Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09669.t1 | XP_003611449.1 | 94 | 332 | 20 | 0 | 1 | 332 | 1 | 332 | 2.80E-181 | 644.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09669.t1 | Q9SLH7 | 64.6 | 325 | 114 | 1 | 7 | 331 | 12 | 335 | 1.5e-119 | 430.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09669.t1 | G7JZV3 | 94.0 | 332 | 20 | 0 | 1 | 332 | 1 | 332 | 2.0e-181 | 644.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050338 | MS.gene09669 | 0.809504 | 1.83E-50 | -1.69E-46 |
| MS.gene059685 | MS.gene09669 | 0.846709 | 1.83E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09669 | MS.gene012048 | PPI |
| MS.gene068826 | MS.gene09669 | PPI |
| MS.gene053958 | MS.gene09669 | PPI |
| MS.gene012047 | MS.gene09669 | PPI |
| MS.gene09669 | MS.gene59415 | PPI |
| MS.gene09669 | MS.gene89609 | PPI |
| MS.gene09669 | MS.gene047884 | PPI |
| MS.gene09669 | MS.gene047885 | PPI |
| MS.gene010565 | MS.gene09669 | PPI |
| MS.gene068822 | MS.gene09669 | PPI |
| MS.gene09669 | MS.gene074595 | PPI |
| MS.gene09669 | MS.gene78768 | PPI |
| MS.gene061253 | MS.gene09669 | PPI |
| MS.gene09669 | MS.gene76444 | PPI |
| MS.gene26846 | MS.gene09669 | PPI |
| MS.gene02412 | MS.gene09669 | PPI |
| MS.gene09669 | MS.gene068824 | PPI |
| MS.gene030103 | MS.gene09669 | PPI |
| MS.gene64708 | MS.gene09669 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09669.t1 | MTR_5g014100 | 93.976 | 332 | 20 | 0 | 1 | 332 | 1 | 332 | 0.0 | 631 |
| MS.gene09669.t1 | MTR_8g076820 | 54.459 | 314 | 137 | 3 | 18 | 331 | 23 | 330 | 1.16e-113 | 333 |
| MS.gene09669.t1 | MTR_5g021060 | 53.398 | 309 | 137 | 3 | 24 | 331 | 28 | 330 | 1.44e-111 | 327 |
| MS.gene09669.t1 | MTR_4g122640 | 49.673 | 306 | 147 | 2 | 26 | 331 | 38 | 336 | 2.04e-100 | 299 |
| MS.gene09669.t1 | MTR_1g022970 | 51.307 | 306 | 145 | 2 | 26 | 331 | 46 | 347 | 1.97e-99 | 297 |
| MS.gene09669.t1 | MTR_3g072190 | 47.432 | 331 | 161 | 3 | 1 | 331 | 1 | 318 | 2.01e-97 | 291 |
| MS.gene09669.t1 | MTR_3g094650 | 49.836 | 305 | 138 | 4 | 26 | 328 | 28 | 319 | 2.14e-97 | 291 |
| MS.gene09669.t1 | MTR_5g083860 | 48.624 | 327 | 153 | 4 | 7 | 331 | 12 | 325 | 7.39e-97 | 290 |
| MS.gene09669.t1 | MTR_7g072510 | 47.896 | 309 | 148 | 3 | 23 | 331 | 17 | 312 | 1.95e-96 | 288 |
| MS.gene09669.t1 | MTR_2g084080 | 45.619 | 331 | 166 | 4 | 1 | 331 | 1 | 317 | 5.42e-96 | 287 |
| MS.gene09669.t1 | MTR_4g029170 | 50.649 | 308 | 137 | 4 | 26 | 331 | 27 | 321 | 5.59e-96 | 287 |
| MS.gene09669.t1 | MTR_3g466200 | 49.359 | 312 | 142 | 6 | 23 | 331 | 22 | 320 | 8.28e-96 | 287 |
| MS.gene09669.t1 | MTR_5g049280 | 47.910 | 311 | 151 | 4 | 26 | 331 | 33 | 337 | 3.33e-95 | 286 |
| MS.gene09669.t1 | MTR_2g029560 | 47.419 | 310 | 159 | 2 | 22 | 331 | 20 | 325 | 2.95e-94 | 284 |
| MS.gene09669.t1 | MTR_2g084020 | 45.808 | 334 | 162 | 6 | 1 | 331 | 1 | 318 | 8.89e-94 | 281 |
| MS.gene09669.t1 | MTR_2g084110 | 45.619 | 331 | 166 | 5 | 1 | 331 | 1 | 317 | 9.91e-94 | 281 |
| MS.gene09669.t1 | MTR_7g072480 | 48.867 | 309 | 145 | 3 | 23 | 331 | 21 | 316 | 1.48e-93 | 281 |
| MS.gene09669.t1 | MTR_2g040000 | 49.673 | 306 | 143 | 5 | 30 | 331 | 33 | 331 | 1.52e-92 | 279 |
| MS.gene09669.t1 | MTR_2g084010 | 45.317 | 331 | 168 | 4 | 1 | 331 | 1 | 318 | 1.62e-92 | 278 |
| MS.gene09669.t1 | MTR_4g125940 | 47.883 | 307 | 154 | 3 | 26 | 331 | 28 | 329 | 1.83e-92 | 279 |
| MS.gene09669.t1 | MTR_4g029180 | 49.180 | 305 | 140 | 5 | 29 | 331 | 30 | 321 | 3.35e-92 | 278 |
| MS.gene09669.t1 | MTR_3g094670 | 49.026 | 308 | 142 | 4 | 26 | 331 | 28 | 322 | 1.73e-91 | 276 |
| MS.gene09669.t1 | MTR_4g029190 | 47.188 | 320 | 158 | 3 | 12 | 331 | 32 | 340 | 3.36e-91 | 276 |
| MS.gene09669.t1 | MTR_7g093370 | 46.906 | 307 | 158 | 3 | 26 | 331 | 69 | 371 | 6.41e-91 | 276 |
| MS.gene09669.t1 | MTR_2g029730 | 47.302 | 315 | 160 | 3 | 17 | 331 | 18 | 326 | 1.07e-90 | 275 |
| MS.gene09669.t1 | MTR_1g115900 | 46.626 | 326 | 156 | 6 | 8 | 331 | 12 | 321 | 1.68e-90 | 274 |
| MS.gene09669.t1 | MTR_2g084090 | 45.846 | 325 | 160 | 5 | 10 | 331 | 7 | 318 | 3.15e-90 | 273 |
| MS.gene09669.t1 | MTR_2g029800 | 47.351 | 302 | 155 | 2 | 30 | 331 | 33 | 330 | 4.73e-90 | 273 |
| MS.gene09669.t1 | MTR_2g029850 | 47.059 | 306 | 158 | 2 | 26 | 331 | 29 | 330 | 7.63e-90 | 273 |
| MS.gene09669.t1 | MTR_4g029200 | 45.794 | 321 | 159 | 4 | 12 | 331 | 32 | 338 | 1.37e-89 | 271 |
| MS.gene09669.t1 | MTR_1g054205 | 46.205 | 303 | 158 | 3 | 30 | 331 | 28 | 326 | 1.81e-89 | 271 |
| MS.gene09669.t1 | MTR_3g094630 | 47.024 | 336 | 159 | 7 | 1 | 331 | 1 | 322 | 6.22e-89 | 270 |
| MS.gene09669.t1 | MTR_5g074970 | 49.032 | 310 | 141 | 5 | 26 | 331 | 30 | 326 | 1.31e-88 | 269 |
| MS.gene09669.t1 | MTR_4g083710 | 45.317 | 331 | 166 | 5 | 4 | 331 | 6 | 324 | 1.58e-88 | 268 |
| MS.gene09669.t1 | MTR_2g029815 | 44.109 | 331 | 181 | 2 | 1 | 331 | 4 | 330 | 2.15e-88 | 269 |
| MS.gene09669.t1 | MTR_2g029860 | 46.358 | 302 | 158 | 2 | 30 | 331 | 33 | 330 | 1.00e-87 | 267 |
| MS.gene09669.t1 | MTR_3g466180 | 47.401 | 327 | 152 | 4 | 6 | 331 | 16 | 323 | 1.67e-87 | 266 |
