Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21902.t1 | XP_013453356.1 | 85.6 | 187 | 25 | 2 | 1 | 186 | 43 | 228 | 3.10E-84 | 321.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21902.t1 | Q8S8T8 | 54.5 | 187 | 78 | 4 | 2 | 182 | 3 | 188 | 1.5e-50 | 200.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21902.t1 | A0A072UD93 | 85.6 | 187 | 25 | 2 | 1 | 186 | 67 | 252 | 2.2e-84 | 321.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene21902 | 0.810148 | 1.33E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene21902 | 0.833223 | 6.03E-56 | -1.69E-46 |
| MS.gene050227 | MS.gene21902 | 0.808684 | 2.74E-50 | -1.69E-46 |
| MS.gene050330 | MS.gene21902 | -0.800017 | 1.76E-48 | -1.69E-46 |
| MS.gene050820 | MS.gene21902 | 0.807649 | 4.56E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene21902 | 0.819026 | 1.44E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene21902 | 0.824532 | 7.67E-54 | -1.69E-46 |
| MS.gene052077 | MS.gene21902 | 0.821153 | 4.70E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene21902 | 0.805386 | 1.37E-49 | -1.69E-46 |
| MS.gene052389 | MS.gene21902 | 0.807014 | 6.21E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene21902 | 0.813637 | 2.31E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene21902 | 0.825117 | 5.58E-54 | -1.69E-46 |
| MS.gene055701 | MS.gene21902 | 0.826066 | 3.33E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene21902 | 0.806284 | 8.86E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene21902 | 0.820906 | 5.35E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene21902 | 0.808768 | 2.63E-50 | -1.69E-46 |
| MS.gene058139 | MS.gene21902 | 0.944896 | 8.37E-104 | -1.69E-46 |
| MS.gene058142 | MS.gene21902 | 0.80607 | 9.83E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene21902 | 0.80615 | 9.46E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene21902 | 0.806212 | 9.18E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76507 | MS.gene21902 | PPI |
| MS.gene36326 | MS.gene21902 | PPI |
| MS.gene21902 | MS.gene47804 | PPI |
| MS.gene21902 | MS.gene85123 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21902.t1 | MTR_5g008240 | 85.561 | 187 | 25 | 2 | 1 | 186 | 67 | 252 | 3.38e-112 | 320 |
| MS.gene21902.t1 | MTR_5g008240 | 85.561 | 187 | 25 | 2 | 1 | 186 | 1 | 186 | 6.82e-112 | 317 |
| MS.gene21902.t1 | MTR_5g008240 | 85.561 | 187 | 25 | 2 | 1 | 186 | 43 | 228 | 1.10e-111 | 318 |
| MS.gene21902.t1 | MTR_5g008240 | 83.333 | 132 | 20 | 2 | 56 | 186 | 38 | 168 | 6.50e-72 | 215 |
| MS.gene21902.t1 | MTR_8g104890 | 33.333 | 132 | 73 | 4 | 32 | 163 | 25 | 141 | 1.74e-13 | 65.5 |
| MS.gene21902.t1 | MTR_3g408350 | 31.847 | 157 | 89 | 6 | 41 | 182 | 59 | 212 | 2.78e-12 | 63.5 |
| MS.gene21902.t1 | MTR_4g086330 | 30.872 | 149 | 76 | 8 | 38 | 177 | 61 | 191 | 1.78e-11 | 60.5 |
| MS.gene21902.t1 | MTR_0172s0050 | 27.976 | 168 | 92 | 6 | 41 | 186 | 63 | 223 | 5.90e-11 | 59.7 |
| MS.gene21902.t1 | MTR_8g104830 | 30.667 | 150 | 85 | 5 | 36 | 182 | 4 | 137 | 7.34e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21902.t1 | AT2G40935 | 54.545 | 187 | 78 | 4 | 2 | 182 | 3 | 188 | 5.65e-66 | 201 |
