.69E-46 |
| MS.gene059674 | MS.gene37919 | 0.863103 | 3.16E-64 | -1.69E-46 |
| MS.gene059680 | MS.gene37919 | 0.811538 | 6.66E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene37919 | 0.836234 | 1.05E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene37919 | 0.826965 | 2.03E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene37919 | 0.826887 | 2.12E-54 | -1.69E-46 |
| MS.gene059711 | MS.gene37919 | 0.836253 | 1.04E-56 | -1.69E-46 |
| MS.gene059807 | MS.gene37919 | 0.846431 | 2.18E-59 | -1.69E-46 |
| MS.gene059876 | MS.gene37919 | 0.811395 | 7.15E-51 | -1.69E-46 |
| MS.gene059974 | MS.gene37919 | 0.812463 | 4.19E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene37919 | 0.881831 | 1.73E-70 | -1.69E-46 |
| MS.gene060401 | MS.gene37919 | 0.826256 | 3.00E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene37919 | 0.870825 | 1.09E-66 | -1.69E-46 |
| MS.gene060986 | MS.gene37919 | 0.810734 | 9.95E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene37919 | 0.851058 | 1.14E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023496 | MS.gene37919 | PPI |
| MS.gene08966 | MS.gene37919 | PPI |
| MS.gene37919 | MS.gene09279 | PPI |
| MS.gene08811 | MS.gene37919 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37919.t1 | MTR_3g100150 | 93.793 | 435 | 27 | 0 | 1 | 435 | 1 | 435 | 0.0 | 847 |
| MS.gene37919.t1 | MTR_1g035890 | 78.539 | 438 | 89 | 2 | 1 | 436 | 1 | 435 | 0.0 | 713 |
| MS.gene37919.t1 | MTR_2g036780 | 76.749 | 443 | 97 | 3 | 1 | 440 | 1 | 440 | 0.0 | 701 |
| MS.gene37919.t1 | MTR_8g081600 | 33.088 | 272 | 164 | 7 | 163 | 428 | 1 | 260 | 5.50e-41 | 147 |
| MS.gene37919.t1 | MTR_8g081480 | 48.092 | 131 | 66 | 2 | 15 | 144 | 16 | 145 | 6.42e-32 | 119 |
| MS.gene37919.t1 | MTR_7g114960 | 25.397 | 441 | 277 | 16 | 18 | 424 | 15 | 437 | 6.28e-23 | 101 |
| MS.gene37919.t1 | MTR_1g011660 | 24.374 | 439 | 278 | 15 | 20 | 424 | 13 | 431 | 1.15e-20 | 94.4 |
| MS.gene37919.t1 | MTR_8g096530 | 27.459 | 244 | 152 | 6 | 46 | 275 | 39 | 271 | 3.54e-17 | 84.0 |
| MS.gene37919.t1 | MTR_8g079970 | 23.684 | 266 | 188 | 8 | 18 | 278 | 10 | 265 | 2.97e-15 | 77.8 |
| MS.gene37919.t1 | MTR_2g064495 | 23.022 | 278 | 182 | 9 | 17 | 278 | 8 | 269 | 2.84e-13 | 71.6 |
| MS.gene37919.t1 | MTR_4g007540 | 24.818 | 274 | 185 | 11 | 15 | 277 | 6 | 269 | 3.23e-13 | 71.6 |
| MS.gene37919.t1 | MTR_3g026950 | 26.335 | 281 | 175 | 9 | 18 | 277 | 9 | 278 | 3.30e-13 | 71.6 |
| MS.gene37919.t1 | MTR_2g105330 | 24.265 | 272 | 183 | 10 | 18 | 278 | 10 | 269 | 8.38e-13 | 70.1 |
| MS.gene37919.t1 | MTR_4g127650 | 23.684 | 418 | 241 | 18 | 61 | 431 | 69 | 455 | 8.58e-13 | 70.5 |
| MS.gene37919.t1 | MTR_8g079950 | 28.049 | 164 | 110 | 4 | 18 | 177 | 10 | 169 | 9.53e-13 | 70.1 |
| MS.gene37919.t1 | MTR_5g084850 | 25.610 | 164 | 114 | 4 | 18 | 177 | 10 | 169 | 1.77e-12 | 69.3 |
| MS.gene37919.t1 | MTR_7g086000 | 25.552 | 317 | 193 | 13 | 15 | 303 | 8 | 309 | 2.77e-12 | 68.9 |
| MS.gene37919.t1 | MTR_7g084940 | 21.900 | 379 | 244 | 17 | 5 | 352 | 10 | 367 | 3.02e-12 | 68.6 |
| MS.gene37919.t1 | MTR_4g097090 | 22.619 | 420 | 244 | 18 | 61 | 431 | 68 | 455 | 1.44e-11 | 66.6 |
| MS.gene37919.t1 | MTR_8g075610 | 24.481 | 241 | 158 | 10 | 48 | 275 | 29 | 258 | 2.77e-11 | 65.5 |
| MS.gene37919.t1 | MTR_3g098980 | 25.105 | 239 | 155 | 9 | 46 | 271 | 46 | 273 | 2.77e-11 | 65.5 |