| MS.gene09669.t1 | MTR_5g074860 | 44.643 | 336 | 163 | 8 | 2 | 330 | 5 | 324 | 1.74e-87 | 266 |
| MS.gene09669.t1 | MTR_2g029820 | 46.689 | 302 | 157 | 2 | 30 | 331 | 33 | 330 | 2.86e-87 | 266 |
| MS.gene09669.t1 | MTR_4g125940 | 49.281 | 278 | 135 | 3 | 55 | 331 | 2 | 274 | 1.52e-86 | 261 |
| MS.gene09669.t1 | MTR_2g029830 | 46.254 | 307 | 159 | 4 | 26 | 331 | 28 | 329 | 2.06e-86 | 264 |
| MS.gene09669.t1 | MTR_2g084000 | 43.202 | 331 | 176 | 4 | 1 | 331 | 1 | 319 | 8.15e-86 | 261 |
| MS.gene09669.t1 | MTR_2g029750 | 45.338 | 311 | 156 | 3 | 26 | 331 | 29 | 330 | 1.94e-85 | 261 |
| MS.gene09669.t1 | MTR_7g026990 | 45.538 | 325 | 162 | 5 | 7 | 331 | 13 | 322 | 6.44e-85 | 259 |
| MS.gene09669.t1 | MTR_2g029910 | 45.724 | 304 | 160 | 3 | 29 | 331 | 33 | 332 | 1.17e-84 | 259 |
| MS.gene09669.t1 | MTR_5g074760 | 46.602 | 309 | 150 | 6 | 26 | 331 | 25 | 321 | 2.58e-84 | 258 |
| MS.gene09669.t1 | MTR_5g074710 | 47.097 | 310 | 147 | 7 | 26 | 331 | 25 | 321 | 3.39e-84 | 257 |
| MS.gene09669.t1 | MTR_4g074995 | 46.078 | 306 | 144 | 3 | 26 | 331 | 24 | 308 | 6.26e-84 | 256 |
| MS.gene09669.t1 | MTR_5g017850 | 45.277 | 307 | 160 | 4 | 26 | 331 | 27 | 326 | 7.12e-84 | 256 |
| MS.gene09669.t1 | MTR_2g028980 | 43.413 | 334 | 182 | 3 | 1 | 331 | 1 | 330 | 1.27e-83 | 257 |
| MS.gene09669.t1 | MTR_0155s0040 | 40.964 | 332 | 171 | 7 | 4 | 331 | 5 | 315 | 3.23e-83 | 254 |
| MS.gene09669.t1 | MTR_2g029740 | 45.277 | 307 | 154 | 4 | 30 | 331 | 33 | 330 | 3.54e-83 | 256 |
| MS.gene09669.t1 | MTR_5g074740 | 46.278 | 309 | 151 | 6 | 26 | 331 | 25 | 321 | 2.27e-82 | 253 |
| MS.gene09669.t1 | MTR_5g017860 | 45.603 | 307 | 159 | 4 | 26 | 331 | 27 | 326 | 4.24e-82 | 252 |
| MS.gene09669.t1 | MTR_4g030890 | 44.371 | 302 | 159 | 4 | 30 | 331 | 104 | 396 | 4.81e-81 | 252 |
| MS.gene09669.t1 | MTR_1g086320 | 42.943 | 333 | 178 | 5 | 4 | 331 | 8 | 333 | 8.79e-81 | 249 |
| MS.gene09669.t1 | MTR_4g074990 | 43.689 | 309 | 144 | 3 | 26 | 331 | 24 | 305 | 1.16e-80 | 248 |
| MS.gene09669.t1 | MTR_1g086490 | 42.183 | 339 | 179 | 4 | 4 | 331 | 8 | 340 | 1.99e-80 | 248 |
| MS.gene09669.t1 | MTR_3g467600 | 42.945 | 326 | 172 | 5 | 9 | 331 | 10 | 324 | 4.69e-80 | 247 |
| MS.gene09669.t1 | MTR_4g031140 | 43.750 | 304 | 158 | 5 | 30 | 331 | 32 | 324 | 3.56e-79 | 245 |
| MS.gene09669.t1 | MTR_3g072190 | 48.669 | 263 | 122 | 3 | 69 | 331 | 2 | 251 | 1.25e-78 | 241 |
| MS.gene09669.t1 | MTR_5g022870 | 41.088 | 331 | 180 | 7 | 1 | 331 | 1 | 316 | 3.06e-77 | 239 |
| MS.gene09669.t1 | MTR_4g046713 | 41.411 | 326 | 180 | 5 | 6 | 331 | 12 | 326 | 8.64e-77 | 238 |
| MS.gene09669.t1 | MTR_1g101830 | 41.088 | 331 | 180 | 8 | 3 | 331 | 5 | 322 | 1.50e-76 | 238 |
| MS.gene09669.t1 | MTR_1g077000 | 40.785 | 331 | 179 | 6 | 1 | 331 | 14 | 327 | 2.26e-76 | 238 |
| MS.gene09669.t1 | MTR_3g092990 | 41.493 | 335 | 183 | 6 | 1 | 331 | 1 | 326 | 2.72e-75 | 234 |
| MS.gene09669.t1 | MTR_8g075100 | 42.671 | 307 | 162 | 7 | 26 | 331 | 26 | 319 | 1.24e-74 | 233 |
| MS.gene09669.t1 | MTR_2g088770 | 42.244 | 303 | 167 | 5 | 30 | 331 | 30 | 325 | 5.80e-74 | 231 |
| MS.gene09669.t1 | MTR_7g107520 | 42.157 | 306 | 167 | 4 | 26 | 331 | 25 | 320 | 6.63e-73 | 228 |
| MS.gene09669.t1 | MTR_4g133800 | 44.884 | 303 | 152 | 7 | 30 | 331 | 45 | 333 | 1.22e-72 | 228 |
| MS.gene09669.t1 | MTR_4g114210 | 44.025 | 318 | 162 | 7 | 19 | 331 | 14 | 320 | 2.20e-71 | 224 |
| MS.gene09669.t1 | MTR_4g074980 | 40.061 | 327 | 160 | 5 | 5 | 331 | 4 | 294 | 5.91e-71 | 223 |
| MS.gene09669.t1 | MTR_7g086870 | 40.066 | 302 | 165 | 5 | 30 | 331 | 26 | 311 | 1.05e-70 | 223 |
| MS.gene09669.t1 | MTR_4g074980 | 44.531 | 256 | 136 | 1 | 5 | 260 | 4 | 253 | 1.86e-70 | 220 |
| MS.gene09669.t1 | MTR_2g029830 | 45.385 | 260 | 138 | 2 | 72 | 331 | 6 | 261 | 3.31e-70 | 220 |
| MS.gene09669.t1 | MTR_1g038680 | 42.484 | 306 | 166 | 6 | 30 | 331 | 33 | 332 | 5.06e-70 | 221 |
| MS.gene09669.t1 | MTR_2g437770 | 43.831 | 308 | 157 | 9 | 25 | 331 | 49 | 341 | 1.06e-69 | 221 |
| MS.gene09669.t1 | MTR_4g132490 | 37.273 | 330 | 198 | 6 | 3 | 331 | 6 | 327 | 3.25e-69 | 219 |
| MS.gene09669.t1 | MTR_7g086820 | 40.066 | 302 | 168 | 5 | 30 | 331 | 24 | 312 | 3.51e-68 | 216 |
| MS.gene09669.t1 | MTR_6g027440 | 41.060 | 302 | 166 | 6 | 30 | 331 | 25 | 314 | 3.73e-68 | 216 |
| MS.gene09669.t1 | MTR_1g025980 | 40.000 | 325 | 180 | 9 | 7 | 330 | 7 | 317 | 3.75e-68 | 216 |
| MS.gene09669.t1 | MTR_2g099175 | 39.583 | 336 | 181 | 7 | 7 | 331 | 11 | 335 | 3.77e-68 | 217 |
| MS.gene09669.t1 | MTR_7g029030 | 37.651 | 332 | 194 | 5 | 1 | 331 | 1 | 320 | 1.43e-67 | 214 |
| MS.gene09669.t1 | MTR_2g008710 | 39.634 | 328 | 185 | 6 | 7 | 331 | 8 | 325 | 3.03e-67 | 214 |
| MS.gene09669.t1 | MTR_1g090760 | 37.195 | 328 | 196 | 6 | 3 | 327 | 6 | 326 | 1.85e-65 | 209 |
| MS.gene09669.t1 | MTR_4g087965 | 40.446 | 314 | 176 | 6 | 19 | 327 | 35 | 342 | 2.31e-65 | 210 |
| MS.gene09669.t1 | MTR_5g074860 | 37.500 | 336 | 148 | 7 | 2 | 330 | 5 | 285 | 1.09e-64 | 206 |
| MS.gene09669.t1 | MTR_8g062780 | 38.217 | 314 | 174 | 5 | 26 | 331 | 23 | 324 | 2.47e-64 | 206 |
| MS.gene09669.t1 | MTR_3g105790 | 38.973 | 331 | 193 | 5 | 1 | 331 | 1 | 322 | 3.79e-64 | 206 |