| MS.gene21902.t1 | AT2G40935 | 54.545 | 187 | 78 | 4 | 2 | 182 | 3 | 188 | 5.65e-66 | 201 |
| MS.gene21902.t1 | AT2G40935 | 54.545 | 187 | 78 | 4 | 2 | 182 | 3 | 188 | 5.65e-66 | 201 |
| MS.gene21902.t1 | AT2G40935 | 54.545 | 187 | 78 | 4 | 2 | 182 | 3 | 188 | 5.65e-66 | 201 |
| MS.gene21902.t1 | AT2G40935 | 54.545 | 187 | 78 | 4 | 2 | 182 | 3 | 188 | 5.65e-66 | 201 |
| MS.gene21902.t1 | AT2G40935 | 48.663 | 187 | 78 | 5 | 2 | 182 | 3 | 177 | 3.79e-53 | 167 |
| MS.gene21902.t1 | AT2G40935 | 56.250 | 128 | 54 | 2 | 56 | 182 | 38 | 164 | 1.68e-43 | 142 |
| MS.gene21902.t1 | AT2G40935 | 56.250 | 128 | 54 | 2 | 56 | 182 | 38 | 164 | 1.68e-43 | 142 |
| MS.gene21902.t1 | AT2G40935 | 56.250 | 128 | 54 | 2 | 56 | 182 | 38 | 164 | 1.68e-43 | 142 |
| MS.gene21902.t1 | AT5G35525 | 31.875 | 160 | 80 | 7 | 29 | 177 | 4 | 145 | 1.93e-11 | 59.7 |
| MS.gene21902.t1 | AT1G14870 | 29.697 | 165 | 86 | 7 | 23 | 177 | 1 | 145 | 2.09e-11 | 59.7 |
| MS.gene21902.t1 | AT1G14870 | 30.201 | 149 | 82 | 6 | 23 | 169 | 1 | 129 | 6.64e-11 | 58.2 |
Find 50 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAAGAATGCAGAATTTC+TGG | 0.136909 | 5.1:+2334350 | MS.gene21902:CDS |
| CTTTGTCCTTGCTACCTCTT+TGG | 0.163797 | 5.1:+2334330 | MS.gene21902:CDS |
| CAAGACTCCACAATATAAAA+TGG | 0.183305 | 5.1:-2334404 | None:intergenic |
| GGATCAAATCAATGGTCTTC+TGG | 0.256294 | 5.1:+2333264 | MS.gene21902:CDS |
| CTGGGTTCTGGCACGTTCAT+GGG | 0.276161 | 5.1:+2334369 | MS.gene21902:CDS |
| CAAATTATACTTTGATCTTA+AGG | 0.284771 | 5.1:-2334517 | None:intergenic |
| TCTGGGTTCTGGCACGTTCA+TGG | 0.317800 | 5.1:+2334368 | MS.gene21902:CDS |
| AATGCAGAATTTCTGGGTTC+TGG | 0.323080 | 5.1:+2334357 | MS.gene21902:CDS |
| TTTGTCCTTGCTACCTCTTT+GGG | 0.333564 | 5.1:+2334331 | MS.gene21902:CDS |
| GGCTTCTGTGCAGGTTGTAT+AGG | 0.363558 | 5.1:+2334303 | MS.gene21902:intron |
| CAGCTCTTTCGCGTATTTCA+CGG | 0.371837 | 5.1:-2335485 | None:intergenic |
| AAGATCAAAGTATAATTTGC+CGG | 0.391461 | 5.1:+2334521 | MS.gene21902:CDS |
| TGGAATCTGACTGCATTGTC+TGG | 0.399372 | 5.1:-2335560 | None:intergenic |
| GGGAAGAATGCAGAATTTCT+GGG | 0.403517 | 5.1:+2334351 | MS.gene21902:CDS |
| GTGAAATACGCGAAAGAGCT+GGG | 0.429175 | 5.1:+2335487 | MS.gene21902:CDS |
| TCCACCTGCTTACATCCCAT+TGG | 0.441939 | 5.1:+2333179 | MS.gene21902:CDS |
| CCACCTGCTTACATCCCATT+GGG | 0.443393 | 5.1:+2333180 | MS.gene21902:CDS |
| CGTGAAATACGCGAAAGAGC+TGG | 0.454935 | 5.1:+2335486 | MS.gene21902:CDS |
| AGGGTTGTGGCATTACTGAT+TGG | 0.487313 | 5.1:-2335580 | None:intergenic |
| AAGACTCCACAATATAAAAT+GGG | 0.490249 | 5.1:-2334403 | None:intergenic |
| GTTAAGTTCACAGACTTTGA+GGG | 0.506162 | 5.1:+2335146 | MS.gene21902:CDS |
| AGTTAAGTTCACAGACTTTG+AGG | 0.507854 | 5.1:+2335145 | MS.gene21902:CDS |
| ATTTCTCTTGAAAACACTCC+AGG | 0.515163 | 5.1:+2335176 | MS.gene21902:CDS |
| GACTGCATTGTCTGGACAGG+TGG | 0.519769 | 5.1:-2335552 | None:intergenic |
| TCTGAATCTGATTGACCCAA+TGG | 0.522303 | 5.1:-2333195 | None:intergenic |
| TCTGACTGCATTGTCTGGAC+AGG | 0.526290 | 5.1:-2335555 | None:intergenic |
| ATTCTGCATTCTTCCCAAAG+AGG | 0.532916 | 5.1:-2334344 | None:intergenic |
