Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26231.t1 | XP_003616084.1 | 98.5 | 728 | 10 | 1 | 1 | 727 | 1 | 728 | 0.00E+00 | 1420.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26231.t1 | Q9FGN7 | 61.2 | 727 | 275 | 5 | 3 | 727 | 5 | 726 | 8.3e-259 | 894.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26231.t1 | G7K5W1 | 98.5 | 728 | 10 | 1 | 1 | 727 | 1 | 728 | 0.0e+00 | 1420.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene26231 | 0.812265 | 4.62E-51 | -1.69E-46 |
| MS.gene050551 | MS.gene26231 | 0.811393 | 7.16E-51 | -1.69E-46 |
| MS.gene051676 | MS.gene26231 | 0.805835 | 1.10E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene26231 | 0.801882 | 7.30E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene26231 | 0.830388 | 3.02E-55 | -1.69E-46 |
| MS.gene052307 | MS.gene26231 | 0.807231 | 5.59E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene26231 | 0.811478 | 6.86E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene26231 | 0.834351 | 3.15E-56 | -1.69E-46 |
| MS.gene053079 | MS.gene26231 | 0.804989 | 1.66E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene26231 | 0.831801 | 1.36E-55 | -1.69E-46 |
| MS.gene055313 | MS.gene26231 | 0.848102 | 7.59E-60 | -1.69E-46 |
| MS.gene055314 | MS.gene26231 | 0.835395 | 1.72E-56 | -1.69E-46 |
| MS.gene055513 | MS.gene26231 | 0.811304 | 7.48E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene26231 | 0.819801 | 9.60E-53 | -1.69E-46 |
| MS.gene056045 | MS.gene26231 | 0.815289 | 9.98E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene26231 | 0.807263 | 5.51E-50 | -1.69E-46 |
| MS.gene056403 | MS.gene26231 | 0.817725 | 2.84E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene26231 | 0.800756 | 1.24E-48 | -1.69E-46 |
| MS.gene056605 | MS.gene26231 | 0.801794 | 7.61E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene26231 | 0.805478 | 1.31E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene26231 | 0.826967 | 2.03E-54 | -1.69E-46 |
| MS.gene057915 | MS.gene26231 | 0.833813 | 4.30E-56 | -1.69E-46 |
| MS.gene058289 | MS.gene26231 | 0.811366 | 7.26E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene26231 | 0.8221 | 2.84E-53 | -1.69E-46 |
| MS.gene05978 | MS.gene26231 | 0.809289 | 2.04E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene26231 | 0.80884 | 2.54E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene26231 | 0.843038 | 1.79E-58 | -1.69E-46 |
| MS.gene060933 | MS.gene26231 | 0.837113 | 6.29E-57 | -1.69E-46 |
| MS.gene060937 | MS.gene26231 | 0.808573 | 2.90E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26231.t1 | MTR_5g075970 | 98.489 | 728 | 10 | 1 | 1 | 727 | 1 | 728 | 0.0 | 1484 |