| MS.gene37919.t1 | MTR_5g090830 | 26.180 | 233 | 154 | 6 | 54 | 275 | 55 | 280 | 2.90e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37919.t1 | AT4G24510 | 41.014 | 434 | 220 | 14 | 7 | 425 | 1 | 413 | 9.36e-99 | 302 |
| MS.gene37919.t1 | AT4G13840 | 36.279 | 430 | 249 | 10 | 8 | 430 | 11 | 422 | 1.07e-91 | 284 |
| MS.gene37919.t1 | AT3G23840 | 36.343 | 432 | 242 | 11 | 10 | 437 | 11 | 413 | 2.26e-90 | 280 |
| MS.gene37919.t1 | AT3G48720 | 25.000 | 304 | 197 | 11 | 29 | 313 | 25 | 316 | 3.55e-14 | 74.7 |
| MS.gene37919.t1 | AT5G48930 | 22.769 | 325 | 195 | 10 | 15 | 317 | 6 | 296 | 3.75e-14 | 74.3 |
| MS.gene37919.t1 | AT2G19070 | 24.204 | 314 | 201 | 11 | 11 | 301 | 3 | 302 | 2.21e-13 | 72.4 |
| MS.gene37919.t1 | AT1G32910 | 24.439 | 401 | 244 | 15 | 60 | 421 | 59 | 439 | 8.68e-13 | 70.5 |
| MS.gene37919.t1 | AT1G27620 | 22.943 | 401 | 267 | 15 | 46 | 425 | 43 | 422 | 9.64e-12 | 67.0 |
| MS.gene37919.t1 | AT5G41040 | 28.902 | 173 | 108 | 5 | 46 | 212 | 65 | 228 | 1.04e-11 | 67.0 |
| MS.gene37919.t1 | AT5G41040 | 28.902 | 173 | 108 | 5 | 46 | 212 | 49 | 212 | 1.14e-11 | 67.0 |
| MS.gene37919.t1 | AT5G63560 | 24.597 | 248 | 156 | 11 | 46 | 278 | 41 | 272 | 3.47e-11 | 65.5 |
| MS.gene37919.t1 | AT4G31910 | 24.500 | 200 | 138 | 5 | 48 | 241 | 45 | 237 | 6.55e-11 | 64.7 |
Find 87 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATCCCATTTCCATTAAA+AGG | 0.125824 | 3.3:+83109048 | MS.gene37919:CDS |
| AATGGGTTCACTACCTAATT+TGG | 0.146863 | 3.3:+83107209 | None:intergenic |
| CTTTGTCTTGGTATTGATAT+TGG | 0.233450 | 3.3:-83109189 | None:intergenic |
| CGGTTGAAATTCTTGAAGTT+TGG | 0.237541 | 3.3:-83107242 | None:intergenic |
| TAAAGGGCAGAAACCGATTT+TGG | 0.239229 | 3.3:+83109553 | MS.gene37919:CDS |
| TTATTACCATTGTCATCTTC+TGG | 0.251400 | 3.3:-83109632 | None:intergenic |
| GATTCATACTCACATGTTTC+AGG | 0.254132 | 3.3:+83107429 | MS.gene37919:CDS |
| GGACAAATAAGAGGAGATTT+TGG | 0.254623 | 3.3:+83109251 | MS.gene37919:CDS |
| TGGGGAGGAGTTTCCAAATT+AGG | 0.268890 | 3.3:-83107222 | None:intergenic |
| TTTGGCATGTGAAGAGATTT+TGG | 0.279640 | 3.3:-83108987 | None:intergenic |
| AACTGAGGTTTAGTGAGATT+TGG | 0.304675 | 3.3:-83109005 | None:intergenic |
| AAAGTTAACATTTGTAGATT+TGG | 0.305013 | 3.3:+83109502 | MS.gene37919:CDS |
| GGTTGAAATTCTTGAAGTTT+GGG | 0.305408 | 3.3:-83107241 | None:intergenic |
| TTAGCAAATCCATGTAGTTT+AGG | 0.306387 | 3.3:-83107308 | None:intergenic |
| AAATTATTTCAGCTATGATT+TGG | 0.308886 | 3.3:+83109219 | MS.gene37919:CDS |
| GATATTGGTATTGGTTGATA+TGG | 0.311739 | 3.3:-83109174 | None:intergenic |
| CTTGGTATTGATATTGGTAT+TGG | 0.335050 | 3.3:-83109183 | None:intergenic |
| CGAGTCTTGGACTTTGTTAA+GGG | 0.335519 | 3.3:+83109744 | MS.gene37919:CDS |
| AAATCACAATTTGCCAAAAT+CGG | 0.338748 | 3.3:-83109566 | None:intergenic |
| TTCCAAACAACTTCATCATT+TGG | 0.339654 | 3.3:+83109142 | MS.gene37919:CDS |
| TTTAGAATTGAATAAGTATA+TGG | 0.345472 | 3.3:-83107352 | None:intergenic |
| CTGAGCTGGGCTCACATTCT+TGG | 0.349530 | 3.3:+83108900 | MS.gene37919:CDS |
| GAAGATGACAATGGTAATAA+TGG | 0.356828 | 3.3:+83109635 | MS.gene37919:CDS |
| CAACAACTGTTGAAGAATAT+TGG | 0.364639 | 3.3:+83109072 | MS.gene37919:CDS |
| TCGAGTCTTGGACTTTGTTA+AGG | 0.367163 | 3.3:+83109743 | MS.gene37919:CDS |
| TCTTCACCACGAGGGGTTGC+TGG | 0.369933 | 3.3:-83107270 | None:intergenic |
| GACTATCCGTGGGACTGAGC+TGG | 0.378652 | 3.3:+83108886 | MS.gene37919:CDS |
| GCTATGATTTGGAAATGTAT+AGG | 0.393101 | 3.3:+83109230 | MS.gene37919:CDS |