| MS.gene09669.t1 | MTR_1g066380 | 37.821 | 312 | 178 | 5 | 23 | 331 | 25 | 323 | 4.84e-64 | 206 |
| MS.gene09669.t1 | MTR_3g092990 | 39.403 | 335 | 179 | 7 | 1 | 331 | 1 | 315 | 7.29e-64 | 205 |
| MS.gene09669.t1 | MTR_6g043460 | 37.037 | 324 | 184 | 7 | 6 | 327 | 19 | 324 | 8.02e-64 | 206 |
| MS.gene09669.t1 | MTR_6g043280 | 37.540 | 309 | 173 | 6 | 26 | 331 | 41 | 332 | 1.28e-63 | 205 |
| MS.gene09669.t1 | MTR_0286s0010 | 38.065 | 310 | 179 | 6 | 26 | 331 | 34 | 334 | 3.80e-63 | 204 |
| MS.gene09669.t1 | MTR_6g008075 | 38.065 | 310 | 179 | 6 | 26 | 331 | 34 | 334 | 3.80e-63 | 204 |
| MS.gene09669.t1 | MTR_1g066710 | 36.422 | 313 | 184 | 4 | 22 | 331 | 23 | 323 | 2.56e-62 | 201 |
| MS.gene09669.t1 | MTR_6g043240 | 37.338 | 308 | 173 | 6 | 26 | 331 | 42 | 331 | 3.16e-62 | 202 |
| MS.gene09669.t1 | MTR_1g066640 | 36.422 | 313 | 184 | 5 | 22 | 331 | 23 | 323 | 2.19e-61 | 199 |
| MS.gene09669.t1 | MTR_1g009750 | 37.805 | 328 | 188 | 8 | 8 | 331 | 13 | 328 | 3.59e-61 | 198 |
| MS.gene09669.t1 | MTR_4g127670 | 39.016 | 305 | 174 | 6 | 26 | 327 | 24 | 319 | 3.57e-60 | 196 |
| MS.gene09669.t1 | MTR_5g016010 | 35.629 | 334 | 205 | 5 | 1 | 330 | 1 | 328 | 7.81e-60 | 195 |
| MS.gene09669.t1 | MTR_2g067440 | 35.294 | 340 | 180 | 9 | 19 | 327 | 53 | 383 | 3.17e-58 | 192 |
| MS.gene09669.t1 | MTR_2g078610 | 35.000 | 340 | 182 | 7 | 20 | 327 | 70 | 402 | 1.06e-57 | 192 |
| MS.gene09669.t1 | MTR_1g066680 | 35.783 | 313 | 185 | 6 | 22 | 331 | 23 | 322 | 6.75e-57 | 187 |
| MS.gene09669.t1 | MTR_2g077990 | 35.000 | 340 | 182 | 7 | 20 | 327 | 70 | 402 | 2.84e-56 | 188 |
| MS.gene09669.t1 | MTR_2g008160 | 38.924 | 316 | 180 | 8 | 20 | 331 | 17 | 323 | 3.13e-55 | 183 |
| MS.gene09669.t1 | MTR_5g033470 | 39.172 | 314 | 174 | 10 | 26 | 331 | 73 | 377 | 5.85e-55 | 184 |
| MS.gene09669.t1 | MTR_4g095450 | 37.255 | 306 | 176 | 7 | 26 | 327 | 27 | 320 | 3.15e-54 | 180 |
| MS.gene09669.t1 | MTR_4g132110 | 35.806 | 310 | 182 | 6 | 26 | 331 | 32 | 328 | 1.23e-53 | 179 |
| MS.gene09669.t1 | MTR_1g066380 | 36.981 | 265 | 152 | 4 | 70 | 331 | 3 | 255 | 2.09e-53 | 176 |
| MS.gene09669.t1 | MTR_4g132110 | 35.873 | 315 | 180 | 8 | 26 | 331 | 32 | 333 | 5.85e-52 | 175 |
| MS.gene09669.t1 | MTR_2g078280 | 34.848 | 330 | 176 | 7 | 20 | 317 | 70 | 392 | 1.12e-51 | 176 |
| MS.gene09669.t1 | MTR_3g072210 | 46.939 | 196 | 91 | 4 | 137 | 331 | 55 | 238 | 6.12e-49 | 164 |
| MS.gene09669.t1 | MTR_1g009750 | 34.663 | 326 | 184 | 9 | 8 | 331 | 13 | 311 | 7.59e-49 | 166 |
| MS.gene09669.t1 | MTR_2g067450 | 34.505 | 313 | 195 | 5 | 20 | 330 | 5 | 309 | 1.09e-47 | 163 |
| MS.gene09669.t1 | MTR_2g008730 | 33.837 | 331 | 181 | 7 | 4 | 331 | 6 | 301 | 1.31e-47 | 162 |
| MS.gene09669.t1 | MTR_5g074700 | 40.417 | 240 | 114 | 7 | 95 | 331 | 1 | 214 | 9.73e-46 | 155 |
| MS.gene09669.t1 | MTR_0147s0010 | 33.841 | 328 | 173 | 6 | 25 | 330 | 76 | 381 | 1.12e-45 | 159 |
| MS.gene09669.t1 | MTR_2g008160 | 35.443 | 316 | 156 | 7 | 20 | 331 | 17 | 288 | 6.29e-44 | 152 |
| MS.gene09669.t1 | MTR_3g105790 | 38.800 | 250 | 148 | 3 | 82 | 331 | 2 | 246 | 1.95e-43 | 150 |
| MS.gene09669.t1 | MTR_7g072490 | 39.370 | 254 | 87 | 3 | 71 | 324 | 1 | 187 | 7.92e-43 | 147 |
| MS.gene09669.t1 | MTR_2g029880 | 42.784 | 194 | 97 | 4 | 138 | 331 | 9 | 188 | 3.21e-39 | 138 |
| MS.gene09669.t1 | MTR_2g008160 | 44.571 | 175 | 92 | 4 | 22 | 195 | 19 | 189 | 1.16e-37 | 134 |
| MS.gene09669.t1 | MTR_3g072260 | 51.128 | 133 | 65 | 0 | 1 | 133 | 1 | 133 | 6.47e-37 | 130 |
| MS.gene09669.t1 | MTR_3g462850 | 39.241 | 158 | 63 | 5 | 190 | 331 | 9 | 149 | 9.05e-26 | 100 |
| MS.gene09669.t1 | MTR_7g086790 | 41.667 | 120 | 66 | 2 | 73 | 192 | 17 | 132 | 1.67e-23 | 96.3 |
| MS.gene09669.t1 | MTR_1g089005 | 43.333 | 120 | 61 | 2 | 25 | 138 | 14 | 132 | 6.68e-22 | 90.9 |
| MS.gene09669.t1 | MTR_2g077980 | 28.571 | 294 | 161 | 12 | 78 | 331 | 1 | 285 | 9.04e-22 | 93.6 |
| MS.gene09669.t1 | MTR_4g114220 | 55.952 | 84 | 27 | 2 | 52 | 135 | 29 | 102 | 8.88e-21 | 87.4 |
| MS.gene09669.t1 | MTR_6g048160 | 61.972 | 71 | 23 | 2 | 65 | 135 | 22 | 88 | 1.89e-20 | 84.7 |
| MS.gene09669.t1 | MTR_7g086785 | 35.766 | 137 | 81 | 3 | 72 | 205 | 4 | 136 | 1.80e-18 | 80.9 |
| MS.gene09669.t1 | MTR_1g098320 | 42.683 | 82 | 44 | 1 | 250 | 331 | 46 | 124 | 1.36e-17 | 78.6 |
| MS.gene09669.t1 | MTR_4g012865 | 47.826 | 69 | 36 | 0 | 25 | 93 | 76 | 144 | 1.97e-16 | 75.9 |
| MS.gene09669.t1 | MTR_5g058120 | 30.357 | 168 | 96 | 5 | 162 | 327 | 7 | 155 | 3.18e-16 | 77.4 |
| MS.gene09669.t1 | MTR_4g031040 | 34.831 | 178 | 69 | 5 | 85 | 262 | 1 | 131 | 6.45e-16 | 73.9 |
| MS.gene09669.t1 | MTR_2g029930 | 36.207 | 116 | 45 | 4 | 7 | 108 | 1 | 101 | 4.00e-15 | 70.9 |
| MS.gene09669.t1 | MTR_3g107060 | 26.740 | 273 | 124 | 8 | 57 | 315 | 105 | 315 | 3.83e-14 | 72.4 |
| MS.gene09669.t1 | MTR_7g086810 | 34.513 | 113 | 48 | 1 | 31 | 143 | 11 | 97 | 3.61e-13 | 68.6 |
| MS.gene09669.t1 | MTR_7g107500 | 39.080 | 87 | 49 | 1 | 245 | 331 | 15 | 97 | 4.98e-13 | 64.7 |
