Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24561.t1 | XP_003589004.1 | 79.9 | 229 | 46 | 0 | 1 | 229 | 1 | 229 | 9.60E-58 | 233.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24561.t1 | G7I9Z4 | 79.9 | 229 | 46 | 0 | 1 | 229 | 1 | 229 | 6.9e-58 | 233.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04915 | MS.gene24561 | 0.802998 | 4.30E-49 | -1.69E-46 |
MS.gene050277 | MS.gene24561 | 0.803573 | 3.27E-49 | -1.69E-46 |
MS.gene050317 | MS.gene24561 | 0.812382 | 4.36E-51 | -1.69E-46 |
MS.gene050838 | MS.gene24561 | 0.809593 | 1.75E-50 | -1.69E-46 |
MS.gene051003 | MS.gene24561 | 0.800329 | 1.52E-48 | -1.69E-46 |
MS.gene051245 | MS.gene24561 | 0.819113 | 1.38E-52 | -1.69E-46 |
MS.gene051746 | MS.gene24561 | 0.850594 | 1.53E-60 | -1.69E-46 |
MS.gene051748 | MS.gene24561 | 0.841576 | 4.37E-58 | -1.69E-46 |
MS.gene051903 | MS.gene24561 | 0.802467 | 5.53E-49 | -1.69E-46 |
MS.gene052434 | MS.gene24561 | 0.818531 | 1.87E-52 | -1.69E-46 |
MS.gene053109 | MS.gene24561 | 0.809683 | 1.68E-50 | -1.69E-46 |
MS.gene053381 | MS.gene24561 | 0.839791 | 1.28E-57 | -1.69E-46 |
MS.gene05344 | MS.gene24561 | -0.806388 | 8.43E-50 | -1.69E-46 |
MS.gene056432 | MS.gene24561 | 0.810267 | 1.25E-50 | -1.69E-46 |
MS.gene057057 | MS.gene24561 | 0.845689 | 3.47E-59 | -1.69E-46 |
MS.gene057094 | MS.gene24561 | 0.804641 | 1.96E-49 | -1.69E-46 |
MS.gene057234 | MS.gene24561 | 0.812088 | 5.06E-51 | -1.69E-46 |
MS.gene058654 | MS.gene24561 | 0.810576 | 1.08E-50 | -1.69E-46 |
MS.gene058906 | MS.gene24561 | 0.800033 | 1.74E-48 | -1.69E-46 |
MS.gene059898 | MS.gene24561 | 0.834039 | 3.77E-56 | -1.69E-46 |
MS.gene06011 | MS.gene24561 | 0.836013 | 1.20E-56 | -1.69E-46 |
MS.gene060465 | MS.gene24561 | 0.80203 | 6.81E-49 | -1.69E-46 |
MS.gene060702 | MS.gene24561 | 0.825342 | 4.94E-54 | -1.69E-46 |
MS.gene060763 | MS.gene24561 | 0.833854 | 4.20E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24561.t1 | MTR_1g016270 | 92.391 | 276 | 21 | 0 | 1 | 276 | 1 | 276 | 2.70e-148 | 416 |
MS.gene24561.t1 | MTR_8g097140 | 48.188 | 276 | 91 | 10 | 4 | 271 | 3 | 234 | 1.60e-51 | 169 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24561.t1 | AT5G60030 | 59.322 | 59 | 24 | 0 | 1 | 59 | 1 | 59 | 5.64e-17 | 79.0 |
