Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26721.t1 | XP_003609937.1 | 99.7 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 6.70E-186 | 659.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26721.t1 | Q40134 | 88.3 | 342 | 39 | 1 | 1 | 341 | 1 | 342 | 4.9e-169 | 595.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26721.t1 | G7JS36 | 99.7 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 4.8e-186 | 659.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05124 | MS.gene26721 | 0.805554 | 1.26E-49 | -1.69E-46 |
| MS.gene051914 | MS.gene26721 | 0.805142 | 1.54E-49 | -1.69E-46 |
| MS.gene053173 | MS.gene26721 | 0.824737 | 6.86E-54 | -1.69E-46 |
| MS.gene054018 | MS.gene26721 | 0.807743 | 4.36E-50 | -1.69E-46 |
| MS.gene054633 | MS.gene26721 | 0.809282 | 2.04E-50 | -1.69E-46 |
| MS.gene054662 | MS.gene26721 | 0.813414 | 2.59E-51 | -1.69E-46 |
| MS.gene05640 | MS.gene26721 | 0.814538 | 1.46E-51 | -1.69E-46 |
| MS.gene057367 | MS.gene26721 | 0.820579 | 6.37E-53 | -1.69E-46 |
| MS.gene06093 | MS.gene26721 | 0.810067 | 1.39E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05119 | MS.gene26721 | PPI |
| MS.gene63514 | MS.gene26721 | PPI |
| MS.gene008431 | MS.gene26721 | PPI |
| MS.gene009458 | MS.gene26721 | PPI |
| MS.gene51627 | MS.gene26721 | PPI |
| MS.gene26721 | MS.gene56256 | PPI |
| MS.gene26721 | MS.gene049599 | PPI |
| MS.gene26721 | MS.gene53875 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26721.t1 | MTR_4g124560 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| MS.gene26721.t1 | MTR_1g102670 | 51.746 | 315 | 138 | 2 | 27 | 341 | 11 | 311 | 4.67e-106 | 313 |
| MS.gene26721.t1 | MTR_4g111780 | 30.723 | 332 | 185 | 9 | 42 | 338 | 15 | 336 | 1.66e-30 | 119 |
| MS.gene26721.t1 | MTR_4g024850 | 30.723 | 332 | 185 | 9 | 42 | 338 | 15 | 336 | 4.60e-30 | 117 |
| MS.gene26721.t1 | MTR_2g445230 | 28.938 | 273 | 166 | 7 | 93 | 340 | 11 | 280 | 1.01e-20 | 90.9 |
| MS.gene26721.t1 | MTR_2g093050 | 29.119 | 261 | 151 | 7 | 103 | 336 | 83 | 336 | 6.02e-19 | 87.8 |
| MS.gene26721.t1 | MTR_5g091610 | 41.322 | 121 | 50 | 3 | 169 | 277 | 6 | 117 | 4.47e-17 | 80.5 |
| MS.gene26721.t1 | MTR_4g062540 | 27.386 | 241 | 143 | 8 | 104 | 327 | 89 | 314 | 2.20e-14 | 73.2 |
| MS.gene26721.t1 | MTR_4g062540 | 26.923 | 234 | 146 | 6 | 104 | 327 | 89 | 307 | 3.52e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26721.t1 | AT5G20850 | 87.683 | 341 | 40 | 1 | 1 | 341 | 4 | 342 | 0.0 | 624 |
| MS.gene26721.t1 | AT5G20850 | 88.040 | 301 | 34 | 1 | 1 | 301 | 4 | 302 | 0.0 | 557 |
| MS.gene26721.t1 | AT3G22880 | 53.651 | 315 | 145 | 1 | 27 | 341 | 31 | 344 | 3.56e-116 | 340 |
| MS.gene26721.t1 | AT3G22880 | 53.821 | 301 | 138 | 1 | 27 | 327 | 31 | 330 | 6.28e-111 | 326 |
| MS.gene26721.t1 | AT2G45280 | 31.000 | 300 | 169 | 7 | 42 | 312 | 36 | 326 | 1.21e-25 | 105 |
| MS.gene26721.t1 | AT2G45280 | 32.661 | 248 | 136 | 6 | 87 | 312 | 112 | 350 | 3.46e-25 | 105 |
| MS.gene26721.t1 | AT5G57450 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.57e-24 | 100 |
| MS.gene26721.t1 | AT5G57450 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.57e-24 | 100 |
| MS.gene26721.t1 | AT2G28560 | 29.057 | 265 | 156 | 7 | 103 | 341 | 51 | 309 | 2.35e-20 | 90.9 |
| MS.gene26721.t1 | AT2G28560 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 3.73e-20 | 90.5 |
| MS.gene26721.t1 | AT2G28560 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.11e-20 | 90.5 |
