Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26508.t1 | XP_013458421.2 | 98.9 | 369 | 3 | 1 | 1 | 369 | 1 | 368 | 2.30E-208 | 734.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26508.t1 | Q6AWY6 | 39.2 | 365 | 173 | 13 | 9 | 363 | 53 | 378 | 1.0e-42 | 175.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26508.t1 | A0A396IG50 | 98.9 | 369 | 3 | 1 | 1 | 369 | 1 | 368 | 1.7e-208 | 734.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26508.t1 | TF | GRF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene26508 | 0.806892 | 6.60E-50 | -1.69E-46 |
| MS.gene051816 | MS.gene26508 | 0.959497 | 1.66E-117 | -1.69E-46 |
| MS.gene051955 | MS.gene26508 | 0.815098 | 1.10E-51 | -1.69E-46 |
| MS.gene052367 | MS.gene26508 | 0.804111 | 2.53E-49 | -1.69E-46 |
| MS.gene053348 | MS.gene26508 | 0.806861 | 6.70E-50 | -1.69E-46 |
| MS.gene054551 | MS.gene26508 | 0.81106 | 8.46E-51 | -1.69E-46 |
| MS.gene054593 | MS.gene26508 | 0.804547 | 2.05E-49 | -1.69E-46 |
| MS.gene054885 | MS.gene26508 | 0.800307 | 1.53E-48 | -1.69E-46 |
| MS.gene055308 | MS.gene26508 | 0.82164 | 3.63E-53 | -1.69E-46 |
| MS.gene055578 | MS.gene26508 | 0.80907 | 2.27E-50 | -1.69E-46 |
| MS.gene055957 | MS.gene26508 | 0.818107 | 2.33E-52 | -1.69E-46 |
| MS.gene056041 | MS.gene26508 | 0.825913 | 3.62E-54 | -1.69E-46 |
| MS.gene05640 | MS.gene26508 | 0.823247 | 1.53E-53 | -1.69E-46 |
| MS.gene057458 | MS.gene26508 | 0.834263 | 3.32E-56 | -1.69E-46 |
| MS.gene058853 | MS.gene26508 | 0.824665 | 7.14E-54 | -1.69E-46 |
| MS.gene060473 | MS.gene26508 | 0.834844 | 2.37E-56 | -1.69E-46 |
| MS.gene060565 | MS.gene26508 | 0.834428 | 3.02E-56 | -1.69E-46 |
| MS.gene06093 | MS.gene26508 | 0.826903 | 2.10E-54 | -1.69E-46 |
| MS.gene061099 | MS.gene26508 | 0.812959 | 3.26E-51 | -1.69E-46 |
| MS.gene061260 | MS.gene26508 | 0.817346 | 3.46E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26508.t1 | MTR_4g125490 | 98.910 | 367 | 3 | 1 | 1 | 367 | 1 | 366 | 0.0 | 750 |
| MS.gene26508.t1 | MTR_2g041430 | 61.680 | 381 | 103 | 12 | 5 | 369 | 3 | 356 | 7.08e-140 | 402 |
| MS.gene26508.t1 | MTR_2g041430 | 61.804 | 377 | 101 | 12 | 5 | 365 | 3 | 352 | 2.99e-138 | 397 |
| MS.gene26508.t1 | MTR_2g041430 | 61.804 | 377 | 101 | 12 | 5 | 365 | 3 | 352 | 3.16e-138 | 397 |
| MS.gene26508.t1 | MTR_8g020560 | 42.740 | 365 | 155 | 16 | 1 | 338 | 1 | 338 | 1.17e-68 | 219 |
| MS.gene26508.t1 | MTR_0001s0490 | 39.266 | 354 | 147 | 14 | 9 | 352 | 25 | 320 | 2.62e-55 | 185 |
| MS.gene26508.t1 | MTR_5g027030 | 60.550 | 109 | 31 | 2 | 9 | 117 | 16 | 112 | 1.31e-39 | 143 |
| MS.gene26508.t1 | MTR_1g017490 | 56.897 | 116 | 44 | 2 | 7 | 117 | 9 | 123 | 1.43e-39 | 147 |
| MS.gene26508.t1 | MTR_1g017490 | 56.897 | 116 | 44 | 2 | 7 | 117 | 142 | 256 | 1.88e-39 | 148 |
| MS.gene26508.t1 | MTR_7g104050 | 53.383 | 133 | 41 | 4 | 6 | 124 | 68 | 193 | 5.86e-37 | 137 |