MS.gene24561.t1 | AT1G75335 | 59.322 | 59 | 24 | 0 | 1 | 59 | 1 | 59 | 9.39e-16 | 71.6 |
Find 64 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAAAGAAGAAACTAGAATT+TGG | 0.282317 | 1.2:-6231347 | MS.gene24561:CDS |
AAGAAGGAGAAGAGTGTAGA+AGG | 0.312453 | 1.2:-6231233 | MS.gene24561:CDS |
AAGAAGAATGGAAGTGAGTT+AGG | 0.374907 | 1.2:-6231314 | MS.gene24561:CDS |
TGAAAAGGAGAAGAATTTAG+AGG | 0.379641 | 1.2:-6231126 | MS.gene24561:CDS |
GTTGTCAGCAGAGACAAATT+TGG | 0.400587 | 1.2:+6231604 | None:intergenic |
ATTCTCGGGATGTAGAAATT+AGG | 0.415570 | 1.2:-6231016 | MS.gene24561:CDS |
AGAAGGAGAAGAGTGTAGAA+GGG | 0.423276 | 1.2:-6231232 | MS.gene24561:CDS |
GAAGACACGGAAGAGAGATC+TGG | 0.440783 | 1.2:-6230909 | MS.gene24561:CDS |
GTGGAGGGCTAGTTGATTCT+CGG | 0.450550 | 1.2:-6231031 | MS.gene24561:CDS |
AAGGAGAAGAATTTAGAGGT+TGG | 0.455722 | 1.2:-6231122 | MS.gene24561:CDS |
TTAAACCGGCGCAGTCTCAT+AGG | 0.455996 | 1.2:-6231502 | MS.gene24561:CDS |
TGAGCTTAATCAACTTCATA+AGG | 0.457180 | 1.2:-6231528 | MS.gene24561:CDS |
AGTCTAAGAAGAAAATGAAA+AGG | 0.460042 | 1.2:-6230881 | MS.gene24561:CDS |
ATGTGAAGGTTGAAAGTAAA+GGG | 0.462456 | 1.2:-6231205 | MS.gene24561:CDS |
GGAGAGAGTGTAAAGAAGAA+TGG | 0.469789 | 1.2:-6231326 | MS.gene24561:CDS |
CTCCTCAGGAGTTAGAAATT+AGG | 0.475036 | 1.2:-6231175 | MS.gene24561:CDS |
GAGAAGCGTGATAAGAAAGA+TGG | 0.475565 | 1.2:-6231368 | MS.gene24561:CDS |
AAATGAAGTGGGGAGTGAAA+AGG | 0.480460 | 1.2:-6231141 | MS.gene24561:CDS |
AACAGATGATAGTGGTAGAT+TGG | 0.498404 | 1.2:-6231459 | MS.gene24561:CDS |
TGGAGGGCTAGTTGATTCTC+GGG | 0.502825 | 1.2:-6231030 | MS.gene24561:CDS |
AAGACACGGAAGAGAGATCT+GGG | 0.505868 | 1.2:-6230908 | MS.gene24561:CDS |
ACTTCATAAGGAGCTTAAAC+CGG | 0.507615 | 1.2:-6231516 | MS.gene24561:CDS |
GAATGGAAGTGAGTTAGGTC+AGG | 0.510402 | 1.2:-6231309 | MS.gene24561:CDS |
GAAGTTGTTGGTTCTGTCGT+GGG | 0.512214 | 1.2:-6231398 | MS.gene24561:CDS |
GAAGGAGAAGAGTGTAGAAG+GGG | 0.517307 | 1.2:-6231231 | MS.gene24561:CDS |
CGAGAAGAAGAACAAGAAGA+AGG | 0.521154 | 1.2:-6231249 | MS.gene24561:CDS |
TAAAGGGATAGTTCCTCCTC+AGG | 0.521560 | 1.2:-6231189 | MS.gene24561:CDS |
TTTAGAGGTTGGAAATGTGA+AGG | 0.536582 | 1.2:-6231111 | MS.gene24561:CDS |
TGAAGTTGTTGGTTCTGTCG+TGG | 0.542751 | 1.2:-6231399 | MS.gene24561:CDS |