| GCCTGCTGCTTATTAACCGA+TGG | 0.548925 | 5.1:+2334435 | MS.gene21902:CDS |
| TCTCCTCTACACCATGGTGG+TGG | 0.555785 | 5.1:+2333231 | MS.gene21902:CDS |
| CACAAGCATAACACGAAACA+AGG | 0.556012 | 5.1:-2334482 | None:intergenic |
| GTAGCAATGGATCAAATCAA+TGG | 0.556803 | 5.1:+2333256 | MS.gene21902:CDS |
| CATGGTGGTGGTAGTAGCAA+TGG | 0.568325 | 5.1:+2333243 | MS.gene21902:CDS |
| TGAAGCTACAGATATGAAGC+TGG | 0.570972 | 5.1:+2335515 | MS.gene21902:CDS |
| GCCATCGGTTAATAAGCAGC+AGG | 0.572611 | 5.1:-2334436 | None:intergenic |
| TGACCCAATGGGATGTAAGC+AGG | 0.573937 | 5.1:-2333183 | None:intergenic |
| TTCTTCCCAAAGAGGTAGCA+AGG | 0.573956 | 5.1:-2334336 | None:intergenic |
| TGGGTTCTGGCACGTTCATG+GGG | 0.574682 | 5.1:+2334370 | MS.gene21902:CDS |
| TAACACGAAACAAGGCATCC+AGG | 0.577372 | 5.1:-2334474 | None:intergenic |
| CTTGTTTCGTGTTATGCTTG+TGG | 0.581137 | 5.1:+2334483 | MS.gene21902:CDS |
| CTGAATCTGATTGACCCAAT+GGG | 0.585943 | 5.1:-2333194 | None:intergenic |
| CTACCACCACCATGGTGTAG+AGG | 0.589434 | 5.1:-2333234 | None:intergenic |
| TCCATTATTATGAAGAACCA+AGG | 0.591583 | 5.1:+2333147 | None:intergenic |
| ACTTTGATCTTAAGGTATTG+CGG | 0.618835 | 5.1:-2334509 | None:intergenic |
| TGAAATACGCGAAAGAGCTG+GGG | 0.629440 | 5.1:+2335488 | MS.gene21902:CDS |
| CCCAATGGGATGTAAGCAGG+TGG | 0.640544 | 5.1:-2333180 | None:intergenic |
| CAGGTGGAACATAACCACCT+TGG | 0.653627 | 5.1:-2333164 | None:intergenic |
| CATTGCTACTACCACCACCA+TGG | 0.662654 | 5.1:-2333242 | None:intergenic |
| GTCTCTCCTCTACACCATGG+TGG | 0.675080 | 5.1:+2333228 | MS.gene21902:CDS |
| ATTATTATGAAGAACCAAGG+TGG | 0.688442 | 5.1:+2333150 | None:intergenic |
| AGTGTCTCTCCTCTACACCA+TGG | 0.703188 | 5.1:+2333225 | MS.gene21902:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTGATGTATATATAAA+GGG | + | chr5.1:2333984-2334003 | MS.gene21902:intron | 10.0% |
| !! | AAAAATCATTTGACTAATTA+CGG | - | chr5.1:2334146-2334165 | None:intergenic | 15.0% |
| !! | AGTAAATTTGAAGAATAATT+AGG | + | chr5.1:2334748-2334767 | MS.gene21902:intron | 15.0% |
| !! | GTTATTTGATGTATATATAA+AGG | + | chr5.1:2333983-2334002 | MS.gene21902:intron | 15.0% |
| !! | TTAATAATGAAAAGAAAATC+TGG | + | chr5.1:2335352-2335371 | MS.gene21902:intron | 15.0% |
| !! | ACATCCAAAAAATTTAGATT+GGG | - | chr5.1:2335318-2335337 | None:intergenic | 20.0% |
| !! | AGAAATTGAAATAAACTTGT+AGG | + | chr5.1:2335071-2335090 | MS.gene21902:intron | 20.0% |
| !! | ATAAAATTTGATGTAAAGCA+TGG | - | chr5.1:2334561-2334580 | None:intergenic | 20.0% |
| !! | ATGTGATAAAAATGAAAGAA+AGG | + | chr5.1:2334926-2334945 | MS.gene21902:intron | 20.0% |
| !! | CAAATTATACTTTGATCTTA+AGG | - | chr5.1:2334520-2334539 | None:intergenic | 20.0% |
| !! | TAATAGTAAAAGAACTGTTT+AGG | + | chr5.1:2334778-2334797 | MS.gene21902:intron | 20.0% |
| !! | TGCTAAAATTTCTCTATTAA+AGG | - | chr5.1:2335281-2335300 | None:intergenic | 20.0% |
| !! | TTTGTATGTTTGTTTGTTTA+AGG | + | chr5.1:2333372-2333391 | MS.gene21902:intron | 20.0% |
| !!! | AAAGATTGGTTTCAAATTTT+CGG | + | chr5.1:2334282-2334301 | MS.gene21902:intron | 20.0% |
| !!! | AAGTTCTGAATTTTATTGTT+TGG | + | chr5.1:2333819-2333838 | MS.gene21902:intron | 20.0% |