| MS.gene09669.t1 | MTR_5g074770 | 39.785 | 93 | 48 | 3 | 241 | 330 | 21 | 108 | 6.49e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09669.t1 | AT2G35380 | 64.615 | 325 | 114 | 1 | 7 | 331 | 12 | 335 | 6.41e-155 | 437 |
| MS.gene09669.t1 | AT2G35380 | 66.397 | 247 | 83 | 0 | 85 | 331 | 1 | 247 | 1.25e-120 | 347 |
| MS.gene09669.t1 | AT3G50990 | 52.941 | 306 | 139 | 3 | 26 | 331 | 41 | 341 | 1.63e-110 | 325 |
| MS.gene09669.t1 | AT5G66390 | 53.268 | 306 | 138 | 2 | 26 | 331 | 33 | 333 | 2.90e-110 | 324 |
| MS.gene09669.t1 | AT2G18150 | 51.634 | 306 | 143 | 2 | 26 | 331 | 36 | 336 | 3.95e-106 | 314 |
| MS.gene09669.t1 | AT1G44970 | 52.941 | 306 | 140 | 3 | 26 | 331 | 45 | 346 | 6.99e-105 | 311 |
| MS.gene09669.t1 | AT4G36430 | 51.634 | 306 | 143 | 2 | 26 | 331 | 30 | 330 | 7.51e-104 | 308 |
| MS.gene09669.t1 | AT4G16270 | 51.133 | 309 | 140 | 5 | 26 | 331 | 48 | 348 | 1.55e-101 | 302 |
| MS.gene09669.t1 | AT2G18140 | 49.346 | 306 | 150 | 2 | 26 | 331 | 35 | 335 | 1.71e-99 | 297 |
| MS.gene09669.t1 | AT5G06720 | 46.319 | 326 | 170 | 3 | 6 | 331 | 13 | 333 | 1.64e-98 | 294 |
| MS.gene09669.t1 | AT1G68850 | 43.988 | 341 | 171 | 6 | 4 | 331 | 2 | 335 | 9.11e-94 | 282 |
| MS.gene09669.t1 | AT5G06730 | 43.252 | 326 | 180 | 3 | 6 | 331 | 14 | 334 | 1.24e-92 | 280 |
| MS.gene09669.t1 | AT5G58390 | 48.328 | 329 | 150 | 6 | 6 | 331 | 5 | 316 | 5.31e-92 | 277 |
| MS.gene09669.t1 | AT5G58400 | 47.720 | 329 | 152 | 7 | 6 | 331 | 14 | 325 | 5.64e-91 | 275 |
| MS.gene09669.t1 | AT3G32980 | 45.253 | 316 | 169 | 2 | 17 | 331 | 22 | 334 | 7.19e-91 | 275 |
| MS.gene09669.t1 | AT5G19890 | 46.154 | 325 | 164 | 6 | 9 | 331 | 12 | 327 | 9.38e-91 | 274 |
| MS.gene09669.t1 | AT2G38390 | 46.429 | 308 | 160 | 3 | 26 | 332 | 31 | 334 | 1.12e-88 | 270 |
| MS.gene09669.t1 | AT5G05340 | 46.104 | 308 | 151 | 5 | 26 | 331 | 30 | 324 | 1.01e-87 | 266 |
| MS.gene09669.t1 | AT3G49120 | 43.671 | 316 | 174 | 2 | 17 | 331 | 23 | 335 | 1.69e-87 | 267 |
| MS.gene09669.t1 | AT1G49570 | 46.557 | 305 | 158 | 3 | 26 | 329 | 48 | 348 | 5.85e-87 | 265 |
| MS.gene09669.t1 | AT3G49110 | 44.951 | 307 | 165 | 2 | 26 | 331 | 33 | 336 | 1.48e-86 | 265 |
| MS.gene09669.t1 | AT1G14550 | 42.598 | 331 | 172 | 6 | 4 | 331 | 6 | 321 | 1.31e-85 | 261 |
| MS.gene09669.t1 | AT2G22420 | 43.598 | 328 | 170 | 5 | 4 | 331 | 7 | 319 | 2.75e-85 | 260 |
| MS.gene09669.t1 | AT2G38380 | 46.230 | 305 | 159 | 3 | 29 | 332 | 34 | 334 | 3.23e-85 | 261 |
| MS.gene09669.t1 | AT4G08780 | 44.625 | 307 | 166 | 2 | 26 | 331 | 24 | 327 | 5.30e-85 | 260 |
| MS.gene09669.t1 | AT4G08770 | 45.277 | 307 | 164 | 2 | 26 | 331 | 24 | 327 | 5.68e-84 | 258 |
| MS.gene09669.t1 | AT1G14540 | 44.040 | 302 | 158 | 3 | 30 | 331 | 25 | 315 | 9.51e-84 | 256 |
| MS.gene09669.t1 | AT5G19880 | 44.277 | 332 | 172 | 5 | 3 | 331 | 8 | 329 | 2.01e-79 | 245 |
| MS.gene09669.t1 | AT3G03670 | 44.984 | 309 | 157 | 6 | 26 | 331 | 23 | 321 | 1.41e-77 | 240 |
| MS.gene09669.t1 | AT5G51890 | 41.896 | 327 | 176 | 9 | 8 | 331 | 7 | 322 | 6.07e-76 | 236 |
| MS.gene09669.t1 | AT2G41480 | 43.636 | 330 | 169 | 8 | 7 | 331 | 11 | 328 | 8.83e-75 | 233 |
| MS.gene09669.t1 | AT1G05260 | 42.345 | 307 | 169 | 5 | 26 | 331 | 26 | 325 | 2.35e-74 | 232 |
| MS.gene09669.t1 | AT3G21770 | 40.705 | 312 | 178 | 5 | 17 | 327 | 19 | 324 | 7.16e-73 | 229 |
| MS.gene09669.t1 | AT4G33420 | 40.549 | 328 | 175 | 7 | 4 | 331 | 18 | 325 | 1.11e-72 | 228 |
| MS.gene09669.t1 | AT5G17820 | 42.384 | 302 | 158 | 6 | 30 | 331 | 28 | 313 | 2.02e-72 | 227 |
| MS.gene09669.t1 | AT5G64120 | 43.709 | 302 | 158 | 5 | 30 | 331 | 39 | 328 | 2.83e-72 | 227 |
| MS.gene09669.t1 | AT4G33420 | 40.549 | 328 | 175 | 7 | 4 | 331 | 65 | 372 | 4.36e-72 | 228 |
| MS.gene09669.t1 | AT1G05240 | 42.122 | 311 | 168 | 6 | 24 | 331 | 24 | 325 | 1.83e-71 | 225 |
| MS.gene09669.t1 | AT1G05250 | 42.122 | 311 | 168 | 6 | 24 | 331 | 24 | 325 | 1.83e-71 | 225 |
| MS.gene09669.t1 | AT5G15180 | 42.244 | 303 | 165 | 6 | 30 | 331 | 36 | 329 | 2.08e-71 | 225 |
| MS.gene09669.t1 | AT1G71695 | 40.984 | 305 | 164 | 6 | 26 | 327 | 44 | 335 | 3.23e-71 | 225 |
| MS.gene09669.t1 | AT5G17820 | 42.384 | 302 | 158 | 6 | 30 | 331 | 81 | 366 | 9.71e-71 | 224 |
| MS.gene09669.t1 | AT4G11290 | 39.039 | 333 | 194 | 6 | 1 | 331 | 1 | 326 | 9.71e-71 | 223 |
| MS.gene09669.t1 | AT5G42180 | 41.463 | 328 | 174 | 7 | 4 | 330 | 6 | 316 | 2.41e-69 | 219 |
| MS.gene09669.t1 | AT2G39040 | 42.857 | 315 | 161 | 8 | 26 | 331 | 46 | 350 | 5.16e-69 | 219 |
| MS.gene09669.t1 | AT5G47000 | 38.323 | 334 | 190 | 6 | 1 | 331 | 10 | 330 | 4.19e-68 | 216 |
| MS.gene09669.t1 | AT4G31760 | 40.000 | 325 | 185 | 5 | 7 | 331 | 12 | 326 | 4.96e-68 | 216 |
| MS.gene09669.t1 | AT4G26010 | 41.584 | 303 | 157 | 6 | 30 | 331 | 26 | 309 | 1.74e-67 | 214 |
| MS.gene09669.t1 | AT4G26010 | 41.584 | 303 | 157 | 6 | 30 | 331 | 54 | 337 | 4.56e-67 | 214 |
| MS.gene09669.t1 | AT3G28200 | 38.312 | 308 | 176 | 4 | 26 | 331 | 21 | 316 | 5.14e-67 | 213 |
| MS.gene09669.t1 | AT5G39580 | 41.566 | 332 | 180 | 8 | 1 | 331 | 1 | 319 | 5.92e-67 | 213 |
| MS.gene09669.t1 | AT5G64110 | 41.141 | 333 | 185 | 5 | 1 | 331 | 7 | 330 | 9.67e-67 | 213 |