| TTTATGGGATAAAGATTAAA+GGG | 0.393168 | 3.3:+83109537 | MS.gene37919:CDS |
| ATACAATATTGTTCGAGTCT+TGG | 0.400828 | 3.3:+83109731 | MS.gene37919:CDS |
| GGGTGATCAAGGTGTTGTTT+TGG | 0.424320 | 3.3:+83109598 | MS.gene37919:CDS |
| TACCAAATGATGAAGTTGTT+TGG | 0.426548 | 3.3:-83109144 | None:intergenic |
| ACGAGGGGTTGCTGGAACTA+CGG | 0.428143 | 3.3:-83107262 | None:intergenic |
| GTGCTAGTTTACATTTCAGT+TGG | 0.430768 | 3.3:-83109697 | None:intergenic |
| AGGGTTAGAATATCAGAATC+AGG | 0.434770 | 3.3:+83107453 | MS.gene37919:CDS |
| CCATTGTCATCTTCTGGTCC+TGG | 0.436805 | 3.3:-83109626 | None:intergenic |
| AATGTAAACTAGCACAAGAA+TGG | 0.442197 | 3.3:+83109705 | MS.gene37919:CDS |
| TAATCCCATTTCCATTAAAA+GGG | 0.449982 | 3.3:+83109049 | MS.gene37919:CDS |
| GAAAATGAATTCCCGACAAA+TGG | 0.454250 | 3.3:+83109320 | MS.gene37919:CDS |
| CTCAACACCGAGCCATTTGT+CGG | 0.462606 | 3.3:-83109332 | None:intergenic |
| ATGGTAACAATTTCTTTACC+TGG | 0.475074 | 3.3:+83109662 | MS.gene37919:CDS |
| AGTATATGGATCGGATATAG+TGG | 0.480043 | 3.3:-83107338 | None:intergenic |
| AATTTCAAAATACTTTGTCT+TGG | 0.480369 | 3.3:-83109201 | None:intergenic |
| GCGTCGTTGCACTTGATAAA+CGG | 0.491094 | 3.3:-83107480 | None:intergenic |
| ATGTAAACTAGCACAAGAAT+GGG | 0.492269 | 3.3:+83109706 | MS.gene37919:CDS |
| TTTCGAGGTGTGGGTGATCA+AGG | 0.495403 | 3.3:+83109587 | MS.gene37919:CDS |
| CAATGGTAATAATGGAAGGA+TGG | 0.498640 | 3.3:+83109643 | MS.gene37919:CDS |
| AGTTGGTCAAGTTCTTTCCC+AGG | 0.509452 | 3.3:-83109680 | None:intergenic |
| ATCGAAACAAGTTTACCTCC+TGG | 0.511391 | 3.3:+83109359 | MS.gene37919:CDS |
| ACTATCCGTGGGACTGAGCT+GGG | 0.514770 | 3.3:+83108887 | MS.gene37919:CDS |
| CATACTCACATGTTTCAGGT+AGG | 0.517432 | 3.3:+83107433 | MS.gene37919:CDS |
| TCAACACCGAGCCATTTGTC+GGG | 0.518341 | 3.3:-83109331 | None:intergenic |
| TTTATCAAGTGCAACGACGC+GGG | 0.528936 | 3.3:+83107483 | MS.gene37919:CDS |
| TAGTTCACATTCTTCAAATG+TGG | 0.529855 | 3.3:+83108861 | MS.gene37919:intron |
| TCTGATATATTAGATTCTCC+AGG | 0.530313 | 3.3:-83109377 | None:intergenic |
| GCGAGAAAACGCTGCGTGAA+TGG | 0.530466 | 3.3:+83107529 | MS.gene37919:CDS |
| ATACTCACATGTTTCAGGTA+GGG | 0.532854 | 3.3:+83107434 | MS.gene37919:CDS |
| AATGAATGAGAATCATGCAT+TGG | 0.533438 | 3.3:+83109427 | MS.gene37919:CDS |
| GAAAACGCTGCGTGAATGGT+TGG | 0.535685 | 3.3:+83107533 | MS.gene37919:CDS |
| AGCTAGTGTGTGACTCCACT+TGG | 0.536358 | 3.3:-83108952 | None:intergenic |
| AAGTGGAGTCACACACTAGC+TGG | 0.545603 | 3.3:+83108954 | MS.gene37919:CDS |
| TGGTAACAATTTCTTTACCT+GGG | 0.546017 | 3.3:+83109663 | MS.gene37919:CDS |
| CTTGTATATGATCATGTGCT+TGG | 0.551161 | 3.3:+83107582 | MS.gene37919:CDS |
| ATAGAATTTGATAAGAACTG+AGG | 0.563805 | 3.3:-83109020 | None:intergenic |
| ATGACAATGGTAATAATGGA+AGG | 0.564844 | 3.3:+83109639 | MS.gene37919:CDS |
| ATACTTATTCAATTCTAAAG+CGG | 0.570391 | 3.3:+83107356 | MS.gene37919:CDS |
| TTCACATTCTTCAAATGTGG+AGG | 0.578555 | 3.3:+83108864 | MS.gene37919:CDS |
| GAATCAAGTAGTGGAAACAT+TGG | 0.583620 | 3.3:-83107411 | None:intergenic |
| AAATGTATAGGACAAATAAG+AGG | 0.585230 | 3.3:+83109242 | MS.gene37919:CDS |
| GTTGAAATTCTTGAAGTTTG+GGG | 0.589535 | 3.3:-83107240 | None:intergenic |
| TTATCAAGTGCAACGACGCG+GGG | 0.589797 | 3.3:+83107484 | MS.gene37919:CDS |
| TGCATATAACCTAAACTACA+TGG | 0.592000 | 3.3:+83107299 | MS.gene37919:CDS |
| GTACATATCGTCACAACCCT+AGG | 0.594537 | 3.3:-83109275 | None:intergenic |
