Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24772.t1 | XP_003609968.1 | 98.9 | 453 | 5 | 0 | 1 | 453 | 1 | 453 | 1.50E-261 | 911.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24772.t1 | Q9C9P4 | 85.2 | 371 | 55 | 0 | 83 | 453 | 133 | 503 | 1.6e-192 | 673.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24772.t1 | G7JS67 | 98.9 | 453 | 5 | 0 | 1 | 453 | 1 | 453 | 1.1e-261 | 911.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene24772 | 0.865661 | 5.02E-65 | -1.69E-46 |
| MS.gene049151 | MS.gene24772 | 0.849511 | 3.08E-60 | -1.69E-46 |
| MS.gene049153 | MS.gene24772 | 0.863191 | 2.97E-64 | -1.69E-46 |
| MS.gene049260 | MS.gene24772 | 0.898373 | 5.65E-77 | -1.69E-46 |
| MS.gene050128 | MS.gene24772 | 0.807462 | 5.00E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene24772 | 0.817127 | 3.87E-52 | -1.69E-46 |
| MS.gene050900 | MS.gene24772 | 0.81819 | 2.23E-52 | -1.69E-46 |
| MS.gene051360 | MS.gene24772 | 0.830522 | 2.80E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene24772 | 0.826401 | 2.77E-54 | -1.69E-46 |
| MS.gene052188 | MS.gene24772 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene24772 | 0.802153 | 6.42E-49 | -1.69E-46 |
| MS.gene053555 | MS.gene24772 | 0.808643 | 2.80E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene24772 | 0.803521 | 3.35E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene24772 | 0.823633 | 1.25E-53 | -1.69E-46 |
| MS.gene055666 | MS.gene24772 | 0.844686 | 6.48E-59 | -1.69E-46 |
| MS.gene057448 | MS.gene24772 | 0.855068 | 8.09E-62 | -1.69E-46 |
| MS.gene057449 | MS.gene24772 | 0.837032 | 6.60E-57 | -1.69E-46 |
| MS.gene057450 | MS.gene24772 | 0.849131 | 3.94E-60 | -1.69E-46 |
| MS.gene057469 | MS.gene24772 | 0.842329 | 2.76E-58 | -1.69E-46 |
| MS.gene057690 | MS.gene24772 | 0.830902 | 2.26E-55 | -1.69E-46 |
| MS.gene058002 | MS.gene24772 | 0.828769 | 7.48E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene24772 | 0.83663 | 8.36E-57 | -1.69E-46 |
| MS.gene058142 | MS.gene24772 | 0.827229 | 1.76E-54 | -1.69E-46 |
| MS.gene05842 | MS.gene24772 | 0.805112 | 1.56E-49 | -1.69E-46 |
| MS.gene058833 | MS.gene24772 | 0.825287 | 5.09E-54 | -1.69E-46 |
| MS.gene058949 | MS.gene24772 | 0.80749 | 4.93E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene24772 | 0.802539 | 5.35E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene24772 | 0.801991 | 6.93E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene24772 | 0.806272 | 8.91E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24772.t1 | MTR_4g124880 | 98.896 | 453 | 5 | 0 | 1 | 453 | 1 | 453 | 0.0 | 935 |
| MS.gene24772.t1 | MTR_2g043530 | 81.416 | 452 | 80 | 1 | 2 | 453 | 3 | 450 | 0.0 | 746 |
| MS.gene24772.t1 | MTR_2g043530 | 81.416 | 452 | 80 | 1 | 2 | 453 | 3 | 450 | 0.0 | 745 |
| MS.gene24772.t1 | MTR_4g124880 | 99.674 | 307 | 1 | 0 | 147 | 453 | 1 | 307 | 0.0 | 639 |