| MS.gene26508.t1 | MTR_7g104050 | 53.383 | 133 | 41 | 4 | 6 | 124 | 68 | 193 | 7.19e-37 | 137 |
| MS.gene26508.t1 | MTR_3g092330 | 48.739 | 119 | 42 | 4 | 9 | 127 | 113 | 212 | 4.13e-27 | 112 |
| MS.gene26508.t1 | MTR_8g035910 | 45.536 | 112 | 47 | 3 | 6 | 117 | 46 | 143 | 4.98e-21 | 94.4 |
| MS.gene26508.t1 | MTR_8g035910 | 43.750 | 80 | 34 | 2 | 73 | 152 | 297 | 365 | 4.99e-13 | 70.5 |
| MS.gene26508.t1 | MTR_8g035640 | 64.103 | 39 | 14 | 0 | 73 | 111 | 51 | 89 | 1.66e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26508.t1 | AT3G13960 | 71.053 | 114 | 27 | 3 | 7 | 117 | 14 | 124 | 4.08e-52 | 178 |
| MS.gene26508.t1 | AT2G06200 | 66.667 | 120 | 29 | 2 | 7 | 115 | 43 | 162 | 3.48e-48 | 164 |
| MS.gene26508.t1 | AT2G06200 | 66.667 | 120 | 29 | 2 | 7 | 115 | 4 | 123 | 4.55e-48 | 163 |
| MS.gene26508.t1 | AT4G37740 | 55.118 | 127 | 52 | 3 | 9 | 134 | 164 | 286 | 3.54e-41 | 152 |
| MS.gene26508.t1 | AT2G36400 | 57.377 | 122 | 43 | 3 | 10 | 125 | 77 | 195 | 6.64e-37 | 138 |
| MS.gene26508.t1 | AT2G22840 | 57.143 | 112 | 44 | 2 | 7 | 117 | 131 | 239 | 1.29e-34 | 134 |
| MS.gene26508.t1 | AT3G52910 | 53.390 | 118 | 39 | 3 | 10 | 117 | 83 | 194 | 3.85e-33 | 127 |
| MS.gene26508.t1 | AT5G53660 | 50.000 | 110 | 38 | 2 | 8 | 117 | 58 | 150 | 6.34e-27 | 110 |
| MS.gene26508.t1 | AT2G06200 | 92.157 | 51 | 2 | 1 | 67 | 115 | 1 | 51 | 5.60e-26 | 102 |
| MS.gene26508.t1 | AT4G24150 | 42.149 | 121 | 64 | 2 | 2 | 117 | 104 | 223 | 7.75e-23 | 99.4 |
| MS.gene26508.t1 | AT4G24150 | 42.149 | 121 | 64 | 2 | 2 | 117 | 142 | 261 | 1.33e-22 | 99.4 |
| MS.gene26508.t1 | AT4G24150 | 36.986 | 146 | 61 | 3 | 2 | 117 | 142 | 286 | 8.73e-21 | 94.0 |
| MS.gene26508.t1 | AT2G45480 | 41.441 | 111 | 64 | 1 | 5 | 114 | 19 | 129 | 1.73e-18 | 85.5 |
| MS.gene26508.t1 | AT2G45480 | 41.441 | 111 | 64 | 1 | 5 | 114 | 17 | 127 | 6.59e-18 | 85.1 |
| MS.gene26508.t1 | AT2G45480 | 41.935 | 93 | 42 | 3 | 70 | 155 | 301 | 388 | 8.78e-13 | 69.7 |
| MS.gene26508.t1 | AT2G45480 | 41.441 | 111 | 64 | 1 | 5 | 114 | 19 | 129 | 6.91e-18 | 85.1 |
| MS.gene26508.t1 | AT2G45480 | 41.935 | 93 | 42 | 3 | 70 | 155 | 303 | 390 | 9.08e-13 | 69.7 |
Find 80 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGAGTTTCTGCTGCTTT+TGG | 0.148849 | 8.1:+6702039 | None:intergenic |
| TGAAGGAACAGGTATGTTTA+TGG | 0.231611 | 8.1:-6702376 | MS.gene26508:intron |
| TGCCACTGAGTTGGAGTAAA+AGG | 0.276188 | 8.1:+6703457 | None:intergenic |
| CTTCTGCACCTCCCTGGCTC+TGG | 0.278943 | 8.1:+6703169 | None:intergenic |
| CCCTTGTTTCTTGACAATAC+TGG | 0.290985 | 8.1:-6702800 | MS.gene26508:CDS |
| CAGAAACTCATGGCTTGATT+TGG | 0.299180 | 8.1:-6702029 | MS.gene26508:CDS |
| GCTTTCTTCACTGAACCTTC+TGG | 0.302685 | 8.1:-6702328 | MS.gene26508:CDS |
| CTTTCACAGTACTTTGAATC+TGG | 0.319625 | 8.1:+6703106 | None:intergenic |
| AAAAGAGGAAGAGGAGCTTA+TGG | 0.356828 | 8.1:+6702246 | None:intergenic |
