Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59384.t1 | XP_003612033.1 | 97.6 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 1.60E-234 | 821.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59384.t1 | Q6Z2G9 | 62.7 | 434 | 138 | 7 | 1 | 416 | 1 | 428 | 3.2e-146 | 519.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59384.t1 | G7KEX1 | 97.6 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 1.2e-234 | 821.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59384.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene59384 | -0.821042 | 4.98E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene59384 | -0.806142 | 9.50E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene59384 | -0.80455 | 2.05E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene59384 | -0.80287 | 4.57E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene59384 | 0.839713 | 1.34E-57 | -1.69E-46 |
| MS.gene050670 | MS.gene59384 | -0.839479 | 1.55E-57 | -1.69E-46 |
| MS.gene050820 | MS.gene59384 | -0.816255 | 6.08E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene59384 | -0.832914 | 7.20E-56 | -1.69E-46 |
| MS.gene051860 | MS.gene59384 | -0.82265 | 2.11E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene59384 | -0.82043 | 6.89E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene59384 | 0.851345 | 9.43E-61 | -1.69E-46 |
| MS.gene052077 | MS.gene59384 | -0.823935 | 1.06E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene59384 | -0.823977 | 1.04E-53 | -1.69E-46 |
| MS.gene052253 | MS.gene59384 | -0.829194 | 5.90E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene59384 | -0.854135 | 1.51E-61 | -1.69E-46 |
| MS.gene054183 | MS.gene59384 | -0.842017 | 3.34E-58 | -1.69E-46 |
| MS.gene054473 | MS.gene59384 | -0.82281 | 1.94E-53 | -1.69E-46 |
| MS.gene054719 | MS.gene59384 | -0.811345 | 7.34E-51 | -1.69E-46 |
| MS.gene054918 | MS.gene59384 | -0.823679 | 1.22E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene59384 | -0.838591 | 2.63E-57 | -1.69E-46 |
| MS.gene054983 | MS.gene59384 | -0.816081 | 6.65E-52 | -1.69E-46 |
| MS.gene055428 | MS.gene59384 | -0.806747 | 7.08E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene59384 | -0.823968 | 1.04E-53 | -1.69E-46 |
| MS.gene05594 | MS.gene59384 | -0.802989 | 4.32E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene59384 | -0.812844 | 3.45E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene59384 | -0.837394 | 5.33E-57 | -1.69E-46 |
| MS.gene056659 | MS.gene59384 | -0.805447 | 1.33E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene59384 | -0.827272 | 1.71E-54 | -1.69E-46 |
| MS.gene056899 | MS.gene59384 | 0.81488 | 1.23E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene59384 | -0.816464 | 5.46E-52 | -1.69E-46 |
| MS.gene057121 | MS.gene59384 | -0.809809 | 1.57E-50 | -1.69E-46 |
| MS.gene057244 | MS.gene59384 | 0.808788 | 2.61E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene59384 | -0.807623 | 4.62E-50 | -1.69E-46 |
| MS.gene057476 | MS.gene59384 | -0.811972 | 5.36E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene59384 | -0.808132 | 3.60E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene59384 | -0.806967 | 6.36E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene59384 | -0.808987 | 2.36E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene59384 | -0.805735 | 1.16E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene59384 | -0.865322 | 6.42E-65 | -1.69E-46 |
| MS.gene05886 | MS.gene59384 | -0.836146 | 1.11E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene59384 | -0.821228 | 4.51E-53 | -1.69E-46 |
| MS.gene059247 | MS.gene59384 | -0.803599 | 3.23E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene59384 | -0.84559 | 3.69E-59 | -1.69E-46 |
| MS.gene059420 | MS.gene59384 | -0.856416 | 3.27E-62 | -1.69E-46 |
| MS.gene059462 | MS.gene59384 | -0.809528 | 1.81E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene59384 | -0.819016 | 1.45E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene59384 | -0.812834 | 3.47E-51 | -1.69E-46 |
| MS.gene061114 | MS.gene59384 | 0.831027 | 2.11E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59384 | MS.gene24262 | PPI |
| MS.gene27297 | MS.gene59384 | PPI |
| MS.gene26978 | MS.gene59384 | PPI |