| MS.gene24772.t1 | MTR_1g103020 | 55.450 | 422 | 177 | 4 | 33 | 453 | 23 | 434 | 2.23e-163 | 472 |
| MS.gene24772.t1 | MTR_4g096690 | 60.477 | 377 | 146 | 3 | 79 | 453 | 57 | 432 | 2.62e-163 | 472 |
| MS.gene24772.t1 | MTR_8g099695 | 49.057 | 424 | 215 | 1 | 33 | 455 | 23 | 446 | 1.62e-150 | 439 |
| MS.gene24772.t1 | MTR_8g099715 | 44.500 | 400 | 168 | 5 | 57 | 455 | 12 | 358 | 2.92e-116 | 349 |
| MS.gene24772.t1 | MTR_1g069385 | 41.889 | 413 | 203 | 9 | 70 | 450 | 23 | 430 | 3.45e-89 | 282 |
| MS.gene24772.t1 | MTR_1g069385 | 46.474 | 312 | 154 | 5 | 147 | 450 | 1 | 307 | 1.68e-79 | 253 |
| MS.gene24772.t1 | MTR_8g099700 | 45.247 | 263 | 115 | 3 | 57 | 318 | 55 | 289 | 2.25e-73 | 234 |
| MS.gene24772.t1 | MTR_8g099705 | 51.240 | 121 | 54 | 1 | 348 | 463 | 1 | 121 | 1.69e-34 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24772.t1 | AT1G74960 | 79.859 | 427 | 76 | 4 | 36 | 453 | 78 | 503 | 0.0 | 694 |
| MS.gene24772.t1 | AT1G74960 | 79.859 | 427 | 76 | 4 | 36 | 453 | 78 | 503 | 0.0 | 694 |
| MS.gene24772.t1 | AT1G74960 | 79.859 | 427 | 76 | 4 | 36 | 453 | 78 | 503 | 0.0 | 694 |
| MS.gene24772.t1 | AT5G46290 | 58.098 | 389 | 162 | 1 | 66 | 453 | 47 | 435 | 6.16e-165 | 476 |
| MS.gene24772.t1 | AT5G46290 | 58.530 | 381 | 157 | 1 | 66 | 445 | 47 | 427 | 5.22e-163 | 472 |
| MS.gene24772.t1 | AT5G46290 | 46.272 | 389 | 153 | 3 | 66 | 453 | 47 | 380 | 2.38e-116 | 350 |
| MS.gene24772.t1 | AT2G04540 | 39.750 | 400 | 205 | 8 | 79 | 450 | 30 | 421 | 4.57e-81 | 260 |
Find 133 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTCTCTTTACAAATTT+TGG | 0.039644 | 8.4:-9879810 | None:intergenic |
| TAACATACCACGTCTTTATC+TGG | 0.180757 | 8.4:-9883448 | None:intergenic |
| CCTAGTTGATTGACAATGTT+AGG | 0.262313 | 8.4:-9884806 | None:intergenic |
| CAGCTTCACCTCTGATGATA+TGG | 0.266974 | 8.4:-9880414 | None:intergenic |
| TCCACCATCCTCGCCCTTAC+GGG | 0.269962 | 8.4:+9884727 | MS.gene24772:CDS |
| TTCTTTCTTCAGAGGATTGC+TGG | 0.283303 | 8.4:+9879750 | MS.gene24772:intron |
| GCTGTAGAGATAGAATAATT+TGG | 0.292211 | 8.4:-9880352 | None:intergenic |
| CAAGCTCTGATTCATTGTTT+TGG | 0.300298 | 8.4:+9883053 | MS.gene24772:CDS |
| ACTACCCGTCTTTGCTTTGT+AGG | 0.309185 | 8.4:-9879536 | None:intergenic |
| CTCCACCATCCTCGCCCTTA+CGG | 0.330061 | 8.4:+9884726 | MS.gene24772:CDS |
| AACATATATGCAGAATTTCT+TGG | 0.340556 | 8.4:+9881594 | MS.gene24772:CDS |
| CCCATATTTGTTGTTGCAAA+AGG | 0.351308 | 8.4:-9880166 | None:intergenic |
| AAATTATTGTAGAAGATATC+TGG | 0.354741 | 8.4:-9879599 | None:intergenic |
| TAGAAGGATCGGTATTCCTT+TGG | 0.356304 | 8.4:-9880767 | None:intergenic |
| TAAAACAATGGCAGTAGCTT+TGG | 0.360494 | 8.4:+9879478 | MS.gene24772:CDS |
| GCCGATTAAAACTCCACATT+TGG | 0.361881 | 8.4:-9879922 | None:intergenic |
| TGCAGGTTTGGGAGGCTTTG+TGG | 0.372324 | 8.4:+9880728 | MS.gene24772:intron |
| GACTCTGCTATTATTCCAAT+TGG | 0.379283 | 8.4:+9880626 | MS.gene24772:CDS |
