Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20369.t1 | XP_003611203.1 | 96.8 | 497 | 15 | 1 | 35 | 531 | 1 | 496 | 3.90E-281 | 976.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20369.t1 | Q9LQ10 | 54.6 | 531 | 196 | 9 | 35 | 529 | 31 | 552 | 1.6e-155 | 550.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20369.t1 | G7KEV4 | 96.8 | 497 | 15 | 1 | 35 | 531 | 1 | 496 | 2.8e-281 | 976.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene20369 | 0.813426 | 2.58E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene20369 | 0.844956 | 5.48E-59 | -1.69E-46 |
| MS.gene050593 | MS.gene20369 | 0.821471 | 3.97E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene20369 | 0.810224 | 1.28E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene20369 | 0.826436 | 2.72E-54 | -1.69E-46 |
| MS.gene050950 | MS.gene20369 | 0.811378 | 7.21E-51 | -1.69E-46 |
| MS.gene051387 | MS.gene20369 | 0.8043 | 2.31E-49 | -1.69E-46 |
| MS.gene052421 | MS.gene20369 | 0.830309 | 3.16E-55 | -1.69E-46 |
| MS.gene052501 | MS.gene20369 | 0.805449 | 1.33E-49 | -1.69E-46 |
| MS.gene052505 | MS.gene20369 | 0.810819 | 9.53E-51 | -1.69E-46 |
| MS.gene053103 | MS.gene20369 | 0.806453 | 8.17E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene20369 | 0.805557 | 1.26E-49 | -1.69E-46 |
| MS.gene053579 | MS.gene20369 | 0.810607 | 1.06E-50 | -1.69E-46 |
| MS.gene053626 | MS.gene20369 | 0.800223 | 1.59E-48 | -1.69E-46 |
| MS.gene054408 | MS.gene20369 | 0.825575 | 4.35E-54 | -1.69E-46 |
| MS.gene05505 | MS.gene20369 | 0.809594 | 1.75E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene20369 | 0.804689 | 1.91E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene20369 | 0.838277 | 3.17E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene20369 | 0.832832 | 7.55E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene20369 | 0.803907 | 2.79E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene20369 | 0.807439 | 5.05E-50 | -1.69E-46 |
| MS.gene058544 | MS.gene20369 | 0.807737 | 4.37E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene20369 | 0.825973 | 3.50E-54 | -1.69E-46 |
| MS.gene061150 | MS.gene20369 | 0.804441 | 2.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20369.t1 | MTR_5g011400 | 96.781 | 497 | 15 | 1 | 35 | 531 | 1 | 496 | 0.0 | 998 |
| MS.gene20369.t1 | MTR_6g463260 | 52.490 | 522 | 241 | 4 | 13 | 529 | 8 | 527 | 0.0 | 562 |
| MS.gene20369.t1 | MTR_6g091760 | 43.521 | 409 | 223 | 3 | 119 | 523 | 26 | 430 | 9.55e-131 | 388 |
| MS.gene20369.t1 | MTR_8g101750 | 42.752 | 407 | 223 | 3 | 119 | 523 | 24 | 422 | 1.18e-127 | 380 |
| MS.gene20369.t1 | MTR_4g097540 | 41.687 | 415 | 232 | 3 | 119 | 523 | 16 | 430 | 2.32e-125 | 375 |
| MS.gene20369.t1 | MTR_3g103550 | 43.237 | 414 | 229 | 3 | 119 | 527 | 14 | 426 | 6.66e-124 | 372 |
| MS.gene20369.t1 | MTR_5g015020 | 41.546 | 414 | 233 | 4 | 119 | 523 | 16 | 429 | 5.48e-122 | 367 |
| MS.gene20369.t1 | MTR_8g098930 | 40.786 | 407 | 238 | 1 | 120 | 523 | 25 | 431 | 3.20e-120 | 362 |
| MS.gene20369.t1 | MTR_8g028600 | 39.506 | 405 | 245 | 0 | 119 | 523 | 23 | 427 | 3.09e-116 | 352 |
| MS.gene20369.t1 | MTR_8g101820 | 40.049 | 407 | 221 | 5 | 119 | 523 | 24 | 409 | 1.44e-112 | 341 |
| MS.gene20369.t1 | MTR_7g079080 | 39.655 | 406 | 244 | 1 | 119 | 523 | 23 | 428 | 3.92e-112 | 342 |
| MS.gene20369.t1 | MTR_7g079080 | 37.771 | 323 | 200 | 1 | 202 | 523 | 1 | 323 | 7.24e-85 | 268 |
| MS.gene20369.t1 | MTR_8g023140 | 21.557 | 334 | 237 | 10 | 213 | 523 | 180 | 511 | 1.70e-13 | 73.2 |
| MS.gene20369.t1 | MTR_5g033230 | 25.175 | 143 | 104 | 3 | 213 | 353 | 129 | 270 | 1.49e-11 | 67.0 |
| MS.gene20369.t1 | MTR_5g033230 | 22.319 | 345 | 218 | 14 | 213 | 521 | 129 | 459 | 1.70e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20369.t1 | AT1G62960 | 55.451 | 532 | 190 | 10 | 35 | 529 | 31 | 552 | 0.0 | 577 |
| MS.gene20369.t1 | AT5G51690 | 52.104 | 499 | 228 | 5 | 35 | 529 | 1 | 492 | 0.0 | 553 |
| MS.gene20369.t1 | AT5G51690 | 53.911 | 358 | 162 | 1 | 175 | 529 | 12 | 369 | 8.41e-148 | 429 |
| MS.gene20369.t1 | AT4G37770 | 44.844 | 417 | 226 | 1 | 119 | 531 | 16 | 432 | 9.62e-132 | 392 |
| MS.gene20369.t1 | AT4G26200 | 43.133 | 415 | 233 | 2 | 112 | 523 | 23 | 437 | 3.96e-125 | 374 |
| MS.gene20369.t1 | AT3G49700 | 43.510 | 416 | 231 | 1 | 119 | 530 | 16 | 431 | 2.61e-122 | 367 |
| MS.gene20369.t1 | AT5G65800 | 42.788 | 416 | 234 | 2 | 119 | 530 | 16 | 431 | 1.77e-120 | 363 |