| MS.gene09669.t1 | AT5G40150 | 39.610 | 308 | 173 | 5 | 26 | 331 | 32 | 328 | 3.87e-66 | 211 |
| MS.gene09669.t1 | AT3G01190 | 40.061 | 327 | 178 | 8 | 6 | 331 | 12 | 321 | 1.41e-65 | 209 |
| MS.gene09669.t1 | AT4G37530 | 40.064 | 312 | 178 | 4 | 23 | 331 | 24 | 329 | 1.72e-65 | 209 |
| MS.gene09669.t1 | AT4G17690 | 40.323 | 310 | 168 | 6 | 26 | 331 | 26 | 322 | 2.45e-65 | 209 |
| MS.gene09669.t1 | AT1G24110 | 40.328 | 305 | 171 | 6 | 26 | 327 | 22 | 318 | 2.56e-65 | 209 |
| MS.gene09669.t1 | AT1G34510 | 41.042 | 307 | 161 | 6 | 26 | 331 | 22 | 309 | 4.59e-65 | 208 |
| MS.gene09669.t1 | AT4G37520 | 39.806 | 309 | 177 | 4 | 26 | 331 | 27 | 329 | 5.32e-65 | 208 |
| MS.gene09669.t1 | AT2G34060 | 41.424 | 309 | 168 | 7 | 26 | 328 | 42 | 343 | 1.13e-63 | 206 |
| MS.gene09669.t1 | AT2G18980 | 40.968 | 310 | 168 | 6 | 26 | 331 | 25 | 323 | 4.49e-63 | 203 |
| MS.gene09669.t1 | AT2G24800 | 40.645 | 310 | 169 | 6 | 26 | 331 | 31 | 329 | 4.88e-63 | 203 |
| MS.gene09669.t1 | AT4G37520 | 39.159 | 309 | 176 | 5 | 26 | 331 | 27 | 326 | 5.91e-62 | 200 |
| MS.gene09669.t1 | AT4G25980 | 39.339 | 333 | 183 | 8 | 4 | 331 | 8 | 326 | 8.61e-62 | 200 |
| MS.gene09669.t1 | AT1G77100 | 39.940 | 333 | 178 | 8 | 6 | 331 | 2 | 319 | 8.86e-62 | 200 |
| MS.gene09669.t1 | AT4G33870 | 35.988 | 339 | 171 | 6 | 26 | 327 | 68 | 397 | 4.14e-61 | 201 |
| MS.gene09669.t1 | AT2G43480 | 39.936 | 313 | 169 | 8 | 26 | 331 | 35 | 335 | 2.03e-60 | 197 |
| MS.gene09669.t1 | AT2G37130 | 37.338 | 308 | 175 | 6 | 29 | 331 | 2 | 296 | 2.09e-60 | 196 |
| MS.gene09669.t1 | AT2G37130 | 37.143 | 315 | 180 | 6 | 22 | 331 | 26 | 327 | 3.72e-60 | 196 |
| MS.gene09669.t1 | AT4G30170 | 38.854 | 314 | 175 | 8 | 23 | 331 | 24 | 325 | 1.25e-59 | 194 |
| MS.gene09669.t1 | AT5G14130 | 34.513 | 339 | 186 | 6 | 4 | 331 | 17 | 330 | 1.46e-59 | 194 |
| MS.gene09669.t1 | AT5G24070 | 37.700 | 313 | 176 | 7 | 26 | 331 | 35 | 335 | 3.62e-59 | 194 |
| MS.gene09669.t1 | AT5G14130 | 34.513 | 339 | 186 | 6 | 4 | 331 | 58 | 371 | 5.58e-59 | 194 |
| MS.gene09669.t1 | AT3G49960 | 37.386 | 329 | 191 | 7 | 7 | 331 | 12 | 329 | 1.41e-58 | 192 |
| MS.gene09669.t1 | AT5G64100 | 41.118 | 304 | 164 | 6 | 30 | 331 | 41 | 331 | 4.79e-58 | 191 |
| MS.gene09669.t1 | AT4G21960 | 37.742 | 310 | 176 | 5 | 26 | 331 | 31 | 327 | 1.55e-57 | 189 |
| MS.gene09669.t1 | AT1G30870 | 39.677 | 310 | 170 | 8 | 25 | 331 | 50 | 345 | 1.33e-56 | 187 |
| MS.gene09669.t1 | AT5G67400 | 35.736 | 333 | 202 | 5 | 5 | 331 | 3 | 329 | 1.75e-56 | 186 |
| MS.gene09669.t1 | AT3G17070 | 36.508 | 315 | 182 | 9 | 24 | 331 | 36 | 339 | 7.29e-55 | 182 |
| MS.gene09669.t1 | AT4G37530 | 39.382 | 259 | 151 | 3 | 23 | 278 | 24 | 279 | 5.96e-52 | 173 |
| MS.gene09669.t1 | AT5G22410 | 33.832 | 334 | 199 | 10 | 1 | 328 | 5 | 322 | 4.64e-50 | 170 |
| MS.gene09669.t1 | AT5G39580 | 43.182 | 220 | 116 | 6 | 1 | 217 | 1 | 214 | 5.92e-43 | 148 |
| MS.gene09669.t1 | AT4G25980 | 44.737 | 190 | 97 | 5 | 4 | 193 | 53 | 234 | 3.97e-41 | 145 |
| MS.gene09669.t1 | AT3G17070 | 34.035 | 285 | 169 | 10 | 54 | 331 | 4 | 276 | 6.29e-40 | 142 |
| MS.gene09669.t1 | AT2G24800 | 45.509 | 167 | 87 | 2 | 26 | 192 | 31 | 193 | 2.53e-37 | 134 |
| MS.gene09669.t1 | AT3G42570 | 34.459 | 148 | 82 | 4 | 46 | 191 | 13 | 147 | 1.32e-15 | 73.6 |
| MS.gene09669.t1 | AT4G32320 | 26.667 | 270 | 122 | 7 | 57 | 312 | 114 | 321 | 1.55e-12 | 67.8 |
Find 75 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCCTCTAAAGATGAATT+TGG | 0.209973 | 5.2:-6125659 | None:intergenic |
| TGTCAAATATTCACACTCTA+AGG | 0.214649 | 5.2:+6124816 | MS.gene09669:CDS |
| GGAAATATTAATGTTCTTAC+TGG | 0.240350 | 5.2:+6126461 | MS.gene09669:CDS |
| TGCTCCAAATTCATCTTTAG+AGG | 0.250110 | 5.2:+6125655 | MS.gene09669:CDS |
| TTGTCATCCCTTCCGGTAAT+AGG | 0.256822 | 5.2:-6126236 | None:intergenic |
| AAGGATTAGGAGGCAGGTTT+GGG | 0.281317 | 5.2:+6126379 | MS.gene09669:CDS |
| CCACGTAAAGAGTTCAAATT+TGG | 0.287872 | 5.2:-6125208 | None:intergenic |
| GTGCGATGCATCGGTACTTT+TGG | 0.290206 | 5.2:+6125147 | MS.gene09669:CDS |
| ATTGAAGGAAAAGGCTTGTT+AGG | 0.300624 | 5.2:+6126320 | MS.gene09669:CDS |
| GAAGGATTAGGAGGCAGGTT+TGG | 0.303107 | 5.2:+6126378 | MS.gene09669:CDS |
| GAAGACCTTGTGGTTCTATC+AGG | 0.316631 | 5.2:+6125716 | MS.gene09669:CDS |
| GGGCAAGATGTTTAAGCTTC+AGG | 0.349687 | 5.2:+6126120 | MS.gene09669:CDS |
| ACCAAGATGGGATGTGTGGC+TGG | 0.353196 | 5.2:+6125580 | MS.gene09669:CDS |
| TGCAAATTTGTCATCCCTTC+CGG | 0.355868 | 5.2:-6126243 | None:intergenic |
| TATTGATTATCAAACCGTTT+TGG | 0.372482 | 5.2:-6126284 | None:intergenic |
| TTGTAGATTTGTCAACCCTT+AGG | 0.373734 | 5.2:+6126508 | MS.gene09669:CDS |
| ATAAACATTATTGAAGGAAA+AGG | 0.389138 | 5.2:+6126311 | MS.gene09669:CDS |
| TGCTAAGTCTATGATTAAGA+TGG | 0.404255 | 5.2:+6126439 | MS.gene09669:CDS |
| AAGACTTTGATGGAAGGATT+AGG | 0.406088 | 5.2:+6126366 | MS.gene09669:CDS |
| ATCTTGCCCTTCCTATTGTA+TGG | 0.411212 | 5.2:-6126106 | None:intergenic |
| CCTTCCGGTAATAGGACATA+TGG | 0.429530 | 5.2:-6126228 | None:intergenic |
| TTGATCAGTCAAGACTTTGA+TGG | 0.433237 | 5.2:+6126356 | MS.gene09669:CDS |
| CGGTCCATATGTCCTATTAC+CGG | 0.433238 | 5.2:+6126224 | MS.gene09669:CDS |