| AGAAGGATCGGTATTCCTTT+GGG | 0.380892 | 8.4:-9880766 | None:intergenic |
| CTGTAGGATGTGATGCTTTG+TGG | 0.388921 | 8.4:+9880596 | MS.gene24772:intron |
| GGGAGGCTTTGTGGCATGCC+GGG | 0.392119 | 8.4:+9880737 | MS.gene24772:CDS |
| CCCCGTTACCAAACTACTCT+TGG | 0.393521 | 8.4:+9884695 | MS.gene24772:CDS |
| CCCAAGAGTAGTTTGGTAAC+GGG | 0.395098 | 8.4:-9884696 | None:intergenic |
| AACACCATCTGGTGATCTTA+AGG | 0.395194 | 8.4:+9883025 | MS.gene24772:CDS |
| TGGGAGGCTTTGTGGCATGC+CGG | 0.403976 | 8.4:+9880736 | MS.gene24772:CDS |
| TGTAGGATGTGATGCTTTGT+GGG | 0.408063 | 8.4:+9880597 | MS.gene24772:intron |
| CTGTAGAGATAGAATAATTT+GGG | 0.409092 | 8.4:-9880351 | None:intergenic |
| TCCTTGATATATAGGCAATC+AGG | 0.410362 | 8.4:+9883389 | MS.gene24772:intron |
| CCCGTTACCAAACTACTCTT+GGG | 0.412752 | 8.4:+9884696 | MS.gene24772:CDS |
| CGGGTAGTTGTGACAGGCTT+GGG | 0.416581 | 8.4:+9879551 | MS.gene24772:CDS |
| TTCTAAAGCATCACGCCCTT+GGG | 0.417588 | 8.4:+9880785 | MS.gene24772:CDS |
| CTCAGCATTAGGTGGCTTCA+AGG | 0.426165 | 8.4:+9879944 | MS.gene24772:CDS |
| TTTCTTTGTTGTGACCTCTT+GGG | 0.437189 | 8.4:-9879507 | None:intergenic |
| TTCTACAATAATTTACTCAA+TGG | 0.438814 | 8.4:+9879608 | MS.gene24772:CDS |
| CAAGGGCGTGATGCTTTAGA+AGG | 0.444832 | 8.4:-9880783 | None:intergenic |
| CTTCTAAAGCATCACGCCCT+TGG | 0.452651 | 8.4:+9880784 | MS.gene24772:CDS |
| TTATGGATTGCAGGGATGGA+TGG | 0.453393 | 8.4:+9880327 | MS.gene24772:intron |
| GTGTAATACTTTGCATTGAA+AGG | 0.455280 | 8.4:+9882940 | MS.gene24772:CDS |
| GTTGAGATTACCAGAATGAA+TGG | 0.462504 | 8.4:-9877954 | None:intergenic |
| TATTCCTTTGGGAGAGTGCC+CGG | 0.462858 | 8.4:-9880755 | None:intergenic |
| ACCAAAATTTGTAAAGAGAA+TGG | 0.463226 | 8.4:+9879809 | MS.gene24772:CDS |
| TTTGTTGTGACCTCTTGGGC+AGG | 0.466126 | 8.4:-9879503 | None:intergenic |
| TCTATGATCGGTCATCTACT+AGG | 0.466821 | 8.4:+9883248 | MS.gene24772:CDS |
| TGCCATGCTTGCAATGGACC+TGG | 0.470104 | 8.4:+9880192 | MS.gene24772:CDS |
| TATGGATTGCAGGGATGGAT+GGG | 0.470852 | 8.4:+9880328 | MS.gene24772:intron |
| GATATATAGGCAATCAGGAC+AGG | 0.472204 | 8.4:+9883394 | MS.gene24772:intron |
| TCAGCGAATTGTCCGAGGAC+GGG | 0.474925 | 8.4:+9884649 | MS.gene24772:intron |
| ACGGGTCCTTGTGGAGCGGC+AGG | 0.483060 | 8.4:+9884667 | MS.gene24772:CDS |
| TGTAATACTTTGCATTGAAA+GGG | 0.485379 | 8.4:+9882941 | MS.gene24772:CDS |
| CTAGTTGATTGACAATGTTA+GGG | 0.487189 | 8.4:-9884805 | None:intergenic |
| AAGCTTTACGAATATCATAT+AGG | 0.488975 | 8.4:+9880122 | MS.gene24772:CDS |
| AACATACCACGTCTTTATCT+GGG | 0.492113 | 8.4:-9883447 | None:intergenic |
| CATGCTACATCAACACCATC+TGG | 0.494547 | 8.4:+9883014 | MS.gene24772:CDS |
| AGTTGTGACAGGCTTGGGTG+TGG | 0.505911 | 8.4:+9879556 | MS.gene24772:CDS |
| TTGGGTGTGGTTACACCACT+TGG | 0.507317 | 8.4:+9879569 | MS.gene24772:CDS |
| TTCAGCGAATTGTCCGAGGA+CGG | 0.516483 | 8.4:+9884648 | MS.gene24772:intron |