| MS.gene20369.t1 | AT2G22810 | 42.054 | 409 | 232 | 3 | 120 | 523 | 17 | 425 | 1.89e-119 | 360 |
| MS.gene20369.t1 | AT4G11280 | 40.244 | 410 | 243 | 2 | 119 | 527 | 27 | 435 | 4.26e-118 | 357 |
| MS.gene20369.t1 | AT4G08040 | 40.686 | 408 | 237 | 3 | 119 | 523 | 14 | 419 | 3.42e-116 | 351 |
| MS.gene20369.t1 | AT3G61510 | 41.422 | 408 | 229 | 4 | 120 | 523 | 24 | 425 | 2.60e-114 | 347 |
| MS.gene20369.t1 | AT1G01480 | 37.264 | 424 | 256 | 3 | 110 | 523 | 9 | 432 | 5.56e-110 | 337 |
| MS.gene20369.t1 | AT1G01480 | 38.050 | 318 | 193 | 2 | 210 | 523 | 9 | 326 | 3.33e-87 | 274 |
| MS.gene20369.t1 | AT1G72330 | 20.659 | 334 | 240 | 10 | 213 | 523 | 196 | 527 | 1.96e-16 | 82.8 |
| MS.gene20369.t1 | AT1G72330 | 20.173 | 347 | 239 | 10 | 213 | 523 | 196 | 540 | 4.49e-15 | 78.6 |
| MS.gene20369.t1 | AT1G17290 | 20.120 | 333 | 243 | 10 | 213 | 523 | 199 | 530 | 1.18e-14 | 77.0 |
| MS.gene20369.t1 | AT1G23310 | 25.175 | 143 | 104 | 3 | 213 | 353 | 129 | 270 | 3.28e-12 | 68.9 |
| MS.gene20369.t1 | AT1G23310 | 25.175 | 143 | 104 | 3 | 213 | 353 | 129 | 270 | 3.89e-12 | 68.9 |
| MS.gene20369.t1 | AT1G72330 | 20.952 | 210 | 158 | 5 | 213 | 415 | 196 | 404 | 1.53e-11 | 67.0 |
| MS.gene20369.t1 | AT5G36160 | 25.000 | 184 | 124 | 4 | 198 | 381 | 93 | 262 | 9.66e-11 | 64.3 |
Find 124 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCGCATCCGTTCATATTT+CGG | 0.176135 | 5.1:+4846389 | MS.gene20369:CDS |
| AATAATAACTCACGGTGTTT+TGG | 0.197413 | 5.1:-4846530 | None:intergenic |
| ATAATCTCTAATGAAATATT+TGG | 0.209776 | 5.1:+4848335 | MS.gene20369:CDS |
| ACCGCATCCGTTCATATTTC+GGG | 0.225078 | 5.1:+4846390 | MS.gene20369:CDS |
| CTGAGTTCGCTGTTGTGTTT+TGG | 0.226674 | 5.1:-4845984 | None:intergenic |
| AGGAGAGTCAGTTGCGATTA+TGG | 0.261623 | 5.1:-4846424 | None:intergenic |
| GCAAAAGCCACCACTGCTTC+TGG | 0.296696 | 5.1:-4848699 | None:intergenic |
| TGGTTTCATGTCTCAAGTTT+TGG | 0.325778 | 5.1:+4847856 | MS.gene20369:CDS |
| CAAGGAGTTGTCCAAGGAAC+AGG | 0.345132 | 5.1:+4846207 | MS.gene20369:CDS |
| CTAACTAACTCTTTATCAAT+TGG | 0.350981 | 5.1:-4846013 | None:intergenic |
| TGCTACTTACCATGGATTCA+TGG | 0.356282 | 5.1:+4846866 | MS.gene20369:CDS |
| AGAAACACTACTTGATCTTC+TGG | 0.360922 | 5.1:+4848286 | MS.gene20369:CDS |
| AGTTCATATAGTGTTTGATT+TGG | 0.363982 | 5.1:+4848433 | MS.gene20369:CDS |
| TGTGAAGGGTTGAAGAAAAC+TGG | 0.369060 | 5.1:-4847884 | None:intergenic |
| AGCTTCTGCCTAGCAGATAA+TGG | 0.376523 | 5.1:+4847950 | MS.gene20369:CDS |
| AGGATTATGAATCCGATGAT+AGG | 0.384138 | 5.1:-4846481 | None:intergenic |
| ATCCACAACATTCTCATTAT+AGG | 0.385218 | 5.1:-4848501 | None:intergenic |
| GTTCCCACGCCTCATAGTCC+TGG | 0.388688 | 5.1:+4847986 | MS.gene20369:CDS |
| TCTTCGCTTGGTTGAAAGCT+TGG | 0.391216 | 5.1:-4848193 | None:intergenic |
| GCTTTGATGAGGCCGTAAAA+TGG | 0.391674 | 5.1:+4848096 | MS.gene20369:intron |
| TTTCTTCAACCCTTCACATA+TGG | 0.391679 | 5.1:+4847889 | MS.gene20369:CDS |
| AATGGAAGCGCTGCTATACT+AGG | 0.401042 | 5.1:+4846804 | MS.gene20369:CDS |
| GGTTGTTGGAAGGAGGAGAT+TGG | 0.401069 | 5.1:-4846305 | None:intergenic |
| CCTGATGGTGTTATTCAACT+TGG | 0.405803 | 5.1:+4846501 | MS.gene20369:CDS |
| TTTGACTACGTTTCTTCGCT+TGG | 0.407338 | 5.1:-4848205 | None:intergenic |
| GAGGCCGTAAAATGGCGATC+TGG | 0.407730 | 5.1:+4848104 | MS.gene20369:CDS |
| GTAATAAGCAATTGCTGAGT+TGG | 0.421065 | 5.1:-4848563 | None:intergenic |
| TTCCAACAACCTTCCGCCTC+CGG | 0.421274 | 5.1:+4846317 | MS.gene20369:CDS |
| CTCCGGAGGCGGAAGGTTGT+TGG | 0.429612 | 5.1:-4846319 | None:intergenic |
| GTGGAAGGATTAGAGCAGTT+GGG | 0.430008 | 5.1:+4848665 | MS.gene20369:CDS |
| ATTCGTTCCTATAGTGAAAA+GGG | 0.430876 | 5.1:+4848746 | MS.gene20369:CDS |
| TTGTTTAAACCAACGTGATA+AGG | 0.431260 | 5.1:-4846444 | None:intergenic |
| CATTCGTTCCTATAGTGAAA+AGG | 0.435473 | 5.1:+4848745 | MS.gene20369:CDS |
| CGATTTAATAATTTGCCAGC+AGG | 0.436573 | 5.1:-4848263 | None:intergenic |
| AGGCCGTAAAATGGCGATCT+GGG | 0.452160 | 5.1:+4848105 | MS.gene20369:CDS |
| AAACCTTGTATCTGAAATCA+TGG | 0.453144 | 5.1:-4848585 | None:intergenic |
| GAGAGAGAGCGTGACAAGGC+GGG | 0.454319 | 5.1:-4846348 | None:intergenic |
| ATCCGTTCATATTTCGGGTC+GGG | 0.455221 | 5.1:+4846395 | MS.gene20369:CDS |
| CCTGTAGTAATGGAACGAAT+CGG | 0.459030 | 5.1:+4848896 | MS.gene20369:CDS |
| GGTGTTGAGATAGGAATAGA+AGG | 0.460500 | 5.1:-4845962 | None:intergenic |
| CTGAGGCAACCACAATTTGA+TGG | 0.468751 | 5.1:-4846831 | None:intergenic |
| CTGTAGTAATGGAACGAATC+GGG | 0.469670 | 5.1:+4848897 | MS.gene20369:CDS |