| MS.gene26721.t1 | AT2G28560 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.11e-20 | 90.5 |
| MS.gene26721.t1 | AT2G28560 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.11e-20 | 90.5 |
| MS.gene26721.t1 | AT2G28560 | 30.556 | 180 | 113 | 4 | 103 | 274 | 51 | 226 | 1.11e-15 | 75.9 |
| MS.gene26721.t1 | AT1G07745 | 25.941 | 239 | 154 | 6 | 76 | 306 | 64 | 287 | 1.05e-12 | 68.6 |
| MS.gene26721.t1 | AT1G07745 | 25.941 | 239 | 154 | 6 | 76 | 306 | 46 | 269 | 1.47e-12 | 67.8 |
Find 82 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAATCTCTTCGGTTTCT+TGG | 0.161205 | 8.2:+8785827 | None:intergenic |
| GCCACCAATTGGCTTGGTTT+GGG | 0.257944 | 8.2:+8783202 | None:intergenic |
| GCCAATTGGTGGCAACATTA+TGG | 0.293831 | 8.2:-8783192 | MS.gene26721:CDS |
| GGCTGAAAGCTCCCCTCTTC+CGG | 0.313600 | 8.2:+8783556 | None:intergenic |
| AGTGATTAGTTCTCCTTGTT+TGG | 0.313602 | 8.2:-8783108 | MS.gene26721:CDS |
| TGCCACCAATTGGCTTGGTT+TGG | 0.332160 | 8.2:+8783201 | None:intergenic |
| AGCTGGTAAGCTGGTGCCTA+TGG | 0.346402 | 8.2:-8784953 | MS.gene26721:CDS |
| CGTCAACTTGTGAAACTACT+TGG | 0.353913 | 8.2:+8783246 | None:intergenic |
| GACGGTTCTGCAATGTTTGC+TGG | 0.369464 | 8.2:-8783227 | MS.gene26721:CDS |
| CTAATTTCTGAAGGCTTCTC+AGG | 0.371141 | 8.2:+8783510 | None:intergenic |
| ATTTCGCTAAATGCATTTGC+CGG | 0.371203 | 8.2:+8783534 | None:intergenic |
| AAGAGAGCTTGACAAGATAT+TGG | 0.386237 | 8.2:-8784866 | MS.gene26721:CDS |
| TTTACCCGTAGAACAACTTC+AGG | 0.397476 | 8.2:-8785797 | MS.gene26721:intron |
| GCCATAATGTTGCCACCAAT+TGG | 0.411385 | 8.2:+8783191 | None:intergenic |
| CTCAAGTCGTTGTTGCTCCA+TGG | 0.416061 | 8.2:+8785870 | None:intergenic |
| TTGTATGGTGAATTTCGATC+TGG | 0.418493 | 8.2:-8784705 | MS.gene26721:CDS |
| TAATTGTATTCTCAGGCATC+GGG | 0.449868 | 8.2:-8785606 | MS.gene26721:intron |
| TACGACAGGTTTGGACTGAA+TGG | 0.457584 | 8.2:-8783994 | MS.gene26721:intron |
| CCACCAATTGGCTTGGTTTG+GGG | 0.463690 | 8.2:+8783203 | None:intergenic |
| CAATCAGGTGGAATTGAGAC+GGG | 0.472160 | 8.2:-8784741 | MS.gene26721:intron |
| ACTGAATGGTCCTGATGTAT+TGG | 0.472714 | 8.2:-8783980 | MS.gene26721:CDS |
| AATCTGTTGCTTATACTCCT+AGG | 0.488123 | 8.2:-8785530 | MS.gene26721:CDS |
| GGTTCTATCACCGAGTTGTA+TGG | 0.488506 | 8.2:-8784720 | MS.gene26721:CDS |
| ACAGTGCTACTGCTCTCTAT+AGG | 0.490455 | 8.2:-8783589 | MS.gene26721:CDS |
| GGACCCCAAACCAAGCCAAT+TGG | 0.494568 | 8.2:-8783206 | MS.gene26721:CDS |
| CCACGACAAGGTTAGCTCTC+AGG | 0.496287 | 8.2:-8783160 | MS.gene26721:CDS |
| ATTAAGAAGCTTAAAGATGC+AGG | 0.498423 | 8.2:-8785567 | MS.gene26721:CDS |
| TAAAATCTGAAACCTTGCTT+CGG | 0.499109 | 8.2:+8783079 | None:intergenic |
| TTTATTGACAGCTGGTAAGC+TGG | 0.500060 | 8.2:-8784962 | MS.gene26721:intron |
| AATGTTGCCACCAATTGGCT+TGG | 0.501653 | 8.2:+8783196 | None:intergenic |
| ATTTGCAAAAGATCTTTCCT+AGG | 0.502674 | 8.2:+8785513 | None:intergenic |
| TTCAATGATCTTGTCAACCT+TGG | 0.504239 | 8.2:+8785473 | None:intergenic |
| TGAAGTTGTTCTACGGGTAA+AGG | 0.508750 | 8.2:+8785799 | None:intergenic |
| AGGACCGTGTTGAATCTCTT+CGG | 0.510828 | 8.2:+8785819 | None:intergenic |
| CCTCATCTGCTAATTTCTGA+AGG | 0.511857 | 8.2:+8783501 | None:intergenic |
| GCTGGTAAGCTGGTGCCTAT+GGG | 0.516629 | 8.2:-8784952 | MS.gene26721:CDS |
| CAAGTAGTTTCACAAGTTGA+CGG | 0.519262 | 8.2:-8783245 | MS.gene26721:CDS |
| TAGATGCCGAGGGAACATTT+AGG | 0.520366 | 8.2:-8784116 | MS.gene26721:CDS |
| TTAACCTGAAGTTGTTCTAC+GGG | 0.520860 | 8.2:+8785793 | None:intergenic |