| MS.gene26231.t1 | MTR_6g049450 | 75.211 | 355 | 86 | 1 | 310 | 664 | 243 | 595 | 0.0 | 547 |
| MS.gene26231.t1 | MTR_6g049450 | 75.391 | 256 | 62 | 1 | 1 | 256 | 1 | 255 | 7.42e-137 | 416 |
| MS.gene26231.t1 | MTR_6g051400 | 63.462 | 52 | 19 | 0 | 212 | 263 | 8 | 59 | 2.78e-17 | 76.6 |
| MS.gene26231.t1 | MTR_5g078560 | 77.778 | 45 | 10 | 0 | 331 | 375 | 59 | 103 | 2.11e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26231.t1 | AT5G51340 | 61.210 | 727 | 275 | 5 | 3 | 727 | 5 | 726 | 0.0 | 902 |
Find 159 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTGAACCAGTATATTT+TGG | 0.081689 | 5.4:+58437651 | MS.gene26231:CDS |
| GCAGTTGACACATACTTATT+TGG | 0.120120 | 5.4:+58441545 | MS.gene26231:CDS |
| TACTATTTCAATATGATAAA+TGG | 0.195118 | 5.4:-58443427 | None:intergenic |
| TGCCAAGGGTTGTTAAATAT+TGG | 0.199482 | 5.4:-58441587 | None:intergenic |
| GATCTGATAACTGTTGTATT+TGG | 0.202653 | 5.4:+58437768 | MS.gene26231:CDS |
| GCAGCTTTATATAAAGAATT+AGG | 0.211220 | 5.4:+58443318 | MS.gene26231:intron |
| GTGATGTTCCTTCTCAAGTC+TGG | 0.241430 | 5.4:+58441688 | MS.gene26231:CDS |
| CTGCAGGCACTTGATTTGAT+TGG | 0.246316 | 5.4:+58440321 | MS.gene26231:intron |
| CAGTTGACACATACTTATTT+GGG | 0.261713 | 5.4:+58441546 | MS.gene26231:CDS |
| ACATTTGCACTCACTTTATC+TGG | 0.269511 | 5.4:-58437196 | None:intergenic |
| GCAATGGGATGATGATAATT+TGG | 0.276465 | 5.4:+58437126 | MS.gene26231:CDS |
| TTAATAAATGCAATGAGATT+TGG | 0.289386 | 5.4:+58437161 | MS.gene26231:CDS |
| GCAACACTCTTCTATCTATA+TGG | 0.312255 | 5.4:+58438537 | MS.gene26231:CDS |
| ATGAATGGGTTCAGTTCAAT+TGG | 0.315950 | 5.4:+58437621 | MS.gene26231:CDS |
| CTTGATCTTGCTGCTTCTGC+TGG | 0.320668 | 5.4:+58434075 | MS.gene26231:CDS |
| ATTTAGCGTGATTAGCGTTA+TGG | 0.320986 | 5.4:-58433829 | None:intergenic |
| GCCAAGGGTTGTTAAATATT+GGG | 0.323023 | 5.4:-58441586 | None:intergenic |
| AAGCAATAGCAGAAGGACTA+TGG | 0.331016 | 5.4:+58433660 | MS.gene26231:CDS |
| CTTGATATTCCAGAATCTAT+TGG | 0.335505 | 5.4:+58443626 | MS.gene26231:CDS |
| ATCTGATAACTGTTGTATTT+GGG | 0.336485 | 5.4:+58437769 | MS.gene26231:CDS |
| TCACTACTAACCTGCAACTC+TGG | 0.355228 | 5.4:-58436639 | None:intergenic |
| CTGCCATTCCCAAAATATAC+TGG | 0.357430 | 5.4:-58437660 | None:intergenic |
| TAATAAATGCAATGAGATTT+GGG | 0.359630 | 5.4:+58437162 | MS.gene26231:CDS |
| TTTAACAACCCTTGGCAGTT+TGG | 0.361450 | 5.4:+58441593 | MS.gene26231:CDS |
| GCAAATGCTTTGTCAATTGA+AGG | 0.362470 | 5.4:+58436552 | MS.gene26231:CDS |
| TGCAGGCACTTGATTTGATT+GGG | 0.367684 | 5.4:+58440322 | MS.gene26231:intron |