AATGTGAAGGTTGAAAGTAA+AGG | 0.544852 | 1.2:-6231206 | MS.gene24561:CDS |
AGACGGAGCAAAGGAAGAAG+AGG | 0.546821 | 1.2:-6230938 | MS.gene24561:CDS |
CATTGAAAGCCGTGGATGCA+CGG | 0.548708 | 1.2:+6231549 | None:intergenic |
AAGAGGGAAAGACGGAGCAA+AGG | 0.550638 | 1.2:-6230947 | MS.gene24561:CDS |
AAACCTGGTCGTGAAGTTGT+TGG | 0.551304 | 1.2:-6231410 | MS.gene24561:CDS |
GAGTTAGGTCAGGACGATGA+AGG | 0.567638 | 1.2:-6231299 | MS.gene24561:CDS |
GAGTAAATTACATGCTGAAG+AGG | 0.574245 | 1.2:-6230964 | MS.gene24561:CDS |
AATGGTGTGAAGAGTGAAAG+TGG | 0.576054 | 1.2:-6231050 | MS.gene24561:CDS |
GGGACGAGAACAACAGAAAG+AGG | 0.576625 | 1.2:-6231090 | MS.gene24561:CDS |
TGTAGAAGGGGAGAATGTGA+AGG | 0.579317 | 1.2:-6231219 | MS.gene24561:CDS |
TTAGAGGTTGGAAATGTGAA+GGG | 0.581388 | 1.2:-6231110 | MS.gene24561:CDS |
GATTGGTCGAAAGTACTGTT+CGG | 0.581744 | 1.2:-6231442 | MS.gene24561:CDS |
TACCACTATCATCTGTTGCA+TGG | 0.584555 | 1.2:+6231465 | None:intergenic |
AGCCATGCAACAGATGATAG+TGG | 0.587057 | 1.2:-6231467 | MS.gene24561:CDS |
ATTAAGCTCATTGAAAGCCG+TGG | 0.591302 | 1.2:+6231541 | None:intergenic |
GACGATGAAGGAAGAACGGA+GGG | 0.595325 | 1.2:-6231287 | MS.gene24561:CDS |
TTATCTGCTCCGTGCATCCA+CGG | 0.595538 | 1.2:-6231558 | MS.gene24561:CDS |
AGTAAATTACATGCTGAAGA+GGG | 0.598011 | 1.2:-6230963 | MS.gene24561:CDS |
GACCTAATTTCTAACTCCTG+AGG | 0.598620 | 1.2:+6231173 | None:intergenic |
GAACCAACAACTTCACGACC+AGG | 0.602335 | 1.2:+6231407 | None:intergenic |
GTTCGGAGTGATGTTAAACC+TGG | 0.607851 | 1.2:-6231425 | MS.gene24561:CDS |
GTTGTTGGTTCTGTCGTGGG+TGG | 0.608189 | 1.2:-6231395 | MS.gene24561:CDS |
ACGAGAACAACAGAAAGAGG+TGG | 0.612657 | 1.2:-6231087 | MS.gene24561:CDS |
TCAGGACGATGAAGGAAGAA+CGG | 0.621358 | 1.2:-6231291 | MS.gene24561:CDS |
ACATGCTGAAGAGGGAAAGA+CGG | 0.635975 | 1.2:-6230955 | MS.gene24561:CDS |
TTCTTCCTATGAGACTGCGC+CGG | 0.636496 | 1.2:+6231497 | None:intergenic |
GAAGAGGAAGAATGAAGACA+CGG | 0.643138 | 1.2:-6230922 | MS.gene24561:CDS |
AAATTTGTCTCTGCTGACAA+CGG | 0.644626 | 1.2:-6231602 | MS.gene24561:CDS |
CTAATTTCTAACTCCTGAGG+AGG | 0.647828 | 1.2:+6231176 | None:intergenic |
GTGTGAAGAGTGAAAGTGGA+GGG | 0.650346 | 1.2:-6231046 | MS.gene24561:CDS |
GGACGATGAAGGAAGAACGG+AGG | 0.651421 | 1.2:-6231288 | MS.gene24561:CDS |