| MS.gene90691 | MS.gene59384 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59384.t1 | MTR_5g020580 | 97.596 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 0.0 | 841 |
| MS.gene59384.t1 | MTR_8g077195 | 74.519 | 416 | 102 | 2 | 1 | 416 | 1 | 412 | 0.0 | 649 |
| MS.gene59384.t1 | MTR_1g022370 | 62.903 | 434 | 131 | 8 | 1 | 416 | 1 | 422 | 0.0 | 527 |
| MS.gene59384.t1 | MTR_8g077620 | 57.869 | 413 | 139 | 9 | 1 | 407 | 1 | 384 | 2.88e-160 | 457 |
| MS.gene59384.t1 | MTR_8g077675 | 58.111 | 413 | 151 | 9 | 1 | 409 | 1 | 395 | 3.37e-159 | 454 |
| MS.gene59384.t1 | MTR_2g007930 | 55.069 | 434 | 170 | 12 | 1 | 416 | 1 | 427 | 1.36e-153 | 441 |
| MS.gene59384.t1 | MTR_2g020280 | 57.182 | 369 | 151 | 3 | 48 | 416 | 32 | 393 | 1.99e-149 | 429 |
| MS.gene59384.t1 | MTR_1g098790 | 53.182 | 440 | 173 | 12 | 1 | 416 | 1 | 431 | 7.95e-149 | 429 |
| MS.gene59384.t1 | MTR_1g088960 | 52.871 | 418 | 179 | 7 | 1 | 416 | 1 | 402 | 4.04e-146 | 421 |
| MS.gene59384.t1 | MTR_2g076200 | 50.829 | 362 | 146 | 2 | 55 | 416 | 42 | 371 | 2.99e-127 | 372 |
| MS.gene59384.t1 | MTR_8g077650 | 51.786 | 392 | 113 | 12 | 37 | 413 | 3 | 333 | 4.95e-119 | 350 |
| MS.gene59384.t1 | MTR_2g020280 | 58.140 | 301 | 119 | 3 | 116 | 416 | 1 | 294 | 2.83e-118 | 346 |
| MS.gene59384.t1 | MTR_2g076210 | 44.772 | 373 | 167 | 6 | 48 | 416 | 30 | 367 | 5.36e-101 | 305 |
| MS.gene59384.t1 | MTR_8g077640 | 58.667 | 225 | 65 | 5 | 1 | 207 | 46 | 260 | 3.34e-69 | 224 |
| MS.gene59384.t1 | MTR_8g077640 | 55.556 | 117 | 51 | 1 | 291 | 406 | 267 | 383 | 1.89e-33 | 129 |
| MS.gene59384.t1 | MTR_1g023800 | 53.704 | 162 | 70 | 2 | 1 | 161 | 1 | 158 | 1.06e-55 | 181 |
| MS.gene59384.t1 | MTR_0210s0010 | 71.134 | 97 | 22 | 1 | 98 | 194 | 9 | 99 | 3.68e-37 | 131 |
| MS.gene59384.t1 | MTR_0479s0040 | 74.286 | 70 | 12 | 1 | 114 | 183 | 12 | 75 | 2.97e-25 | 98.6 |
| MS.gene59384.t1 | MTR_2g105390 | 36.697 | 109 | 54 | 4 | 313 | 415 | 260 | 359 | 2.02e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59384.t1 | AT2G18280 | 63.876 | 418 | 124 | 7 | 1 | 416 | 1 | 393 | 0.0 | 518 |
| MS.gene59384.t1 | AT2G18280 | 63.876 | 418 | 124 | 7 | 1 | 416 | 1 | 393 | 0.0 | 518 |
| MS.gene59384.t1 | AT1G47270 | 58.333 | 396 | 131 | 9 | 32 | 416 | 16 | 388 | 9.23e-155 | 442 |
| MS.gene59384.t1 | AT1G47270 | 58.333 | 396 | 131 | 9 | 32 | 416 | 41 | 413 | 1.19e-154 | 443 |
| MS.gene59384.t1 | AT1G47270 | 58.333 | 396 | 131 | 9 | 32 | 416 | 40 | 412 | 1.35e-154 | 443 |
| MS.gene59384.t1 | AT1G25280 | 53.795 | 448 | 172 | 9 | 1 | 416 | 1 | 445 | 1.37e-153 | 442 |
| MS.gene59384.t1 | AT2G47900 | 53.589 | 418 | 181 | 5 | 1 | 416 | 1 | 407 | 6.51e-152 | 436 |
| MS.gene59384.t1 | AT2G47900 | 53.717 | 417 | 181 | 5 | 1 | 416 | 1 | 406 | 1.22e-151 | 436 |
| MS.gene59384.t1 | AT2G47900 | 53.717 | 417 | 181 | 5 | 1 | 416 | 1 | 406 | 1.22e-151 | 436 |
| MS.gene59384.t1 | AT1G76900 | 50.866 | 462 | 174 | 9 | 1 | 416 | 1 | 455 | 3.39e-145 | 421 |
| MS.gene59384.t1 | AT1G76900 | 50.866 | 462 | 174 | 9 | 1 | 416 | 1 | 455 | 3.39e-145 | 421 |
| MS.gene59384.t1 | AT1G76900 | 50.866 | 462 | 174 | 9 | 1 | 416 | 1 | 455 | 3.39e-145 | 421 |
| MS.gene59384.t1 | AT1G43640 | 50.000 | 442 | 182 | 12 | 1 | 416 | 1 | 429 | 1.45e-142 | 413 |
| MS.gene59384.t1 | AT5G18680 | 53.887 | 373 | 147 | 7 | 51 | 416 | 35 | 389 | 2.47e-130 | 380 |
| MS.gene59384.t1 | AT1G43640 | 52.151 | 372 | 147 | 9 | 67 | 416 | 1 | 363 | 1.77e-128 | 375 |
| MS.gene59384.t1 | AT3G06380 | 51.671 | 389 | 168 | 7 | 31 | 416 | 9 | 380 | 3.91e-128 | 375 |
| MS.gene59384.t1 | AT1G53320 | 51.934 | 362 | 148 | 3 | 55 | 416 | 44 | 379 | 1.54e-124 | 365 |
| MS.gene59384.t1 | AT5G18680 | 54.369 | 309 | 117 | 6 | 114 | 416 | 7 | 297 | 1.64e-105 | 314 |
| MS.gene59384.t1 | AT3G06380 | 54.153 | 301 | 119 | 6 | 118 | 416 | 5 | 288 | 2.03e-101 | 303 |
| MS.gene59384.t1 | AT1G25280 | 56.180 | 267 | 93 | 6 | 174 | 416 | 1 | 267 | 1.01e-94 | 285 |
| MS.gene59384.t1 | AT1G25280 | 56.180 | 267 | 93 | 6 | 174 | 416 | 1 | 267 | 1.01e-94 | 285 |
| MS.gene59384.t1 | AT1G61940 | 50.575 | 87 | 43 | 0 | 58 | 144 | 1 | 87 | 4.16e-26 | 106 |
| MS.gene59384.t1 | AT1G61940 | 54.098 | 61 | 28 | 0 | 58 | 118 | 1 | 61 | 5.97e-16 | 77.4 |
Find 110 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTGCTGGACCGGCTATT+TGG | 0.209525 | 5.4:+12525720 | None:intergenic |