| ACTTGAAGCAGCTTCAATGA+TGG | 0.525271 | 8.2:-8783905 | MS.gene26721:CDS |
| ATTAACCTGAAGTTGTTCTA+CGG | 0.528625 | 8.2:+8785792 | None:intergenic |
| TTTCGCTAAATGCATTTGCC+GGG | 0.529004 | 8.2:+8783535 | None:intergenic |
| CCCCAAACCAAGCCAATTGG+TGG | 0.539489 | 8.2:-8783203 | MS.gene26721:CDS |
| CTTGTCAAGCTCTCTTGACC+CGG | 0.542171 | 8.2:+8784873 | None:intergenic |
| CTTCAATGATGGTGGAAACA+AGG | 0.543376 | 8.2:-8783894 | MS.gene26721:intron |
| TTAGCTCTCAGGAAAGGAAG+AGG | 0.549474 | 8.2:-8783149 | MS.gene26721:CDS |
| TTGTAGTTGCCACTAGATCA+AGG | 0.550547 | 8.2:-8784165 | MS.gene26721:intron |
| TCAATCAGGTGGAATTGAGA+CGG | 0.551223 | 8.2:-8784742 | MS.gene26721:intron |
| TCGATTATTCAGATAACCAC+CGG | 0.554130 | 8.2:-8784892 | MS.gene26721:CDS |
| GCTTCGGCTTCAGCCAAACA+AGG | 0.555538 | 8.2:+8783095 | None:intergenic |
| TGTGTAATTGTAGTTTGGTG+TGG | 0.558015 | 8.2:-8783285 | MS.gene26721:intron |
| CAAAGGTATCAGTGATGCCA+AGG | 0.558029 | 8.2:-8785490 | MS.gene26721:CDS |
| TCACCTCCTCCTTGATCTAG+TGG | 0.567569 | 8.2:+8784156 | None:intergenic |
| CTAGATCAAGGAGGAGGTGA+GGG | 0.569563 | 8.2:-8784153 | MS.gene26721:CDS |
| CCTTCAGAAATTAGCAGATG+AGG | 0.570316 | 8.2:-8783501 | MS.gene26721:intron |
| GAAGAGGGGAGCTTTCAGCC+CGG | 0.571563 | 8.2:-8783553 | MS.gene26721:CDS |
| TAGCTCTCAGGAAAGGAAGA+GGG | 0.571645 | 8.2:-8783148 | MS.gene26721:CDS |
| CCTGAGAGCTAACCTTGTCG+TGG | 0.573304 | 8.2:+8783160 | None:intergenic |
| GTTGACAAGATCATTGAAGC+AGG | 0.573756 | 8.2:-8785468 | MS.gene26721:intron |
| GAGCTTGACAAGATATTGGA+AGG | 0.575499 | 8.2:-8784862 | MS.gene26721:intron |
| AGCTATGTACATAGATGCCG+AGG | 0.576766 | 8.2:-8784127 | MS.gene26721:CDS |
| TGTATGGTGAATTTCGATCT+GGG | 0.581170 | 8.2:-8784704 | MS.gene26721:CDS |
| GACTCTTACAGATAGCAGAT+AGG | 0.586304 | 8.2:-8784086 | MS.gene26721:intron |
| GTTTGGCTGAAGCCGAAGCA+AGG | 0.588117 | 8.2:-8783091 | MS.gene26721:CDS |
| TGAAGCAGCTTCAATGATGG+TGG | 0.599232 | 8.2:-8783902 | MS.gene26721:CDS |
| CTGAGGCCTAAATGTTCCCT+CGG | 0.602051 | 8.2:+8784110 | None:intergenic |
| AGTATAAGCAACAGATTCAA+CGG | 0.607715 | 8.2:+8785536 | None:intergenic |
| GTCAAGCTCTCTTGACCCGG+TGG | 0.607993 | 8.2:+8784876 | None:intergenic |
| ACAAGGTTAGCTCTCAGGAA+AGG | 0.614598 | 8.2:-8783155 | MS.gene26721:CDS |
| TTCTCAGGCATCGGGTATAG+CGG | 0.620888 | 8.2:-8785598 | MS.gene26721:intron |
| TTGCCACTAGATCAAGGAGG+AGG | 0.623636 | 8.2:-8784159 | MS.gene26721:CDS |
| AGCTCTCAGGAAAGGAAGAG+GGG | 0.625477 | 8.2:-8783147 | MS.gene26721:CDS |
| ACTAGATCAAGGAGGAGGTG+AGG | 0.625647 | 8.2:-8784154 | MS.gene26721:CDS |
| CGATTATTCAGATAACCACC+GGG | 0.640229 | 8.2:-8784891 | MS.gene26721:CDS |
| CTAGCGCTAGTAAAACCCAT+AGG | 0.648850 | 8.2:+8784937 | None:intergenic |
| TCGAAATTCACCATACAACT+CGG | 0.653941 | 8.2:+8784710 | None:intergenic |
| TGGCTCATGCAACCACGACA+AGG | 0.656550 | 8.2:-8783172 | MS.gene26721:CDS |
| ATAACACTGATCATCAGTCA+CGG | 0.679517 | 8.2:-8783933 | MS.gene26721:CDS |
| GCTATGTACATAGATGCCGA+GGG | 0.713210 | 8.2:-8784126 | MS.gene26721:CDS |
| GCTATCTGTAAGAGTCGCTG+AGG | 0.720598 | 8.2:+8784093 | None:intergenic |
| GAAACCGAAGAGATTCAACA+CGG | 0.755894 | 8.2:-8785823 | MS.gene26721:CDS |
| TAGTTGCCACTAGATCAAGG+AGG | 0.810196 | 8.2:-8784162 | MS.gene26721:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAATTAGAAATAAT+GGG | + | chr8.2:8783193-8783212 | None:intergenic | 10.0% |
| !! | TAAAAAGAAATTAGAAATAA+TGG | + | chr8.2:8783194-8783213 | None:intergenic | 10.0% |