| AGAGAGAGCGTGACAAGGCG+GGG | 0.470507 | 5.1:-4846347 | None:intergenic |
| GCAGAAGCTTAGAATTTCAA+TGG | 0.475169 | 5.1:-4847936 | None:intergenic |
| CGAATCATACAGGTTGTGGC+TGG | 0.480143 | 5.1:+4847836 | MS.gene20369:intron |
| CCGATTCGTTCCATTACTAC+AGG | 0.480415 | 5.1:-4848896 | None:intergenic |
| TGTGAGCATGGCAGAAATCA+TGG | 0.480730 | 5.1:+4848385 | MS.gene20369:CDS |
| GTGTGGATTTGATTGAAGAA+TGG | 0.481552 | 5.1:+4846772 | MS.gene20369:CDS |
| GTCACGCTCTCTCTCAGCTC+GGG | 0.483427 | 5.1:+4846356 | MS.gene20369:CDS |
| AAGCTTAGAATTTCAATGGC+AGG | 0.484745 | 5.1:-4847932 | None:intergenic |
| GAGAGAGCGTGACAAGGCGG+GGG | 0.484996 | 5.1:-4846346 | None:intergenic |
| CCAAGTTGAATAACACCATC+AGG | 0.486490 | 5.1:-4846501 | None:intergenic |
| TCACATATGGTGCTAACTGC+AGG | 0.490346 | 5.1:+4847902 | MS.gene20369:CDS |
| ATCTCTAATGAAATATTTGG+AGG | 0.499661 | 5.1:+4848338 | MS.gene20369:CDS |
| AAATGATATTCCTGTAGTAA+TGG | 0.500041 | 5.1:+4848886 | MS.gene20369:CDS |
| TGTCACGCTCTCTCTCAGCT+CGG | 0.501102 | 5.1:+4846355 | MS.gene20369:CDS |
| TGTGGAAGGATTAGAGCAGT+TGG | 0.502576 | 5.1:+4848664 | MS.gene20369:CDS |
| AATTTGCCAGCAGGGTTCGA+AGG | 0.512224 | 5.1:-4848254 | None:intergenic |
| AGAGAGCGTGACAAGGCGGG+GGG | 0.512472 | 5.1:-4846345 | None:intergenic |
| ATGTATAATGCATTTGTGGA+AGG | 0.513384 | 5.1:+4848650 | MS.gene20369:CDS |
| GACTATGAGGCGTGGGAACA+AGG | 0.514495 | 5.1:-4847982 | None:intergenic |
| ATGCATTTCCATTATCTGCT+AGG | 0.514780 | 5.1:-4847958 | None:intergenic |
| AGCTTAGAATTTCAATGGCA+GGG | 0.517674 | 5.1:-4847931 | None:intergenic |
| AGCTAAGATCAATGTTACTC+CGG | 0.521490 | 5.1:+4848802 | MS.gene20369:CDS |
| TTGTTTGTTGTAGCTATGTG+TGG | 0.521963 | 5.1:+4846755 | MS.gene20369:intron |
| TCAAACCCTTCGAACCCTGC+TGG | 0.524906 | 5.1:+4848248 | MS.gene20369:CDS |
| TCTCTCTCAGCTCGGGTCAG+AGG | 0.530882 | 5.1:+4846363 | MS.gene20369:CDS |
| GGATTATGAATCCGATGATA+GGG | 0.531594 | 5.1:-4846480 | None:intergenic |
| TTACCATGATTTCAGATACA+AGG | 0.534016 | 5.1:+4848582 | MS.gene20369:CDS |
| TGTTGGAAGGAGGAGATTGG+CGG | 0.536046 | 5.1:-4846302 | None:intergenic |
| TTCCCACGCCTCATAGTCCT+GGG | 0.537875 | 5.1:+4847987 | MS.gene20369:CDS |
| CTTTGAAGTCCATGAATCCA+TGG | 0.548428 | 5.1:-4846875 | None:intergenic |
| CATCCGTTCATATTTCGGGT+CGG | 0.550467 | 5.1:+4846394 | MS.gene20369:CDS |
| CATCGGATTCATAATCCTGA+TGG | 0.552817 | 5.1:+4846486 | MS.gene20369:CDS |
| GCTAAGATCAATGTTACTCC+GGG | 0.552971 | 5.1:+4848803 | MS.gene20369:CDS |
| GACAGTTACCCAGGACTATG+AGG | 0.555781 | 5.1:-4847995 | None:intergenic |
| ACTGACCTTGCTACTTACCA+TGG | 0.557547 | 5.1:+4846858 | MS.gene20369:CDS |
| TGGAAGCGGAAGATCATGAT+CGG | 0.557918 | 5.1:+4848405 | MS.gene20369:CDS |
| AAACGAAGAGTTTGTGAGCA+TGG | 0.560825 | 5.1:+4848373 | MS.gene20369:CDS |
| ATAACTCCTACATTAAAACT+TGG | 0.562403 | 5.1:-4848473 | None:intergenic |
| CGTAAAATGGCGATCTGGGG+TGG | 0.563080 | 5.1:+4848109 | MS.gene20369:CDS |
| GGAAGCGGAAGATCATGATC+GGG | 0.568398 | 5.1:+4848406 | MS.gene20369:CDS |
| AGCTGAGAGAGAGCGTGACA+AGG | 0.569266 | 5.1:-4846352 | None:intergenic |
| GAGAGCGTGACAAGGCGGGG+GGG | 0.571475 | 5.1:-4846344 | None:intergenic |
| AAAATTATAGTGCCTTTGCA+AGG | 0.571998 | 5.1:+4846189 | MS.gene20369:CDS |
| CTCCTATAATGAGAATGTTG+TGG | 0.573694 | 5.1:+4848499 | MS.gene20369:CDS |
| CATGGCAGAAATCATGGAAG+CGG | 0.576068 | 5.1:+4848391 | MS.gene20369:CDS |
| GGCGGAAGGTTGTTGGAAGG+AGG | 0.578316 | 5.1:-4846312 | None:intergenic |
| ATTTGCCAGCAGGGTTCGAA+GGG | 0.580365 | 5.1:-4848253 | None:intergenic |
| GCAGTTAGCACCATATGTGA+AGG | 0.584986 | 5.1:-4847899 | None:intergenic |
| TTCGTTCCTATAGTGAAAAG+GGG | 0.594801 | 5.1:+4848747 | MS.gene20369:CDS |
| GATTTAATAATTTGCCAGCA+GGG | 0.595062 | 5.1:-4848262 | None:intergenic |
| AGAAAGTAGAAAAGAGCGCA+AGG | 0.597657 | 5.1:-4846255 | None:intergenic |
| ATGGAAGCGCTGCTATACTA+GGG | 0.597721 | 5.1:+4846805 | MS.gene20369:CDS |
| GTCACTGTATTGAACCAGGA+TGG | 0.598491 | 5.1:+4848834 | MS.gene20369:CDS |
| CCTTGGACAACTCCTTGCAA+AGG | 0.600708 | 5.1:-4846201 | None:intergenic |
| CAAAACACAACAGCGAACTC+AGG | 0.600849 | 5.1:+4845985 | MS.gene20369:CDS |
| GAGTGCACCAGAAGCAGTGG+TGG | 0.601656 | 5.1:+4848692 | MS.gene20369:CDS |
| AAGGAGTTGTCCAAGGAACA+GGG | 0.604578 | 5.1:+4846208 | MS.gene20369:CDS |
| TCATAAAGACTAACAAGTTG+AGG | 0.605108 | 5.1:+4848618 | MS.gene20369:CDS |
| ACCCGAAATATGAACGGATG+CGG | 0.606050 | 5.1:-4846391 | None:intergenic |
| ATTGAGTGCACCAGAAGCAG+TGG | 0.606848 | 5.1:+4848689 | MS.gene20369:CDS |