| CCAATTGGATCTTTACCTTT+TGG | 0.222216 | 5.4:+12525474 | None:intergenic |
| TAACACGGCCCTTGAAATTT+AGG | 0.254077 | 5.4:+12525337 | None:intergenic |
| CCAGCAGGAGATTTCATTCT+AGG | 0.267212 | 5.4:-12525707 | MS.gene59384:CDS |
| TGGAAAAGATATATTTACTA+TGG | 0.274718 | 5.4:-12525211 | MS.gene59384:CDS |
| CACAGACTTCATCATATCTT+TGG | 0.281729 | 5.4:-12525949 | MS.gene59384:CDS |
| ATCACCTGCTTTAACGAAAT+AGG | 0.313540 | 5.4:+12527245 | None:intergenic |
| TTGCAGCTGTTCATGCCATC+TGG | 0.337933 | 5.4:+12525368 | None:intergenic |
| ATCTTGCAGTTTGGAAAGAT+TGG | 0.342353 | 5.4:-12525231 | MS.gene59384:CDS |
| CGTCAATCTTCCACACTCTT+CGG | 0.347596 | 5.4:+12527271 | None:intergenic |
| TTCAACCCTCGCAGAGTTGC+CGG | 0.349688 | 5.4:-12525439 | MS.gene59384:CDS |
| GTCAATCTTCCACACTCTTC+GGG | 0.352453 | 5.4:+12527272 | None:intergenic |
| GAGAAGGTTATCTTGCAGTT+TGG | 0.354935 | 5.4:-12525240 | MS.gene59384:CDS |
| TATACCTGTCTCAGCTGTTC+AGG | 0.357164 | 5.4:-12525574 | MS.gene59384:CDS |
| TAGAAGAGACTGAGACTTCT+TGG | 0.372030 | 5.4:-12527373 | MS.gene59384:CDS |
| TCTGCATATCTATTGTACTA+TGG | 0.382229 | 5.4:-12527069 | MS.gene59384:CDS |
| ATGATGCAATTCATTCTTCT+CGG | 0.382856 | 5.4:+12525603 | None:intergenic |
| CCAAGGGCCATTTGAGTCTC+TGG | 0.405945 | 5.4:-12525409 | MS.gene59384:CDS |
| CTCCGATACAGTGCTTCATT+AGG | 0.408737 | 5.4:-12527107 | MS.gene59384:CDS |
| ATAACCTTCTCTTGCTCTGC+AGG | 0.415381 | 5.4:+12525252 | None:intergenic |
| ATGCTGGTGCCTAAATTTCA+AGG | 0.430024 | 5.4:-12525346 | MS.gene59384:CDS |
| TGAGGAAAAGATGTAGGAGT+TGG | 0.437219 | 5.4:+12525537 | None:intergenic |
| ACCTATTCAGCAGGGACAAT+GGG | 0.444059 | 5.4:-12527438 | MS.gene59384:CDS |
| AGTGATGTTAGAGTGATATC+AGG | 0.447610 | 5.4:+12527464 | None:intergenic |
| GAATTGCTTAAATCTCCAAT+TGG | 0.451744 | 5.4:+12525459 | None:intergenic |
| TGGAGGTTGGCTGTCATATA+TGG | 0.452519 | 5.4:+12525761 | None:intergenic |
| GCCCATTGTCCCTGCTGAAT+AGG | 0.468212 | 5.4:+12527437 | None:intergenic |
| CCAAAAGGTAAAGATCCAAT+TGG | 0.470093 | 5.4:-12525474 | MS.gene59384:CDS |
| ATCACTTGAACCTATTCAGC+AGG | 0.471218 | 5.4:-12527447 | MS.gene59384:CDS |
| TAGTTACACGCTGGAACTCT+TGG | 0.471948 | 5.4:+12525675 | None:intergenic |
| AGCCAACCTCCACACGGAGC+TGG | 0.473234 | 5.4:-12525750 | MS.gene59384:CDS |
| GGCATGAACAGCTGCAATGC+TGG | 0.474704 | 5.4:-12525362 | MS.gene59384:CDS |
| AATGAAATCTCCTGCTGGAC+CGG | 0.476146 | 5.4:+12525712 | None:intergenic |
| GCGGAGAACATTCAGCTCAT+AGG | 0.477645 | 5.4:+12525635 | None:intergenic |
| AACTCAAGGAGATGAGGGAT+GGG | 0.484739 | 5.4:-12527556 | MS.gene59384:CDS |
| CTGAATGTTCTCCGCACTAG+AGG | 0.484848 | 5.4:-12525627 | MS.gene59384:CDS |
| CGTTCCAGCAATGCGTATGT+TGG | 0.488866 | 5.4:-12525909 | MS.gene59384:CDS |
| AACCAAATAGCCGGTCCAGC+AGG | 0.493265 | 5.4:-12525722 | MS.gene59384:CDS |
| AATGGCCCTTGGCTCTGAAC+CGG | 0.498889 | 5.4:+12525420 | None:intergenic |
| GTAATTTGAGGAAAAGATGT+AGG | 0.503684 | 5.4:+12525531 | None:intergenic |
| GAACTCAAGGAGATGAGGGA+TGG | 0.505860 | 5.4:-12527557 | MS.gene59384:CDS |
| TGCAGCTGTTCATGCCATCT+GGG | 0.506117 | 5.4:+12525369 | None:intergenic |
| GTTTCCTATTTCGTTAAAGC+AGG | 0.506221 | 5.4:-12527249 | MS.gene59384:intron |
| AAATGTTCATCAGTAATTTG+AGG | 0.509198 | 5.4:+12525519 | None:intergenic |
| CCTTCCTGAACAGCTGAGAC+AGG | 0.514005 | 5.4:+12525570 | None:intergenic |
| CGATACAGTGCTTCATTAGG+AGG | 0.516701 | 5.4:-12527104 | MS.gene59384:CDS |
| TGTCATTGAGAAGCATAGTA+CGG | 0.516913 | 5.4:-12527580 | MS.gene59384:CDS |
| GAGTTGCCGGTTCAGAGCCA+AGG | 0.518280 | 5.4:-12525426 | MS.gene59384:CDS |
| CAGGAGATTTCATTCTAGGC+AGG | 0.528326 | 5.4:-12525703 | MS.gene59384:CDS |
| CATGGATCTCATTCACATGC+TGG | 0.528401 | 5.4:+12525123 | None:intergenic |
| TTGAGTACCAGAGACTCAAA+TGG | 0.530012 | 5.4:+12525402 | None:intergenic |
| AGTTAAGAACTTTCAACTTG+TGG | 0.534362 | 5.4:-12525304 | MS.gene59384:CDS |
| GAAACGACAACAGCACGTGC+AGG | 0.536741 | 5.4:+12527350 | None:intergenic |
| CCTAGAATGAAATCTCCTGC+TGG | 0.538624 | 5.4:+12525707 | None:intergenic |
| CCTGTCTCAGCTGTTCAGGA+AGG | 0.540458 | 5.4:-12525570 | MS.gene59384:CDS |
| CTGTCTCAGCTGTTCAGGAA+GGG | 0.541956 | 5.4:-12525569 | MS.gene59384:CDS |
| CGAGGAGAGGTGTGGCAAGT+AGG | 0.542255 | 5.4:-12527520 | MS.gene59384:CDS |
| CTCCTAATGAAGCACTGTAT+CGG | 0.542754 | 5.4:+12527105 | None:intergenic |
| GCATATCGCAAAGGCTTGGA+AGG | 0.543599 | 5.4:+12525167 | None:intergenic |