| !!! | AGATGCATTTTTTGAAAAAA+AGG | + | chr5.1:2335250-2335269 | MS.gene21902:intron | 20.0% |
| !!! | ATATTCTTTTTGTCTTATGA+AGG | + | chr5.1:2335398-2335417 | MS.gene21902:intron | 20.0% |
| ! | AAGACTCCACAATATAAAAT+GGG | - | chr5.1:2334406-2334425 | None:intergenic | 25.0% |
| ! | AATAGTAAATGGTTCTTAAC+TGG | + | chr5.1:2334712-2334731 | MS.gene21902:intron | 25.0% |
| ! | AATTGGGGTAAAATAGTAAA+TGG | + | chr5.1:2334701-2334720 | MS.gene21902:intron | 25.0% |
| ! | ATACAAACATAATCAACAAG+AGG | - | chr5.1:2333359-2333378 | None:intergenic | 25.0% |
| ! | ATACTCTCTTATGTAGAAAT+TGG | - | chr5.1:2334976-2334995 | None:intergenic | 25.0% |
| ! | CATCCTAAAAATAGTATTCT+CGG | - | chr5.1:2333700-2333719 | None:intergenic | 25.0% |
| ! | CATGGTTGTAATATTATTAC+CGG | - | chr5.1:2334543-2334562 | None:intergenic | 25.0% |
| ! | CTAAGAAAAATCTTCTACTA+AGG | - | chr5.1:2333538-2333557 | None:intergenic | 25.0% |
| ! | GAACAGAAAATAGAAAGAAA+AGG | - | chr5.1:2334598-2334617 | None:intergenic | 25.0% |
| ! | GACATCCAAAAAATTTAGAT+TGG | - | chr5.1:2335319-2335338 | None:intergenic | 25.0% |
| ! | TAACTCACTGAACTTATTTA+TGG | + | chr5.1:2333909-2333928 | MS.gene21902:intron | 25.0% |
| ! | TATTCTTCAAATTTACTGAC+TGG | - | chr5.1:2334745-2334764 | None:intergenic | 25.0% |
| ! | TGTTTAACAAACACAAGAAA+AGG | - | chr5.1:2333868-2333887 | None:intergenic | 25.0% |
| !! | AAGATCAAAGTATAATTTGC+CGG | + | chr5.1:2334521-2334540 | MS.gene21902:CDS | 25.0% |
| !! | ACTTTTTGTAACATACAGAA+AGG | - | chr5.1:2334228-2334247 | None:intergenic | 25.0% |
| !! | TTTCTTTCTATTTTCTGTTC+TGG | + | chr5.1:2334598-2334617 | MS.gene21902:intron | 25.0% |
| !!! | ATCACCCAATCTAAATTTTT+TGG | + | chr5.1:2335311-2335330 | MS.gene21902:intron | 25.0% |
| !!! | CAATTTCTAGTTTTCTTCTA+GGG | - | chr5.1:2335059-2335078 | None:intergenic | 25.0% |
| !!! | TCAATTTCTAGTTTTCTTCT+AGG | - | chr5.1:2335060-2335079 | None:intergenic | 25.0% |
| AAACTGGCAAATGAAAAGAT+TGG | + | chr5.1:2334268-2334287 | MS.gene21902:intron | 30.0% | |
| AACTGTTTAGGTATGTTAGT+AGG | + | chr5.1:2334790-2334809 | MS.gene21902:intron | 30.0% | |
| AATAACCACTGATGTGAAAT+AGG | - | chr5.1:2333969-2333988 | None:intergenic | 30.0% | |
| ACACAGATGACAACAAAAAT+GGG | - | chr5.1:2335448-2335467 | None:intergenic | 30.0% | |
| ACTGTTTAGGTATGTTAGTA+GGG | + | chr5.1:2334791-2334810 | MS.gene21902:intron | 30.0% | |
| AGATTGATTGATAAGCTCAT+TGG | + | chr5.1:2333599-2333618 | MS.gene21902:intron | 30.0% | |
| ATAACCACTGATGTGAAATA+GGG | - | chr5.1:2333968-2333987 | None:intergenic | 30.0% | |
| CAAGACTCCACAATATAAAA+TGG | - | chr5.1:2334407-2334426 | None:intergenic | 30.0% | |
| CACAATGCATAATATATGCA+AGG | + | chr5.1:2334044-2334063 | MS.gene21902:intron | 30.0% | |
| CTAGGAAAATATTTAGGCAT+AGG | - | chr5.1:2335226-2335245 | None:intergenic | 30.0% | |
| CTGCAACTAGGAAAATATTT+AGG | - | chr5.1:2335232-2335251 | None:intergenic | 30.0% | |
| TCACTGAACTTATTTATGGT+TGG | + | chr5.1:2333913-2333932 | MS.gene21902:intron | 30.0% | |
| TGATGTATATATAAAGGGCA+TGG | + | chr5.1:2333989-2334008 | MS.gene21902:intron | 30.0% | |
| ! | CAGAATTTCTGAATCCTTTT+AGG | + | chr5.1:2335115-2335134 | MS.gene21902:intron | 30.0% |