| CCTTTGCAAGGAGTTGTCCA+AGG | 0.609185 | 5.1:+4846201 | MS.gene20369:CDS |
| TCGCAGATAATCCCTATCAT+CGG | 0.610937 | 5.1:+4846469 | MS.gene20369:CDS |
| TGAGAGAGAGCGTGACAAGG+CGG | 0.612272 | 5.1:-4846349 | None:intergenic |
| ATACAGTGACAAGAGGATCC+CGG | 0.612424 | 5.1:-4848821 | None:intergenic |
| TACCCAGGACTATGAGGCGT+GGG | 0.614255 | 5.1:-4847989 | None:intergenic |
| TCTTGTCACTGTATTGAACC+AGG | 0.618687 | 5.1:+4848830 | MS.gene20369:CDS |
| TGAATCCATGGTAAGTAGCA+AGG | 0.622432 | 5.1:-4846863 | None:intergenic |
| CAGTTAGCACCATATGTGAA+GGG | 0.623911 | 5.1:-4847898 | None:intergenic |
| ACTGACTCTCCTTATCACGT+TGG | 0.628337 | 5.1:+4846435 | MS.gene20369:CDS |
| GGAGGCGGAAGGTTGTTGGA+AGG | 0.630218 | 5.1:-4846315 | None:intergenic |
| CTAGGGACACCATCAAATTG+TGG | 0.630370 | 5.1:+4846822 | MS.gene20369:CDS |
| GACCCGACCCGAAATATGAA+CGG | 0.635011 | 5.1:-4846397 | None:intergenic |
| TGGATTCATGGACTTCAAAG+TGG | 0.643980 | 5.1:+4846878 | MS.gene20369:CDS |
| CCTATGGTGCAGCTTTGATG+AGG | 0.645473 | 5.1:+4848085 | MS.gene20369:intron |
| TGGTTCAATACAGTGACAAG+AGG | 0.646697 | 5.1:-4848828 | None:intergenic |
| GGCCGTAAAATGGCGATCTG+GGG | 0.651142 | 5.1:+4848106 | MS.gene20369:CDS |
| GGAGTTGTCCAAGGAACAGG+GGG | 0.653313 | 5.1:+4846210 | MS.gene20369:CDS |
| TTACCCAGGACTATGAGGCG+TGG | 0.667929 | 5.1:-4847990 | None:intergenic |
| GAAGAATGGATTCGTCACAA+TGG | 0.675346 | 5.1:+4846786 | MS.gene20369:CDS |
| TAGCAAGGTCAGTGATACTG+AGG | 0.675550 | 5.1:-4846848 | None:intergenic |
| AGGAGTTGTCCAAGGAACAG+GGG | 0.684611 | 5.1:+4846209 | MS.gene20369:CDS |
| TCGTTCCTATAGTGAAAAGG+GGG | 0.686058 | 5.1:+4848748 | MS.gene20369:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAAAAACAAAAATTA+TGG | + | chr5.1:4847452-4847471 | MS.gene20369:intron | 10.0% |
| !! | TTTATAAAACTAAAATAACT+AGG | - | chr5.1:4847368-4847387 | None:intergenic | 10.0% |
| !! | ATAAAATGACATTGAAATAA+TGG | - | chr5.1:4847396-4847415 | None:intergenic | 15.0% |
| !! | ATAATCTCTAATGAAATATT+TGG | + | chr5.1:4848335-4848354 | MS.gene20369:CDS | 15.0% |
| !! | ATATATATTAGTGTTAAAGA+TGG | - | chr5.1:4847319-4847338 | None:intergenic | 15.0% |
| !! | TAAAATGACATTGAAATAAT+GGG | - | chr5.1:4847395-4847414 | None:intergenic | 15.0% |
| !!! | AATTGGTAATTTAGTTTTTT+AGG | - | chr5.1:4847294-4847313 | None:intergenic | 15.0% |
| !!! | CAAATATTAAACTGATTTTT+AGG | + | chr5.1:4847419-4847438 | MS.gene20369:intron | 15.0% |
| !!! | TGTTTTTATTTTGTTTAACA+TGG | - | chr5.1:4847445-4847464 | None:intergenic | 15.0% |
| !! | AAAAATGTATAATGCATTTG+TGG | + | chr5.1:4848646-4848665 | MS.gene20369:CDS | 20.0% |
| !! | TCAATGTAGTAAAACAAAAA+CGG | - | chr5.1:4848862-4848881 | None:intergenic | 20.0% |
| !! | TTAGATATTATCGATAAACA+AGG | - | chr5.1:4846044-4846063 | None:intergenic | 20.0% |
| !!! | AGATTGAATCAATTTTATCT+TGG | + | chr5.1:4846961-4846980 | MS.gene20369:intron | 20.0% |
| !!! | ATATTTTTTTAGTTGAGTCT+CGG | - | chr5.1:4846098-4846117 | None:intergenic | 20.0% |
| !!! | TAATGATAGTTTTAAACCTA+TGG | + | chr5.1:4848069-4848088 | MS.gene20369:intron | 20.0% |
| !!! | TTTTATGCATACTATTACTA+AGG | + | chr5.1:4847629-4847648 | MS.gene20369:intron | 20.0% |
| ! | AAATGATATTCCTGTAGTAA+TGG | + | chr5.1:4848886-4848905 | MS.gene20369:CDS | 25.0% |
| ! | AGAAAAGGAATAATAACTCA+CGG | - | chr5.1:4846541-4846560 | None:intergenic | 25.0% |
| ! | AGTTCATATAGTGTTTGATT+TGG | + | chr5.1:4848433-4848452 | MS.gene20369:CDS | 25.0% |
| ! | ATAACTCCTACATTAAAACT+TGG | - | chr5.1:4848476-4848495 | None:intergenic | 25.0% |
| ! | ATCTCTAATGAAATATTTGG+AGG | + | chr5.1:4848338-4848357 | MS.gene20369:CDS | 25.0% |
| ! | CTAACTAACTCTTTATCAAT+TGG | - | chr5.1:4846016-4846035 | None:intergenic | 25.0% |
| ! | GAGAATTAAGATAGAAACAA+AGG | - | chr5.1:4847817-4847836 | None:intergenic | 25.0% |
| ! | TAGTGTTAAAGATGGTAAAT+TGG | - | chr5.1:4847311-4847330 | None:intergenic | 25.0% |
| !! | AGATAACTAAACAAGGATTT+TGG | - | chr5.1:4848033-4848052 | None:intergenic | 25.0% |
| !! | TATGTAGCATTTTAGATTGA+AGG | + | chr5.1:4847040-4847059 | MS.gene20369:intron | 25.0% |
| !!! | TATGTTCCAAGTTTTAATGT+AGG | + | chr5.1:4848467-4848486 | MS.gene20369:CDS | 25.0% |
| AAAATTATAGTGCCTTTGCA+AGG | + | chr5.1:4846189-4846208 | MS.gene20369:CDS | 30.0% | |
| ATATTGGATCAAATAGTCCA+TGG | - | chr5.1:4847497-4847516 | None:intergenic | 30.0% | |
| ATCCACAACATTCTCATTAT+AGG | - | chr5.1:4848504-4848523 | None:intergenic | 30.0% | |
| ATGTATAATGCATTTGTGGA+AGG | + | chr5.1:4848650-4848669 | MS.gene20369:CDS | 30.0% | |