| GCTGTCATATATGGTGAACT+TGG | 0.544644 | 5.4:+12525770 | None:intergenic |
| GTCATTGAGAAGCATAGTAC+GGG | 0.549586 | 5.4:-12527579 | MS.gene59384:CDS |
| GTGCTTCTGTGTGTAAATCA+TGG | 0.549837 | 5.4:-12527325 | MS.gene59384:CDS |
| CCAGAGACTCAAATGGCCCT+TGG | 0.550663 | 5.4:+12525409 | None:intergenic |
| TTCCAGCTCCGTGTGGAGGT+TGG | 0.551308 | 5.4:+12525748 | None:intergenic |
| AACCTATTCAGCAGGGACAA+TGG | 0.551680 | 5.4:-12527439 | MS.gene59384:CDS |
| AAGCATAGTACGGGAACTCA+AGG | 0.555180 | 5.4:-12527570 | MS.gene59384:CDS |
| TCTGAACCGGCAACTCTGCG+AGG | 0.556736 | 5.4:+12525433 | None:intergenic |
| AAGGAGATGAGGGATGGGAT+TGG | 0.557067 | 5.4:-12527551 | MS.gene59384:CDS |
| TGCTACTTGATATAATTCGA+AGG | 0.558581 | 5.4:-12527397 | MS.gene59384:CDS |
| TGTCTCAGCTGTTCAGGAAG+GGG | 0.560697 | 5.4:-12525568 | MS.gene59384:CDS |
| ATCGGAGAATCACGAGGACC+CGG | 0.561657 | 5.4:+12527123 | None:intergenic |
| TTCTTCTCGGCCCTCTAGTG+CGG | 0.564773 | 5.4:+12525616 | None:intergenic |
| GTCTCAGCTGTTCAGGAAGG+GGG | 0.566290 | 5.4:-12525567 | MS.gene59384:CDS |
| CTGAACCGGCAACTCTGCGA+GGG | 0.569008 | 5.4:+12525434 | None:intergenic |
| ATATCTATTGTACTATGGAC+TGG | 0.572719 | 5.4:-12527064 | MS.gene59384:CDS |
| GCTACTTGATATAATTCGAA+GGG | 0.575810 | 5.4:-12527396 | MS.gene59384:CDS |
| GCGTCAGCACCAGAGCCAAA+AGG | 0.578551 | 5.4:-12525489 | MS.gene59384:CDS |
| TCAAGCATATCGCAAAGGCT+TGG | 0.579509 | 5.4:+12525163 | None:intergenic |
| AACATTCAGCTCATAGGCAA+TGG | 0.582469 | 5.4:+12525641 | None:intergenic |
| CTGGAATACAACCAAATAGC+CGG | 0.589720 | 5.4:-12525731 | MS.gene59384:CDS |
| TACGGGAACTCAAGGAGATG+AGG | 0.591073 | 5.4:-12527562 | MS.gene59384:CDS |
| CTGAACAATCTCTTGTGTAA+CGG | 0.594307 | 5.4:+12527298 | None:intergenic |
| ACGGGAACTCAAGGAGATGA+GGG | 0.594362 | 5.4:-12527561 | MS.gene59384:CDS |
| TTCTCCTGCAGAGCAAGAGA+AGG | 0.597006 | 5.4:-12525256 | MS.gene59384:CDS |
| ATGCGTATGTTGGAAAACTC+AGG | 0.602255 | 5.4:-12525899 | MS.gene59384:intron |
| AGTTGCCGGTTCAGAGCCAA+GGG | 0.602888 | 5.4:-12525425 | MS.gene59384:CDS |
| GCAGGAGAAACATTATGAGA+TGG | 0.604319 | 5.4:+12525270 | None:intergenic |
| CAAGTAGGCATTCACAGCGT+CGG | 0.608761 | 5.4:-12527505 | MS.gene59384:CDS |
| GGAAGGCAGAGAGTGGATAA+CGG | 0.610357 | 5.4:+12525184 | None:intergenic |
| GCTGCTCAAGCATATCGCAA+AGG | 0.610612 | 5.4:+12525158 | None:intergenic |
| TTTCAAGGGCCGTGTTACAG+TGG | 0.611483 | 5.4:-12525331 | MS.gene59384:CDS |
| TGAATGTTCTCCGCACTAGA+GGG | 0.618617 | 5.4:-12525626 | MS.gene59384:CDS |
| AAGGCTTGGAAGGCAGAGAG+TGG | 0.622272 | 5.4:+12525177 | None:intergenic |
| TTCTGTGTGTAAATCATGGA+GGG | 0.630242 | 5.4:-12527321 | MS.gene59384:CDS |
| AGATATGATGAAGTCTGTGC+CGG | 0.635175 | 5.4:+12525953 | None:intergenic |
| GTTCAGACTCCCGAAGAGTG+TGG | 0.642949 | 5.4:-12527281 | MS.gene59384:CDS |
| TGCTGGTGCCTAAATTTCAA+GGG | 0.642974 | 5.4:-12525345 | MS.gene59384:CDS |
| TAACTGAAGCCACTGTAACA+CGG | 0.643817 | 5.4:+12525322 | None:intergenic |
| TGTATTCCAGCTCCGTGTGG+AGG | 0.645160 | 5.4:+12525744 | None:intergenic |
| CTTCTGTGTGTAAATCATGG+AGG | 0.649209 | 5.4:-12527322 | MS.gene59384:CDS |
| ATTGGTAATACGTCGAGGAG+AGG | 0.649495 | 5.4:-12527533 | MS.gene59384:CDS |
| ATATCAAGTAGCAATTCAGA+TGG | 0.650336 | 5.4:+12527407 | None:intergenic |
| GGTTGTATTCCAGCTCCGTG+TGG | 0.669899 | 5.4:+12525741 | None:intergenic |
| CACTGTATCGGAGAATCACG+AGG | 0.670191 | 5.4:+12527117 | None:intergenic |
| GATACAGTGCTTCATTAGGA+GGG | 0.679251 | 5.4:-12527103 | MS.gene59384:CDS |
| TCACTTGAACCTATTCAGCA+GGG | 0.690245 | 5.4:-12527446 | MS.gene59384:CDS |
| TAATACGTCGAGGAGAGGTG+TGG | 0.694801 | 5.4:-12527528 | MS.gene59384:CDS |
| CTAACAATATAGTTACACGC+TGG | 0.696992 | 5.4:+12525666 | None:intergenic |
| ATGGGATTGGTAATACGTCG+AGG | 0.700501 | 5.4:-12527538 | MS.gene59384:CDS |
| TATGACAGCCAACCTCCACA+CGG | 0.700970 | 5.4:-12525756 | MS.gene59384:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTAATGCTAAATTTTA+GGG | - | chr5.4:12526148-12526167 | MS.gene59384:intron | 15.0% |
| !!! | TTATTGTAATGCTAAATTTT+AGG | - | chr5.4:12526147-12526166 | MS.gene59384:intron | 15.0% |
| !!! | TTTCATTTTTTTTTCTCAAA+GGG | - | chr5.4:12525723-12525742 | MS.gene59384:CDS | 15.0% |
| !!! | TTTTCATTTTTTTTTCTCAA+AGG | - | chr5.4:12525722-12525741 | MS.gene59384:CDS | 15.0% |
| !! | ACTTTCTCAAATTAATTACT+TGG | - | chr5.4:12525897-12525916 | MS.gene59384:intron | 20.0% |