| CCCCAAGAGTAGTTTGGTAA+CGG | 0.517152 | 8.4:-9884697 | None:intergenic |
| ACTTTGCATTGAAAGGGCAT+TGG | 0.518153 | 8.4:+9882947 | MS.gene24772:CDS |
| AACCAGGTCCATTGCAAGCA+TGG | 0.519213 | 8.4:-9880194 | None:intergenic |
| GTTGCAAAAGGAATACAGAA+AGG | 0.520951 | 8.4:-9880154 | None:intergenic |
| CCTAACATTGTCAATCAACT+AGG | 0.523296 | 8.4:+9884806 | MS.gene24772:CDS |
| TAGCATTAGAAACTGACATA+AGG | 0.523524 | 8.4:-9884842 | None:intergenic |
| CAAAACAATGAATCAGAGCT+TGG | 0.527059 | 8.4:-9883052 | None:intergenic |
| GGGCTCTGCCATGCTTGCAA+TGG | 0.527741 | 8.4:+9880186 | MS.gene24772:CDS |
| AACTTCCTACAAAGCAAAGA+CGG | 0.528880 | 8.4:+9879531 | MS.gene24772:CDS |
| AGAAGAATTGGAGCATGCTA+AGG | 0.530198 | 8.4:+9881348 | MS.gene24772:CDS |
| AATCGTGATGGATTTGTCAT+GGG | 0.531302 | 8.4:+9881301 | MS.gene24772:CDS |
| TTTCCCCGTAAGGGCGAGGA+TGG | 0.532586 | 8.4:-9884731 | None:intergenic |
| TTCGCACGTGACTGACATGC+AGG | 0.533039 | 8.4:-9877843 | None:intergenic |
| GAATCGTGATGGATTTGTCA+TGG | 0.538209 | 8.4:+9881300 | MS.gene24772:intron |
| ACGGGTAGTTGTGACAGGCT+TGG | 0.538612 | 8.4:+9879550 | MS.gene24772:CDS |
| CAAAGACGGGTAGTTGTGAC+AGG | 0.539386 | 8.4:+9879545 | MS.gene24772:CDS |
| GAAAGGGCATTGGTCCAGTC+GGG | 0.540117 | 8.4:+9882957 | MS.gene24772:CDS |
| CCCCGTAAGGGCGAGGATGG+TGG | 0.542630 | 8.4:-9884728 | None:intergenic |
| TGCTACAGCTTCTACACCAC+CGG | 0.544236 | 8.4:-9883276 | None:intergenic |
| ATGCTCTATCTGCTAACAGC+GGG | 0.552465 | 8.4:+9879840 | MS.gene24772:CDS |
| TGATATTCGTAAAGCTTCGA+TGG | 0.552755 | 8.4:-9880116 | None:intergenic |
| GTCAATTTGATCTATAAATG+AGG | 0.553684 | 8.4:-9884780 | None:intergenic |
| AGATTACCAGAATGAATGGA+TGG | 0.556232 | 8.4:-9877950 | None:intergenic |
| TTCACCTCTGATGATATGGT+TGG | 0.556394 | 8.4:-9880410 | None:intergenic |
| TGAAAGGGCATTGGTCCAGT+CGG | 0.557532 | 8.4:+9882956 | MS.gene24772:CDS |
| GGTCATCTACTAGGTGCATC+CGG | 0.562316 | 8.4:+9883257 | MS.gene24772:CDS |
| GCTCCACAAGGACCCGTCCT+CGG | 0.563668 | 8.4:-9884661 | None:intergenic |
| TGTCCGAGGACGGGTCCTTG+TGG | 0.567013 | 8.4:+9884658 | MS.gene24772:CDS |
| CGTGTAGAGTGATGAAGAAG+TGG | 0.569747 | 8.4:-9877807 | None:intergenic |
| TAAAATTTACCATCAGGATG+TGG | 0.576322 | 8.4:-9881654 | None:intergenic |
| AATTTACTCAATGGTGTCAG+TGG | 0.582043 | 8.4:+9879617 | MS.gene24772:CDS |
| ACTTCCTACAAAGCAAAGAC+GGG | 0.585727 | 8.4:+9879532 | MS.gene24772:CDS |
| GTAGGATGTGATGCTTTGTG+GGG | 0.586382 | 8.4:+9880598 | MS.gene24772:intron |
| ATATTTGGTGCAGGTTTGGG+AGG | 0.586750 | 8.4:+9880720 | MS.gene24772:intron |
| GATGAGAGAACTCCGCCAGT+GGG | 0.587987 | 8.4:-9884758 | None:intergenic |
| CCACCATCCTCGCCCTTACG+GGG | 0.588494 | 8.4:+9884728 | MS.gene24772:CDS |
| AGAAGCTGTAGCAACAGTAC+AGG | 0.589449 | 8.4:+9883286 | MS.gene24772:CDS |
| ATGATATTACAGAATCGTGA+TGG | 0.590365 | 8.4:+9881289 | MS.gene24772:intron |
| TTACGGGGAAAATTCCCCAC+TGG | 0.591017 | 8.4:+9884743 | MS.gene24772:CDS |