| ATTCGTTCCTATAGTGAAAA+GGG | + | chr5.1:4848746-4848765 | MS.gene20369:CDS | 30.0% | |
| GAAGAGTAGATAACTAAACA+AGG | - | chr5.1:4848040-4848059 | None:intergenic | 30.0% | |
| TCATAAAGACTAACAAGTTG+AGG | + | chr5.1:4848618-4848637 | MS.gene20369:CDS | 30.0% | |
| TCTTAATTCTCGAATCATAC+AGG | + | chr5.1:4847826-4847845 | MS.gene20369:intron | 30.0% | |
| TTAAATTACCATTAGTGTCG+AGG | + | chr5.1:4846640-4846659 | MS.gene20369:intron | 30.0% | |
| TTACCATGATTTCAGATACA+AGG | + | chr5.1:4848582-4848601 | MS.gene20369:CDS | 30.0% | |
| TTGTTTAAACCAACGTGATA+AGG | - | chr5.1:4846447-4846466 | None:intergenic | 30.0% | |
| ! | AAACCTTGTATCTGAAATCA+TGG | - | chr5.1:4848588-4848607 | None:intergenic | 30.0% |
| ! | AATAATAACTCACGGTGTTT+TGG | - | chr5.1:4846533-4846552 | None:intergenic | 30.0% |
| ! | AGTAACAAGTTGAATCAATC+AGG | - | chr5.1:4846939-4846958 | None:intergenic | 30.0% |
| ! | ATAATAACTCACGGTGTTTT+GGG | - | chr5.1:4846532-4846551 | None:intergenic | 30.0% |
| ! | GATTTAATAATTTGCCAGCA+GGG | - | chr5.1:4848265-4848284 | None:intergenic | 30.0% |
| ! | TCTAAAATGCTACATAGCTT+TGG | - | chr5.1:4847036-4847055 | None:intergenic | 30.0% |
| !! | AAGCTTTAAGATCCTCATAT+TGG | - | chr5.1:4847513-4847532 | None:intergenic | 30.0% |
| !!! | TGAGAATTGTGCCATTTTTT+TGG | - | chr5.1:4848531-4848550 | None:intergenic | 30.0% |
| AAACGTAGTCAAAAAGTTCG+TGG | + | chr5.1:4848215-4848234 | MS.gene20369:CDS | 35.0% | |
| AAACTCAAACTCAAGTGAGT+TGG | + | chr5.1:4846142-4846161 | MS.gene20369:intron | 35.0% | |
| AAGCTTAGAATTTCAATGGC+AGG | - | chr5.1:4847935-4847954 | None:intergenic | 35.0% | |
| AATTATGGTCCATGATCTGT+TGG | + | chr5.1:4847467-4847486 | MS.gene20369:intron | 35.0% | |
| AGAAACACTACTTGATCTTC+TGG | + | chr5.1:4848286-4848305 | MS.gene20369:CDS | 35.0% | |
| AGCTAAGATCAATGTTACTC+CGG | + | chr5.1:4848802-4848821 | MS.gene20369:CDS | 35.0% | |
| AGCTTAGAATTTCAATGGCA+GGG | - | chr5.1:4847934-4847953 | None:intergenic | 35.0% | |
| AGGATTATGAATCCGATGAT+AGG | - | chr5.1:4846484-4846503 | None:intergenic | 35.0% | |
| ATGCATTTCCATTATCTGCT+AGG | - | chr5.1:4847961-4847980 | None:intergenic | 35.0% | |
| CATTCGTTCCTATAGTGAAA+AGG | + | chr5.1:4848745-4848764 | MS.gene20369:CDS | 35.0% | |
| CTCCTATAATGAGAATGTTG+TGG | + | chr5.1:4848499-4848518 | MS.gene20369:CDS | 35.0% | |
| GAATCAATCAGGAAGAACAA+AGG | - | chr5.1:4846928-4846947 | None:intergenic | 35.0% | |
| GCAGAAGCTTAGAATTTCAA+TGG | - | chr5.1:4847939-4847958 | None:intergenic | 35.0% | |
| GGACTATTTGATCCAATATG+AGG | + | chr5.1:4847498-4847517 | MS.gene20369:intron | 35.0% | |
| GGATTATGAATCCGATGATA+GGG | - | chr5.1:4846483-4846502 | None:intergenic | 35.0% | |
| GTAATAAGCAATTGCTGAGT+TGG | - | chr5.1:4848566-4848585 | None:intergenic | 35.0% | |
| GTGTGGATTTGATTGAAGAA+TGG | + | chr5.1:4846772-4846791 | MS.gene20369:CDS | 35.0% | |
| GTTCGATGTTTGATATGTAG+CGG | + | chr5.1:4847162-4847181 | MS.gene20369:intron | 35.0% | |
| TATGAAATTGACAGTTACCC+AGG | - | chr5.1:4848007-4848026 | None:intergenic | 35.0% | |
| TTAGTTATCTACTCTTCTGC+AGG | + | chr5.1:4848043-4848062 | MS.gene20369:intron | 35.0% | |
| TTCGTTCCTATAGTGAAAAG+GGG | + | chr5.1:4848747-4848766 | MS.gene20369:CDS | 35.0% | |
| TTTCTTCAACCCTTCACATA+TGG | + | chr5.1:4847889-4847908 | MS.gene20369:CDS | 35.0% | |
| ! | ATTCCTTTTCTCTTCTCTGT+AGG | + | chr5.1:4846550-4846569 | MS.gene20369:intron | 35.0% |
| ! | CGATTTAATAATTTGCCAGC+AGG | - | chr5.1:4848266-4848285 | None:intergenic | 35.0% |
| ! | GTGTAGTCATCTCATTTTCT+AGG | + | chr5.1:4847674-4847693 | MS.gene20369:intron | 35.0% |
| ! | TAGTCATCTCATTTTCTAGG+AGG | + | chr5.1:4847677-4847696 | MS.gene20369:intron | 35.0% |
| ! | TGGTTTCATGTCTCAAGTTT+TGG | + | chr5.1:4847856-4847875 | MS.gene20369:CDS | 35.0% |
| !! | AGTCATCTCATTTTCTAGGA+GGG | + | chr5.1:4847678-4847697 | MS.gene20369:intron | 35.0% |
| !! | GTAGCGGACAATACATATAT+AGG | + | chr5.1:4847178-4847197 | MS.gene20369:intron | 35.0% |
| !! | TTGTTTGTTGTAGCTATGTG+TGG | + | chr5.1:4846755-4846774 | MS.gene20369:intron | 35.0% |
| !!! | GAATTGTGCCATTTTTTTGG+AGG | - | chr5.1:4848528-4848547 | None:intergenic | 35.0% |
| AAACAAAAACGGAACCATCC+TGG | - | chr5.1:4848851-4848870 | None:intergenic | 40.0% | |
| AAACGAAGAGTTTGTGAGCA+TGG | + | chr5.1:4848373-4848392 | MS.gene20369:CDS | 40.0% | |
| AACCGCATCCGTTCATATTT+CGG | + | chr5.1:4846389-4846408 | MS.gene20369:CDS | 40.0% | |
| AATGTGTGGTTGCACGAATA+TGG | + | chr5.1:4847562-4847581 | MS.gene20369:intron | 40.0% | |