| !! | TACCAATTTCAAAATCATTA+AGG | + | chr5.4:12526647-12526666 | None:intergenic | 20.0% |
| !! | TGGAAAAGATATATTTACTA+TGG | - | chr5.4:12527501-12527520 | MS.gene59384:CDS | 20.0% |
| !! | TTATGAATTTAGATCTTGAA+CGG | - | chr5.4:12525792-12525811 | MS.gene59384:intron | 20.0% |
| !! | TTTATTGCACTAAATATGTA+GGG | - | chr5.4:12525819-12525838 | MS.gene59384:intron | 20.0% |
| !!! | TTTAAAATCACCCAAATAAA+GGG | + | chr5.4:12526339-12526358 | None:intergenic | 20.0% |
| !!! | TTTAAGCAATTTTCAAGTAT+TGG | + | chr5.4:12526202-12526221 | None:intergenic | 20.0% |
| !!! | TTTTATTGCACTAAATATGT+AGG | - | chr5.4:12525818-12525837 | MS.gene59384:intron | 20.0% |
| ! | AAATGTTCATCAGTAATTTG+AGG | + | chr5.4:12527196-12527215 | None:intergenic | 25.0% |
| ! | AATCATTAAGGTGAATTGAA+CGG | + | chr5.4:12526635-12526654 | None:intergenic | 25.0% |
| ! | CAAGTAATTTCTTAACTATG+AGG | + | chr5.4:12526246-12526265 | None:intergenic | 25.0% |
| ! | TTAATTACACGTGCATTATT+TGG | - | chr5.4:12526060-12526079 | MS.gene59384:intron | 25.0% |
| !! | TCATTTGTTTCCCTTTATTT+GGG | - | chr5.4:12526326-12526345 | MS.gene59384:intron | 25.0% |
| !!! | AAATTTTAGGGCTAATTCTA+CGG | - | chr5.4:12526160-12526179 | MS.gene59384:intron | 25.0% |
| !!! | AACTGATGATAAATTTTGAC+AGG | - | chr5.4:12526903-12526922 | MS.gene59384:intron | 25.0% |
| !!! | ACTTTTTGTTTATGAATAGC+CGG | - | chr5.4:12525570-12525589 | MS.gene59384:CDS | 25.0% |
| !!! | CACCTTAATGATTTTGAAAT+TGG | - | chr5.4:12526642-12526661 | MS.gene59384:intron | 25.0% |
| !!! | CTTTAAAATCACCCAAATAA+AGG | + | chr5.4:12526340-12526359 | None:intergenic | 25.0% |
| !!! | TAGATGTTCTTTTTCATTGT+TGG | - | chr5.4:12526504-12526523 | MS.gene59384:intron | 25.0% |
| !!! | TTAATTCTTCACTCCTTTTT+TGG | - | chr5.4:12525489-12525508 | MS.gene59384:CDS | 25.0% |
| !!! | TTCTGTTTTTTCTTATACAG+CGG | - | chr5.4:12526685-12526704 | MS.gene59384:intron | 25.0% |
| !!! | TTGAATCACTTTTGAAAACT+TGG | - | chr5.4:12525766-12525785 | MS.gene59384:CDS | 25.0% |
| !!! | TTTTAACTTCTGACTTGAAT+GGG | - | chr5.4:12526553-12526572 | MS.gene59384:intron | 25.0% |
| !!! | TTTTTAACTTCTGACTTGAA+TGG | - | chr5.4:12526552-12526571 | MS.gene59384:intron | 25.0% |
| AACAACAATTACGCCAAAAA+AGG | + | chr5.4:12525505-12525524 | None:intergenic | 30.0% | |
| AAGATACAGAACAACCAAAA+TGG | + | chr5.4:12525541-12525560 | None:intergenic | 30.0% | |
| AGTTAAGAACTTTCAACTTG+TGG | - | chr5.4:12527408-12527427 | MS.gene59384:CDS | 30.0% | |
| ATATCAAGTAGCAATTCAGA+TGG | + | chr5.4:12525308-12525327 | None:intergenic | 30.0% | |
| ATATCTATTGTACTATGGAC+TGG | - | chr5.4:12525648-12525667 | MS.gene59384:CDS | 30.0% | |
| ATGATGCAATTCATTCTTCT+CGG | + | chr5.4:12527112-12527131 | None:intergenic | 30.0% | |
| CTCATTTGTTTCCCTTTATT+TGG | - | chr5.4:12526325-12526344 | MS.gene59384:intron | 30.0% | |
| GAATTGCTTAAATCTCCAAT+TGG | + | chr5.4:12527256-12527275 | None:intergenic | 30.0% | |
| GCTACTTGATATAATTCGAA+GGG | - | chr5.4:12525316-12525335 | MS.gene59384:CDS | 30.0% | |
| GTAATTTGAGGAAAAGATGT+AGG | + | chr5.4:12527184-12527203 | None:intergenic | 30.0% | |
| GTGTTGGAAATTTGAAAAGT+GGG | + | chr5.4:12526868-12526887 | None:intergenic | 30.0% | |
| TAGCAGATAAAATAGTGTGT+TGG | + | chr5.4:12526884-12526903 | None:intergenic | 30.0% | |
| TATTAGCTGCCAAAAAGATA+AGG | - | chr5.4:12526729-12526748 | MS.gene59384:intron | 30.0% | |
| TCTGCATATCTATTGTACTA+TGG | - | chr5.4:12525643-12525662 | MS.gene59384:CDS | 30.0% | |
| TGTGTTGGAAATTTGAAAAG+TGG | + | chr5.4:12526869-12526888 | None:intergenic | 30.0% | |
| TTGGAGTCATAGTATGAAAT+GGG | - | chr5.4:12526448-12526467 | MS.gene59384:intron | 30.0% | |
| ! | AAACTAGAAGTGCATTTCTT+TGG | - | chr5.4:12526429-12526448 | MS.gene59384:intron | 30.0% |
| ! | TGCTACTTGATATAATTCGA+AGG | - | chr5.4:12525315-12525334 | MS.gene59384:CDS | 30.0% |
| ! | TTTGACAGGTCTAACTTTTT+GGG | - | chr5.4:12526917-12526936 | MS.gene59384:intron | 30.0% |
| ! | TTTGGAGTCATAGTATGAAA+TGG | - | chr5.4:12526447-12526466 | MS.gene59384:intron | 30.0% |
| ! | TTTTGACAGGTCTAACTTTT+TGG | - | chr5.4:12526916-12526935 | MS.gene59384:intron | 30.0% |
| !! | CTTTTTGTTTATGAATAGCC+GGG | - | chr5.4:12525571-12525590 | MS.gene59384:CDS | 30.0% |
| !! | GATGTTGATTCGACAAAAAA+GGG | - | chr5.4:12526269-12526288 | MS.gene59384:intron | 30.0% |