| !!! | ATTATTTCTAATTTCTTTTT+AGG | - | chr8.2:8783193-8783212 | MS.gene26721:CDS | 10.0% |
| !! | AAAATAACTAAAATAGTCCA+GGG | - | chr8.2:8784559-8784578 | MS.gene26721:intron | 20.0% |
| !! | ACATATAAACATAATCAGTT+TGG | - | chr8.2:8785589-8785608 | MS.gene26721:CDS | 20.0% |
| !! | ATAACCACTTATATGATAAA+TGG | - | chr8.2:8783810-8783829 | MS.gene26721:intron | 20.0% |
| !! | ATAACCATTTATCATATAAG+TGG | + | chr8.2:8783817-8783836 | None:intergenic | 20.0% |
| !! | GTTTGAGTATTTGTATATAT+AGG | - | chr8.2:8784373-8784392 | MS.gene26721:intron | 20.0% |
| !! | TAAGGAACATAAATATTGAA+TGG | + | chr8.2:8784902-8784921 | None:intergenic | 20.0% |
| !!! | AGATATTGAAATTGTTTTTG+AGG | - | chr8.2:8785259-8785278 | MS.gene26721:intron | 20.0% |
| !!! | AGATTTTTTTATACTAGTGA+TGG | - | chr8.2:8785210-8785229 | MS.gene26721:intron | 20.0% |
| !!! | ATAAATACTTTGTTTATGTG+TGG | - | chr8.2:8784092-8784111 | MS.gene26721:CDS | 20.0% |
| !!! | TAAATACTTTGTTTATGTGT+GGG | - | chr8.2:8784093-8784112 | MS.gene26721:CDS | 20.0% |
| !!! | TCACTTTCAATTTTGTTTTA+GGG | - | chr8.2:8783479-8783498 | MS.gene26721:intron | 20.0% |
| !!! | TTCACTTTCAATTTTGTTTT+AGG | - | chr8.2:8783478-8783497 | MS.gene26721:intron | 20.0% |
| !!! | TTTTAATAAGCTCTTTAGAA+TGG | - | chr8.2:8783734-8783753 | MS.gene26721:intron | 20.0% |
| ! | AAATAACTAAAATAGTCCAG+GGG | - | chr8.2:8784560-8784579 | MS.gene26721:intron | 25.0% |
| ! | AACAACGATAATAGTCAATT+GGG | + | chr8.2:8783274-8783293 | None:intergenic | 25.0% |
| ! | AATTACATGAATTGAGTGTT+TGG | + | chr8.2:8783868-8783887 | None:intergenic | 25.0% |
| ! | AATTACTAGGCAATGTTATT+AGG | + | chr8.2:8784716-8784735 | None:intergenic | 25.0% |
| ! | ATAAAGCCATATTATAACCT+TGG | + | chr8.2:8785100-8785119 | None:intergenic | 25.0% |
| ! | CAAAATAACTAAAATAGTCC+AGG | - | chr8.2:8784558-8784577 | MS.gene26721:intron | 25.0% |
| ! | GATTAACATAATCAATTGTG+AGG | - | chr8.2:8783666-8783685 | MS.gene26721:intron | 25.0% |
| ! | TGTATATATAGGAGAATACA+AGG | - | chr8.2:8784384-8784403 | MS.gene26721:intron | 25.0% |
| ! | TTGAGAAAATAAGACAGAAT+AGG | + | chr8.2:8784500-8784519 | None:intergenic | 25.0% |
| ! | TTGATTGTGTAATTGTAGTT+TGG | - | chr8.2:8785627-8785646 | MS.gene26721:intron | 25.0% |
| ! | TTGCTTAGGATAGTAAATTT+AGG | - | chr8.2:8785542-8785561 | MS.gene26721:CDS | 25.0% |
| !! | AAACAACATAAGTTCTTTTC+AGG | - | chr8.2:8783618-8783637 | MS.gene26721:intron | 25.0% |
| !! | AAAGATCTTTTGCAAATCAA+AGG | - | chr8.2:8783410-8783429 | MS.gene26721:intron | 25.0% |
| !! | AACAACATAAGTTCTTTTCA+GGG | - | chr8.2:8783619-8783638 | MS.gene26721:intron | 25.0% |
| !! | AAGTGCTTTATTAAGTTGTT+TGG | - | chr8.2:8783842-8783861 | MS.gene26721:intron | 25.0% |
| !! | CTAAGTTGAAAAAAGCTTAT+TGG | + | chr8.2:8783582-8783601 | None:intergenic | 25.0% |
| !!! | AAGCTTTTTTCAACTTAGTA+GGG | - | chr8.2:8783584-8783603 | MS.gene26721:CDS | 25.0% |
| !!! | ACTTATGTTGTTTTCATGTA+AGG | + | chr8.2:8783611-8783630 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTAGGGTCTATT+TGG | - | chr8.2:8783488-8783507 | MS.gene26721:intron | 25.0% |
| !!! | CTGGACTATTTTAGTTATTT+TGG | + | chr8.2:8784560-8784579 | None:intergenic | 25.0% |
| !!! | TAAGCTTTTTTCAACTTAGT+AGG | - | chr8.2:8783583-8783602 | MS.gene26721:CDS | 25.0% |
| !!! | TACAGTTCATTCAAGTTTTT+GGG | - | chr8.2:8784532-8784551 | MS.gene26721:intron | 25.0% |
| !!! | TATATATTGCTGTTTCAATC+AGG | - | chr8.2:8784161-8784180 | MS.gene26721:CDS | 25.0% |