| AATTCTACAAAATCTATGAT+CGG | 0.591524 | 8.4:+9883236 | MS.gene24772:CDS |
| GCGTGATGCTTTAGAAGGAT+CGG | 0.592328 | 8.4:-9880778 | None:intergenic |
| ATATATGCAGAATTTCTTGG+TGG | 0.592841 | 8.4:+9881597 | MS.gene24772:CDS |
| GAGTTAGATAAAACCAAATG+TGG | 0.595646 | 8.4:+9879909 | MS.gene24772:CDS |
| AGTGAAAAGATGTTCTGATA+CGG | 0.601809 | 8.4:-9877871 | None:intergenic |
| GATCTACCTGCCGCTCCACA+AGG | 0.602912 | 8.4:-9884673 | None:intergenic |
| TGGAATTACTGAAGATGTGA+TGG | 0.603643 | 8.4:+9879884 | MS.gene24772:CDS |
| AGTCACGTGATATGCATCGC+AGG | 0.603663 | 8.4:-9881628 | None:intergenic |
| ATCGTGATGGATTTGTCATG+GGG | 0.604178 | 8.4:+9881302 | MS.gene24772:CDS |
| ATATTTCAGCGAATTGTCCG+AGG | 0.605979 | 8.4:+9884644 | MS.gene24772:intron |
| ATAAGTATTACAGTATCCCA+AGG | 0.611602 | 8.4:-9880801 | None:intergenic |
| CTTCTTCATCACTCTACACG+TGG | 0.613055 | 8.4:+9877810 | MS.gene24772:CDS |
| CATGCCGGGCACTCTCCCAA+AGG | 0.617185 | 8.4:+9880751 | MS.gene24772:CDS |
| CCGTTACCAAACTACTCTTG+GGG | 0.618550 | 8.4:+9884697 | MS.gene24772:CDS |
| AGCTTTGGAACCTGCCCAAG+AGG | 0.621929 | 8.4:+9879493 | MS.gene24772:CDS |
| CCAGTCGGGAGTTTCAAAAG+AGG | 0.627585 | 8.4:+9882971 | MS.gene24772:CDS |
| CACGTGACTGACATGCAGGA+TGG | 0.629384 | 8.4:-9877839 | None:intergenic |
| CAAATTTCAAGGTAAAACAA+TGG | 0.631881 | 8.4:+9879466 | MS.gene24772:intron |
| TTAATCGGCTCAGCATTAGG+TGG | 0.634657 | 8.4:+9879936 | MS.gene24772:CDS |
| ATATATAGGCAATCAGGACA+GGG | 0.638829 | 8.4:+9883395 | MS.gene24772:intron |
| CGGGGAAAATTCCCCACTGG+CGG | 0.638960 | 8.4:+9884746 | MS.gene24772:CDS |
| CCAAGAGTAGTTTGGTAACG+GGG | 0.639061 | 8.4:-9884695 | None:intergenic |
| GTGACTGAGCCACATCCTGA+TGG | 0.640223 | 8.4:+9881645 | MS.gene24772:CDS |
| GCAGCCAACCATATCATCAG+AGG | 0.652104 | 8.4:+9880406 | MS.gene24772:CDS |
| ATAGGCAATCAGGACAGGGT+GGG | 0.653135 | 8.4:+9883399 | MS.gene24772:intron |
| CGTTACCAAACTACTCTTGG+GGG | 0.655977 | 8.4:+9884698 | MS.gene24772:CDS |
| GAGGACGGGTCCTTGTGGAG+CGG | 0.659762 | 8.4:+9884663 | MS.gene24772:CDS |
| TAGGATGTGATGCTTTGTGG+GGG | 0.661354 | 8.4:+9880599 | MS.gene24772:intron |
| TATAGGCAATCAGGACAGGG+TGG | 0.670479 | 8.4:+9883398 | MS.gene24772:intron |
| GGATGAGAGAACTCCGCCAG+TGG | 0.679059 | 8.4:-9884759 | None:intergenic |
| CATCTACTAGGTGCATCCGG+TGG | 0.679685 | 8.4:+9883260 | MS.gene24772:CDS |
| TATTCCTTAAGATCACCAGA+TGG | 0.680897 | 8.4:-9883029 | None:intergenic |
| TATGCTCTATCTGCTAACAG+CGG | 0.684258 | 8.4:+9879839 | MS.gene24772:CDS |
| ATATCTGGATCATGACCAAG+TGG | 0.685208 | 8.4:-9879584 | None:intergenic |
| TAAGTATTACAGTATCCCAA+GGG | 0.698845 | 8.4:-9880800 | None:intergenic |
| ATGAGAGAACTCCGCCAGTG+GGG | 0.707740 | 8.4:-9884757 | None:intergenic |
| TCGTGATGGATTTGTCATGG+GGG | 0.752537 | 8.4:+9881303 | MS.gene24772:CDS |
| TGAAAACCCAGATAAAGACG+TGG | 0.755345 | 8.4:+9883441 | MS.gene24772:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 9877800 | 9884859 | 9877800 | ID=MS.gene24772 |