| CTTCTTCAATGGATGATTCA+TGG | 0.368355 | 8.1:-6702285 | MS.gene26508:CDS |
| TTCTGCACCTCCCTGGCTCT+GGG | 0.368474 | 8.1:+6703170 | None:intergenic |
| ATCTACAAATACATGGCTTC+TGG | 0.368517 | 8.1:-6703412 | MS.gene26508:CDS |
| TTGTCTTGAAATGAGAAGTT+AGG | 0.391585 | 8.1:+6702830 | None:intergenic |
| AGAGGAAAGGGTGGTTAAGA+TGG | 0.391821 | 8.1:+6702876 | None:intergenic |
| GAACTATTTACCAATGGGAT+TGG | 0.400450 | 8.1:-6703206 | MS.gene26508:CDS |
| TTTAAACAGAGAAATTGTTC+TGG | 0.401538 | 8.1:-6702226 | MS.gene26508:CDS |
| TTCATCGTTTCTTTGATGAA+TGG | 0.411092 | 8.1:-6702066 | MS.gene26508:CDS |
| AACTATTTACCAATGGGATT+GGG | 0.420553 | 8.1:-6703205 | MS.gene26508:CDS |
| CCATTTACCTCGTTGGTTTG+TGG | 0.423824 | 8.1:+6701934 | None:intergenic |
| GCCTTGAGGATGGAGGGTTA+TGG | 0.442680 | 8.1:+6702852 | None:intergenic |
| AAGTTTATCAGCTTCTTCAA+TGG | 0.445043 | 8.1:-6702296 | MS.gene26508:CDS |
| GAGGGTTATGGTAGAGGAAA+GGG | 0.446918 | 8.1:+6702864 | None:intergenic |
| TTGATAGTGAGTAGAAGATC+AGG | 0.446923 | 8.1:+6703376 | None:intergenic |
| AAGCATAAGAAGAGTGTTGA+GGG | 0.452542 | 8.1:+6702903 | None:intergenic |
| TCTGTTCTTCTGCACCTCCC+TGG | 0.454328 | 8.1:+6703163 | None:intergenic |
| ACAATTTCTCTGTTTAAAAG+AGG | 0.457057 | 8.1:+6702231 | None:intergenic |
| GAGGAAAGGGTGGTTAAGAT+GGG | 0.457253 | 8.1:+6702877 | None:intergenic |
| GAGTAGAAGATCAGGAGGAA+TGG | 0.465599 | 8.1:+6703384 | None:intergenic |
| GTAAGAGTACTCATTGTCAT+TGG | 0.465700 | 8.1:+6702198 | None:intergenic |
| CTTCCACAGGCTTTCTTGAA+CGG | 0.472599 | 8.1:+6703062 | None:intergenic |
| GGATGGAACTATTTACCAAT+GGG | 0.479254 | 8.1:-6703211 | MS.gene26508:CDS |
| CAATGATGAATGGAAGAAAC+AGG | 0.479723 | 8.1:-6703483 | MS.gene26508:CDS |
| GAAGAACAGATGGAAAGAAA+TGG | 0.480263 | 8.1:-6703150 | MS.gene26508:CDS |
| ATAACAACAACACTGATTGC+AGG | 0.480287 | 8.1:-6702763 | MS.gene26508:intron |
| AAGAAGAGTGTTGAGGGTAA+TGG | 0.482978 | 8.1:+6702909 | None:intergenic |
| GATCAAGGTTGTTACATCTC+AGG | 0.490399 | 8.1:-6702139 | MS.gene26508:CDS |
| TCTCTGTTTAAAAGAGGAAG+AGG | 0.498513 | 8.1:+6702237 | None:intergenic |
| TAACAAACAACAATGATGAA+TGG | 0.501615 | 8.1:-6703493 | None:intergenic |
| AGGATGGAGGGTTATGGTAG+AGG | 0.503413 | 8.1:+6702858 | None:intergenic |
| GTGTGGTGCATGCAGTTGGA+TGG | 0.510680 | 8.1:-6703228 | MS.gene26508:intron |
| TCAAGCTCTTGCCACTGAGT+TGG | 0.513392 | 8.1:+6703448 | None:intergenic |
| TTATGGACTGAAAGAGGAGG+TGG | 0.522907 | 8.1:-6702359 | MS.gene26508:CDS |
| GAAGAGGAGCTTATGGTAAG+TGG | 0.526833 | 8.1:+6702253 | None:intergenic |
| AAGATTGTTGAAGTAGCAGC+AGG | 0.534940 | 8.1:+6703010 | None:intergenic |
| ATCATGAGAAGATGTAGGAA+TGG | 0.536076 | 8.1:+6701973 | None:intergenic |
| ACCAGTATTGTCAAGAAACA+AGG | 0.541001 | 8.1:+6702799 | None:intergenic |
| AAACAACCACAGCAAGATCA+AGG | 0.541674 | 8.1:-6702154 | MS.gene26508:CDS |