| !!! | TTACAGTTCATTCAAGTTTT+TGG | - | chr8.2:8784531-8784550 | MS.gene26721:intron | 25.0% |
| !!! | TTTTTTGCACTTTGAACAAT+CGG | + | chr8.2:8783224-8783243 | None:intergenic | 25.0% |
| AAATCTTACAATACAACGCA+AGG | + | chr8.2:8785196-8785215 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | + | chr8.2:8783716-8783735 | None:intergenic | 30.0% | |
| AATGGACATTTAACAGAAAC+AGG | + | chr8.2:8784884-8784903 | None:intergenic | 30.0% | |
| AGCTGATTAAGATATTGCTT+AGG | - | chr8.2:8785528-8785547 | MS.gene26721:CDS | 30.0% | |
| AGTATAAGCAACAGATTCAA+CGG | + | chr8.2:8783384-8783403 | None:intergenic | 30.0% | |
| ATTAACCTGAAGTTGTTCTA+CGG | + | chr8.2:8783128-8783147 | None:intergenic | 30.0% | |
| ATTAAGAAGCTTAAAGATGC+AGG | - | chr8.2:8783350-8783369 | MS.gene26721:intron | 30.0% | |
| ATTGTAGAAGAGGAAATTCT+TGG | - | chr8.2:8784459-8784478 | MS.gene26721:intron | 30.0% | |
| ATTTGCAAAAGATCTTTCCT+AGG | + | chr8.2:8783407-8783426 | None:intergenic | 30.0% | |
| CAAACAGAGCCTAAAAATAA+AGG | + | chr8.2:8783646-8783665 | None:intergenic | 30.0% | |
| CAACAACGATAATAGTCAAT+TGG | + | chr8.2:8783275-8783294 | None:intergenic | 30.0% | |
| CAACGATGAATTGAATTACT+AGG | + | chr8.2:8784729-8784748 | None:intergenic | 30.0% | |
| CAATTGCCAAGGTTATAATA+TGG | - | chr8.2:8785091-8785110 | MS.gene26721:intron | 30.0% | |
| CTGTGTTTAATTGTATTCTC+AGG | - | chr8.2:8783304-8783323 | MS.gene26721:intron | 30.0% | |
| TCTAAACAATACTGAGCAAA+AGG | + | chr8.2:8785066-8785085 | None:intergenic | 30.0% | |
| TTAATACCCATCATTGATGA+AGG | - | chr8.2:8783901-8783920 | MS.gene26721:CDS | 30.0% | |
| TTAATTGTATTCTCAGGCAT+CGG | - | chr8.2:8783310-8783329 | MS.gene26721:intron | 30.0% | |
| TTTATGTTCCTTAATACGAC+AGG | - | chr8.2:8784909-8784928 | MS.gene26721:CDS | 30.0% | |
| TTTGTTTGTTTATTGACAGC+TGG | - | chr8.2:8783947-8783966 | MS.gene26721:CDS | 30.0% | |
| ! | TAAAATCTGAAACCTTGCTT+CGG | + | chr8.2:8785841-8785860 | None:intergenic | 30.0% |
| ! | TAGAACAACTTCAGGTTAAT+GGG | - | chr8.2:8783128-8783147 | MS.gene26721:CDS | 30.0% |
| ! | TTTTTGCACTTTGAACAATC+GGG | + | chr8.2:8783223-8783242 | None:intergenic | 30.0% |
| !!! | CTTTATTTTTAGGCTCTGTT+TGG | - | chr8.2:8783644-8783663 | MS.gene26721:intron | 30.0% |
| !!! | TTTCAGGGTCCTTTATTTTT+AGG | - | chr8.2:8783634-8783653 | MS.gene26721:intron | 30.0% |
| !!! | TTTTGAGGCTTACATTTTGA+TGG | - | chr8.2:8785274-8785293 | MS.gene26721:intron | 30.0% |
| AAGAGAGCTTGACAAGATAT+TGG | - | chr8.2:8784051-8784070 | MS.gene26721:intron | 35.0% | |
| ACAACGCAAGGCATAATAAA+TGG | + | chr8.2:8785184-8785203 | None:intergenic | 35.0% | |
| AGAAGACCTTCATCAATGAT+GGG | + | chr8.2:8783910-8783929 | None:intergenic | 35.0% | |
| AGCATTATTACCAGCTAAAC+AGG | - | chr8.2:8785141-8785160 | MS.gene26721:intron | 35.0% | |
| AGGGAAACAAACAACATACT+TGG | + | chr8.2:8784274-8784293 | None:intergenic | 35.0% | |
| AGTGATGGTTGATCTGAATT+TGG | - | chr8.2:8785225-8785244 | MS.gene26721:intron | 35.0% | |
| ATAACACTGATCATCAGTCA+CGG | - | chr8.2:8784984-8785003 | MS.gene26721:intron | 35.0% | |
| ATGTCTATTTACATTTCCCC+TGG | + | chr8.2:8784579-8784598 | None:intergenic | 35.0% | |
| ATTTCGCTAAATGCATTTGC+CGG | + | chr8.2:8785386-8785405 | None:intergenic | 35.0% | |
| CTCCATCATCAGAGAAAAAA+GGG | + | chr8.2:8783249-8783268 | None:intergenic | 35.0% | |
| TAATTGTATTCTCAGGCATC+GGG | - | chr8.2:8783311-8783330 | MS.gene26721:intron | 35.0% | |
| TAGTGACTCTATTGTAGAAG+AGG | - | chr8.2:8784449-8784468 | MS.gene26721:intron | 35.0% | |