| TGAATTCCCGACAAATGGCT+CGG | 0.606392 | 3.3:+83109325 | MS.gene37919:CDS |
| GAAATTCTTGAAGTTTGGGG+AGG | 0.607791 | 3.3:-83107237 | None:intergenic |
| GTGAGCCCAGCTCAGTCCCA+CGG | 0.619598 | 3.3:-83108892 | None:intergenic |
| CAAATGTGGAGGACTATCCG+TGG | 0.627456 | 3.3:+83108875 | MS.gene37919:CDS |
| AATTGAATAAGTATATGGAT+CGG | 0.632663 | 3.3:-83107347 | None:intergenic |
| AAATGTGGAGGACTATCCGT+GGG | 0.635013 | 3.3:+83108876 | MS.gene37919:CDS |
| TGTGAGTATGAATCAAGTAG+TGG | 0.635337 | 3.3:-83107420 | None:intergenic |
| AGTAGCTACATAACTATCAG+TGG | 0.654612 | 3.3:-83109102 | None:intergenic |
| AAAATGATGGAGGAAGGTGA+AGG | 0.654901 | 3.3:+83109452 | MS.gene37919:CDS |
| GATATATTAGATTCTCCAGG+AGG | 0.665656 | 3.3:-83109374 | None:intergenic |
| GTTTATCAAGTGCAACGACG+CGG | 0.688910 | 3.3:+83107482 | MS.gene37919:CDS |
| GTAGTTCCAGCAACCCCTCG+TGG | 0.703084 | 3.3:+83107264 | MS.gene37919:CDS |
| CCAGGACCAGAAGATGACAA+TGG | 0.706189 | 3.3:+83109626 | MS.gene37919:CDS |
| TATCAAGTGCAACGACGCGG+GGG | 0.711388 | 3.3:+83107485 | MS.gene37919:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAAAATTAGTTTTTTTTT+AGG | - | chr3.3:83107989-83108008 | None:intergenic | 10.0% |
| !!! | AATGGTTATATTTTTTTTAT+TGG | - | chr3.3:83108802-83108821 | None:intergenic | 10.0% |
| !!! | ACAAAATTAGTTTTTTTTTA+GGG | - | chr3.3:83107988-83108007 | None:intergenic | 10.0% |
| !!! | ATAAATATTACTAATTTTGT+TGG | + | chr3.3:83107957-83107976 | MS.gene37919:intron | 10.0% |
| !!! | TTATATTTTTTTTATTGGAA+CGG | - | chr3.3:83108797-83108816 | None:intergenic | 10.0% |
| !!! | TTTTATGTTTCTTTTTATTA+GGG | - | chr3.3:83108174-83108193 | None:intergenic | 10.0% |
| !!! | TTTTGTTCTAATTTAAAAAA+CGG | + | chr3.3:83108145-83108164 | MS.gene37919:intron | 10.0% |
| !!! | TTTTTATGTTTCTTTTTATT+AGG | - | chr3.3:83108175-83108194 | None:intergenic | 10.0% |
| !! | TCTCGATTATAATTTAAAAA+TGG | - | chr3.3:83108104-83108123 | None:intergenic | 15.0% |
| !! | TTTGTTCTAATTTAAAAAAC+GGG | + | chr3.3:83108146-83108165 | MS.gene37919:intron | 15.0% |
| !!! | AAAGATGATTTTATTGTTTA+TGG | + | chr3.3:83109476-83109495 | MS.gene37919:CDS | 15.0% |
| !!! | ATAAATTTTCTTTATTTGTG+TGG | + | chr3.3:83108702-83108721 | MS.gene37919:intron | 15.0% |
| !!! | ATTTTCATTTTCTTTAAATC+CGG | - | chr3.3:83108559-83108578 | None:intergenic | 15.0% |
| !!! | TTTAGAATTGAATAAGTATA+TGG | - | chr3.3:83107355-83107374 | None:intergenic | 15.0% |
| !! | AAAGTTAACATTTGTAGATT+TGG | + | chr3.3:83109502-83109521 | MS.gene37919:CDS | 20.0% |
| !! | AAATTATTTCAGCTATGATT+TGG | + | chr3.3:83109219-83109238 | MS.gene37919:CDS | 20.0% |
| !! | AATTGAATAAGTATATGGAT+CGG | - | chr3.3:83107350-83107369 | None:intergenic | 20.0% |
| !! | AATTTCAAAATACTTTGTCT+TGG | - | chr3.3:83109204-83109223 | None:intergenic | 20.0% |
| !! | ATAGTAAAATCTTACTATCA+TGG | - | chr3.3:83108631-83108650 | None:intergenic | 20.0% |
| !! | ATATCATGATCATGATATTA+AGG | + | chr3.3:83107656-83107675 | MS.gene37919:intron | 20.0% |
| !! | CCAATATATAAACATGAAAT+AGG | - | chr3.3:83107704-83107723 | None:intergenic | 20.0% |
| !! | CCTATTTCATGTTTATATAT+TGG | + | chr3.3:83107701-83107720 | MS.gene37919:intron | 20.0% |
| !! | TATATAAACATGAAATAGGT+AGG | - | chr3.3:83107700-83107719 | None:intergenic | 20.0% |
| !! | TTTATGGGATAAAGATTAAA+GGG | + | chr3.3:83109537-83109556 | MS.gene37919:CDS | 20.0% |