| TTTAGCGTGATTAGCGTTAT+GGG | 0.367809 | 5.4:-58433828 | None:intergenic |
| CTTGCTGCTTCTGCTGGAAA+TGG | 0.378335 | 5.4:+58434081 | MS.gene26231:CDS |
| GAATCCATTACTTCATAAAC+TGG | 0.379344 | 5.4:-58440345 | None:intergenic |
| AGTCAGTGTTATCATCTTGT+TGG | 0.381878 | 5.4:+58434015 | MS.gene26231:CDS |
| ACAGGCATATCCACATTCTA+AGG | 0.382816 | 5.4:-58436598 | None:intergenic |
| GGAAGCCATTCCCCATCAAT+AGG | 0.388509 | 5.4:-58437720 | None:intergenic |
| TCTTAGATCAAAGTCTTTCC+AGG | 0.393758 | 5.4:+58437526 | MS.gene26231:CDS |
| AGTATGCTACCCAGAGTTGC+AGG | 0.403307 | 5.4:+58436629 | MS.gene26231:CDS |
| TATAAAGAATTAGGAGAAAG+AGG | 0.407292 | 5.4:+58443327 | MS.gene26231:CDS |
| AGGAGAAAGAGGAAATGAAT+TGG | 0.410295 | 5.4:+58443338 | MS.gene26231:CDS |
| TTGGAATTACTGATGGTGTC+AGG | 0.411471 | 5.4:+58438407 | MS.gene26231:CDS |
| GACTTCAACGATTGGGAAGA+AGG | 0.415786 | 5.4:-58433765 | None:intergenic |
| ACTGGTGTTCTCTTTGCTTA+CGG | 0.421280 | 5.4:+58440390 | MS.gene26231:CDS |
| AGCCAACAGAATGAGCATAT+TGG | 0.429005 | 5.4:-58439863 | None:intergenic |
| TGATGTTCCTTCTCAAGTCT+GGG | 0.431657 | 5.4:+58441689 | MS.gene26231:CDS |
| AATCTGAAGACCTGCATAAG+AGG | 0.433902 | 5.4:+58443385 | MS.gene26231:CDS |
| GCTGGCAGGCCAATAGATTC+TGG | 0.437072 | 5.4:-58443635 | None:intergenic |
| GTTGTAGCAATTGTTGTTGA+AGG | 0.440815 | 5.4:+58433945 | MS.gene26231:intron |
| GTAGGGGTTAGAGAGAAAAC+TGG | 0.445928 | 5.4:+58440372 | MS.gene26231:CDS |
| AGTTCCACAATTACATGAGT+TGG | 0.448049 | 5.4:+58443559 | MS.gene26231:CDS |
| TTCTGCTCGTGTGAGCTCTA+AGG | 0.449899 | 5.4:-58438608 | None:intergenic |
| GTTGTATTTGGGCGCCCAAA+AGG | 0.455207 | 5.4:+58437780 | MS.gene26231:CDS |
| CCAGGTCTGATCTTCACTAC+AGG | 0.456609 | 5.4:+58437544 | MS.gene26231:CDS |
| TTTGAGATCGTCTTTGACCT+TGG | 0.457471 | 5.4:+58441653 | MS.gene26231:CDS |
| CGATTGGGAAGAAGGAAACT+TGG | 0.457515 | 5.4:-58433757 | None:intergenic |
| TCCCAATATTTAACAACCCT+TGG | 0.460214 | 5.4:+58441585 | MS.gene26231:CDS |
| TCAATGCTAGTTGATATAGA+TGG | 0.466176 | 5.4:+58443677 | MS.gene26231:CDS |
| CACTCTTCTATCTATATGGC+TGG | 0.467721 | 5.4:+58438541 | MS.gene26231:CDS |
| AGAATACGCTGAAGCGCAGC+AGG | 0.467829 | 5.4:+58438627 | MS.gene26231:CDS |
| CAATCTGGATGCTGCTGTGA+GGG | 0.468077 | 5.4:+58437452 | MS.gene26231:CDS |
| GCTGTTTCTTATATCTGCAT+TGG | 0.468996 | 5.4:+58440179 | MS.gene26231:CDS |
| AATTACATGAGTTGGAAATC+AGG | 0.469313 | 5.4:+58443567 | MS.gene26231:CDS |
| CTGCCTTTGCTATTTCTCCT+CGG | 0.475620 | 5.4:-58433706 | None:intergenic |
| TCATTATATTGAAGCAGTAA+AGG | 0.476671 | 5.4:+58439905 | MS.gene26231:CDS |
| TCATTATAAAAGAGCAAGCC+AGG | 0.477095 | 5.4:-58437366 | None:intergenic |