| TCGAAATTCACCATACAACT+CGG | + | chr8.2:8784210-8784229 | None:intergenic | 35.0% | |
| TCGATTATTCAGATAACCAC+CGG | - | chr8.2:8784025-8784044 | MS.gene26721:intron | 35.0% | |
| TGCTCAGTATTGTTTAGATC+TGG | - | chr8.2:8785068-8785087 | MS.gene26721:intron | 35.0% | |
| TGTATGGTGAATTTCGATCT+GGG | - | chr8.2:8784213-8784232 | MS.gene26721:intron | 35.0% | |
| TGTGCATTACAATAGTGACA+TGG | + | chr8.2:8785450-8785469 | None:intergenic | 35.0% | |
| TTAACCTGAAGTTGTTCTAC+GGG | + | chr8.2:8783127-8783146 | None:intergenic | 35.0% | |
| TTCAATGATCTTGTCAACCT+TGG | + | chr8.2:8783447-8783466 | None:intergenic | 35.0% | |
| TTGACAAGATATTGGAAGGT+TGG | - | chr8.2:8784059-8784078 | MS.gene26721:intron | 35.0% | |
| TTGTATGGTGAATTTCGATC+TGG | - | chr8.2:8784212-8784231 | MS.gene26721:intron | 35.0% | |
| ! | AAACAAGGTATGACTTTTGC+TGG | - | chr8.2:8785038-8785057 | MS.gene26721:intron | 35.0% |
| ! | AATCTGTTGCTTATACTCCT+AGG | - | chr8.2:8783387-8783406 | MS.gene26721:intron | 35.0% |
| ! | AGTGATTAGTTCTCCTTGTT+TGG | - | chr8.2:8785809-8785828 | MS.gene26721:CDS | 35.0% |
| ! | CAAGTAGTTTCACAAGTTGA+CGG | - | chr8.2:8785672-8785691 | MS.gene26721:intron | 35.0% |
| ! | CTCTATAGGACAGATTTTTC+CGG | - | chr8.2:8785342-8785361 | MS.gene26721:intron | 35.0% |
| ! | GAAGCAAGGTTTCAGATTTT+AGG | - | chr8.2:8785840-8785859 | MS.gene26721:CDS | 35.0% |
| ! | GTAGAACAACTTCAGGTTAA+TGG | - | chr8.2:8783127-8783146 | MS.gene26721:CDS | 35.0% |
| ! | TGTGTAATTGTAGTTTGGTG+TGG | - | chr8.2:8785632-8785651 | MS.gene26721:intron | 35.0% |
| !! | ACAAGAGGTATTGACACAAA+AGG | + | chr8.2:8784294-8784313 | None:intergenic | 35.0% |
| !! | ATATTGCTGTTTCAATCAGG+TGG | - | chr8.2:8784164-8784183 | MS.gene26721:intron | 35.0% |
| !! | CAAGAGGTATTGACACAAAA+GGG | + | chr8.2:8784293-8784312 | None:intergenic | 35.0% |
| !! | CATTTTGATGGCTTATATGC+AGG | - | chr8.2:8785286-8785305 | MS.gene26721:intron | 35.0% |
| !!! | AACCCTTTTTTCTCTGATGA+TGG | - | chr8.2:8783244-8783263 | MS.gene26721:CDS | 35.0% |
| ACTGAATGGTCCTGATGTAT+TGG | - | chr8.2:8784937-8784956 | MS.gene26721:CDS | 40.0% | |
| ACTTGAAGCAGCTTCAATGA+TGG | - | chr8.2:8785012-8785031 | MS.gene26721:intron | 40.0% | |
| AGTCCAAACCTGTCGTATTA+AGG | + | chr8.2:8784920-8784939 | None:intergenic | 40.0% | |
| CAGAAGACCTTCATCAATGA+TGG | + | chr8.2:8783911-8783930 | None:intergenic | 40.0% | |
| CCTCATCTGCTAATTTCTGA+AGG | + | chr8.2:8785419-8785438 | None:intergenic | 40.0% | |
| CCTCCATCATCAGAGAAAAA+AGG | + | chr8.2:8783250-8783269 | None:intergenic | 40.0% | |
| CCTTCAGAAATTAGCAGATG+AGG | - | chr8.2:8785416-8785435 | MS.gene26721:intron | 40.0% | |
| CGATTATTCAGATAACCACC+GGG | - | chr8.2:8784026-8784045 | MS.gene26721:intron | 40.0% | |
| CGTCAACTTGTGAAACTACT+TGG | + | chr8.2:8785674-8785693 | None:intergenic | 40.0% | |
| GAAACCGAAGAGATTCAACA+CGG | - | chr8.2:8783094-8783113 | MS.gene26721:CDS | 40.0% | |
| GACTCTTACAGATAGCAGAT+AGG | - | chr8.2:8784831-8784850 | MS.gene26721:intron | 40.0% | |
| GAGCTTGACAAGATATTGGA+AGG | - | chr8.2:8784055-8784074 | MS.gene26721:intron | 40.0% | |
| GTAGAAGAGGAAATTCTTGG+AGG | - | chr8.2:8784462-8784481 | MS.gene26721:intron | 40.0% | |
| GTTCCTTAATACGACAGGTT+TGG | - | chr8.2:8784914-8784933 | MS.gene26721:CDS | 40.0% | |
| GTTGAATCTCTTCGGTTTCT+TGG | + | chr8.2:8783093-8783112 | None:intergenic | 40.0% | |
| GTTGACAAGATCATTGAAGC+AGG | - | chr8.2:8783449-8783468 | MS.gene26721:intron | 40.0% | |
| TAAAACCTAGCCTGTTTAGC+TGG | + | chr8.2:8785154-8785173 | None:intergenic | 40.0% | |