| !!! | AAAGCATATTTTGAAATGAA+TGG | + | chr3.3:83108731-83108750 | MS.gene37919:intron | 20.0% |
| !!! | ATACTTATTCAATTCTAAAG+CGG | + | chr3.3:83107356-83107375 | MS.gene37919:CDS | 20.0% |
| !!! | GATCGATTTTTTTTTTTACA+AGG | - | chr3.3:83108302-83108321 | None:intergenic | 20.0% |
| !!! | TATTTGAAGCATATTTATCA+TGG | + | chr3.3:83108494-83108513 | MS.gene37919:intron | 20.0% |
| !!! | TTTTATGGGATAAAGATTAA+AGG | + | chr3.3:83109536-83109555 | MS.gene37919:CDS | 20.0% |
| !!! | TTTTGGCAGTTTTTTTTTAA+TGG | + | chr3.3:83108519-83108538 | MS.gene37919:intron | 20.0% |
| !!! | TTTTTTGTTAAGTAGTTTAG+TGG | - | chr3.3:83108404-83108423 | None:intergenic | 20.0% |
| ! | AAATCACAATTTGCCAAAAT+CGG | - | chr3.3:83109569-83109588 | None:intergenic | 25.0% |
| ! | AAATGTATAGGACAAATAAG+AGG | + | chr3.3:83109242-83109261 | MS.gene37919:CDS | 25.0% |
| ! | AAGTGAAAAAAAATTACTGC+AGG | - | chr3.3:83107867-83107886 | None:intergenic | 25.0% |
| ! | AGTGAAAAAAAATTACTGCA+GGG | - | chr3.3:83107866-83107885 | None:intergenic | 25.0% |
| ! | ATAATCCCATTTCCATTAAA+AGG | + | chr3.3:83109048-83109067 | MS.gene37919:CDS | 25.0% |
| ! | ATAGAATTTGATAAGAACTG+AGG | - | chr3.3:83109023-83109042 | None:intergenic | 25.0% |
| ! | ATGTCATTCTTATTCGATAT+TGG | - | chr3.3:83108676-83108695 | None:intergenic | 25.0% |
| ! | TAATCCCATTTCCATTAAAA+GGG | + | chr3.3:83109049-83109068 | MS.gene37919:CDS | 25.0% |
| ! | TTAAAATAGCTAGTGTTACA+AGG | - | chr3.3:83108456-83108475 | None:intergenic | 25.0% |
| ! | TTTGTTTGATCACGAAAATA+TGG | + | chr3.3:83108771-83108790 | MS.gene37919:intron | 25.0% |
| !! | GCATATTTATCATGGATTTT+TGG | + | chr3.3:83108502-83108521 | MS.gene37919:intron | 25.0% |
| !! | GGATAATTCTTTTCTTTTTG+AGG | - | chr3.3:83108238-83108257 | None:intergenic | 25.0% |
| !! | TGGAAGAAGCTAATTTTTAT+GGG | + | chr3.3:83109522-83109541 | MS.gene37919:CDS | 25.0% |
| !! | TTGGAAGAAGCTAATTTTTA+TGG | + | chr3.3:83109521-83109540 | MS.gene37919:CDS | 25.0% |
| AATGAATGAGAATCATGCAT+TGG | + | chr3.3:83109427-83109446 | MS.gene37919:CDS | 30.0% | |
| AATGTAAACTAGCACAAGAA+TGG | + | chr3.3:83109705-83109724 | MS.gene37919:CDS | 30.0% | |
| ATACAATATTGTTCGAGTCT+TGG | + | chr3.3:83109731-83109750 | MS.gene37919:CDS | 30.0% | |
| ATGGCTTAAATAATGTCACA+AGG | - | chr3.3:83107787-83107806 | None:intergenic | 30.0% | |
| ATGGTAACAATTTCTTTACC+TGG | + | chr3.3:83109662-83109681 | MS.gene37919:CDS | 30.0% | |
| ATGTAAACTAGCACAAGAAT+GGG | + | chr3.3:83109706-83109725 | MS.gene37919:CDS | 30.0% | |
| ATTTAAGCCATCTGTTAGTT+TGG | + | chr3.3:83107796-83107815 | MS.gene37919:intron | 30.0% | |
| CAACAACTGTTGAAGAATAT+TGG | + | chr3.3:83109072-83109091 | MS.gene37919:CDS | 30.0% | |
| GAAGATGACAATGGTAATAA+TGG | + | chr3.3:83109635-83109654 | MS.gene37919:CDS | 30.0% | |
| GGTTGAAATTCTTGAAGTTT+GGG | - | chr3.3:83107244-83107263 | None:intergenic | 30.0% | |
| GTTGAAATTCTTGAAGTTTG+GGG | - | chr3.3:83107243-83107262 | None:intergenic | 30.0% | |
| TACCAAATGATGAAGTTGTT+TGG | - | chr3.3:83109147-83109166 | None:intergenic | 30.0% | |
| TAGTTCACATTCTTCAAATG+TGG | + | chr3.3:83108861-83108880 | MS.gene37919:intron | 30.0% | |
| TCATGCATTGGAAAAAATGA+TGG | + | chr3.3:83109439-83109458 | MS.gene37919:CDS | 30.0% | |
| TCTGATATATTAGATTCTCC+AGG | - | chr3.3:83109380-83109399 | None:intergenic | 30.0% | |
| TGAATAAGTGATGTGTTTCT+TGG | - | chr3.3:83108359-83108378 | None:intergenic | 30.0% | |