| AGAGAAACCATTTACCTCGT+TGG | 0.542197 | 8.1:+6701927 | None:intergenic |
| GTGAAATCATGAGAAGATGT+AGG | 0.543173 | 8.1:+6701968 | None:intergenic |
| GTGAAAGGCACATGCATAGA+GGG | 0.547205 | 8.1:-6703090 | MS.gene26508:CDS |
| GAAGCATAAGAAGAGTGTTG+AGG | 0.548399 | 8.1:+6702902 | None:intergenic |
| GGAGGGTTATGGTAGAGGAA+AGG | 0.556801 | 8.1:+6702863 | None:intergenic |
| GAACAGATGGAAAGAAATGG+AGG | 0.559737 | 8.1:-6703147 | MS.gene26508:CDS |
| TGGATGGAACTATTTACCAA+TGG | 0.564553 | 8.1:-6703212 | MS.gene26508:CDS |
| GAAGAAACATTCATGAAACA+TGG | 0.569282 | 8.1:-6702112 | MS.gene26508:CDS |
| ATAGTGAGTAGAAGATCAGG+AGG | 0.571348 | 8.1:+6703379 | None:intergenic |
| CAGATTCAAAGTACTGTGAA+AGG | 0.571794 | 8.1:-6703105 | MS.gene26508:CDS |
| GGGAGGTGCAGAAGAACAGA+TGG | 0.577454 | 8.1:-6703160 | MS.gene26508:CDS |
| AAACTTCTTATAGTTCCAGA+AGG | 0.579842 | 8.1:+6702313 | None:intergenic |
| AAGTTAGGCCTTGAGGATGG+AGG | 0.587194 | 8.1:+6702845 | None:intergenic |
| ACCATAACCCTCCATCCTCA+AGG | 0.592083 | 8.1:-6702853 | MS.gene26508:CDS |
| AAATGAGAAGTTAGGCCTTG+AGG | 0.594153 | 8.1:+6702838 | None:intergenic |
| AGTTAGGCCTTGAGGATGGA+GGG | 0.597805 | 8.1:+6702846 | None:intergenic |
| GTATGTTTATGGACTGAAAG+AGG | 0.601366 | 8.1:-6702365 | MS.gene26508:CDS |
| AAGAAACATTCATGAAACAT+GGG | 0.603745 | 8.1:-6702111 | MS.gene26508:CDS |
| GAGAAGTTAGGCCTTGAGGA+TGG | 0.604526 | 8.1:+6702842 | None:intergenic |
| CCAAAAGCAGCAGAAACTCA+TGG | 0.605608 | 8.1:-6702039 | MS.gene26508:CDS |
| AGCTCTTATCTACAAATACA+TGG | 0.606523 | 8.1:-6703419 | MS.gene26508:CDS |
| AGTGTTGTTGTTATTGTGAG+AGG | 0.610925 | 8.1:+6702772 | None:intergenic |
| GGAGATTGAAAGCTGAGTGG+TGG | 0.613550 | 8.1:+6701994 | None:intergenic |
| TAACAACCTTGATCTTGCTG+TGG | 0.626299 | 8.1:+6702148 | None:intergenic |
| TGTGAAAGGCACATGCATAG+AGG | 0.626931 | 8.1:-6703091 | MS.gene26508:CDS |
| AAACCGTTCAAGAAAGCCTG+TGG | 0.641388 | 8.1:-6703065 | MS.gene26508:CDS |
| TGTTTATGGACTGAAAGAGG+AGG | 0.650765 | 8.1:-6702362 | MS.gene26508:CDS |
| CCAGTATTGTCAAGAAACAA+GGG | 0.652005 | 8.1:+6702800 | None:intergenic |
| AAATAGACCCAGAGCCAGGG+AGG | 0.659120 | 8.1:-6703177 | MS.gene26508:CDS |
| GGTTATGGTAGAGGAAAGGG+TGG | 0.659870 | 8.1:+6702867 | None:intergenic |
| TTTAGTTCCACAAACCAACG+AGG | 0.729736 | 8.1:-6701941 | MS.gene26508:intron |
| AATGGAGATTGAAAGCTGAG+TGG | 0.781428 | 8.1:+6701991 | None:intergenic |
| TTACAGTGTTGAGACTGATG+AGG | 0.793602 | 8.1:+6703322 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATGGTAAAAATTATTAT+TGG | + | chr8.1:6703293-6703312 | None:intergenic | 15.0% |
| !! | TAATTGAATGTAAATTATCA+TGG | - | chr8.1:6703428-6703447 | MS.gene26508:CDS | 15.0% |
| !! | TATATATAGTCATTCATATA+TGG | + | chr8.1:6701731-6701750 | None:intergenic | 15.0% |
| !!! | AGTTTTTCTCAAATTATTAT+CGG | + | chr8.1:6703230-6703249 | None:intergenic | 15.0% |
| !! | AGAGAACTTATAAAAATAAG+TGG | - | chr8.1:6702445-6702464 | MS.gene26508:intron | 20.0% |