| AGCAACTTCAAGTGAATGCA+AGG | - | chr5.1:4847771-4847790 | None:intergenic | 40.0% | |
| AGTCTCGGACTAATCAAAGT+TGG | - | chr5.1:4846083-4846102 | None:intergenic | 40.0% | |
| ATGCCTACAGAGAAGAGAAA+AGG | - | chr5.1:4846556-4846575 | None:intergenic | 40.0% | |
| ATTCATGGACTTCAAAGTGG+TGG | + | chr5.1:4846881-4846900 | MS.gene20369:intron | 40.0% | |
| CAGTTAGCACCATATGTGAA+GGG | - | chr5.1:4847901-4847920 | None:intergenic | 40.0% | |
| CATAAAACACTGACACACAC+TGG | - | chr5.1:4846687-4846706 | None:intergenic | 40.0% | |
| CATATGCCAGATAGATAGAG+AGG | - | chr5.1:4847739-4847758 | None:intergenic | 40.0% | |
| CATCGGATTCATAATCCTGA+TGG | + | chr5.1:4846486-4846505 | MS.gene20369:CDS | 40.0% | |
| CATCGTGGATTTATGAAGCA+CGG | - | chr5.1:4847219-4847238 | None:intergenic | 40.0% | |
| GATTTATGAAGCACGGACAT+TGG | - | chr5.1:4847212-4847231 | None:intergenic | 40.0% | |
| GCTAAGATCAATGTTACTCC+GGG | + | chr5.1:4848803-4848822 | MS.gene20369:CDS | 40.0% | |
| GTATTCTTCTCTCTTCATCG+TGG | - | chr5.1:4847234-4847253 | None:intergenic | 40.0% | |
| GTCTCGGACTAATCAAAGTT+GGG | - | chr5.1:4846082-4846101 | None:intergenic | 40.0% | |
| TACTAACACCTCGACACTAA+TGG | - | chr5.1:4846651-4846670 | None:intergenic | 40.0% | |
| TCGCAGATAATCCCTATCAT+CGG | + | chr5.1:4846469-4846488 | MS.gene20369:CDS | 40.0% | |
| TCGTTCCTATAGTGAAAAGG+GGG | + | chr5.1:4848748-4848767 | MS.gene20369:CDS | 40.0% | |
| TCTTGTCACTGTATTGAACC+AGG | + | chr5.1:4848830-4848849 | MS.gene20369:CDS | 40.0% | |
| TGAATCCATGGTAAGTAGCA+AGG | - | chr5.1:4846866-4846885 | None:intergenic | 40.0% | |
| TGGATTCATGGACTTCAAAG+TGG | + | chr5.1:4846878-4846897 | MS.gene20369:CDS | 40.0% | |
| TGGTTCAATACAGTGACAAG+AGG | - | chr5.1:4848831-4848850 | None:intergenic | 40.0% | |
| TGTGAAGGGTTGAAGAAAAC+TGG | - | chr5.1:4847887-4847906 | None:intergenic | 40.0% | |
| TGTGGATGCCTCCAAAAAAA+TGG | + | chr5.1:4848517-4848536 | MS.gene20369:CDS | 40.0% | |
| TTCATGGACTTCAAAGTGGT+GGG | + | chr5.1:4846882-4846901 | MS.gene20369:intron | 40.0% | |
| TTCTCGAATCATACAGGTTG+TGG | + | chr5.1:4847832-4847851 | MS.gene20369:intron | 40.0% | |
| TTTGACTACGTTTCTTCGCT+TGG | - | chr5.1:4848208-4848227 | None:intergenic | 40.0% | |
| ! | AAACTCAAGTGAGTTGGCAA+TGG | + | chr5.1:4846148-4846167 | MS.gene20369:intron | 40.0% |
| ! | AGAAAGTAGAAAAGAGCGCA+AGG | - | chr5.1:4846258-4846277 | None:intergenic | 40.0% |
| ! | CAGTGTGTGTCAGTGTTTTA+TGG | + | chr5.1:4846685-4846704 | MS.gene20369:intron | 40.0% |
| ! | CCAAGTTGAATAACACCATC+AGG | - | chr5.1:4846504-4846523 | None:intergenic | 40.0% |
| ! | CCTGTAGTAATGGAACGAAT+CGG | + | chr5.1:4848896-4848915 | MS.gene20369:CDS | 40.0% |
| ! | CTGTAGTAATGGAACGAATC+GGG | + | chr5.1:4848897-4848916 | MS.gene20369:CDS | 40.0% |
| ! | GAAGAACAAAGGCACAAGAT+AGG | - | chr5.1:4846917-4846936 | None:intergenic | 40.0% |
| ! | GAAGAATGGATTCGTCACAA+TGG | + | chr5.1:4846786-4846805 | MS.gene20369:CDS | 40.0% |
| ! | GGTGTTGAGATAGGAATAGA+AGG | - | chr5.1:4845965-4845984 | None:intergenic | 40.0% |
| ! | TGAGTTCGCTGTTGTGTTTT+GGG | - | chr5.1:4845986-4846005 | None:intergenic | 40.0% |
| ! | TGAGTTGGCAATGGTTTAGT+GGG | + | chr5.1:4846157-4846176 | MS.gene20369:intron | 40.0% |
| ! | TGCTACTTACCATGGATTCA+TGG | + | chr5.1:4846866-4846885 | MS.gene20369:CDS | 40.0% |
| !! | CCTGATGGTGTTATTCAACT+TGG | + | chr5.1:4846501-4846520 | MS.gene20369:CDS | 40.0% |
| !! | CTTTGAAGTCCATGAATCCA+TGG | - | chr5.1:4846878-4846897 | None:intergenic | 40.0% |
| !!! | TGTGTTTTGGGTGTTGAGAT+AGG | - | chr5.1:4845974-4845993 | None:intergenic | 40.0% |
| AAAAAAGTCCCCCTGTTCCT+TGG | - | chr5.1:4846221-4846240 | None:intergenic | 45.0% | |
| AAGGAGTTGTCCAAGGAACA+GGG | + | chr5.1:4846208-4846227 | MS.gene20369:CDS | 45.0% | |
| ACCCGAAATATGAACGGATG+CGG | - | chr5.1:4846394-4846413 | None:intergenic | 45.0% | |
| ACCGCATCCGTTCATATTTC+GGG | + | chr5.1:4846390-4846409 | MS.gene20369:CDS | 45.0% | |
| AGCTTCTGCCTAGCAGATAA+TGG | + | chr5.1:4847950-4847969 | MS.gene20369:CDS | 45.0% | |
| AGGAGAGTCAGTTGCGATTA+TGG | - | chr5.1:4846427-4846446 | None:intergenic | 45.0% | |
| ATACAGTGACAAGAGGATCC+CGG | - | chr5.1:4848824-4848843 | None:intergenic | 45.0% | |
| CAAAACACAACAGCGAACTC+AGG | + | chr5.1:4845985-4846004 | MS.gene20369:CDS | 45.0% | |
| CATGATCTGTTGGAAGACCA+TGG | + | chr5.1:4847477-4847496 | MS.gene20369:intron | 45.0% | |
| CATGGCAGAAATCATGGAAG+CGG | + | chr5.1:4848391-4848410 | MS.gene20369:CDS | 45.0% | |