| AGTGATGTTAGAGTGATATC+AGG | + | chr5.4:12525251-12525270 | None:intergenic | 35.0% | |
| ATCACCTGCTTTAACGAAAT+AGG | + | chr5.4:12525470-12525489 | None:intergenic | 35.0% | |
| ATCTTGCAGTTTGGAAAGAT+TGG | - | chr5.4:12527481-12527500 | MS.gene59384:CDS | 35.0% | |
| CACAGACTTCATCATATCTT+TGG | - | chr5.4:12526763-12526782 | MS.gene59384:intron | 35.0% | |
| CACATTGAAGCAAACTTACA+TGG | + | chr5.4:12525676-12525695 | None:intergenic | 35.0% | |
| CCAAAAGGTAAAGATCCAAT+TGG | - | chr5.4:12527238-12527257 | MS.gene59384:intron | 35.0% | |
| CTAACAATATAGTTACACGC+TGG | + | chr5.4:12527049-12527068 | None:intergenic | 35.0% | |
| CTGAACAATCTCTTGTGTAA+CGG | + | chr5.4:12525417-12525436 | None:intergenic | 35.0% | |
| GAGGAAAACAAAGCACAAAT+CGG | + | chr5.4:12526613-12526632 | None:intergenic | 35.0% | |
| GTTTCCTATTTCGTTAAAGC+AGG | - | chr5.4:12525463-12525482 | MS.gene59384:CDS | 35.0% | |
| TGATTCGACAAAAAAGGGAA+GGG | - | chr5.4:12526274-12526293 | MS.gene59384:intron | 35.0% | |
| TTCTGTGTGTAAATCATGGA+GGG | - | chr5.4:12525391-12525410 | MS.gene59384:CDS | 35.0% | |
| ! | CATGTAAGTTTGCTTCAATG+TGG | - | chr5.4:12525674-12525693 | MS.gene59384:CDS | 35.0% |
| ! | CCAATTGGATCTTTACCTTT+TGG | + | chr5.4:12527241-12527260 | None:intergenic | 35.0% |
| ! | GAAACAAATGAGTTGAGTTG+AGG | + | chr5.4:12526317-12526336 | None:intergenic | 35.0% |
| ! | TGGAAAACTCAGGTAAGTTT+TGG | - | chr5.4:12526823-12526842 | MS.gene59384:intron | 35.0% |
| ! | TGTCATTGAGAAGCATAGTA+CGG | - | chr5.4:12525132-12525151 | MS.gene59384:CDS | 35.0% |
| ! | TTGATTCGACAAAAAAGGGA+AGG | - | chr5.4:12526273-12526292 | MS.gene59384:intron | 35.0% |
| ! | TTTTCGCTGCTTATCCATTT+TGG | - | chr5.4:12525524-12525543 | MS.gene59384:CDS | 35.0% |
| !! | CGATGTTGATTCGACAAAAA+AGG | - | chr5.4:12526268-12526287 | MS.gene59384:intron | 35.0% |
| !! | TTTCAAGTATTGGTCTGATG+CGG | + | chr5.4:12526192-12526211 | None:intergenic | 35.0% |
| !!! | TTTGGGTGATTTTAAAGTGC+CGG | - | chr5.4:12526343-12526362 | MS.gene59384:intron | 35.0% |
| AAAAAGATAAGGAGGGCAAC+CGG | - | chr5.4:12526740-12526759 | MS.gene59384:intron | 40.0% | |
| AACAAAGCACAAATCGGTTG+AGG | + | chr5.4:12526607-12526626 | None:intergenic | 40.0% | |
| AACATTCAGCTCATAGGCAA+TGG | + | chr5.4:12527074-12527093 | None:intergenic | 40.0% | |
| AGATATGATGAAGTCTGTGC+CGG | + | chr5.4:12526762-12526781 | None:intergenic | 40.0% | |
| AGCTGCCAAAAAGATAAGGA+GGG | - | chr5.4:12526733-12526752 | MS.gene59384:intron | 40.0% | |
| ATCACTTGAACCTATTCAGC+AGG | - | chr5.4:12525265-12525284 | MS.gene59384:CDS | 40.0% | |
| ATGCGTATGTTGGAAAACTC+AGG | - | chr5.4:12526813-12526832 | MS.gene59384:intron | 40.0% | |
| ATGCTGGTGCCTAAATTTCA+AGG | - | chr5.4:12527366-12527385 | MS.gene59384:CDS | 40.0% | |
| CATTAAGGTGAATTGAACGG+AGG | + | chr5.4:12526632-12526651 | None:intergenic | 40.0% | |
| CTGGAATACAACCAAATAGC+CGG | - | chr5.4:12526981-12527000 | MS.gene59384:intron | 40.0% | |
| CTTCTGTGTGTAAATCATGG+AGG | - | chr5.4:12525390-12525409 | MS.gene59384:CDS | 40.0% | |
| GACTTGAATGGGACAGAAAT+TGG | - | chr5.4:12526564-12526583 | MS.gene59384:intron | 40.0% | |
| GAGAAGGTTATCTTGCAGTT+TGG | - | chr5.4:12527472-12527491 | MS.gene59384:CDS | 40.0% | |
| GATACAGTGCTTCATTAGGA+GGG | - | chr5.4:12525609-12525628 | MS.gene59384:CDS | 40.0% | |
| GCAGGAGAAACATTATGAGA+TGG | + | chr5.4:12527445-12527464 | None:intergenic | 40.0% | |
| GCTGTCATATATGGTGAACT+TGG | + | chr5.4:12526945-12526964 | None:intergenic | 40.0% | |
| GTGCTTCTGTGTGTAAATCA+TGG | - | chr5.4:12525387-12525406 | MS.gene59384:CDS | 40.0% | |
| GTTCGAACATGTGCATTACA+TGG | - | chr5.4:12525921-12525940 | MS.gene59384:CDS | 40.0% | |
| TAACACGGCCCTTGAAATTT+AGG | + | chr5.4:12527378-12527397 | None:intergenic | 40.0% | |
| TAACTGAAGCCACTGTAACA+CGG | + | chr5.4:12527393-12527412 | None:intergenic | 40.0% | |
| TAGAAGAGACTGAGACTTCT+TGG | - | chr5.4:12525339-12525358 | MS.gene59384:CDS | 40.0% | |
| TAGCTGCCAAAAAGATAAGG+AGG | - | chr5.4:12526732-12526751 | MS.gene59384:intron | 40.0% | |
| TCAAAAACAAGTCTCCCAGA+TGG | - | chr5.4:12527329-12527348 | MS.gene59384:CDS | 40.0% | |
| TCACTTGAACCTATTCAGCA+GGG | - | chr5.4:12525266-12525285 | MS.gene59384:CDS | 40.0% | |
| TGAGGAAAAGATGTAGGAGT+TGG | + | chr5.4:12527178-12527197 | None:intergenic | 40.0% | |
| TGCTGGTGCCTAAATTTCAA+GGG | - | chr5.4:12527367-12527386 | MS.gene59384:CDS | 40.0% | |