| !! | TTAAACCAACACATATATTT+AGG | - | chr8.1:6702286-6702305 | MS.gene26508:CDS | 20.0% |
| !!! | CTTATCGATTATAAACTTAT+AGG | + | chr8.1:6702387-6702406 | None:intergenic | 20.0% |
| !!! | TTTATGAAAGATTCTCTTTT+TGG | - | chr8.1:6702598-6702617 | MS.gene26508:intron | 20.0% |
| ! | AAGAAACATTCATGAAACAT+GGG | - | chr8.1:6702901-6702920 | MS.gene26508:CDS | 25.0% |
| ! | ACAATTTCTCTGTTTAAAAG+AGG | + | chr8.1:6702784-6702803 | None:intergenic | 25.0% |
| ! | TGAGTTTCGCAAATTATTAT+TGG | + | chr8.1:6703408-6703427 | None:intergenic | 25.0% |
| ! | TTAAGTCGTTTATTCAAACA+TGG | + | chr8.1:6702312-6702331 | None:intergenic | 25.0% |
| ! | TTTAAACAGAGAAATTGTTC+TGG | - | chr8.1:6702786-6702805 | MS.gene26508:CDS | 25.0% |
| !!! | TATTATTGGTGTCAATGTAT+CGG | + | chr8.1:6703394-6703413 | None:intergenic | 25.0% |
| AAACGATGAAAAATCTTCTG+AGG | + | chr8.1:6702936-6702955 | None:intergenic | 30.0% | |
| AAACTTCTTATAGTTCCAGA+AGG | + | chr8.1:6702702-6702721 | None:intergenic | 30.0% | |
| AACTATTTACCAATGGGATT+GGG | - | chr8.1:6701807-6701826 | MS.gene26508:intron | 30.0% | |
| AAGTTTATCAGCTTCTTCAA+TGG | - | chr8.1:6702716-6702735 | MS.gene26508:intron | 30.0% | |
| AGCTCTTATCTACAAATACA+TGG | - | chr8.1:6701593-6701612 | MS.gene26508:intron | 30.0% | |
| AGTGATTAGTGATTTCTCAT+TGG | - | chr8.1:6703454-6703473 | MS.gene26508:CDS | 30.0% | |
| GAAGAAACATTCATGAAACA+TGG | - | chr8.1:6702900-6702919 | MS.gene26508:CDS | 30.0% | |
| TCAAATAGTCCAATCCAAAA+AGG | - | chr8.1:6702537-6702556 | MS.gene26508:intron | 30.0% | |
| TTCATCGTTTCTTTGATGAA+TGG | - | chr8.1:6702946-6702965 | MS.gene26508:CDS | 30.0% | |
| TTGTCTTGAAATGAGAAGTT+AGG | + | chr8.1:6702185-6702204 | None:intergenic | 30.0% | |
| TTTCCTCAAATTATCACCTA+TGG | + | chr8.1:6703167-6703186 | None:intergenic | 30.0% | |
| ! | GGTATTGTTGTTATCTTTGA+AGG | - | chr8.1:6702619-6702638 | MS.gene26508:intron | 30.0% |
| ! | TATGTATGCACTTGTTGATT+TGG | - | chr8.1:6701762-6701781 | MS.gene26508:intron | 30.0% |
| !! | ATTTCTCATTGGCTTGAATT+TGG | - | chr8.1:6703465-6703484 | MS.gene26508:CDS | 30.0% |
| ACCAGTATTGTCAAGAAACA+AGG | + | chr8.1:6702216-6702235 | None:intergenic | 35.0% | |
| ATCATGAGAAGATGTAGGAA+TGG | + | chr8.1:6703042-6703061 | None:intergenic | 35.0% | |
| ATCTACAAATACATGGCTTC+TGG | - | chr8.1:6701600-6701619 | MS.gene26508:intron | 35.0% | |
| CAATCCAAAAAGGTTCATGA+TGG | - | chr8.1:6702547-6702566 | MS.gene26508:intron | 35.0% | |
| CATGGCCTAAATATATGTGT+TGG | + | chr8.1:6702294-6702313 | None:intergenic | 35.0% | |
| CCAGTATTGTCAAGAAACAA+GGG | + | chr8.1:6702215-6702234 | None:intergenic | 35.0% | |
| CTTCTTCAATGGATGATTCA+TGG | - | chr8.1:6702727-6702746 | MS.gene26508:intron | 35.0% | |
| CTTTCACAGTACTTTGAATC+TGG | + | chr8.1:6701909-6701928 | None:intergenic | 35.0% | |
| GAACTATTTACCAATGGGAT+TGG | - | chr8.1:6701806-6701825 | MS.gene26508:intron | 35.0% | |