| ! | CTTAACTTGAACTACCTAAA+AGG | - | chr5.1:2335132-2335151 | None:intergenic | 30.0% |
| ! | GTGTTACCCATTTTATATTG+TGG | + | chr5.1:2334397-2334416 | MS.gene21902:CDS | 30.0% |
| ! | TGAGACTGGTTAATGTAATT+GGG | + | chr5.1:2334685-2334704 | MS.gene21902:intron | 30.0% |
| !! | ACTTTGATCTTAAGGTATTG+CGG | - | chr5.1:2334512-2334531 | None:intergenic | 30.0% |
| !!! | CGAGAATACTATTTTTAGGA+TGG | + | chr5.1:2333698-2333717 | MS.gene21902:intron | 30.0% |
| !!! | TCCATGCCCTTTTTTTTTTT+GGG | - | chr5.1:2334095-2334114 | None:intergenic | 30.0% |
| !!! | TCTGCTTTTTTTCGATAAAC+TGG | + | chr5.1:2334252-2334271 | MS.gene21902:intron | 30.0% |
| AAAAGATCTCACTGATCAGT+GGG | - | chr5.1:2333749-2333768 | None:intergenic | 35.0% | |
| ACAGTACATGTTCCTTATTG+TGG | - | chr5.1:2333670-2333689 | None:intergenic | 35.0% | |
| ACCCAAAAAAAAAAAGGGCA+TGG | + | chr5.1:2334091-2334110 | MS.gene21902:intron | 35.0% | |
| ACGAATGTAGGAGAAAAATG+AGG | + | chr5.1:2333493-2333512 | MS.gene21902:intron | 35.0% | |
| AGTAAATGGTTCTTAACTGG+AGG | + | chr5.1:2334715-2334734 | MS.gene21902:intron | 35.0% | |
| AGTTAAGTTCACAGACTTTG+AGG | + | chr5.1:2335145-2335164 | MS.gene21902:CDS | 35.0% | |
| ATTTCTCTTGAAAACACTCC+AGG | + | chr5.1:2335176-2335195 | MS.gene21902:CDS | 35.0% | |
| CAAAAAATGCATCTGCAACT+AGG | - | chr5.1:2335244-2335263 | None:intergenic | 35.0% | |
| CACACAGATGACAACAAAAA+TGG | - | chr5.1:2335449-2335468 | None:intergenic | 35.0% | |
| CAGTACATGTTCCTTATTGT+GGG | - | chr5.1:2333669-2333688 | None:intergenic | 35.0% | |
| CATAATATATGCAAGGTCCA+GGG | + | chr5.1:2334051-2334070 | MS.gene21902:intron | 35.0% | |
| CCACCACCCAAAAAAAAAAA+GGG | + | chr5.1:2334086-2334105 | MS.gene21902:intron | 35.0% | |
| CCTAAAAATAGTATTCTCGG+CGG | - | chr5.1:2333697-2333716 | None:intergenic | 35.0% | |
| CGAATGTAGGAGAAAAATGA+GGG | + | chr5.1:2333494-2333513 | MS.gene21902:intron | 35.0% | |
| CTGATAGAGTTAGATAATGC+AGG | + | chr5.1:2335005-2335024 | MS.gene21902:intron | 35.0% | |
| CTTGACAATAAGGATTAGGA+GGG | + | chr5.1:2333795-2333814 | MS.gene21902:intron | 35.0% | |
| GAATGTAGGAGAAAAATGAG+GGG | + | chr5.1:2333495-2333514 | MS.gene21902:intron | 35.0% | |
| GTAGCAATGGATCAAATCAA+TGG | + | chr5.1:2333256-2333275 | MS.gene21902:CDS | 35.0% | |
| GTTAAGTTCACAGACTTTGA+GGG | + | chr5.1:2335146-2335165 | MS.gene21902:CDS | 35.0% | |
| TAAAAGATCTCACTGATCAG+TGG | - | chr5.1:2333750-2333769 | None:intergenic | 35.0% | |
| TAACCACTGATGTGAAATAG+GGG | - | chr5.1:2333967-2333986 | None:intergenic | 35.0% | |
| TCTATAGGAAGTGAAAAGCT+GGG | - | chr5.1:2334832-2334851 | None:intergenic | 35.0% | |
| TGATTGATAAGCTCATTGGT+TGG | + | chr5.1:2333603-2333622 | MS.gene21902:intron | 35.0% | |
| TTGACAATAAGGATTAGGAG+GGG | + | chr5.1:2333796-2333815 | MS.gene21902:intron | 35.0% | |
| ! | AGTTAGATAATGCAGGTTGA+AGG | + | chr5.1:2335012-2335031 | MS.gene21902:intron | 35.0% |
| ! | CTTACCTTGTTTAATCACCA+AGG | + | chr5.1:2333331-2333350 | MS.gene21902:intron | 35.0% |
| ! | CTTGGTGATTAAACAAGGTA+AGG | - | chr5.1:2333333-2333352 | None:intergenic | 35.0% |
| ! | GAGACTGGTTAATGTAATTG+GGG | + | chr5.1:2334686-2334705 | MS.gene21902:intron | 35.0% |