| CATGGTCTTCCAACAGATCA+TGG | - | chr5.1:4847479-4847498 | None:intergenic | 45.0% | |
| CTAGGGACACCATCAAATTG+TGG | + | chr5.1:4846822-4846841 | MS.gene20369:CDS | 45.0% | |
| CTATAGTGAAAAGGGGGAAC+TGG | + | chr5.1:4848754-4848773 | MS.gene20369:CDS | 45.0% | |
| CTGAGGCAACCACAATTTGA+TGG | - | chr5.1:4846834-4846853 | None:intergenic | 45.0% | |
| GCAGTTAGCACCATATGTGA+AGG | - | chr5.1:4847902-4847921 | None:intergenic | 45.0% | |
| GCTTTGATGAGGCCGTAAAA+TGG | + | chr5.1:4848096-4848115 | MS.gene20369:intron | 45.0% | |
| GTCACTGTATTGAACCAGGA+TGG | + | chr5.1:4848834-4848853 | MS.gene20369:CDS | 45.0% | |
| GTGGAAGGATTAGAGCAGTT+GGG | + | chr5.1:4848665-4848684 | MS.gene20369:CDS | 45.0% | |
| TAGCAAGGTCAGTGATACTG+AGG | - | chr5.1:4846851-4846870 | None:intergenic | 45.0% | |
| TCTTCGCTTGGTTGAAAGCT+TGG | - | chr5.1:4848196-4848215 | None:intergenic | 45.0% | |
| TGGAAGCGGAAGATCATGAT+CGG | + | chr5.1:4848405-4848424 | MS.gene20369:CDS | 45.0% | |
| TGTGAGCATGGCAGAAATCA+TGG | + | chr5.1:4848385-4848404 | MS.gene20369:CDS | 45.0% | |
| TGTGGAAGGATTAGAGCAGT+TGG | + | chr5.1:4848664-4848683 | MS.gene20369:CDS | 45.0% | |
| ! | ACTGACCTTGCTACTTACCA+TGG | + | chr5.1:4846858-4846877 | MS.gene20369:CDS | 45.0% |
| ! | ACTGACTCTCCTTATCACGT+TGG | + | chr5.1:4846435-4846454 | MS.gene20369:CDS | 45.0% |
| ! | ATCCGTTCATATTTCGGGTC+GGG | + | chr5.1:4846395-4846414 | MS.gene20369:CDS | 45.0% |
| ! | CAGTTCCCCCTTTTCACTAT+AGG | - | chr5.1:4848756-4848775 | None:intergenic | 45.0% |
| ! | CATCCGTTCATATTTCGGGT+CGG | + | chr5.1:4846394-4846413 | MS.gene20369:CDS | 45.0% |
| ! | CCGATTCGTTCCATTACTAC+AGG | - | chr5.1:4848899-4848918 | None:intergenic | 45.0% |
| ! | CGAGGTGTTAGTATCGTGTT+TGG | + | chr5.1:4846658-4846677 | MS.gene20369:intron | 45.0% |
| ! | CTGAGTTCGCTGTTGTGTTT+TGG | - | chr5.1:4845987-4846006 | None:intergenic | 45.0% |
| ! | GTGAGTTGGCAATGGTTTAG+TGG | + | chr5.1:4846156-4846175 | MS.gene20369:intron | 45.0% |
| ! | TCACATATGGTGCTAACTGC+AGG | + | chr5.1:4847902-4847921 | MS.gene20369:CDS | 45.0% |
| !! | AATGGAAGCGCTGCTATACT+AGG | + | chr5.1:4846804-4846823 | MS.gene20369:CDS | 45.0% |
| !! | AGCTTGCTAGATAGATGTCG+CGG | + | chr5.1:4847528-4847547 | MS.gene20369:intron | 45.0% |
| !! | ATGGAAGCGCTGCTATACTA+GGG | + | chr5.1:4846805-4846824 | MS.gene20369:CDS | 45.0% |
| !!! | AAGGAACAGGGGGACTTTTT+TGG | + | chr5.1:4846220-4846239 | MS.gene20369:CDS | 45.0% |
| !!! | AGGAACAGGGGGACTTTTTT+GGG | + | chr5.1:4846221-4846240 | MS.gene20369:CDS | 45.0% |
| !!! | AATTTTATTTATATATAGAT+GGG | + | chr5.1:4847710-4847729 | MS.gene20369:intron | 5.0% |
| !!! | TAATTTTATTTATATATAGA+TGG | + | chr5.1:4847709-4847728 | MS.gene20369:intron | 5.0% |
| AATTTGCCAGCAGGGTTCGA+AGG | - | chr5.1:4848257-4848276 | None:intergenic | 50.0% | |
| AGGAGTTGTCCAAGGAACAG+GGG | + | chr5.1:4846209-4846228 | MS.gene20369:CDS | 50.0% | |
| AGGCCGTAAAATGGCGATCT+GGG | + | chr5.1:4848105-4848124 | MS.gene20369:CDS | 50.0% | |
| ATTGAGTGCACCAGAAGCAG+TGG | + | chr5.1:4848689-4848708 | MS.gene20369:CDS | 50.0% | |
| ATTTGCCAGCAGGGTTCGAA+GGG | - | chr5.1:4848256-4848275 | None:intergenic | 50.0% | |
| CAAGGAGTTGTCCAAGGAAC+AGG | + | chr5.1:4846207-4846226 | MS.gene20369:CDS | 50.0% | |
| CCTCATCAAAGCTGCACCAT+AGG | - | chr5.1:4848088-4848107 | None:intergenic | 50.0% | |
| CCTTGGACAACTCCTTGCAA+AGG | - | chr5.1:4846204-4846223 | None:intergenic | 50.0% | |
| CCTTTGCAAGGAGTTGTCCA+AGG | + | chr5.1:4846201-4846220 | MS.gene20369:CDS | 50.0% | |
| CGAATCATACAGGTTGTGGC+TGG | + | chr5.1:4847836-4847855 | MS.gene20369:intron | 50.0% | |
| CGGTCGTAGACTGTAATGTG+TGG | + | chr5.1:4847548-4847567 | MS.gene20369:intron | 50.0% | |
| CTCAGACACATGTCGAACAC+CGG | - | chr5.1:4846582-4846601 | None:intergenic | 50.0% | |
| GACAGTTACCCAGGACTATG+AGG | - | chr5.1:4847998-4848017 | None:intergenic | 50.0% | |
| GACCCGACCCGAAATATGAA+CGG | - | chr5.1:4846400-4846419 | None:intergenic | 50.0% | |
| GGAAGCGGAAGATCATGATC+GGG | + | chr5.1:4848406-4848425 | MS.gene20369:CDS | 50.0% | |
| GGGTGTCCTCTCTATCTATC+TGG | + | chr5.1:4847730-4847749 | MS.gene20369:intron | 50.0% | |
| GGTTGTTGGAAGGAGGAGAT+TGG | - | chr5.1:4846308-4846327 | None:intergenic | 50.0% | |
| TCAGACACATGTCGAACACC+GGG | - | chr5.1:4846581-4846600 | None:intergenic | 50.0% | |
| TCTTCTCTGTAGGCATGTCC+CGG | + | chr5.1:4846560-4846579 | MS.gene20369:intron | 50.0% | |
| TGTTGGAAGGAGGAGATTGG+CGG | - | chr5.1:4846305-4846324 | None:intergenic | 50.0% | |