| AATATTGGGAAATAAGTTGA+AGG | 0.479547 | 5.4:-58441572 | None:intergenic |
| CATCAGCCAGCCTCTTATGC+AGG | 0.479985 | 5.4:-58443395 | None:intergenic |
| TTAGCACCACCTCCTATTGA+TGG | 0.483364 | 5.4:+58437708 | MS.gene26231:CDS |
| GCAGATGAGTTATTGAAGCT+TGG | 0.485607 | 5.4:+58438388 | MS.gene26231:intron |
| CAGCATCCAGATTGTCAACA+TGG | 0.487902 | 5.4:-58437443 | None:intergenic |
| AAGAAACAGCTGCATAAACT+TGG | 0.488131 | 5.4:-58440166 | None:intergenic |
| TGCACCCCATGTTGACAATC+TGG | 0.490493 | 5.4:+58437437 | MS.gene26231:CDS |
| TGCAATGGCAGGACCAAGCA+TGG | 0.493939 | 5.4:+58443592 | MS.gene26231:CDS |
| GAAATCAGGCGTGCAATGGC+AGG | 0.494077 | 5.4:+58443581 | MS.gene26231:CDS |
| TGTGGAAAGCGCATACAGTC+GGG | 0.497372 | 5.4:+58437816 | MS.gene26231:CDS |
| TGGGCCAGTTTATGAAGTAA+TGG | 0.502117 | 5.4:+58440341 | MS.gene26231:CDS |
| AGATTATTAACTCCCATGCT+TGG | 0.509167 | 5.4:-58443605 | None:intergenic |
| GATGGAACGGGTGCTTGTGC+TGG | 0.512012 | 5.4:-58443653 | None:intergenic |
| ACTAGCATTGATGATGGAAC+GGG | 0.513415 | 5.4:-58443665 | None:intergenic |
| CTGATCTTCACTACAGGGAA+AGG | 0.519030 | 5.4:+58437550 | MS.gene26231:CDS |
| ATATCAACTAGCATTGATGA+TGG | 0.519320 | 5.4:-58443671 | None:intergenic |
| CGTTATGGGAATGATGAAGA+AGG | 0.519529 | 5.4:-58433814 | None:intergenic |
| GTCAATTGAAGGAGACTACC+GGG | 0.520011 | 5.4:+58436563 | MS.gene26231:CDS |
| TCGGGGATGCGTATAATTCA+AGG | 0.520091 | 5.4:+58437834 | MS.gene26231:CDS |
| AGCAATAGCAGAAGGACTAT+GGG | 0.521406 | 5.4:+58433661 | MS.gene26231:CDS |
| TTAAACAAAACTTGTTTCTG+AGG | 0.523019 | 5.4:-58434048 | None:intergenic |
| CACTACTAACCTGCAACTCT+GGG | 0.524476 | 5.4:-58436638 | None:intergenic |
| TGAATGGGTTCAGTTCAATT+GGG | 0.525092 | 5.4:+58437622 | MS.gene26231:CDS |
| TGCGTGACACTGTACAAGCC+AGG | 0.526369 | 5.4:+58441625 | MS.gene26231:CDS |
| TGATGCTGAATCTAATTCAC+AGG | 0.529148 | 5.4:+58440202 | MS.gene26231:CDS |
| ATTTCCAACTCATGTAATTG+TGG | 0.531387 | 5.4:-58443563 | None:intergenic |
| TGCATGCCCACCTCATGCAA+TGG | 0.532942 | 5.4:+58437110 | MS.gene26231:CDS |
| GTGTGGAAAGCGCATACAGT+CGG | 0.533624 | 5.4:+58437815 | MS.gene26231:CDS |
| GAAGGATTTCAACAAAGTTG+TGG | 0.538192 | 5.4:+58436505 | MS.gene26231:intron |
| CACCTCCTATTGATGGGGAA+TGG | 0.538532 | 5.4:+58437715 | MS.gene26231:CDS |
| TGTAGAATTCGTTTGGCGAA+GGG | 0.540683 | 5.4:+58441519 | MS.gene26231:intron |
| GTGGTAGAAGACGTGGAAAA+CGG | 0.543016 | 5.4:+58443702 | MS.gene26231:CDS |
| TAGCACCACCTCCTATTGAT+GGG | 0.543363 | 5.4:+58437709 | MS.gene26231:CDS |
| TGAAGACCTGCATAAGAGGC+TGG | 0.544200 | 5.4:+58443389 | MS.gene26231:CDS |