| chr8.4 | mRNA | 9877800 | 9884859 | 9877800 | ID=MS.gene24772.t1;Parent=MS.gene24772 |
| chr8.4 | exon | 9877800 | 9877965 | 9877800 | ID=MS.gene24772.t1.exon1;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9877800 | 9877965 | 9877800 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| chr8.4 | exon | 9879477 | 9879682 | 9879477 | ID=MS.gene24772.t1.exon2;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9879477 | 9879682 | 9879477 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| chr8.4 | exon | 9879762 | 9879965 | 9879762 | ID=MS.gene24772.t1.exon3;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9879762 | 9879965 | 9879762 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| chr8.4 | exon | 9880103 | 9880213 | 9880103 | ID=MS.gene24772.t1.exon4;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9880103 | 9880213 | 9880103 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| chr8.4 | exon | 9880340 | 9880435 | 9880340 | ID=MS.gene24772.t1.exon5;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9880340 | 9880435 | 9880340 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| chr8.4 | exon | 9880602 | 9880647 | 9880602 | ID=MS.gene24772.t1.exon6;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9880602 | 9880647 | 9880602 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| chr8.4 | exon | 9880733 | 9880812 | 9880733 | ID=MS.gene24772.t1.exon7;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9880733 | 9880812 | 9880733 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| chr8.4 | exon | 9881301 | 9881369 | 9881301 | ID=MS.gene24772.t1.exon8;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9881301 | 9881369 | 9881301 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| chr8.4 | exon | 9881582 | 9881666 | 9881582 | ID=MS.gene24772.t1.exon9;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9881582 | 9881666 | 9881582 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| chr8.4 | exon | 9882934 | 9883088 | 9882934 | ID=MS.gene24772.t1.exon10;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9882934 | 9883088 | 9882934 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| chr8.4 | exon | 9883227 | 9883307 | 9883227 | ID=MS.gene24772.t1.exon11;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9883227 | 9883307 | 9883227 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| chr8.4 | exon | 9883403 | 9883462 | 9883403 | ID=MS.gene24772.t1.exon12;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9883403 | 9883462 | 9883403 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| chr8.4 | exon | 9884653 | 9884859 | 9884653 | ID=MS.gene24772.t1.exon13;Parent=MS.gene24772.t1 |
| chr8.4 | CDS | 9884653 | 9884859 | 9884653 | ID=cds.MS.gene24772.t1;Parent=MS.gene24772.t1 |
| Gene Sequence |
| Protein sequence |