| GAAGAACAGATGGAAAGAAA+TGG | - | chr8.1:6701862-6701881 | MS.gene26508:intron | 35.0% | |
| GGATGGAACTATTTACCAAT+GGG | - | chr8.1:6701801-6701820 | MS.gene26508:intron | 35.0% | |
| GTGAAATCATGAGAAGATGT+AGG | + | chr8.1:6703047-6703066 | None:intergenic | 35.0% | |
| TCTCTGTTTAAAAGAGGAAG+AGG | + | chr8.1:6702778-6702797 | None:intergenic | 35.0% | |
| TGAAGGAACAGGTATGTTTA+TGG | - | chr8.1:6702636-6702655 | MS.gene26508:intron | 35.0% | |
| TGGATGGAACTATTTACCAA+TGG | - | chr8.1:6701800-6701819 | MS.gene26508:intron | 35.0% | |
| ! | AGTGTTGTTGTTATTGTGAG+AGG | + | chr8.1:6702243-6702262 | None:intergenic | 35.0% |
| ! | ATAACAACAACACTGATTGC+AGG | - | chr8.1:6702249-6702268 | MS.gene26508:CDS | 35.0% |
| ! | ATTTTTCTTCCCAATCCCAT+TGG | + | chr8.1:6701819-6701838 | None:intergenic | 35.0% |
| ! | CATCATGAACCTTTTTGGAT+TGG | + | chr8.1:6702549-6702568 | None:intergenic | 35.0% |
| ! | GTATGTTTATGGACTGAAAG+AGG | - | chr8.1:6702647-6702666 | MS.gene26508:intron | 35.0% |
| ! | GTTGTTATCTTTGAAGGAAC+AGG | - | chr8.1:6702625-6702644 | MS.gene26508:intron | 35.0% |
| !! | AAGCATAAGAAGAGTGTTGA+GGG | + | chr8.1:6702112-6702131 | None:intergenic | 35.0% |
| !! | ATTATCGGTGTTGATGTGTT+TGG | + | chr8.1:6703215-6703234 | None:intergenic | 35.0% |
| !! | CAGATTCAAAGTACTGTGAA+AGG | - | chr8.1:6701907-6701926 | MS.gene26508:intron | 35.0% |
| !! | GTAAGAGTACTCATTGTCAT+TGG | + | chr8.1:6702817-6702836 | None:intergenic | 35.0% |
| !! | GTTGTTTTCAAAACTTCCAC+AGG | + | chr8.1:6701966-6701985 | None:intergenic | 35.0% |
| !! | TTGATAGTGAGTAGAAGATC+AGG | + | chr8.1:6701639-6701658 | None:intergenic | 35.0% |
| !!! | CTTGAATTTGGTTTTGCAGA+TGG | - | chr8.1:6703477-6703496 | MS.gene26508:CDS | 35.0% |
| AAAAGAGGAAGAGGAGCTTA+TGG | + | chr8.1:6702769-6702788 | None:intergenic | 40.0% | |
| AAACAACCACAGCAAGATCA+AGG | - | chr8.1:6702858-6702877 | MS.gene26508:CDS | 40.0% | |
| AAATGAGAAGTTAGGCCTTG+AGG | + | chr8.1:6702177-6702196 | None:intergenic | 40.0% | |
| AAGATTGTTGAAGTAGCAGC+AGG | + | chr8.1:6702005-6702024 | None:intergenic | 40.0% | |
| AAGCTATCGTTGAGACTGAA+TGG | - | chr8.1:6702417-6702436 | MS.gene26508:intron | 40.0% | |
| AATGGAGATTGAAAGCTGAG+TGG | + | chr8.1:6703024-6703043 | None:intergenic | 40.0% | |
| AGAGAAACCATTTACCTCGT+TGG | + | chr8.1:6703088-6703107 | None:intergenic | 40.0% | |
| ATAGTGAGTAGAAGATCAGG+AGG | + | chr8.1:6701636-6701655 | None:intergenic | 40.0% | |
| CAGAAACTCATGGCTTGATT+TGG | - | chr8.1:6702983-6703002 | MS.gene26508:CDS | 40.0% | |
| GAACAGATGGAAAGAAATGG+AGG | - | chr8.1:6701865-6701884 | MS.gene26508:intron | 40.0% | |
| GATCAAGGTTGTTACATCTC+AGG | - | chr8.1:6702873-6702892 | MS.gene26508:CDS | 40.0% | |
| TAACAACCTTGATCTTGCTG+TGG | + | chr8.1:6702867-6702886 | None:intergenic | 40.0% | |
| TCGCCATAGGTGATAATTTG+AGG | - | chr8.1:6703161-6703180 | MS.gene26508:CDS | 40.0% | |