GAAAATGAAAAGGAAACACG+AGG | 0.691720 | 1.2:-6230871 | MS.gene24561:CDS |
AAAATGAAAAGGAAACACGA+GGG | 0.733622 | 1.2:-6230870 | MS.gene24561:CDS |
AGACACGGAAGAGAGATCTG+GGG | 0.742079 | 1.2:-6230907 | MS.gene24561:CDS |
GGTGTGAAGAGTGAAAGTGG+AGG | 0.804724 | 1.2:-6231047 | MS.gene24561:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AGTCTAAGAAGAAAATGAAA+AGG | - | chr1.2:6231659-6231678 | MS.gene24561:CDS | 25.0% |
AAAATGAAAAGGAAACACGA+GGG | - | chr1.2:6231670-6231689 | MS.gene24561:CDS | 30.0% | |
AATGTGAAGGTTGAAAGTAA+AGG | - | chr1.2:6231334-6231353 | MS.gene24561:CDS | 30.0% | |
AGTAAATTACATGCTGAAGA+GGG | - | chr1.2:6231577-6231596 | MS.gene24561:CDS | 30.0% | |
ATGTGAAGGTTGAAAGTAAA+GGG | - | chr1.2:6231335-6231354 | MS.gene24561:CDS | 30.0% | |
GGAAAGAAGAAACTAGAATT+TGG | - | chr1.2:6231193-6231212 | MS.gene24561:CDS | 30.0% | |
TCGAAAAAGAGAAATGAAGT+GGG | - | chr1.2:6231388-6231407 | MS.gene24561:CDS | 30.0% | |
TGAAAAGGAGAAGAATTTAG+AGG | - | chr1.2:6231414-6231433 | MS.gene24561:CDS | 30.0% | |
TGAGCTTAATCAACTTCATA+AGG | - | chr1.2:6231012-6231031 | MS.gene24561:CDS | 30.0% | |
AAATTTGTCTCTGCTGACAA+CGG | - | chr1.2:6230938-6230957 | MS.gene24561:CDS | 35.0% | |
AAGAAGAATGGAAGTGAGTT+AGG | - | chr1.2:6231226-6231245 | MS.gene24561:CDS | 35.0% | |
AAGGAGAAGAATTTAGAGGT+TGG | - | chr1.2:6231418-6231437 | MS.gene24561:CDS | 35.0% | |
ACTTCATAAGGAGCTTAAAC+CGG | - | chr1.2:6231024-6231043 | MS.gene24561:CDS | 35.0% | |
ATTCTCGGGATGTAGAAATT+AGG | - | chr1.2:6231524-6231543 | MS.gene24561:CDS | 35.0% | |
CGAAAAAGAGAAATGAAGTG+GGG | - | chr1.2:6231389-6231408 | MS.gene24561:CDS | 35.0% | |
GAAAATGAAAAGGAAACACG+AGG | - | chr1.2:6231669-6231688 | MS.gene24561:CDS | 35.0% | |
GAGTAAATTACATGCTGAAG+AGG | - | chr1.2:6231576-6231595 | MS.gene24561:CDS | 35.0% | |
GTCGAAAAAGAGAAATGAAG+TGG | - | chr1.2:6231387-6231406 | MS.gene24561:CDS | 35.0% | |
GTGGAGAAAAAACTAAGCAA+TGG | - | chr1.2:6231472-6231491 | MS.gene24561:CDS | 35.0% | |
TTAGAGGTTGGAAATGTGAA+GGG | - | chr1.2:6231430-6231449 | MS.gene24561:CDS | 35.0% | |
TTTAGAGGTTGGAAATGTGA+AGG | - | chr1.2:6231429-6231448 | MS.gene24561:CDS | 35.0% | |
! | CGAAAAAGAAGCATGAAACT+GGG | - | chr1.2:6231548-6231567 | MS.gene24561:CDS | 35.0% |