| TATTACCAGCTAAACAGGCT+AGG | - | chr8.2:8785146-8785165 | MS.gene26721:intron | 40.0% | |
| TCAATCAGGTGGAATTGAGA+CGG | - | chr8.2:8784175-8784194 | MS.gene26721:intron | 40.0% | |
| TCTCCTAACAAGTTACCACT+TGG | + | chr8.2:8784331-8784350 | None:intergenic | 40.0% | |
| TGAAGTTGTTCTACGGGTAA+AGG | + | chr8.2:8783121-8783140 | None:intergenic | 40.0% | |
| TTCTAGTGCTTTCTACCAAG+TGG | - | chr8.2:8784313-8784332 | MS.gene26721:intron | 40.0% | |
| TTGTAGTTGCCACTAGATCA+AGG | - | chr8.2:8784752-8784771 | MS.gene26721:intron | 40.0% | |
| TTTACCCGTAGAACAACTTC+AGG | - | chr8.2:8783120-8783139 | MS.gene26721:CDS | 40.0% | |
| TTTAGATCTGGCAATTGCCA+AGG | - | chr8.2:8785080-8785099 | MS.gene26721:intron | 40.0% | |
| TTTATTGACAGCTGGTAAGC+TGG | - | chr8.2:8783955-8783974 | MS.gene26721:CDS | 40.0% | |
| TTTCGCTAAATGCATTTGCC+GGG | + | chr8.2:8785385-8785404 | None:intergenic | 40.0% | |
| ! | AGGTTTCAGATTTTAGGCGA+AGG | - | chr8.2:8785846-8785865 | MS.gene26721:CDS | 40.0% |
| ! | CTAATTTCTGAAGGCTTCTC+AGG | + | chr8.2:8785410-8785429 | None:intergenic | 40.0% |
| ! | GCGACATTTTCCAATACATC+AGG | + | chr8.2:8784950-8784969 | None:intergenic | 40.0% |
| ! | GGTTTCAGATTTTAGGCGAA+GGG | - | chr8.2:8785847-8785866 | MS.gene26721:CDS | 40.0% |
| ! | GTTTCAGATTTTAGGCGAAG+GGG | - | chr8.2:8785848-8785867 | MS.gene26721:CDS | 40.0% |
| !! | CTACCAAGTGGTAACTTGTT+AGG | - | chr8.2:8784325-8784344 | MS.gene26721:intron | 40.0% |
| !! | CTTCAATGATGGTGGAAACA+AGG | - | chr8.2:8785023-8785042 | MS.gene26721:intron | 40.0% |
| !! | GTAGAAAGCACTAGAACAAG+AGG | + | chr8.2:8784309-8784328 | None:intergenic | 40.0% |
| !!! | CCTTTTTTCTCTGATGATGG+AGG | - | chr8.2:8783247-8783266 | MS.gene26721:CDS | 40.0% |
| AATGTTGCCACCAATTGGCT+TGG | + | chr8.2:8785724-8785743 | None:intergenic | 45.0% | |
| AGCTATGTACATAGATGCCG+AGG | - | chr8.2:8784790-8784809 | MS.gene26721:intron | 45.0% | |
| AGGACCGTGTTGAATCTCTT+CGG | + | chr8.2:8783101-8783120 | None:intergenic | 45.0% | |
| ATGAAGGTCTTCTGAGTCTG+TGG | - | chr8.2:8783917-8783936 | MS.gene26721:CDS | 45.0% | |
| CAATCAGGTGGAATTGAGAC+GGG | - | chr8.2:8784176-8784195 | MS.gene26721:intron | 45.0% | |
| CTAGCGCTAGTAAAACCCAT+AGG | + | chr8.2:8783983-8784002 | None:intergenic | 45.0% | |
| GCCATAATGTTGCCACCAAT+TGG | + | chr8.2:8785729-8785748 | None:intergenic | 45.0% | |
| GCTATGTACATAGATGCCGA+GGG | - | chr8.2:8784791-8784810 | MS.gene26721:intron | 45.0% | |
| GGTTCTATCACCGAGTTGTA+TGG | - | chr8.2:8784197-8784216 | MS.gene26721:intron | 45.0% | |
| TACGACAGGTTTGGACTGAA+TGG | - | chr8.2:8784923-8784942 | MS.gene26721:CDS | 45.0% | |
| TAGATGCCGAGGGAACATTT+AGG | - | chr8.2:8784801-8784820 | MS.gene26721:intron | 45.0% | |
| TAGCTCTCAGGAAAGGAAGA+GGG | - | chr8.2:8785769-8785788 | MS.gene26721:intron | 45.0% | |
| TAGTTGCCACTAGATCAAGG+AGG | - | chr8.2:8784755-8784774 | MS.gene26721:intron | 45.0% | |
| TGAAGCAGCTTCAATGATGG+TGG | - | chr8.2:8785015-8785034 | MS.gene26721:intron | 45.0% | |
| ! | ACAAGGTTAGCTCTCAGGAA+AGG | - | chr8.2:8785762-8785781 | MS.gene26721:intron | 45.0% |
| ! | ACAGTGCTACTGCTCTCTAT+AGG | - | chr8.2:8785328-8785347 | MS.gene26721:intron | 45.0% |
| ! | AGGACAGATTTTTCCGGAAG+AGG | - | chr8.2:8785348-8785367 | MS.gene26721:intron | 45.0% |
| ! | GACAGATTTTTCCGGAAGAG+GGG | - | chr8.2:8785350-8785369 | MS.gene26721:intron | 45.0% |
| ! | GATTTTAGGCGAAGGGGTTT+CGG | - | chr8.2:8785854-8785873 | MS.gene26721:CDS | 45.0% |