| TGATACTAACACAACGTTCG+AGG | 0.546463 | 5.4:-58433856 | None:intergenic |
| AACTAGCATTGATGATGGAA+CGG | 0.548065 | 5.4:-58443666 | None:intergenic |
| AACAGCTGAGAAACATGAAT+GGG | 0.548330 | 5.4:+58437607 | MS.gene26231:CDS |
| GAACGGGTGCTTGTGCTGGC+AGG | 0.548345 | 5.4:-58443649 | None:intergenic |
| TTGTAGAATTCGTTTGGCGA+AGG | 0.549000 | 5.4:+58441518 | MS.gene26231:intron |
| GCATGCCCACCTCATGCAAT+GGG | 0.550739 | 5.4:+58437111 | MS.gene26231:CDS |
| TGCATCATTGAGATGCTAAG+AGG | 0.551180 | 5.4:+58439840 | MS.gene26231:CDS |
| GGCCAATATGCTCATTCTGT+TGG | 0.551977 | 5.4:+58439861 | MS.gene26231:CDS |
| CATCATCCCATTGCATGAGG+TGG | 0.552934 | 5.4:-58437117 | None:intergenic |
| GGGAATGGCAGAAGGACACT+AGG | 0.555612 | 5.4:+58437672 | MS.gene26231:CDS |
| TGTCAATTGAAGGAGACTAC+CGG | 0.555860 | 5.4:+58436562 | MS.gene26231:CDS |
| TGATCTTCACTACAGGGAAA+GGG | 0.555873 | 5.4:+58437551 | MS.gene26231:CDS |
| CTAGTTGATATAGATGGTAG+TGG | 0.556656 | 5.4:+58443683 | MS.gene26231:CDS |
| GAACAGCTGAGAAACATGAA+TGG | 0.557631 | 5.4:+58437606 | MS.gene26231:CDS |
| CACTTCAACTCAAAACAAGA+TGG | 0.562475 | 5.4:-58433973 | None:intergenic |
| ATCACAAAGCTTCTTTGCCA+AGG | 0.563358 | 5.4:-58441670 | None:intergenic |
| TGCTTCAATATAATGAAAGA+CGG | 0.567370 | 5.4:-58439898 | None:intergenic |
| CCTCAGAGACAACAATGCCC+TGG | 0.567425 | 5.4:+58437348 | MS.gene26231:intron |
| CTGCTGTGAGGGCTGAAAAG+AGG | 0.568371 | 5.4:+58437463 | MS.gene26231:CDS |
| ATACAATGGCCAAACTGCCA+AGG | 0.569363 | 5.4:-58441602 | None:intergenic |
| TCAGTTTCTTGAAAACAAAG+TGG | 0.569453 | 5.4:+58438585 | MS.gene26231:CDS |
| GTAGCATACTTCAGTAGCAC+AGG | 0.569812 | 5.4:-58436616 | None:intergenic |
| TGGGTTCAGTTCAATTGGGA+GGG | 0.569968 | 5.4:+58437626 | MS.gene26231:CDS |
| CAGGTCTGATCTTCACTACA+GGG | 0.570244 | 5.4:+58437545 | MS.gene26231:CDS |
| AGACGATCTCAAAATCTCCC+TGG | 0.571241 | 5.4:-58441643 | None:intergenic |
| CCTGTAGTGAAGATCAGACC+TGG | 0.572154 | 5.4:-58437544 | None:intergenic |
| TGGAATTACTGATGGTGTCA+GGG | 0.573875 | 5.4:+58438408 | MS.gene26231:CDS |
| AGCATCCAGATTGTCAACAT+GGG | 0.577996 | 5.4:-58437442 | None:intergenic |
| TCACATGGCTGTAATATAGT+CGG | 0.579045 | 5.4:-58439816 | None:intergenic |
| AACAAGATCTACAAGAAGCA+AGG | 0.579321 | 5.4:+58440430 | MS.gene26231:CDS |
| ATCATCCCATTGCATGAGGT+GGG | 0.580026 | 5.4:-58437116 | None:intergenic |
| TTGAAGCTTGGAATTACTGA+TGG | 0.582266 | 5.4:+58438400 | MS.gene26231:CDS |
| TCAATCTCCGCCTTAGAATG+TGG | 0.584821 | 5.4:+58436588 | MS.gene26231:CDS |
| GTTGGAAATCAGGCGTGCAA+TGG | 0.586610 | 5.4:+58443577 | MS.gene26231:CDS |
| TACAATGGCCAAACTGCCAA+GGG | 0.586699 | 5.4:-58441601 | None:intergenic |