| ! | GTGAGACTGGTTAATGTAAT+TGG | + | chr5.1:2334684-2334703 | MS.gene21902:intron | 35.0% |
| ! | GTTAGATAATGCAGGTTGAA+GGG | + | chr5.1:2335013-2335032 | MS.gene21902:intron | 35.0% |
| !! | AGTTTTCTTCTAGGGAAAAC+TGG | - | chr5.1:2335051-2335070 | None:intergenic | 35.0% |
| !! | TTTTGACTGCCTTGACAATA+AGG | + | chr5.1:2333785-2333804 | MS.gene21902:intron | 35.0% |
| !!! | ATGCCCTTTTTTTTTTTGGG+TGG | - | chr5.1:2334092-2334111 | None:intergenic | 35.0% |
| !!! | ATTTTTAGGATGGATGACAC+TGG | + | chr5.1:2333708-2333727 | MS.gene21902:intron | 35.0% |
| !!! | CTCCATGCCCTTTTTTTTTT+TGG | - | chr5.1:2334096-2334115 | None:intergenic | 35.0% |
| AACCACTGATGTGAAATAGG+GGG | - | chr5.1:2333966-2333985 | None:intergenic | 40.0% | |
| AGAAAAATGAGGGGAACTAG+AGG | + | chr5.1:2333504-2333523 | MS.gene21902:intron | 40.0% | |
| ATCCAGGTAAACCCAAAAAC+AGG | - | chr5.1:2334461-2334480 | None:intergenic | 40.0% | |
| ATTCTGCATTCTTCCCAAAG+AGG | - | chr5.1:2334347-2334366 | None:intergenic | 40.0% | |
| CACAAGCATAACACGAAACA+AGG | - | chr5.1:2334485-2334504 | None:intergenic | 40.0% | |
| CCTCCTAATCCTTATTGTCA+AGG | - | chr5.1:2333797-2333816 | None:intergenic | 40.0% | |
| CCTTGACAATAAGGATTAGG+AGG | + | chr5.1:2333794-2333813 | MS.gene21902:intron | 40.0% | |
| CTATAGGAAGTGAAAAGCTG+GGG | - | chr5.1:2334831-2334850 | None:intergenic | 40.0% | |
| CTGAATCTGATTGACCCAAT+GGG | - | chr5.1:2333197-2333216 | None:intergenic | 40.0% | |
| CTGCCTTGACAATAAGGATT+AGG | + | chr5.1:2333791-2333810 | MS.gene21902:intron | 40.0% | |
| CTTGTTTCGTGTTATGCTTG+TGG | + | chr5.1:2334483-2334502 | MS.gene21902:CDS | 40.0% | |
| GCATAATATATGCAAGGTCC+AGG | + | chr5.1:2334050-2334069 | MS.gene21902:intron | 40.0% | |
| GCCACCACCCAAAAAAAAAA+AGG | + | chr5.1:2334085-2334104 | MS.gene21902:intron | 40.0% | |
| GGATCAAATCAATGGTCTTC+TGG | + | chr5.1:2333264-2333283 | MS.gene21902:CDS | 40.0% | |
| GGGAAGAATGCAGAATTTCT+GGG | + | chr5.1:2334351-2334370 | MS.gene21902:CDS | 40.0% | |
| GTCTATAGGAAGTGAAAAGC+TGG | - | chr5.1:2334833-2334852 | None:intergenic | 40.0% | |
| GTTGGAACCTTATGTTGGAT+GGG | + | chr5.1:2333625-2333644 | MS.gene21902:intron | 40.0% | |
| TAAACCCAAAAACAGGCCAT+CGG | - | chr5.1:2334454-2334473 | None:intergenic | 40.0% | |
| TCTGAATCTGATTGACCCAA+TGG | - | chr5.1:2333198-2333217 | None:intergenic | 40.0% | |
| TGAAGCTACAGATATGAAGC+TGG | + | chr5.1:2335515-2335534 | MS.gene21902:CDS | 40.0% | |
| TGGGAAGAATGCAGAATTTC+TGG | + | chr5.1:2334350-2334369 | MS.gene21902:CDS | 40.0% | |
| TGTTCCTTATTGTGGGTCTA+TGG | - | chr5.1:2333662-2333681 | None:intergenic | 40.0% | |
| TTCACGGTACTCTTGACAAA+TGG | - | chr5.1:2335472-2335491 | None:intergenic | 40.0% | |
| TTTGTCCTTGCTACCTCTTT+GGG | + | chr5.1:2334331-2334350 | MS.gene21902:CDS | 40.0% | |
| ! | AATGCAGAATTTCTGGGTTC+TGG | + | chr5.1:2334357-2334376 | MS.gene21902:CDS | 40.0% |
| ! | ATTAACCGATGGCCTGTTTT+TGG | + | chr5.1:2334446-2334465 | MS.gene21902:CDS | 40.0% |
| ! | CAGTGAGATCTTTTACGAGT+AGG | + | chr5.1:2333755-2333774 | MS.gene21902:intron | 40.0% |
| ! | TGATAAGCTCATTGGTTGGT+TGG | + | chr5.1:2333607-2333626 | MS.gene21902:intron | 40.0% |