! | TCGAAAAAGAAGCATGAAAC+TGG | - | chr1.2:6231547-6231566 | MS.gene24561:CDS | 35.0% |
!! | AACAGATGATAGTGGTAGAT+TGG | - | chr1.2:6231081-6231100 | MS.gene24561:CDS | 35.0% |
AAATGAAGTGGGGAGTGAAA+AGG | - | chr1.2:6231399-6231418 | MS.gene24561:CDS | 40.0% | |
AATGGTGTGAAGAGTGAAAG+TGG | - | chr1.2:6231490-6231509 | MS.gene24561:CDS | 40.0% | |
ATTAAGCTCATTGAAAGCCG+TGG | + | chr1.2:6231002-6231021 | None:intergenic | 40.0% | |
CGAGAAGAAGAACAAGAAGA+AGG | - | chr1.2:6231291-6231310 | MS.gene24561:CDS | 40.0% | |
CTAATTTCTAACTCCTGAGG+AGG | + | chr1.2:6231367-6231386 | None:intergenic | 40.0% | |
CTCCTCAGGAGTTAGAAATT+AGG | - | chr1.2:6231365-6231384 | MS.gene24561:CDS | 40.0% | |
GAAGAGGAAGAATGAAGACA+CGG | - | chr1.2:6231618-6231637 | MS.gene24561:CDS | 40.0% | |
GACCTAATTTCTAACTCCTG+AGG | + | chr1.2:6231370-6231389 | None:intergenic | 40.0% | |
GTTGTCAGCAGAGACAAATT+TGG | + | chr1.2:6230939-6230958 | None:intergenic | 40.0% | |
TACCACTATCATCTGTTGCA+TGG | + | chr1.2:6231078-6231097 | None:intergenic | 40.0% | |
! | AAGAAGGAGAAGAGTGTAGA+AGG | - | chr1.2:6231307-6231326 | MS.gene24561:CDS | 40.0% |
! | AGAAGGAGAAGAGTGTAGAA+GGG | - | chr1.2:6231308-6231327 | MS.gene24561:CDS | 40.0% |
! | GAGAAGCGTGATAAGAAAGA+TGG | - | chr1.2:6231172-6231191 | MS.gene24561:CDS | 40.0% |
! | GGAGAGAGTGTAAAGAAGAA+TGG | - | chr1.2:6231214-6231233 | MS.gene24561:CDS | 40.0% |
!! | GATTGGTCGAAAGTACTGTT+CGG | - | chr1.2:6231098-6231117 | MS.gene24561:CDS | 40.0% |
AAACCTGGTCGTGAAGTTGT+TGG | - | chr1.2:6231130-6231149 | MS.gene24561:CDS | 45.0% | |
AAGACACGGAAGAGAGATCT+GGG | - | chr1.2:6231632-6231651 | MS.gene24561:CDS | 45.0% | |
ACATGCTGAAGAGGGAAAGA+CGG | - | chr1.2:6231585-6231604 | MS.gene24561:CDS | 45.0% | |
ACGAGAACAACAGAAAGAGG+TGG | - | chr1.2:6231453-6231472 | MS.gene24561:CDS | 45.0% | |
AGCCATGCAACAGATGATAG+TGG | - | chr1.2:6231073-6231092 | MS.gene24561:CDS | 45.0% | |
GAATGGAAGTGAGTTAGGTC+AGG | - | chr1.2:6231231-6231250 | MS.gene24561:CDS | 45.0% | |
GTGTGAAGAGTGAAAGTGGA+GGG | - | chr1.2:6231494-6231513 | MS.gene24561:CDS | 45.0% | |
GTTCGGAGTGATGTTAAACC+TGG | - | chr1.2:6231115-6231134 | MS.gene24561:CDS | 45.0% | |
TAAAGGGATAGTTCCTCCTC+AGG | - | chr1.2:6231351-6231370 | MS.gene24561:CDS | 45.0% | |
TCAGGACGATGAAGGAAGAA+CGG | - | chr1.2:6231249-6231268 | MS.gene24561:CDS | 45.0% | |