| TGCTCGTGATGCTGTTGAAT+TGG | 0.436779 | 5.2:+6125315 | MS.gene09669:CDS |
| AATTTGGAGCAGGGATGAAT+AGG | 0.442823 | 5.2:-6125643 | None:intergenic |
| TGTAGATTTGTCAACCCTTA+GGG | 0.445313 | 5.2:+6126509 | MS.gene09669:CDS |
| CCCAGCCACACATCCCATCT+TGG | 0.449198 | 5.2:-6125581 | None:intergenic |
| GATGTTTAAGCTTCAGGCAG+AGG | 0.452364 | 5.2:+6126126 | MS.gene09669:CDS |
| TGATGGAAGGATTAGGAGGC+AGG | 0.457704 | 5.2:+6126373 | MS.gene09669:CDS |
| TACTTCATAAACATTATTGA+AGG | 0.460027 | 5.2:+6126305 | MS.gene09669:CDS |
| GTCAAATATTCACACTCTAA+GGG | 0.462872 | 5.2:+6124817 | MS.gene09669:CDS |
| GATAAAGTATTTACTTGAAG+AGG | 0.463873 | 5.2:+6125249 | MS.gene09669:CDS |
| GGATGTGTGGCTGGGGAGGA+AGG | 0.466895 | 5.2:+6125589 | MS.gene09669:CDS |
| AAAACAGGTAGCCATACAAT+AGG | 0.468505 | 5.2:+6126095 | MS.gene09669:intron |
| GCTAAGTCTATGATTAAGAT+GGG | 0.481139 | 5.2:+6126440 | MS.gene09669:CDS |
| CAAGATGGGATGTGTGGCTG+GGG | 0.483675 | 5.2:+6125582 | MS.gene09669:CDS |
| CCAAGATGGGATGTGTGGCT+GGG | 0.493544 | 5.2:+6125581 | MS.gene09669:CDS |
| TCTAAAGATGAATTTGGAGC+AGG | 0.507269 | 5.2:-6125653 | None:intergenic |
| TTACCATAACAAAACAATCA+TGG | 0.512399 | 5.2:-6124970 | None:intergenic |
| TGAAGAGAGGAGGACCAAGA+TGG | 0.516172 | 5.2:+6125567 | MS.gene09669:intron |
| GAAGTGAAGGTGAAATAAGA+AGG | 0.517168 | 5.2:+6126483 | MS.gene09669:CDS |
| TCTCACTATCCCTTCAGCTA+AGG | 0.524756 | 5.2:-6124882 | None:intergenic |
| ATGTGCTGATATTCTTGCAA+TGG | 0.525272 | 5.2:+6125291 | MS.gene09669:CDS |
| CTCACTATCCCTTCAGCTAA+GGG | 0.526913 | 5.2:-6124881 | None:intergenic |
| CCAAATTTGAACTCTTTACG+TGG | 0.530593 | 5.2:+6125208 | MS.gene09669:CDS |
| GATGGGATGTGTGGCTGGGG+AGG | 0.531399 | 5.2:+6125585 | MS.gene09669:CDS |
| ATGACAAGTGAGAAAGAAGC+TGG | 0.532451 | 5.2:+6125184 | MS.gene09669:CDS |
| TCTTGTTCATGATTACTACA+AGG | 0.533843 | 5.2:+6124850 | MS.gene09669:CDS |
| CTCCACTGAAACTTGACTCA+AGG | 0.536977 | 5.2:-6125616 | None:intergenic |
| GAAGAGAGGAGGACCAAGAT+GGG | 0.542771 | 5.2:+6125568 | MS.gene09669:intron |
| TGGAGCAGGGATGAATAGGC+TGG | 0.545060 | 5.2:-6125639 | None:intergenic |
| TCCCTTGAGTCAAGTTTCAG+TGG | 0.555521 | 5.2:+6125614 | MS.gene09669:CDS |
| ATATAAGGGGTGCGATGCAT+CGG | 0.563534 | 5.2:+6125138 | MS.gene09669:intron |
| CAGGTAGCCATACAATAGGA+AGG | 0.566465 | 5.2:+6126099 | MS.gene09669:intron |
| AATGTTCTTACTGGAAGTGA+AGG | 0.567607 | 5.2:+6126470 | MS.gene09669:CDS |
| TCCACTGAAACTTGACTCAA+GGG | 0.577180 | 5.2:-6125615 | None:intergenic |
| AGTAGCGACGCTGCTATACG+TGG | 0.583453 | 5.2:-6124935 | None:intergenic |
| TCAGTCAAGACTTTGATGGA+AGG | 0.590453 | 5.2:+6126360 | MS.gene09669:CDS |
| TCAAATATTCACACTCTAAG+GGG | 0.598238 | 5.2:+6124818 | MS.gene09669:CDS |
| ACTTTGATGGAAGGATTAGG+AGG | 0.606364 | 5.2:+6126369 | MS.gene09669:CDS |
| CCATATGTCCTATTACCGGA+AGG | 0.607440 | 5.2:+6126228 | MS.gene09669:CDS |
| CTAAAGATGAATTTGGAGCA+GGG | 0.616673 | 5.2:-6125652 | None:intergenic |
| TCTGGATATTGAAGACCTTG+TGG | 0.629490 | 5.2:+6125706 | MS.gene09669:CDS |
| TTTGGTGTTTGAAAATCAAG+GGG | 0.635113 | 5.2:-6126266 | None:intergenic |
| GGACCGTAGGACTCTTCTGA+AGG | 0.636543 | 5.2:-6126207 | None:intergenic |
| AGGTAGCCATACAATAGGAA+GGG | 0.640344 | 5.2:+6126100 | MS.gene09669:intron |
| CATATGTCCTATTACCGGAA+GGG | 0.646460 | 5.2:+6126229 | MS.gene09669:CDS |
| AAGATCAGTAATAGTCTCAG+AGG | 0.648692 | 5.2:-6124782 | None:intergenic |
| AGGATTAGGAGGCAGGTTTG+GGG | 0.648716 | 5.2:+6126380 | MS.gene09669:CDS |
| TAATAGGACATATGGACCGT+AGG | 0.650725 | 5.2:-6126220 | None:intergenic |
| CAACCTTCAGAAGAGTCCTA+CGG | 0.678058 | 5.2:+6126204 | MS.gene09669:CDS |
| GAGGACCAAGATGGGATGTG+TGG | 0.689019 | 5.2:+6125576 | MS.gene09669:CDS |
| TCAGCACATGAAACAGTGAG+AGG | 0.713764 | 5.2:-6125277 | None:intergenic |
| ATATACCTGATAGAACCACA+AGG | 0.769483 | 5.2:-6125721 | None:intergenic |
| GATAGTGAGACATAACGTAG+CGG | 0.771195 | 5.2:+6124895 | MS.gene09669:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACATTGTTTATTTCA+TGG | - | chr5.2:6125530-6125549 | None:intergenic | 15.0% |
| !! | TTCTTACTAATTAATTAGAA+GGG | + | chr5.2:6126068-6126087 | MS.gene09669:intron | 15.0% |
| !!! | AATTAATAATTTTAAGCAAC+AGG | + | chr5.2:6125682-6125701 | MS.gene09669:CDS | 15.0% |
| !!! | ATTAATAATTTTAAGCAACA+GGG | + | chr5.2:6125683-6125702 | MS.gene09669:CDS | 15.0% |
| !!! | TGACAGTTTTAAATAAAATT+TGG | - | chr5.2:6125940-6125959 | None:intergenic | 15.0% |
| !! | AATATTACTACATTGTTCAT+AGG | + | chr5.2:6125500-6125519 | MS.gene09669:intron | 20.0% |
| !! | AATTTAGTCCAAAAAATTGT+AGG | + | chr5.2:6125778-6125797 | MS.gene09669:intron | 20.0% |
| !! | ATAAACATTATTGAAGGAAA+AGG | + | chr5.2:6126311-6126330 | MS.gene09669:CDS | 20.0% |
| !! | ATATTACTACATTGTTCATA+GGG | + | chr5.2:6125501-6125520 | MS.gene09669:intron | 20.0% |
| !! | ATTTAGTCCAAAAAATTGTA+GGG | + | chr5.2:6125779-6125798 | MS.gene09669:intron | 20.0% |
| !! | GTTCTTACTAATTAATTAGA+AGG | + | chr5.2:6126067-6126086 | MS.gene09669:intron | 20.0% |
| !! | GTTGTTGAAAATGAATATAA+GGG | + | chr5.2:6125124-6125143 | MS.gene09669:intron | 20.0% |
| !! | TACTTCATAAACATTATTGA+AGG | + | chr5.2:6126305-6126324 | MS.gene09669:CDS | 20.0% |