| TGCATATAACCTAAACTACA+TGG | + | chr3.3:83107299-83107318 | MS.gene37919:CDS | 30.0% | |
| TGGTAACAATTTCTTTACCT+GGG | + | chr3.3:83109663-83109682 | MS.gene37919:CDS | 30.0% | |
| TTACAAGGTAACTAAGAGAT+TGG | - | chr3.3:83108287-83108306 | None:intergenic | 30.0% | |
| TTAGCAAATCCATGTAGTTT+AGG | - | chr3.3:83107311-83107330 | None:intergenic | 30.0% | |
| TTATTACCATTGTCATCTTC+TGG | - | chr3.3:83109635-83109654 | None:intergenic | 30.0% | |
| TTCCAAACAACTTCATCATT+TGG | + | chr3.3:83109142-83109161 | MS.gene37919:CDS | 30.0% | |
| ! | AGTTGCTTTGAATCAATGAA+TGG | - | chr3.3:83108820-83108839 | None:intergenic | 30.0% |
| ! | ATGACAATGGTAATAATGGA+AGG | + | chr3.3:83109639-83109658 | MS.gene37919:CDS | 30.0% |
| ! | GCTATGATTTGGAAATGTAT+AGG | + | chr3.3:83109230-83109249 | MS.gene37919:CDS | 30.0% |
| !! | AAACATTGGTGCTTTTAAGT+CGG | - | chr3.3:83107400-83107419 | None:intergenic | 30.0% |
| !! | CTTGGTATTGATATTGGTAT+TGG | - | chr3.3:83109186-83109205 | None:intergenic | 30.0% |
| !! | CTTTGTCTTGGTATTGATAT+TGG | - | chr3.3:83109192-83109211 | None:intergenic | 30.0% |
| !! | GATATTGGTATTGGTTGATA+TGG | - | chr3.3:83109177-83109196 | None:intergenic | 30.0% |
| AAAGGAGAAAAAGCAAGATC+AGG | - | chr3.3:83107609-83107628 | None:intergenic | 35.0% | |
| AACTGAGGTTTAGTGAGATT+TGG | - | chr3.3:83109008-83109027 | None:intergenic | 35.0% | |
| AATCGATCGCTTTACTCAAT+TGG | + | chr3.3:83108314-83108333 | MS.gene37919:intron | 35.0% | |
| AGGGTTAGAATATCAGAATC+AGG | + | chr3.3:83107453-83107472 | MS.gene37919:CDS | 35.0% | |
| AGTAGCTACATAACTATCAG+TGG | - | chr3.3:83109105-83109124 | None:intergenic | 35.0% | |
| AGTATATGGATCGGATATAG+TGG | - | chr3.3:83107341-83107360 | None:intergenic | 35.0% | |
| CAAGGTTAATAGTATGCACA+AGG | - | chr3.3:83107769-83107788 | None:intergenic | 35.0% | |
| CGGTTGAAATTCTTGAAGTT+TGG | - | chr3.3:83107245-83107264 | None:intergenic | 35.0% | |
| CTTGTATATGATCATGTGCT+TGG | + | chr3.3:83107582-83107601 | MS.gene37919:CDS | 35.0% | |
| GAAAATGAATTCCCGACAAA+TGG | + | chr3.3:83109320-83109339 | MS.gene37919:CDS | 35.0% | |
| GAACATCTTACATCATTCGA+AGG | + | chr3.3:83108122-83108141 | MS.gene37919:intron | 35.0% | |
| GATATATTAGATTCTCCAGG+AGG | - | chr3.3:83109377-83109396 | None:intergenic | 35.0% | |
| GATTCATACTCACATGTTTC+AGG | + | chr3.3:83107429-83107448 | MS.gene37919:CDS | 35.0% | |
| GCTAGATATTCACTCGTTTA+AGG | - | chr3.3:83108382-83108401 | None:intergenic | 35.0% | |
| GCTTAAAGCTGTTAATTGCA+AGG | - | chr3.3:83108259-83108278 | None:intergenic | 35.0% | |
| TGCATTGGAAAAAATGATGG+AGG | + | chr3.3:83109442-83109461 | MS.gene37919:CDS | 35.0% | |
| TGTGAGTATGAATCAAGTAG+TGG | - | chr3.3:83107423-83107442 | None:intergenic | 35.0% | |
| TTCACATTCTTCAAATGTGG+AGG | + | chr3.3:83108864-83108883 | MS.gene37919:CDS | 35.0% | |
| ! | AACAGTTGTTGCCCTTTTAA+TGG | - | chr3.3:83109063-83109082 | None:intergenic | 35.0% |
| ! | ATACTCACATGTTTCAGGTA+GGG | + | chr3.3:83107434-83107453 | MS.gene37919:CDS | 35.0% |
| ! | CAATGGTAATAATGGAAGGA+TGG | + | chr3.3:83109643-83109662 | MS.gene37919:CDS | 35.0% |
| ! | GAATCAAGTAGTGGAAACAT+TGG | - | chr3.3:83107414-83107433 | None:intergenic | 35.0% |
| ! | GGACAAATAAGAGGAGATTT+TGG | + | chr3.3:83109251-83109270 | MS.gene37919:CDS | 35.0% |
| ! | GGTGTTGTCAAAGTTAACTT+AGG | - | chr3.3:83108083-83108102 | None:intergenic | 35.0% |
| ! | GTGCTAGTTTACATTTCAGT+TGG | - | chr3.3:83109700-83109719 | None:intergenic | 35.0% |