| GCAATGGCAGGACCAAGCAT+GGG | 0.592635 | 5.4:+58443593 | MS.gene26231:CDS |
| GTCAGCACCCAGACTTGAGA+AGG | 0.594095 | 5.4:-58441696 | None:intergenic |
| ACAATCTGGATGCTGCTGTG+AGG | 0.602674 | 5.4:+58437451 | MS.gene26231:CDS |
| ATGGGTTCAGTTCAATTGGG+AGG | 0.607181 | 5.4:+58437625 | MS.gene26231:CDS |
| GCGTGACACTGTACAAGCCA+GGG | 0.608865 | 5.4:+58441626 | MS.gene26231:CDS |
| CATTCCCCATCAATAGGAGG+TGG | 0.612930 | 5.4:-58437714 | None:intergenic |
| TACAGTGTCACGCAATACAA+TGG | 0.617237 | 5.4:-58441616 | None:intergenic |
| AGAATGGAAGCAATAGCAGA+AGG | 0.637263 | 5.4:+58433653 | None:intergenic |
| AGCCATTCCCCATCAATAGG+AGG | 0.643958 | 5.4:-58437717 | None:intergenic |
| GATGGTAGTGGTAGAAGACG+TGG | 0.645989 | 5.4:+58443695 | MS.gene26231:CDS |
| CATTATAAAAGAGCAAGCCA+GGG | 0.646109 | 5.4:-58437365 | None:intergenic |
| AGCACCACCTCCTATTGATG+GGG | 0.647753 | 5.4:+58437710 | MS.gene26231:CDS |
| GGAATGATGAAGAAGGATTG+TGG | 0.649271 | 5.4:-58433807 | None:intergenic |
| AGTTGACACATACTTATTTG+GGG | 0.650368 | 5.4:+58441547 | MS.gene26231:CDS |
| ATCTCAATGATGCATTCACA+TGG | 0.652328 | 5.4:-58439831 | None:intergenic |
| TATCATCATCCCATTGCATG+AGG | 0.653693 | 5.4:-58437120 | None:intergenic |
| GTGGAAAGCGCATACAGTCG+GGG | 0.661021 | 5.4:+58437817 | MS.gene26231:CDS |
| GCATCCAGATTGTCAACATG+GGG | 0.665416 | 5.4:-58437441 | None:intergenic |
| GGAATTACTGATGGTGTCAG+GGG | 0.666225 | 5.4:+58438409 | MS.gene26231:CDS |
| GGCATATCCACATTCTAAGG+CGG | 0.674816 | 5.4:-58436595 | None:intergenic |
| GTGGGCATGCAATAATGAAG+TGG | 0.679110 | 5.4:-58437098 | None:intergenic |
| ACACATGCAAGAGCTAGTGA+AGG | 0.693732 | 5.4:+58437494 | MS.gene26231:CDS |
| GCAATAGCAGAAGGACTATG+GGG | 0.694633 | 5.4:+58433662 | MS.gene26231:CDS |
| AAACCGAGGAGAAATAGCAA+AGG | 0.702576 | 5.4:+58433703 | MS.gene26231:CDS |
| GCACATATTCTATCGTACGC+GGG | 0.702651 | 5.4:+58437395 | MS.gene26231:CDS |
| TGCACATATTCTATCGTACG+CGG | 0.710853 | 5.4:+58437394 | MS.gene26231:CDS |
| GCAGACCATCATGAAAACCG+AGG | 0.718693 | 5.4:+58433689 | MS.gene26231:CDS |
| TCAATTGAAGGAGACTACCG+GGG | 0.731510 | 5.4:+58436564 | MS.gene26231:CDS |
| CTAAGGCGGAGATTGAACCC+CGG | 0.745368 | 5.4:-58436581 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 58433656 | 58443733 | 58433656 | ID=MS.gene26231 |
| chr5.4 | mRNA | 58433656 | 58443733 | 58433656 | ID=MS.gene26231.t1;Parent=MS.gene26231 |