| !! | TCTTACTAATTAATTAGAAG+GGG | + | chr5.2:6126069-6126088 | MS.gene09669:intron | 20.0% |
| !! | TGTATTGAATCAAGATAATT+TGG | - | chr5.2:6125870-6125889 | None:intergenic | 20.0% |
| !! | TTGTTGAAAATGAATATAAG+GGG | + | chr5.2:6125125-6125144 | MS.gene09669:intron | 20.0% |
| !!! | AAAGAAAAGTTTTTCATTAG+AGG | - | chr5.2:6126411-6126430 | None:intergenic | 20.0% |
| !!! | TACAATTTTTTGGACTAAAT+TGG | - | chr5.2:6125779-6125798 | None:intergenic | 20.0% |
| ! | CTGTTCGGTTATTAAAAAAT+TGG | - | chr5.2:6125394-6125413 | None:intergenic | 25.0% |
| ! | CTTACTAATTAATTAGAAGG+GGG | + | chr5.2:6126070-6126089 | MS.gene09669:intron | 25.0% |
| ! | GGAAATATTAATGTTCTTAC+TGG | + | chr5.2:6126461-6126480 | MS.gene09669:CDS | 25.0% |
| ! | GGTTGTTGAAAATGAATATA+AGG | + | chr5.2:6125123-6125142 | MS.gene09669:intron | 25.0% |
| ! | TTACCATAACAAAACAATCA+TGG | - | chr5.2:6124973-6124992 | None:intergenic | 25.0% |
| !! | AATCTTGAAGTACTTATACA+TGG | - | chr5.2:6125000-6125019 | None:intergenic | 25.0% |
| !! | GATAAAGTATTTACTTGAAG+AGG | + | chr5.2:6125249-6125268 | MS.gene09669:CDS | 25.0% |
| !! | TGTTTTACCCTACAATTTTT+TGG | - | chr5.2:6125789-6125808 | None:intergenic | 25.0% |
| !! | TTGATTTTCAAACACCAAAA+CGG | + | chr5.2:6126270-6126289 | MS.gene09669:CDS | 25.0% |
| !! | TTTTGTCTGTCATACATTTT+TGG | + | chr5.2:6125102-6125121 | MS.gene09669:intron | 25.0% |
| !!! | TATTGATTATCAAACCGTTT+TGG | - | chr5.2:6126287-6126306 | None:intergenic | 25.0% |
| !!! | TTTTGGTGTTTGAAAATCAA+GGG | - | chr5.2:6126270-6126289 | None:intergenic | 25.0% |
| AATAATTGAAAACACCGTGT+AGG | - | chr5.2:6125065-6125084 | None:intergenic | 30.0% | |
| AGAAAAAGAGTAGAGAGAAA+AGG | - | chr5.2:6125353-6125372 | None:intergenic | 30.0% | |
| ATTGATTGAACTGTTCAGTT+CGG | + | chr5.2:6125438-6125457 | MS.gene09669:intron | 30.0% | |
| CTGCTATTAACTAGTTCAAT+TGG | + | chr5.2:6125477-6125496 | MS.gene09669:intron | 30.0% | |
| GCTAAGTCTATGATTAAGAT+GGG | + | chr5.2:6126440-6126459 | MS.gene09669:CDS | 30.0% | |
| GTCAAATATTCACACTCTAA+GGG | + | chr5.2:6124817-6124836 | MS.gene09669:CDS | 30.0% | |
| TCAAATATTCACACTCTAAG+GGG | + | chr5.2:6124818-6124837 | MS.gene09669:CDS | 30.0% | |
| TCTTGTTCATGATTACTACA+AGG | + | chr5.2:6124850-6124869 | MS.gene09669:CDS | 30.0% | |
| TGCTAAGTCTATGATTAAGA+TGG | + | chr5.2:6126439-6126458 | MS.gene09669:CDS | 30.0% | |
| TGTCAAATATTCACACTCTA+AGG | + | chr5.2:6124816-6124835 | MS.gene09669:CDS | 30.0% | |
| ! | AAAGCCTCTAAAGATGAATT+TGG | - | chr5.2:6125662-6125681 | None:intergenic | 30.0% |
| ! | TTCTCTCTACTCTTTTTCTT+TGG | + | chr5.2:6125354-6125373 | MS.gene09669:intron | 30.0% |
| !! | CTTCCATGATTGTTTTGTTA+TGG | + | chr5.2:6124967-6124986 | MS.gene09669:CDS | 30.0% |
| !! | TTTGGTGTTTGAAAATCAAG+GGG | - | chr5.2:6126269-6126288 | None:intergenic | 30.0% |
| !!! | CTATTGTTTGTTTTGAAGAG+AGG | + | chr5.2:6125554-6125573 | MS.gene09669:intron | 30.0% |
| !!! | GTTTTGGTGTTTGAAAATCA+AGG | - | chr5.2:6126271-6126290 | None:intergenic | 30.0% |
| AAAAATGTCCCTTAGCTGAA+GGG | + | chr5.2:6124873-6124892 | MS.gene09669:CDS | 35.0% | |
| AAAACAGGTAGCCATACAAT+AGG | + | chr5.2:6126095-6126114 | MS.gene09669:intron | 35.0% | |
| AACTGACATTTACTGCTGTT+CGG | - | chr5.2:6125409-6125428 | None:intergenic | 35.0% | |
| AAGACTTTGATGGAAGGATT+AGG | + | chr5.2:6126366-6126385 | MS.gene09669:CDS | 35.0% | |
| AAGATCAGTAATAGTCTCAG+AGG | - | chr5.2:6124785-6124804 | None:intergenic | 35.0% | |
| AATGTTCTTACTGGAAGTGA+AGG | + | chr5.2:6126470-6126489 | MS.gene09669:CDS | 35.0% | |
| AATTAGAAGGGGGAAAAAAC+AGG | + | chr5.2:6126080-6126099 | MS.gene09669:intron | 35.0% | |
| ATATACCTGATAGAACCACA+AGG | - | chr5.2:6125724-6125743 | None:intergenic | 35.0% | |
| CCAAATTTGAACTCTTTACG+TGG | + | chr5.2:6125208-6125227 | MS.gene09669:CDS | 35.0% | |
| CCACGTAAAGAGTTCAAATT+TGG | - | chr5.2:6125211-6125230 | None:intergenic | 35.0% | |
| GAAGTGAAGGTGAAATAAGA+AGG | + | chr5.2:6126483-6126502 | MS.gene09669:CDS | 35.0% | |
| TGCTCCAAATTCATCTTTAG+AGG | + | chr5.2:6125655-6125674 | MS.gene09669:CDS | 35.0% | |
| TTGATCAGTCAAGACTTTGA+TGG | + | chr5.2:6126356-6126375 | MS.gene09669:CDS | 35.0% | |
| ! | ATGTGCTGATATTCTTGCAA+TGG | + | chr5.2:6125291-6125310 | MS.gene09669:CDS | 35.0% |
| ! | ATTGAAGGAAAAGGCTTGTT+AGG | + | chr5.2:6126320-6126339 | MS.gene09669:CDS | 35.0% |
| ! | CTAAAGATGAATTTGGAGCA+GGG | - | chr5.2:6125655-6125674 | None:intergenic | 35.0% |
| ! | TAATTTTAAGCAACAGGGTC+TGG | + | chr5.2:6125688-6125707 | MS.gene09669:CDS | 35.0% |
| ! | TCTAAAGATGAATTTGGAGC+AGG | - | chr5.2:6125656-6125675 | None:intergenic | 35.0% |
| !!! | TTGTTTGTTTTGAAGAGAGG+AGG | + | chr5.2:6125557-6125576 | MS.gene09669:intron | 35.0% |
| ACTTTGATGGAAGGATTAGG+AGG | + | chr5.2:6126369-6126388 | MS.gene09669:CDS | 40.0% | |
| AGGTAGCCATACAATAGGAA+GGG | + | chr5.2:6126100-6126119 | MS.gene09669:intron | 40.0% | |
| ATCTTGCCCTTCCTATTGTA+TGG | - | chr5.2:6126109-6126128 | None:intergenic | 40.0% | |
| ATGACAAGTGAGAAAGAAGC+TGG | + | chr5.2:6125184-6125203 | MS.gene09669:CDS | 40.0% | |