| !! | ATAATCAACAAGAGGCACCT+TGG | - | chr5.1:2333351-2333370 | None:intergenic | 40.0% |
| !! | CCGCCGAGAATACTATTTTT+AGG | + | chr5.1:2333694-2333713 | MS.gene21902:intron | 40.0% |
| !! | TGTTGCATTTTGAGTGAGAC+TGG | + | chr5.1:2334671-2334690 | MS.gene21902:intron | 40.0% |
| !! | TTAACCGATGGCCTGTTTTT+GGG | + | chr5.1:2334447-2334466 | MS.gene21902:CDS | 40.0% |
| !!! | CCCTTTTTTTTTTTGGGTGG+TGG | - | chr5.1:2334089-2334108 | None:intergenic | 40.0% |
| ATCTCACTGATCAGTGGGAT+AGG | - | chr5.1:2333744-2333763 | None:intergenic | 45.0% | |
| CAGCTCTTTCGCGTATTTCA+CGG | - | chr5.1:2335488-2335507 | None:intergenic | 45.0% | |
| CTTATGTTGGATGGGAAGAC+CGG | + | chr5.1:2333633-2333652 | MS.gene21902:intron | 45.0% | |
| CTTTGTCCTTGCTACCTCTT+TGG | + | chr5.1:2334330-2334349 | MS.gene21902:CDS | 45.0% | |
| GCTACCATAGACCCACAATA+AGG | + | chr5.1:2333655-2333674 | MS.gene21902:intron | 45.0% | |
| GGTTGGAACCTTATGTTGGA+TGG | + | chr5.1:2333624-2333643 | MS.gene21902:intron | 45.0% | |
| GTGAAATACGCGAAAGAGCT+GGG | + | chr5.1:2335487-2335506 | MS.gene21902:CDS | 45.0% | |
| GTGCTAGATGACACGAATGT+AGG | + | chr5.1:2333481-2333500 | MS.gene21902:intron | 45.0% | |
| TATTGTGGGTCTATGGTAGC+CGG | - | chr5.1:2333655-2333674 | None:intergenic | 45.0% | |
| TGAAATACGCGAAAGAGCTG+GGG | + | chr5.1:2335488-2335507 | MS.gene21902:CDS | 45.0% | |
| TGGAATCTGACTGCATTGTC+TGG | - | chr5.1:2335563-2335582 | None:intergenic | 45.0% | |
| TGGGTTACAAAATCCCCACA+CGG | - | chr5.1:2335429-2335448 | None:intergenic | 45.0% | |
| TTCCCCCTATTTCACATCAG+TGG | + | chr5.1:2333961-2333980 | MS.gene21902:intron | 45.0% | |
| TTCTTCCCAAAGAGGTAGCA+AGG | - | chr5.1:2334339-2334358 | None:intergenic | 45.0% | |
| ! | CAAATTTTCGGCTTCTGTGC+AGG | + | chr5.1:2334294-2334313 | MS.gene21902:intron | 45.0% |
| ! | GGCACCTTGGTGATTAAACA+AGG | - | chr5.1:2333338-2333357 | None:intergenic | 45.0% |
| ! | GGTTGGTTGGAACCTTATGT+TGG | + | chr5.1:2333620-2333639 | MS.gene21902:intron | 45.0% |
| ! | TAACACGAAACAAGGCATCC+AGG | - | chr5.1:2334477-2334496 | None:intergenic | 45.0% |
| ! | TGAAAACACTCCAGGTACTG+TGG | + | chr5.1:2335184-2335203 | MS.gene21902:intron | 45.0% |
| !! | TGCTGCTACTTGCTGTCTAT+AGG | - | chr5.1:2334847-2334866 | None:intergenic | 45.0% |
| !! | TTATGAAGGAAGCACCGTGT+GGG | + | chr5.1:2335412-2335431 | MS.gene21902:intron | 45.0% |
| !!! | TTTTTTTTGGGTGGTGGCCA+GGG | - | chr5.1:2334083-2334102 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTGGGTGGTGGCC+AGG | - | chr5.1:2334084-2334103 | None:intergenic | 45.0% |
| AGTGTCTCTCCTCTACACCA+TGG | + | chr5.1:2333225-2333244 | MS.gene21902:CDS | 50.0% | |
| CAGGTGGAACATAACCACCT+TGG | - | chr5.1:2333167-2333186 | None:intergenic | 50.0% | |
| CATTGCTACTACCACCACCA+TGG | - | chr5.1:2333245-2333264 | None:intergenic | 50.0% | |
| CCACCTGCTTACATCCCATT+GGG | + | chr5.1:2333180-2333199 | MS.gene21902:CDS | 50.0% | |
| CGGTCTTCCCATCCAACATA+AGG | - | chr5.1:2333635-2333654 | None:intergenic | 50.0% | |
| CGTGAAATACGCGAAAGAGC+TGG | + | chr5.1:2335486-2335505 | MS.gene21902:CDS | 50.0% | |
| CTCATCTCAGATGATGTGCC+AGG | - | chr5.1:2334879-2334898 | None:intergenic | 50.0% | |