| chr5.4 | exon | 58433656 | 58433868 | 58433656 | ID=MS.gene26231.t1.exon1;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58433656 | 58433868 | 58433656 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| chr5.4 | exon | 58433952 | 58434112 | 58433952 | ID=MS.gene26231.t1.exon2;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58433952 | 58434112 | 58433952 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| chr5.4 | exon | 58436509 | 58436650 | 58436509 | ID=MS.gene26231.t1.exon3;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58436509 | 58436650 | 58436509 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| chr5.4 | exon | 58437088 | 58437204 | 58437088 | ID=MS.gene26231.t1.exon4;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58437088 | 58437204 | 58437088 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| chr5.4 | exon | 58437354 | 58437855 | 58437354 | ID=MS.gene26231.t1.exon5;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58437354 | 58437855 | 58437354 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| chr5.4 | exon | 58438392 | 58438430 | 58438392 | ID=MS.gene26231.t1.exon6;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58438392 | 58438430 | 58438392 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| chr5.4 | exon | 58438527 | 58438648 | 58438527 | ID=MS.gene26231.t1.exon7;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58438527 | 58438648 | 58438527 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| chr5.4 | exon | 58439780 | 58439926 | 58439780 | ID=MS.gene26231.t1.exon8;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58439780 | 58439926 | 58439780 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| chr5.4 | exon | 58440134 | 58440223 | 58440134 | ID=MS.gene26231.t1.exon9;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58440134 | 58440223 | 58440134 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| chr5.4 | exon | 58440327 | 58440451 | 58440327 | ID=MS.gene26231.t1.exon10;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58440327 | 58440451 | 58440327 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| chr5.4 | exon | 58441524 | 58441729 | 58441524 | ID=MS.gene26231.t1.exon11;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58441524 | 58441729 | 58441524 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| chr5.4 | exon | 58443322 | 58443446 | 58443322 | ID=MS.gene26231.t1.exon12;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58443322 | 58443446 | 58443322 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| chr5.4 | exon | 58443539 | 58443733 | 58443539 | ID=MS.gene26231.t1.exon13;Parent=MS.gene26231.t1 |
| chr5.4 | CDS | 58443539 | 58443733 | 58443539 | ID=cds.MS.gene26231.t1;Parent=MS.gene26231.t1 |
| Gene Sequence |
| Protein sequence |