| ! | GTTGCCCTTTTAATGGAAAT+GGG | - | chr3.3:83109056-83109075 | None:intergenic | 35.0% |
| ! | TGTTGCCCTTTTAATGGAAA+TGG | - | chr3.3:83109057-83109076 | None:intergenic | 35.0% |
| ! | TTGGAAAAAATGATGGAGGA+AGG | + | chr3.3:83109446-83109465 | MS.gene37919:CDS | 35.0% |
| ! | TTGGCAAATTGTGATTTTCG+AGG | + | chr3.3:83109572-83109591 | MS.gene37919:CDS | 35.0% |
| ! | TTTGGCATGTGAAGAGATTT+TGG | - | chr3.3:83108990-83109009 | None:intergenic | 35.0% |
| !! | AAAGGGCATCACAATTAACA+GGG | - | chr3.3:83108583-83108602 | None:intergenic | 35.0% |
| !! | AAATTGTGATTTTCGAGGTG+TGG | + | chr3.3:83109577-83109596 | MS.gene37919:CDS | 35.0% |
| !! | AATTGTGATTTTCGAGGTGT+GGG | + | chr3.3:83109578-83109597 | MS.gene37919:CDS | 35.0% |
| !! | CTTTTAAGTCGGATATTGAG+AGG | - | chr3.3:83107389-83107408 | None:intergenic | 35.0% |
| !!! | CTTTTAACTTCATCACCAAG+TGG | + | chr3.3:83108937-83108956 | MS.gene37919:CDS | 35.0% |
| !!! | TGATCTTGCTTTTTCTCCTT+TGG | + | chr3.3:83107608-83107627 | MS.gene37919:CDS | 35.0% |
| !!! | TTCTCCTTTGGTTTTTGTCA+AGG | + | chr3.3:83107620-83107639 | MS.gene37919:CDS | 35.0% |
| AATGGAGAGACAGAGTTAAC+CGG | + | chr3.3:83108537-83108556 | MS.gene37919:intron | 40.0% | |
| ATCGAAACAAGTTTACCTCC+TGG | + | chr3.3:83109359-83109378 | MS.gene37919:CDS | 40.0% | |
| CGCTTTACTCAATTGGTAGA+GGG | + | chr3.3:83108321-83108340 | MS.gene37919:intron | 40.0% | |
| CGTACCTTGACAAAAACCAA+AGG | - | chr3.3:83107627-83107646 | None:intergenic | 40.0% | |
| GAAATTCTTGAAGTTTGGGG+AGG | - | chr3.3:83107240-83107259 | None:intergenic | 40.0% | |
| TACTCAATTGGTAGAGGGTT+GGG | + | chr3.3:83108326-83108345 | MS.gene37919:intron | 40.0% | |
| TCGCTTTACTCAATTGGTAG+AGG | + | chr3.3:83108320-83108339 | MS.gene37919:intron | 40.0% | |
| TTACTCAATTGGTAGAGGGT+TGG | + | chr3.3:83108325-83108344 | MS.gene37919:intron | 40.0% | |
| ! | AAAATGATGGAGGAAGGTGA+AGG | + | chr3.3:83109452-83109471 | MS.gene37919:CDS | 40.0% |
| ! | AAGAGGAGATTTTGGACCTA+GGG | + | chr3.3:83109259-83109278 | MS.gene37919:CDS | 40.0% |
| ! | ACTATTTTCTTCACCACGAG+GGG | - | chr3.3:83107280-83107299 | None:intergenic | 40.0% |
| ! | AGCCATCTGTTAGTTTGGTT+TGG | + | chr3.3:83107801-83107820 | MS.gene37919:intron | 40.0% |
| ! | CACTATTTTCTTCACCACGA+GGG | - | chr3.3:83107281-83107300 | None:intergenic | 40.0% |
| ! | CATACTCACATGTTTCAGGT+AGG | + | chr3.3:83107433-83107452 | MS.gene37919:CDS | 40.0% |
| ! | GCCATCTGTTAGTTTGGTTT+GGG | + | chr3.3:83107802-83107821 | MS.gene37919:intron | 40.0% |
| ! | TAAGAGGAGATTTTGGACCT+AGG | + | chr3.3:83109258-83109277 | MS.gene37919:CDS | 40.0% |
| !! | CAAAGGGCATCACAATTAAC+AGG | - | chr3.3:83108584-83108603 | None:intergenic | 40.0% |
| !! | CCATCTGTTAGTTTGGTTTG+GGG | + | chr3.3:83107803-83107822 | MS.gene37919:intron | 40.0% |
| !! | TAAAGGGCAGAAACCGATTT+TGG | + | chr3.3:83109553-83109572 | MS.gene37919:CDS | 40.0% |
| AAATGTGGAGGACTATCCGT+GGG | + | chr3.3:83108876-83108895 | MS.gene37919:CDS | 45.0% | |
| AGTTGGTCAAGTTCTTTCCC+AGG | - | chr3.3:83109683-83109702 | None:intergenic | 45.0% | |
| CCCCAAACCAAACTAACAGA+TGG | - | chr3.3:83107806-83107825 | None:intergenic | 45.0% | |
| GCGTCGTTGCACTTGATAAA+CGG | - | chr3.3:83107483-83107502 | None:intergenic | 45.0% | |
| GTACATATCGTCACAACCCT+AGG | - | chr3.3:83109278-83109297 | None:intergenic | 45.0% | |
| GTTTATCAAGTGCAACGACG+CGG | + | chr3.3:83107482-83107501 | MS.gene37919:CDS | 45.0% | |