| TTGAGTACCAGAGACTCAAA+TGG | + | chr5.4:12527313-12527332 | None:intergenic | 40.0% | |
| ! | GTCATTGAGAAGCATAGTAC+GGG | - | chr5.4:12525133-12525152 | MS.gene59384:CDS | 40.0% |
| ! | TTTTCCAACATACGCATTGC+TGG | + | chr5.4:12526810-12526829 | None:intergenic | 40.0% |
| !! | CTCCTAATGAAGCACTGTAT+CGG | + | chr5.4:12525610-12525629 | None:intergenic | 40.0% |
| AACCTATTCAGCAGGGACAA+TGG | - | chr5.4:12525273-12525292 | MS.gene59384:CDS | 45.0% | |
| AACTCAAGGAGATGAGGGAT+GGG | - | chr5.4:12525156-12525175 | MS.gene59384:CDS | 45.0% | |
| AAGCATAGTACGGGAACTCA+AGG | - | chr5.4:12525142-12525161 | MS.gene59384:CDS | 45.0% | |
| AATGAAATCTCCTGCTGGAC+CGG | + | chr5.4:12527003-12527022 | None:intergenic | 45.0% | |
| ACAGAAATTGGCTGAACCTG+TGG | - | chr5.4:12526576-12526595 | MS.gene59384:intron | 45.0% | |
| ACCTATTCAGCAGGGACAAT+GGG | - | chr5.4:12525274-12525293 | MS.gene59384:CDS | 45.0% | |
| ATAACCTTCTCTTGCTCTGC+AGG | + | chr5.4:12527463-12527482 | None:intergenic | 45.0% | |
| CAGGAGATTTCATTCTAGGC+AGG | - | chr5.4:12527009-12527028 | MS.gene59384:intron | 45.0% | |
| CCAGCAGGAGATTTCATTCT+AGG | - | chr5.4:12527005-12527024 | MS.gene59384:intron | 45.0% | |
| CCTAGAATGAAATCTCCTGC+TGG | + | chr5.4:12527008-12527027 | None:intergenic | 45.0% | |
| CGATACAGTGCTTCATTAGG+AGG | - | chr5.4:12525608-12525627 | MS.gene59384:CDS | 45.0% | |
| CGTCAATCTTCCACACTCTT+CGG | + | chr5.4:12525444-12525463 | None:intergenic | 45.0% | |
| CTAAAATCCGACAGCCTCTA+GGG | + | chr5.4:12526373-12526392 | None:intergenic | 45.0% | |
| CTCCGATACAGTGCTTCATT+AGG | - | chr5.4:12525605-12525624 | MS.gene59384:CDS | 45.0% | |
| GTCAATCTTCCACACTCTTC+GGG | + | chr5.4:12525443-12525462 | None:intergenic | 45.0% | |
| TAGTTACACGCTGGAACTCT+TGG | + | chr5.4:12527040-12527059 | None:intergenic | 45.0% | |
| TATACCTGTCTCAGCTGTTC+AGG | - | chr5.4:12527138-12527157 | MS.gene59384:intron | 45.0% | |
| TCAAGCATATCGCAAAGGCT+TGG | + | chr5.4:12527552-12527571 | None:intergenic | 45.0% | |
| TGAATGTTCTCCGCACTAGA+GGG | - | chr5.4:12527086-12527105 | MS.gene59384:CDS | 45.0% | |
| TTCGACAAAAAAGGGAAGGG+AGG | - | chr5.4:12526277-12526296 | MS.gene59384:intron | 45.0% | |
| ! | ATGGGATTGGTAATACGTCG+AGG | - | chr5.4:12525174-12525193 | MS.gene59384:CDS | 45.0% |
| ! | ATTGGTAATACGTCGAGGAG+AGG | - | chr5.4:12525179-12525198 | MS.gene59384:CDS | 45.0% |
| ! | GGTTGCCCTCCTTATCTTTT+TGG | + | chr5.4:12526741-12526760 | None:intergenic | 45.0% |
| ! | TCTAAAATCCGACAGCCTCT+AGG | + | chr5.4:12526374-12526393 | None:intergenic | 45.0% |
| ! | TGGAGGTTGGCTGTCATATA+TGG | + | chr5.4:12526954-12526973 | None:intergenic | 45.0% |
| !!! | GGATCTTTACCTTTTGGCTC+TGG | + | chr5.4:12527235-12527254 | None:intergenic | 45.0% |
| AAGGAGATGAGGGATGGGAT+TGG | - | chr5.4:12525161-12525180 | MS.gene59384:CDS | 50.0% | |
| ACAAAAAAGGGAAGGGAGGC+GGG | - | chr5.4:12526281-12526300 | MS.gene59384:intron | 50.0% | |
| ACGGGAACTCAAGGAGATGA+GGG | - | chr5.4:12525151-12525170 | MS.gene59384:CDS | 50.0% | |
| ATCGGTTGAGGTGTATCCAC+AGG | + | chr5.4:12526595-12526614 | None:intergenic | 50.0% | |
| CAAGTAGGCATTCACAGCGT+CGG | - | chr5.4:12525207-12525226 | MS.gene59384:CDS | 50.0% | |
| CACTGTATCGGAGAATCACG+AGG | + | chr5.4:12525598-12525617 | None:intergenic | 50.0% | |
| CGTTCCAGCAATGCGTATGT+TGG | - | chr5.4:12526803-12526822 | MS.gene59384:intron | 50.0% | |
| CTGAATGTTCTCCGCACTAG+AGG | - | chr5.4:12527085-12527104 | MS.gene59384:CDS | 50.0% | |
| CTGTCTCAGCTGTTCAGGAA+GGG | - | chr5.4:12527143-12527162 | MS.gene59384:intron | 50.0% | |
| GAACTCAAGGAGATGAGGGA+TGG | - | chr5.4:12525155-12525174 | MS.gene59384:CDS | 50.0% | |
| GACAAAAAAGGGAAGGGAGG+CGG | - | chr5.4:12526280-12526299 | MS.gene59384:intron | 50.0% | |
| GCATATCGCAAAGGCTTGGA+AGG | + | chr5.4:12527548-12527567 | None:intergenic | 50.0% | |
| GCGGAGAACATTCAGCTCAT+AGG | + | chr5.4:12527080-12527099 | None:intergenic | 50.0% | |
| GCTGCTCAAGCATATCGCAA+AGG | + | chr5.4:12527557-12527576 | None:intergenic | 50.0% | |
| GGAAGGCAGAGAGTGGATAA+CGG | + | chr5.4:12527531-12527550 | None:intergenic | 50.0% | |
| TAATACGTCGAGGAGAGGTG+TGG | - | chr5.4:12525184-12525203 | MS.gene59384:CDS | 50.0% | |
| TACGGGAACTCAAGGAGATG+AGG | - | chr5.4:12525150-12525169 | MS.gene59384:CDS | 50.0% | |
| TATGACAGCCAACCTCCACA+CGG | - | chr5.4:12526956-12526975 | MS.gene59384:intron | 50.0% | |