| GGCTTCTGTGCAGGTTGTAT+AGG | + | chr5.1:2334303-2334322 | MS.gene21902:intron | 50.0% | |
| GTAGCAGCAACTTTGAGTCC+TGG | + | chr5.1:2334858-2334877 | MS.gene21902:intron | 50.0% | |
| TCCACCTGCTTACATCCCAT+TGG | + | chr5.1:2333179-2333198 | MS.gene21902:CDS | 50.0% | |
| TCTGACTGCATTGTCTGGAC+AGG | - | chr5.1:2335558-2335577 | None:intergenic | 50.0% | |
| TGACCCAATGGGATGTAAGC+AGG | - | chr5.1:2333186-2333205 | None:intergenic | 50.0% | |
| ! | GCCATCGGTTAATAAGCAGC+AGG | - | chr5.1:2334439-2334458 | None:intergenic | 50.0% |
| ! | GCCTGCTGCTTATTAACCGA+TGG | + | chr5.1:2334435-2334454 | MS.gene21902:CDS | 50.0% |
| !! | CATGGTGGTGGTAGTAGCAA+TGG | + | chr5.1:2333243-2333262 | MS.gene21902:CDS | 50.0% |
| !! | CTTATGAAGGAAGCACCGTG+TGG | + | chr5.1:2335411-2335430 | MS.gene21902:intron | 50.0% |
| !! | GAGAAGTGTTCCACAGTACC+TGG | - | chr5.1:2335197-2335216 | None:intergenic | 50.0% |
| !! | TATGAAGGAAGCACCGTGTG+GGG | + | chr5.1:2335413-2335432 | MS.gene21902:intron | 50.0% |
| !!! | GGCCTGTTTTTGGGTTTACC+TGG | + | chr5.1:2334456-2334475 | MS.gene21902:CDS | 50.0% |
| AAGGTCCAGGGTTCAAACCC+TGG | + | chr5.1:2334063-2334082 | MS.gene21902:intron | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr5.1:2334020-2334039 | None:intergenic | 55.0% | |
| CCCAATGGGATGTAAGCAGG+TGG | - | chr5.1:2333183-2333202 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr5.1:2334017-2334036 | MS.gene21902:intron | 55.0% | |
| CTACCACCACCATGGTGTAG+AGG | - | chr5.1:2333237-2333256 | None:intergenic | 55.0% | |
| GACTGCATTGTCTGGACAGG+TGG | - | chr5.1:2335555-2335574 | None:intergenic | 55.0% | |
| GTCTCTCCTCTACACCATGG+TGG | + | chr5.1:2333228-2333247 | MS.gene21902:CDS | 55.0% | |
| TCTCCTCTACACCATGGTGG+TGG | + | chr5.1:2333231-2333250 | MS.gene21902:CDS | 55.0% | |
| ! | CTGGGTTCTGGCACGTTCAT+GGG | + | chr5.1:2334369-2334388 | MS.gene21902:CDS | 55.0% |
| ! | TCTGGGTTCTGGCACGTTCA+TGG | + | chr5.1:2334368-2334387 | MS.gene21902:CDS | 55.0% |
| ! | TGGGTTCTGGCACGTTCATG+GGG | + | chr5.1:2334370-2334389 | MS.gene21902:CDS | 55.0% |
| GGTGGCCAGGGTTTGAACCC+TGG | - | chr5.1:2334071-2334090 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 2333156 | 2335590 | 2333156 | ID=MS.gene21902 |
| chr5.1 | mRNA | 2333156 | 2335590 | 2333156 | ID=MS.gene21902.t1;Parent=MS.gene21902 |
| chr5.1 | exon | 2333156 | 2333318 | 2333156 | ID=MS.gene21902.t1.exon1;Parent=MS.gene21902.t1 |
| chr5.1 | CDS | 2333156 | 2333318 | 2333156 | ID=cds.MS.gene21902.t1;Parent=MS.gene21902.t1 |
| chr5.1 | exon | 2334316 | 2334542 | 2334316 | ID=MS.gene21902.t1.exon2;Parent=MS.gene21902.t1 |
| chr5.1 | CDS | 2334316 | 2334542 | 2334316 | ID=cds.MS.gene21902.t1;Parent=MS.gene21902.t1 |
| chr5.1 | exon | 2335137 | 2335197 | 2335137 | ID=MS.gene21902.t1.exon3;Parent=MS.gene21902.t1 |
| chr5.1 | CDS | 2335137 | 2335197 | 2335137 | ID=cds.MS.gene21902.t1;Parent=MS.gene21902.t1 |
| chr5.1 | exon | 2335481 | 2335590 | 2335481 | ID=MS.gene21902.t1.exon4;Parent=MS.gene21902.t1 |
| chr5.1 | CDS | 2335481 | 2335590 | 2335481 | ID=cds.MS.gene21902.t1;Parent=MS.gene21902.t1 |
| Gene Sequence |
| Protein sequence |