| CATATGTCCTATTACCGGAA+GGG | + | chr5.2:6126229-6126248 | MS.gene09669:CDS | 40.0% | |
| GAAAAATGTCCCTTAGCTGA+AGG | + | chr5.2:6124872-6124891 | MS.gene09669:CDS | 40.0% | |
| GATAGTGAGACATAACGTAG+CGG | + | chr5.2:6124895-6124914 | MS.gene09669:CDS | 40.0% | |
| TAATAGGACATATGGACCGT+AGG | - | chr5.2:6126223-6126242 | None:intergenic | 40.0% | |
| TCAGTCAAGACTTTGATGGA+AGG | + | chr5.2:6126360-6126379 | MS.gene09669:CDS | 40.0% | |
| TCCACTGAAACTTGACTCAA+GGG | - | chr5.2:6125618-6125637 | None:intergenic | 40.0% | |
| TCTGGATATTGAAGACCTTG+TGG | + | chr5.2:6125706-6125725 | MS.gene09669:CDS | 40.0% | |
| TGCAAATTTGTCATCCCTTC+CGG | - | chr5.2:6126246-6126265 | None:intergenic | 40.0% | |
| ! | AATTTGGAGCAGGGATGAAT+AGG | - | chr5.2:6125646-6125665 | None:intergenic | 40.0% |
| !! | GTACTTTTGGACAGTGTTGA+GGG | + | chr5.2:6125160-6125179 | MS.gene09669:CDS | 40.0% |
| AAGGATTAGGAGGCAGGTTT+GGG | + | chr5.2:6126379-6126398 | MS.gene09669:CDS | 45.0% | |
| CAACCTTCAGAAGAGTCCTA+CGG | + | chr5.2:6126204-6126223 | MS.gene09669:CDS | 45.0% | |
| CAGGTAGCCATACAATAGGA+AGG | + | chr5.2:6126099-6126118 | MS.gene09669:intron | 45.0% | |
| CCATATGTCCTATTACCGGA+AGG | + | chr5.2:6126228-6126247 | MS.gene09669:CDS | 45.0% | |
| CCTTCCGGTAATAGGACATA+TGG | - | chr5.2:6126231-6126250 | None:intergenic | 45.0% | |
| CGGTCCATATGTCCTATTAC+CGG | + | chr5.2:6126224-6126243 | MS.gene09669:CDS | 45.0% | |
| CTCACTATCCCTTCAGCTAA+GGG | - | chr5.2:6124884-6124903 | None:intergenic | 45.0% | |
| CTCCACTGAAACTTGACTCA+AGG | - | chr5.2:6125619-6125638 | None:intergenic | 45.0% | |
| GATGTTTAAGCTTCAGGCAG+AGG | + | chr5.2:6126126-6126145 | MS.gene09669:CDS | 45.0% | |
| GGGCAAGATGTTTAAGCTTC+AGG | + | chr5.2:6126120-6126139 | MS.gene09669:CDS | 45.0% | |
| TCAGCACATGAAACAGTGAG+AGG | - | chr5.2:6125280-6125299 | None:intergenic | 45.0% | |
| TCCCTTGAGTCAAGTTTCAG+TGG | + | chr5.2:6125614-6125633 | MS.gene09669:CDS | 45.0% | |
| TCTCACTATCCCTTCAGCTA+AGG | - | chr5.2:6124885-6124904 | None:intergenic | 45.0% | |
| TGCTCGTGATGCTGTTGAAT+TGG | + | chr5.2:6125315-6125334 | MS.gene09669:CDS | 45.0% | |
| TTGTCATCCCTTCCGGTAAT+AGG | - | chr5.2:6126239-6126258 | None:intergenic | 45.0% | |
| ! | ATATAAGGGGTGCGATGCAT+CGG | + | chr5.2:6125138-6125157 | MS.gene09669:intron | 45.0% |
| ! | GAAGACCTTGTGGTTCTATC+AGG | + | chr5.2:6125716-6125735 | MS.gene09669:CDS | 45.0% |
| ! | GGTACTTTTGGACAGTGTTG+AGG | + | chr5.2:6125159-6125178 | MS.gene09669:CDS | 45.0% |
| AGGATTAGGAGGCAGGTTTG+GGG | + | chr5.2:6126380-6126399 | MS.gene09669:CDS | 50.0% | |
| GAAGAGAGGAGGACCAAGAT+GGG | + | chr5.2:6125568-6125587 | MS.gene09669:intron | 50.0% | |
| GAAGGATTAGGAGGCAGGTT+TGG | + | chr5.2:6126378-6126397 | MS.gene09669:CDS | 50.0% | |
| TGAAGAGAGGAGGACCAAGA+TGG | + | chr5.2:6125567-6125586 | MS.gene09669:intron | 50.0% | |
| TGATGGAAGGATTAGGAGGC+AGG | + | chr5.2:6126373-6126392 | MS.gene09669:CDS | 50.0% | |
| !! | GTGCGATGCATCGGTACTTT+TGG | + | chr5.2:6125147-6125166 | MS.gene09669:CDS | 50.0% |
| ACCAAGATGGGATGTGTGGC+TGG | + | chr5.2:6125580-6125599 | MS.gene09669:CDS | 55.0% | |
| AGTAGCGACGCTGCTATACG+TGG | - | chr5.2:6124938-6124957 | None:intergenic | 55.0% | |
| CAAGATGGGATGTGTGGCTG+GGG | + | chr5.2:6125582-6125601 | MS.gene09669:CDS | 55.0% | |
| CCAAGATGGGATGTGTGGCT+GGG | + | chr5.2:6125581-6125600 | MS.gene09669:CDS | 55.0% | |
| CCACTTGCGCTAGACCTACA+CGG | + | chr5.2:6125048-6125067 | MS.gene09669:intron | 55.0% | |
| GAGGACCAAGATGGGATGTG+TGG | + | chr5.2:6125576-6125595 | MS.gene09669:CDS | 55.0% | |
| GGACCGTAGGACTCTTCTGA+AGG | - | chr5.2:6126210-6126229 | None:intergenic | 55.0% | |
| GTAGGTCTAGCGCAAGTGGT+TGG | - | chr5.2:6125047-6125066 | None:intergenic | 55.0% | |
| TGGAGCAGGGATGAATAGGC+TGG | - | chr5.2:6125642-6125661 | None:intergenic | 55.0% | |
| CCCAGCCACACATCCCATCT+TGG | - | chr5.2:6125584-6125603 | None:intergenic | 60.0% | |
| CCGTGTAGGTCTAGCGCAAG+TGG | - | chr5.2:6125051-6125070 | None:intergenic | 60.0% | |
| GATGGGATGTGTGGCTGGGG+AGG | + | chr5.2:6125585-6125604 | MS.gene09669:CDS | 65.0% | |
| GGATGTGTGGCTGGGGAGGA+AGG | + | chr5.2:6125589-6125608 | MS.gene09669:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 6124776 | 6126529 | 6124776 | ID=MS.gene09669 |
| chr5.2 | mRNA | 6124776 | 6126529 | 6124776 | ID=MS.gene09669.t1;Parent=MS.gene09669 |
| chr5.2 | exon | 6124776 | 6124988 | 6124776 | ID=MS.gene09669.t1.exon1;Parent=MS.gene09669.t1 |
| chr5.2 | CDS | 6124776 | 6124988 | 6124776 | ID=cds.MS.gene09669.t1;Parent=MS.gene09669.t1 |
| chr5.2 | exon | 6125145 | 6125336 | 6125145 | ID=MS.gene09669.t1.exon2;Parent=MS.gene09669.t1 |
| chr5.2 | CDS | 6125145 | 6125336 | 6125145 | ID=cds.MS.gene09669.t1;Parent=MS.gene09669.t1 |
| chr5.2 | exon | 6125572 | 6125737 | 6125572 | ID=MS.gene09669.t1.exon3;Parent=MS.gene09669.t1 |
| chr5.2 | CDS | 6125572 | 6125737 | 6125572 | ID=cds.MS.gene09669.t1;Parent=MS.gene09669.t1 |
| chr5.2 | exon | 6126102 | 6126529 | 6126102 | ID=MS.gene09669.t1.exon4;Parent=MS.gene09669.t1 |
| chr5.2 | CDS | 6126102 | 6126529 | 6126102 | ID=cds.MS.gene09669.t1;Parent=MS.gene09669.t1 |
| Gene Sequence |
| Protein sequence |