TGTAGAAGGGGAGAATGTGA+AGG | - | chr1.2:6231321-6231340 | MS.gene24561:CDS | 45.0% | |
! | GAAGGAGAAGAGTGTAGAAG+GGG | - | chr1.2:6231309-6231328 | MS.gene24561:CDS | 45.0% |
!! | GAAGTTGTTGGTTCTGTCGT+GGG | - | chr1.2:6231142-6231161 | MS.gene24561:CDS | 45.0% |
!! | TGAAGTTGTTGGTTCTGTCG+TGG | - | chr1.2:6231141-6231160 | MS.gene24561:CDS | 45.0% |
AAGAGGGAAAGACGGAGCAA+AGG | - | chr1.2:6231593-6231612 | MS.gene24561:CDS | 50.0% | |
AGACACGGAAGAGAGATCTG+GGG | - | chr1.2:6231633-6231652 | MS.gene24561:CDS | 50.0% | |
AGACGGAGCAAAGGAAGAAG+AGG | - | chr1.2:6231602-6231621 | MS.gene24561:CDS | 50.0% | |
CATTGAAAGCCGTGGATGCA+CGG | + | chr1.2:6230994-6231013 | None:intergenic | 50.0% | |
GAACCAACAACTTCACGACC+AGG | + | chr1.2:6231136-6231155 | None:intergenic | 50.0% | |
GAAGACACGGAAGAGAGATC+TGG | - | chr1.2:6231631-6231650 | MS.gene24561:CDS | 50.0% | |
GACGATGAAGGAAGAACGGA+GGG | - | chr1.2:6231253-6231272 | MS.gene24561:CDS | 50.0% | |
GAGTTAGGTCAGGACGATGA+AGG | - | chr1.2:6231241-6231260 | MS.gene24561:CDS | 50.0% | |
GGGACGAGAACAACAGAAAG+AGG | - | chr1.2:6231450-6231469 | MS.gene24561:CDS | 50.0% | |
GGTGTGAAGAGTGAAAGTGG+AGG | - | chr1.2:6231493-6231512 | MS.gene24561:CDS | 50.0% | |
TTAAACCGGCGCAGTCTCAT+AGG | - | chr1.2:6231038-6231057 | MS.gene24561:CDS | 50.0% | |
TTATCTGCTCCGTGCATCCA+CGG | - | chr1.2:6230982-6231001 | MS.gene24561:CDS | 50.0% | |
TTCTTCCTATGAGACTGCGC+CGG | + | chr1.2:6231046-6231065 | None:intergenic | 50.0% | |
!! | GTGGAGGGCTAGTTGATTCT+CGG | - | chr1.2:6231509-6231528 | MS.gene24561:CDS | 50.0% |
!! | TGGAGGGCTAGTTGATTCTC+GGG | - | chr1.2:6231510-6231529 | MS.gene24561:CDS | 50.0% |
GGACGATGAAGGAAGAACGG+AGG | - | chr1.2:6231252-6231271 | MS.gene24561:CDS | 55.0% | |
!! | GTTGTTGGTTCTGTCGTGGG+TGG | - | chr1.2:6231145-6231164 | MS.gene24561:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 6230866 | 6231696 | 6230866 | ID=MS.gene24561 |
chr1.2 | mRNA | 6230866 | 6231696 | 6230866 | ID=MS.gene24561.t1;Parent=MS.gene24561 |
chr1.2 | exon | 6230866 | 6231696 | 6230866 | ID=MS.gene24561.t1.exon1;Parent=MS.gene24561.t1 |
chr1.2 | CDS | 6230866 | 6231696 | 6230866 | ID=cds.MS.gene24561.t1;Parent=MS.gene24561.t1 |
Gene Sequence |
Protein sequence |