| TGAATTCCCGACAAATGGCT+CGG | + | chr3.3:83109325-83109344 | MS.gene37919:CDS | 45.0% | |
| TGGGGAGGAGTTTCCAAATT+AGG | - | chr3.3:83107225-83107244 | None:intergenic | 45.0% | |
| TTTATCAAGTGCAACGACGC+GGG | + | chr3.3:83107483-83107502 | MS.gene37919:CDS | 45.0% | |
| ! | GCACTATTTTCTTCACCACG+AGG | - | chr3.3:83107282-83107301 | None:intergenic | 45.0% |
| ! | GGCATGTGAAGAGATTTTGG+TGG | - | chr3.3:83108987-83109006 | None:intergenic | 45.0% |
| !!! | GGGTGATCAAGGTGTTGTTT+TGG | + | chr3.3:83109598-83109617 | MS.gene37919:CDS | 45.0% |
| !!! | GGTGTTGTTTTGGTTCTTCC+AGG | + | chr3.3:83109608-83109627 | MS.gene37919:CDS | 45.0% |
| AAGTGGAGTCACACACTAGC+TGG | + | chr3.3:83108954-83108973 | MS.gene37919:CDS | 50.0% | |
| AGCTAGTGTGTGACTCCACT+TGG | - | chr3.3:83108955-83108974 | None:intergenic | 50.0% | |
| CAAATGTGGAGGACTATCCG+TGG | + | chr3.3:83108875-83108894 | MS.gene37919:CDS | 50.0% | |
| CCAGGACCAGAAGATGACAA+TGG | + | chr3.3:83109626-83109645 | MS.gene37919:CDS | 50.0% | |
| CCATTGTCATCTTCTGGTCC+TGG | - | chr3.3:83109629-83109648 | None:intergenic | 50.0% | |
| CTCAACACCGAGCCATTTGT+CGG | - | chr3.3:83109335-83109354 | None:intergenic | 50.0% | |
| GAAAACGCTGCGTGAATGGT+TGG | + | chr3.3:83107533-83107552 | MS.gene37919:CDS | 50.0% | |
| GAGGCTGCGCAAATTGCAAA+GGG | - | chr3.3:83108600-83108619 | None:intergenic | 50.0% | |
| TACTATCATGGCCACCGATG+AGG | - | chr3.3:83108619-83108638 | None:intergenic | 50.0% | |
| TCAACACCGAGCCATTTGTC+GGG | - | chr3.3:83109334-83109353 | None:intergenic | 50.0% | |
| TGAGGCTGCGCAAATTGCAA+AGG | - | chr3.3:83108601-83108620 | None:intergenic | 50.0% | |
| TGCAATTTGCGCAGCCTCAT+CGG | + | chr3.3:83108602-83108621 | MS.gene37919:intron | 50.0% | |
| TTATCAAGTGCAACGACGCG+GGG | + | chr3.3:83107484-83107503 | MS.gene37919:CDS | 50.0% | |
| TTTCGAGGTGTGGGTGATCA+AGG | + | chr3.3:83109587-83109606 | MS.gene37919:CDS | 50.0% | |
| AATTTGCGCAGCCTCATCGG+TGG | + | chr3.3:83108605-83108624 | MS.gene37919:intron | 55.0% | |
| ACGAGGGGTTGCTGGAACTA+CGG | - | chr3.3:83107265-83107284 | None:intergenic | 55.0% | |
| ACTATCCGTGGGACTGAGCT+GGG | + | chr3.3:83108887-83108906 | MS.gene37919:CDS | 55.0% | |
| CTGAGCTGGGCTCACATTCT+TGG | + | chr3.3:83108900-83108919 | MS.gene37919:CDS | 55.0% | |
| GCGAGAAAACGCTGCGTGAA+TGG | + | chr3.3:83107529-83107548 | MS.gene37919:CDS | 55.0% | |
| TATCAAGTGCAACGACGCGG+GGG | + | chr3.3:83107485-83107504 | MS.gene37919:CDS | 55.0% | |
| GACTATCCGTGGGACTGAGC+TGG | + | chr3.3:83108886-83108905 | MS.gene37919:CDS | 60.0% | |
| GTAGTTCCAGCAACCCCTCG+TGG | + | chr3.3:83107264-83107283 | MS.gene37919:CDS | 60.0% | |
| TCTTCACCACGAGGGGTTGC+TGG | - | chr3.3:83107273-83107292 | None:intergenic | 60.0% | |
| GTGAGCCCAGCTCAGTCCCA+CGG | - | chr3.3:83108895-83108914 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83107210 | 83109763 | 83107210 | ID=MS.gene37919 |
| chr3.3 | mRNA | 83107210 | 83109763 | 83107210 | ID=MS.gene37919.t1;Parent=MS.gene37919 |
| chr3.3 | exon | 83107210 | 83107641 | 83107210 | ID=MS.gene37919.t1.exon1;Parent=MS.gene37919.t1 |
| chr3.3 | CDS | 83107210 | 83107641 | 83107210 | ID=cds.MS.gene37919.t1;Parent=MS.gene37919.t1 |
| chr3.3 | exon | 83108864 | 83109763 | 83108864 | ID=MS.gene37919.t1.exon2;Parent=MS.gene37919.t1 |
| chr3.3 | CDS | 83108864 | 83109763 | 83108864 | ID=cds.MS.gene37919.t1;Parent=MS.gene37919.t1 |
| Gene Sequence |
| Protein sequence |