| TGACTAGAGCATGTTGACAA+TGG | + | chr8.1:6703309-6703328 | None:intergenic | 40.0% | |
| ! | AGCACCATCATGAACCTTTT+TGG | + | chr8.1:6702554-6702573 | None:intergenic | 40.0% |
| ! | ATCCTTTTACTCCAACTCAG+TGG | - | chr8.1:6701553-6701572 | MS.gene26508:intron | 40.0% |
| ! | CCCTTGTTTCTTGACAATAC+TGG | - | chr8.1:6702212-6702231 | MS.gene26508:CDS | 40.0% |
| ! | TGTTTATGGACTGAAAGAGG+AGG | - | chr8.1:6702650-6702669 | MS.gene26508:intron | 40.0% |
| ! | TTACAGTGTTGAGACTGATG+AGG | + | chr8.1:6701693-6701712 | None:intergenic | 40.0% |
| ! | TTTAGTTCCACAAACCAACG+AGG | - | chr8.1:6703071-6703090 | MS.gene26508:CDS | 40.0% |
| !! | AAGAAGAGTGTTGAGGGTAA+TGG | + | chr8.1:6702106-6702125 | None:intergenic | 40.0% |
| !! | ATGCACTTGTTGATTTGGTG+TGG | - | chr8.1:6701767-6701786 | MS.gene26508:intron | 40.0% |
| !! | GAAGCATAAGAAGAGTGTTG+AGG | + | chr8.1:6702113-6702132 | None:intergenic | 40.0% |
| !!! | CATGAGTTTCTGCTGCTTTT+GGG | + | chr8.1:6702975-6702994 | None:intergenic | 40.0% |
| AAACCGTTCAAGAAAGCCTG+TGG | - | chr8.1:6701947-6701966 | MS.gene26508:CDS | 45.0% | |
| AGAAAAATAGACCCAGAGCC+AGG | - | chr8.1:6701831-6701850 | MS.gene26508:intron | 45.0% | |
| AGAGGAAAGGGTGGTTAAGA+TGG | + | chr8.1:6702139-6702158 | None:intergenic | 45.0% | |
| CCAAAAGCAGCAGAAACTCA+TGG | - | chr8.1:6702973-6702992 | MS.gene26508:CDS | 45.0% | |
| CCACAAACCAACGAGGTAAA+TGG | - | chr8.1:6703078-6703097 | MS.gene26508:CDS | 45.0% | |
| CTTCCACAGGCTTTCTTGAA+CGG | + | chr8.1:6701953-6701972 | None:intergenic | 45.0% | |
| GAAAAATAGACCCAGAGCCA+GGG | - | chr8.1:6701832-6701851 | MS.gene26508:intron | 45.0% | |
| GAAGAGGAGCTTATGGTAAG+TGG | + | chr8.1:6702762-6702781 | None:intergenic | 45.0% | |
| GAGGAAAGGGTGGTTAAGAT+GGG | + | chr8.1:6702138-6702157 | None:intergenic | 45.0% | |
| GAGGGTTATGGTAGAGGAAA+GGG | + | chr8.1:6702151-6702170 | None:intergenic | 45.0% | |
| GAGTAGAAGATCAGGAGGAA+TGG | + | chr8.1:6701631-6701650 | None:intergenic | 45.0% | |
| GCTTTCTTCACTGAACCTTC+TGG | - | chr8.1:6702684-6702703 | MS.gene26508:intron | 45.0% | |
| TGCTTCAAAGCTATGAGCCA+CGG | + | chr8.1:6703348-6703367 | None:intergenic | 45.0% | |
| ! | GTGAAAGGCACATGCATAGA+GGG | - | chr8.1:6701922-6701941 | MS.gene26508:intron | 45.0% |
| ! | TGCCACTGAGTTGGAGTAAA+AGG | + | chr8.1:6701558-6701577 | None:intergenic | 45.0% |
| ! | TGTGAAAGGCACATGCATAG+AGG | - | chr8.1:6701921-6701940 | MS.gene26508:intron | 45.0% |
| ! | TTATGGACTGAAAGAGGAGG+TGG | - | chr8.1:6702653-6702672 | MS.gene26508:intron | 45.0% |
| !! | CCATTTACCTCGTTGGTTTG+TGG | + | chr8.1:6703081-6703100 | None:intergenic | 45.0% |
| !!! | CCATGAGTTTCTGCTGCTTT+TGG | + | chr8.1:6702976-6702995 | None:intergenic | 45.0% |
| !!! | ATAAACATTTTAATAAAAAA+AGG | + | chr8.1:6702583-6702602 | None:intergenic | 5.0% |
| AAGTTAGGCCTTGAGGATGG+AGG | + | chr8.1:6702170-6702189 | None:intergenic | 50.0% | |