| ! | CCTATGGTGCAGCTTTGATG+AGG | + | chr5.1:4848085-4848104 | MS.gene20369:intron | 50.0% |
| !! | CACCCCAGATCGCCATTTTA+CGG | - | chr5.1:4848111-4848130 | None:intergenic | 50.0% |
| !!! | GGAACAGGGGGACTTTTTTG+GGG | + | chr5.1:4846222-4846241 | MS.gene20369:CDS | 50.0% |
| AAAAGGGGGAACTGGAGCTC+TGG | + | chr5.1:4848762-4848781 | MS.gene20369:CDS | 55.0% | |
| AAAGGGGGAACTGGAGCTCT+GGG | + | chr5.1:4848763-4848782 | MS.gene20369:CDS | 55.0% | |
| CGTAAAATGGCGATCTGGGG+TGG | + | chr5.1:4848109-4848128 | MS.gene20369:CDS | 55.0% | |
| GACTATGAGGCGTGGGAACA+AGG | - | chr5.1:4847985-4848004 | None:intergenic | 55.0% | |
| GAGGCCGTAAAATGGCGATC+TGG | + | chr5.1:4848104-4848123 | MS.gene20369:CDS | 55.0% | |
| GCAAAAGCCACCACTGCTTC+TGG | - | chr5.1:4848702-4848721 | None:intergenic | 55.0% | |
| GGAGTTGTCCAAGGAACAGG+GGG | + | chr5.1:4846210-4846229 | MS.gene20369:CDS | 55.0% | |
| GGCCGTAAAATGGCGATCTG+GGG | + | chr5.1:4848106-4848125 | MS.gene20369:CDS | 55.0% | |
| TACCCAGGACTATGAGGCGT+GGG | - | chr5.1:4847992-4848011 | None:intergenic | 55.0% | |
| TCAAACCCTTCGAACCCTGC+TGG | + | chr5.1:4848248-4848267 | MS.gene20369:CDS | 55.0% | |
| TGTCACGCTCTCTCTCAGCT+CGG | + | chr5.1:4846355-4846374 | MS.gene20369:CDS | 55.0% | |
| TTACCCAGGACTATGAGGCG+TGG | - | chr5.1:4847993-4848012 | None:intergenic | 55.0% | |
| TTCCAACAACCTTCCGCCTC+CGG | + | chr5.1:4846317-4846336 | MS.gene20369:CDS | 55.0% | |
| TTCCCACGCCTCATAGTCCT+GGG | + | chr5.1:4847987-4848006 | MS.gene20369:CDS | 55.0% | |
| ! | AGCTGAGAGAGAGCGTGACA+AGG | - | chr5.1:4846355-4846374 | None:intergenic | 55.0% |
| ! | CAGTGGTGGCTTTTGCTGCT+GGG | + | chr5.1:4848706-4848725 | MS.gene20369:CDS | 55.0% |
| ! | TGAGAGAGAGCGTGACAAGG+CGG | - | chr5.1:4846352-4846371 | None:intergenic | 55.0% |
| GAGTGCACCAGAAGCAGTGG+TGG | + | chr5.1:4848692-4848711 | MS.gene20369:CDS | 60.0% | |
| GGAGGCGGAAGGTTGTTGGA+AGG | - | chr5.1:4846318-4846337 | None:intergenic | 60.0% | |
| GGCGGAAGGTTGTTGGAAGG+AGG | - | chr5.1:4846315-4846334 | None:intergenic | 60.0% | |
| GTCACGCTCTCTCTCAGCTC+GGG | + | chr5.1:4846356-4846375 | MS.gene20369:CDS | 60.0% | |
| GTTCCCACGCCTCATAGTCC+TGG | + | chr5.1:4847986-4848005 | MS.gene20369:CDS | 60.0% | |
| TCTCTCTCAGCTCGGGTCAG+AGG | + | chr5.1:4846363-4846382 | MS.gene20369:CDS | 60.0% | |
| ! | AGAGAGAGCGTGACAAGGCG+GGG | - | chr5.1:4846350-4846369 | None:intergenic | 60.0% |
| ! | GAGAGAGAGCGTGACAAGGC+GGG | - | chr5.1:4846351-4846370 | None:intergenic | 60.0% |
| ! | GCAGTGGTGGCTTTTGCTGC+TGG | + | chr5.1:4848705-4848724 | MS.gene20369:CDS | 60.0% |
| CTCCGGAGGCGGAAGGTTGT+TGG | - | chr5.1:4846322-4846341 | None:intergenic | 65.0% | |
| ! | AGAGAGCGTGACAAGGCGGG+GGG | - | chr5.1:4846348-4846367 | None:intergenic | 65.0% |
| ! | GAGAGAGCGTGACAAGGCGG+GGG | - | chr5.1:4846349-4846368 | None:intergenic | 65.0% |
| ! | GAGAGCGTGACAAGGCGGGG+GGG | - | chr5.1:4846347-4846366 | None:intergenic | 70.0% |
| GACAAGGCGGGGGGGAGCTC+CGG | - | chr5.1:4846339-4846358 | None:intergenic | 75.0% | |
| ! | AAGGCGGGGGGGAGCTCCGG+AGG | - | chr5.1:4846336-4846355 | None:intergenic | 80.0% |
| ! | GGGGGAGCTCCGGAGGCGGA+AGG | - | chr5.1:4846329-4846348 | None:intergenic | 80.0% |
| ! | GCGGGGGGGAGCTCCGGAGG+CGG | - | chr5.1:4846333-4846352 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 4845935 | 4848943 | 4845935 | ID=MS.gene20369 |
| chr5.1 | mRNA | 4845935 | 4848943 | 4845935 | ID=MS.gene20369.t1;Parent=MS.gene20369 |
| chr5.1 | exon | 4845935 | 4846026 | 4845935 | ID=MS.gene20369.t1.exon1;Parent=MS.gene20369.t1 |
| chr5.1 | CDS | 4845935 | 4846026 | 4845935 | ID=cds.MS.gene20369.t1;Parent=MS.gene20369.t1 |
| chr5.1 | exon | 4846176 | 4846539 | 4846176 | ID=MS.gene20369.t1.exon2;Parent=MS.gene20369.t1 |
| chr5.1 | CDS | 4846176 | 4846539 | 4846176 | ID=cds.MS.gene20369.t1;Parent=MS.gene20369.t1 |
| chr5.1 | exon | 4846768 | 4846899 | 4846768 | ID=MS.gene20369.t1.exon3;Parent=MS.gene20369.t1 |
| chr5.1 | CDS | 4846768 | 4846899 | 4846768 | ID=cds.MS.gene20369.t1;Parent=MS.gene20369.t1 |
| chr5.1 | exon | 4847848 | 4848008 | 4847848 | ID=MS.gene20369.t1.exon4;Parent=MS.gene20369.t1 |
| chr5.1 | CDS | 4847848 | 4848008 | 4847848 | ID=cds.MS.gene20369.t1;Parent=MS.gene20369.t1 |
| chr5.1 | exon | 4848097 | 4848943 | 4848097 | ID=MS.gene20369.t1.exon5;Parent=MS.gene20369.t1 |
| chr5.1 | CDS | 4848097 | 4848943 | 4848097 | ID=cds.MS.gene20369.t1;Parent=MS.gene20369.t1 |
| Gene Sequence |
| Protein sequence |