| TGCAGCTGTTCATGCCATCT+GGG | + | chr5.4:12527346-12527365 | None:intergenic | 50.0% | |
| TGTCTCAGCTGTTCAGGAAG+GGG | - | chr5.4:12527144-12527163 | MS.gene59384:intron | 50.0% | |
| TTCTCCTGCAGAGCAAGAGA+AGG | - | chr5.4:12527456-12527475 | MS.gene59384:CDS | 50.0% | |
| TTGCAGCTGTTCATGCCATC+TGG | + | chr5.4:12527347-12527366 | None:intergenic | 50.0% | |
| TTTCAAGGGCCGTGTTACAG+TGG | - | chr5.4:12527381-12527400 | MS.gene59384:CDS | 50.0% | |
| AACCAAATAGCCGGTCCAGC+AGG | - | chr5.4:12526990-12527009 | MS.gene59384:intron | 55.0% | |
| AAGGCTTGGAAGGCAGAGAG+TGG | + | chr5.4:12527538-12527557 | None:intergenic | 55.0% | |
| ATCGGAGAATCACGAGGACC+CGG | + | chr5.4:12525592-12525611 | None:intergenic | 55.0% | |
| CCAAGGGCCATTTGAGTCTC+TGG | - | chr5.4:12527303-12527322 | MS.gene59384:CDS | 55.0% | |
| CCAGAGACTCAAATGGCCCT+TGG | + | chr5.4:12527306-12527325 | None:intergenic | 55.0% | |
| CCTGTCTCAGCTGTTCAGGA+AGG | - | chr5.4:12527142-12527161 | MS.gene59384:intron | 55.0% | |
| CCTTCCTGAACAGCTGAGAC+AGG | + | chr5.4:12527145-12527164 | None:intergenic | 55.0% | |
| GAAACGACAACAGCACGTGC+AGG | + | chr5.4:12525365-12525384 | None:intergenic | 55.0% | |
| GCCCATTGTCCCTGCTGAAT+AGG | + | chr5.4:12525278-12525297 | None:intergenic | 55.0% | |
| GGCATGAACAGCTGCAATGC+TGG | - | chr5.4:12527350-12527369 | MS.gene59384:CDS | 55.0% | |
| GGTTGTATTCCAGCTCCGTG+TGG | + | chr5.4:12526974-12526993 | None:intergenic | 55.0% | |
| GTCTCAGCTGTTCAGGAAGG+GGG | - | chr5.4:12527145-12527164 | MS.gene59384:intron | 55.0% | |
| GTTCAGACTCCCGAAGAGTG+TGG | - | chr5.4:12525431-12525450 | MS.gene59384:CDS | 55.0% | |
| TGTATTCCAGCTCCGTGTGG+AGG | + | chr5.4:12526971-12526990 | None:intergenic | 55.0% | |
| TTCAACCCTCGCAGAGTTGC+CGG | - | chr5.4:12527273-12527292 | MS.gene59384:CDS | 55.0% | |
| TTCTTCTCGGCCCTCTAGTG+CGG | + | chr5.4:12527099-12527118 | None:intergenic | 55.0% | |
| !! | AAAGTGCCGGTTCACCCTAG+AGG | - | chr5.4:12526356-12526375 | MS.gene59384:intron | 55.0% |
| !! | AATGGCCCTTGGCTCTGAAC+CGG | + | chr5.4:12527295-12527314 | None:intergenic | 55.0% |
| !! | AGTTGCCGGTTCAGAGCCAA+GGG | - | chr5.4:12527287-12527306 | MS.gene59384:CDS | 55.0% |
| CGGTTCACCCTAGAGGCTGT+CGG | - | chr5.4:12526363-12526382 | MS.gene59384:intron | 60.0% | |
| CTCCTGCTGGACCGGCTATT+TGG | + | chr5.4:12526995-12527014 | None:intergenic | 60.0% | |
| CTGAACCGGCAACTCTGCGA+GGG | + | chr5.4:12527281-12527300 | None:intergenic | 60.0% | |
| GCGTCAGCACCAGAGCCAAA+AGG | - | chr5.4:12527223-12527242 | MS.gene59384:intron | 60.0% | |
| TCTGAACCGGCAACTCTGCG+AGG | + | chr5.4:12527282-12527301 | None:intergenic | 60.0% | |
| TTCCAGCTCCGTGTGGAGGT+TGG | + | chr5.4:12526967-12526986 | None:intergenic | 60.0% | |
| ! | CGAGGAGAGGTGTGGCAAGT+AGG | - | chr5.4:12525192-12525211 | MS.gene59384:CDS | 60.0% |
| !! | CGACAGCCTCTAGGGTGAAC+CGG | + | chr5.4:12526365-12526384 | None:intergenic | 60.0% |
| !! | GAGTTGCCGGTTCAGAGCCA+AGG | - | chr5.4:12527286-12527305 | MS.gene59384:CDS | 60.0% |
| AGCCAACCTCCACACGGAGC+TGG | - | chr5.4:12526962-12526981 | MS.gene59384:intron | 65.0% | |
| AGGGAAGGGAGGCGGGAGTA+TGG | - | chr5.4:12526288-12526307 | MS.gene59384:intron | 65.0% | |
| ! | GGGAAGGGAGGCGGGAGTAT+GGG | - | chr5.4:12526289-12526308 | MS.gene59384:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12525131 | 12527603 | 12525131 | ID=MS.gene59384 |
| chr5.4 | mRNA | 12525131 | 12527603 | 12525131 | ID=MS.gene59384.t1;Parent=MS.gene59384 |
| chr5.4 | exon | 12527250 | 12527603 | 12527250 | ID=MS.gene59384.t1.exon1;Parent=MS.gene59384.t1 |
| chr5.4 | CDS | 12527250 | 12527603 | 12527250 | ID=cds.MS.gene59384.t1;Parent=MS.gene59384.t1 |
| chr5.4 | exon | 12527058 | 12527145 | 12527058 | ID=MS.gene59384.t1.exon2;Parent=MS.gene59384.t1 |
| chr5.4 | CDS | 12527058 | 12527145 | 12527058 | ID=cds.MS.gene59384.t1;Parent=MS.gene59384.t1 |
| chr5.4 | exon | 12525900 | 12526029 | 12525900 | ID=MS.gene59384.t1.exon3;Parent=MS.gene59384.t1 |
| chr5.4 | CDS | 12525900 | 12526029 | 12525900 | ID=cds.MS.gene59384.t1;Parent=MS.gene59384.t1 |
| chr5.4 | exon | 12525131 | 12525809 | 12525131 | ID=MS.gene59384.t1.exon4;Parent=MS.gene59384.t1 |
| chr5.4 | CDS | 12525131 | 12525809 | 12525131 | ID=cds.MS.gene59384.t1;Parent=MS.gene59384.t1 |
| Gene Sequence |
| Protein sequence |