| ACCATAACCCTCCATCCTCA+AGG | - | chr8.1:6702159-6702178 | MS.gene26508:CDS | 50.0% | |
| AGGATGGAGGGTTATGGTAG+AGG | + | chr8.1:6702157-6702176 | None:intergenic | 50.0% | |
| AGTTAGGCCTTGAGGATGGA+GGG | + | chr8.1:6702169-6702188 | None:intergenic | 50.0% | |
| GAGAAGTTAGGCCTTGAGGA+TGG | + | chr8.1:6702173-6702192 | None:intergenic | 50.0% | |
| GGAGATTGAAAGCTGAGTGG+TGG | + | chr8.1:6703021-6703040 | None:intergenic | 50.0% | |
| GGAGGGTTATGGTAGAGGAA+AGG | + | chr8.1:6702152-6702171 | None:intergenic | 50.0% | |
| GGTTATGGTAGAGGAAAGGG+TGG | + | chr8.1:6702148-6702167 | None:intergenic | 50.0% | |
| TCAAGCTCTTGCCACTGAGT+TGG | + | chr8.1:6701567-6701586 | None:intergenic | 50.0% | |
| ! | TTTGGTGTGGTGCATGCAGT+TGG | - | chr8.1:6701780-6701799 | MS.gene26508:intron | 50.0% |
| !!! | GAGTTTCTGCTGCTTTTGGG+TGG | + | chr8.1:6702972-6702991 | None:intergenic | 50.0% |
| AAATAGACCCAGAGCCAGGG+AGG | - | chr8.1:6701835-6701854 | MS.gene26508:intron | 55.0% | |
| CGACACTGACACATCGCCAT+AGG | - | chr8.1:6703148-6703167 | MS.gene26508:CDS | 55.0% | |
| GCCTTGAGGATGGAGGGTTA+TGG | + | chr8.1:6702163-6702182 | None:intergenic | 55.0% | |
| GCTCTAGTCAGTGTTGTGCC+TGG | - | chr8.1:6703319-6703338 | MS.gene26508:intron | 55.0% | |
| GTGTGGTGCATGCAGTTGGA+TGG | - | chr8.1:6701784-6701803 | MS.gene26508:intron | 55.0% | |
| TCTGTTCTTCTGCACCTCCC+TGG | + | chr8.1:6701852-6701871 | None:intergenic | 55.0% | |
| ! | GGGAGGTGCAGAAGAACAGA+TGG | - | chr8.1:6701852-6701871 | MS.gene26508:intron | 55.0% |
| AGCTATGAGCCACGGACACC+AGG | + | chr8.1:6703340-6703359 | None:intergenic | 60.0% | |
| AGTGTTGTGCCTGGTGTCCG+TGG | - | chr8.1:6703328-6703347 | MS.gene26508:CDS | 60.0% | |
| ! | TTCTGCACCTCCCTGGCTCT+GGG | + | chr8.1:6701845-6701864 | None:intergenic | 60.0% |
| CTTCTGCACCTCCCTGGCTC+TGG | + | chr8.1:6701846-6701865 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6701531 | 6703503 | 6701531 | ID=MS.gene26508 |
| chr8.1 | mRNA | 6701531 | 6703503 | 6701531 | ID=MS.gene26508.t1;Parent=MS.gene26508 |
| chr8.1 | exon | 6703326 | 6703503 | 6703326 | ID=MS.gene26508.t1.exon1;Parent=MS.gene26508.t1 |
| chr8.1 | CDS | 6703326 | 6703503 | 6703326 | ID=cds.MS.gene26508.t1;Parent=MS.gene26508.t1 |
| chr8.1 | exon | 6702764 | 6703235 | 6702764 | ID=MS.gene26508.t1.exon2;Parent=MS.gene26508.t1 |
| chr8.1 | CDS | 6702764 | 6703235 | 6702764 | ID=cds.MS.gene26508.t1;Parent=MS.gene26508.t1 |
| chr8.1 | exon | 6701942 | 6702393 | 6701942 | ID=MS.gene26508.t1.exon3;Parent=MS.gene26508.t1 |
| chr8.1 | CDS | 6701942 | 6702393 | 6701942 | ID=cds.MS.gene26508.t1;Parent=MS.gene26508.t1 |
| chr8.1 | exon | 6701531 | 6701538 | 6701531 | ID=MS.gene26508.t1.exon4;Parent=MS.gene26508.t1 |
| chr8.1 | CDS | 6701531 | 6701538 | 6701531 | ID=cds.MS.gene26508.t1;Parent=MS.gene26508.t1 |
| Gene Sequence |
| Protein sequence |