| ! | GCCAATTGGTGGCAACATTA+TGG | - | chr8.2:8785725-8785744 | MS.gene26721:intron | 45.0% |
| ! | GGACAGATTTTTCCGGAAGA+GGG | - | chr8.2:8785349-8785368 | MS.gene26721:intron | 45.0% |
| ! | TTAGCTCTCAGGAAAGGAAG+AGG | - | chr8.2:8785768-8785787 | MS.gene26721:intron | 45.0% |
| !! | CAAAGGTATCAGTGATGCCA+AGG | - | chr8.2:8783427-8783446 | MS.gene26721:intron | 45.0% |
| ACTAGATCAAGGAGGAGGTG+AGG | - | chr8.2:8784763-8784782 | MS.gene26721:intron | 50.0% | |
| AGCTCTCAGGAAAGGAAGAG+GGG | - | chr8.2:8785770-8785789 | MS.gene26721:intron | 50.0% | |
| CTAGATCAAGGAGGAGGTGA+GGG | - | chr8.2:8784764-8784783 | MS.gene26721:intron | 50.0% | |
| CTGAGGCCTAAATGTTCCCT+CGG | + | chr8.2:8784810-8784829 | None:intergenic | 50.0% | |
| CTTGTCAAGCTCTCTTGACC+CGG | + | chr8.2:8784047-8784066 | None:intergenic | 50.0% | |
| GACGGTTCTGCAATGTTTGC+TGG | - | chr8.2:8785690-8785709 | MS.gene26721:intron | 50.0% | |
| GCTATCTGTAAGAGTCGCTG+AGG | + | chr8.2:8784827-8784846 | None:intergenic | 50.0% | |
| TCACCTCCTCCTTGATCTAG+TGG | + | chr8.2:8784764-8784783 | None:intergenic | 50.0% | |
| TTGCCACTAGATCAAGGAGG+AGG | - | chr8.2:8784758-8784777 | MS.gene26721:intron | 50.0% | |
| !! | CCACCAATTGGCTTGGTTTG+GGG | + | chr8.2:8785717-8785736 | None:intergenic | 50.0% |
| !! | GCCACCAATTGGCTTGGTTT+GGG | + | chr8.2:8785718-8785737 | None:intergenic | 50.0% |
| !! | TGCCACCAATTGGCTTGGTT+TGG | + | chr8.2:8785719-8785738 | None:intergenic | 50.0% |
| !! | TTCTCAGGCATCGGGTATAG+CGG | - | chr8.2:8783319-8783338 | MS.gene26721:intron | 50.0% |
| AGCTGGTAAGCTGGTGCCTA+TGG | - | chr8.2:8783964-8783983 | MS.gene26721:CDS | 55.0% | |
| CCCCAAACCAAGCCAATTGG+TGG | - | chr8.2:8785714-8785733 | MS.gene26721:intron | 55.0% | |
| CCTGAGAGCTAACCTTGTCG+TGG | + | chr8.2:8785760-8785779 | None:intergenic | 55.0% | |
| GCTGGTAAGCTGGTGCCTAT+GGG | - | chr8.2:8783965-8783984 | MS.gene26721:CDS | 55.0% | |
| GCTTCGGCTTCAGCCAAACA+AGG | + | chr8.2:8785825-8785844 | None:intergenic | 55.0% | |
| GGACCCCAAACCAAGCCAAT+TGG | - | chr8.2:8785711-8785730 | MS.gene26721:intron | 55.0% | |
| GTTTGGCTGAAGCCGAAGCA+AGG | - | chr8.2:8785826-8785845 | MS.gene26721:CDS | 55.0% | |
| TGGCTCATGCAACCACGACA+AGG | - | chr8.2:8785745-8785764 | MS.gene26721:intron | 55.0% | |
| ! | CCACGACAAGGTTAGCTCTC+AGG | - | chr8.2:8785757-8785776 | MS.gene26721:intron | 55.0% |
| GAAGAGGGGAGCTTTCAGCC+CGG | - | chr8.2:8785364-8785383 | MS.gene26721:intron | 60.0% | |
| GGCTGAAAGCTCCCCTCTTC+CGG | + | chr8.2:8785364-8785383 | None:intergenic | 60.0% | |
| GTCAAGCTCTCTTGACCCGG+TGG | + | chr8.2:8784044-8784063 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 8783049 | 8785890 | 8783049 | ID=MS.gene26721 |
| chr8.2 | mRNA | 8783049 | 8785890 | 8783049 | ID=MS.gene26721.t1;Parent=MS.gene26721 |
| chr8.2 | exon | 8785798 | 8785890 | 8785798 | ID=MS.gene26721.t1.exon1;Parent=MS.gene26721.t1 |
| chr8.2 | CDS | 8785798 | 8785890 | 8785798 | ID=cds.MS.gene26721.t1;Parent=MS.gene26721.t1 |
| chr8.2 | exon | 8785469 | 8785613 | 8785469 | ID=MS.gene26721.t1.exon2;Parent=MS.gene26721.t1 |
| chr8.2 | CDS | 8785469 | 8785613 | 8785469 | ID=cds.MS.gene26721.t1;Parent=MS.gene26721.t1 |
| chr8.2 | exon | 8784863 | 8784973 | 8784863 | ID=MS.gene26721.t1.exon3;Parent=MS.gene26721.t1 |
| chr8.2 | CDS | 8784863 | 8784973 | 8784863 | ID=cds.MS.gene26721.t1;Parent=MS.gene26721.t1 |
| chr8.2 | exon | 8784665 | 8784756 | 8784665 | ID=MS.gene26721.t1.exon4;Parent=MS.gene26721.t1 |
| chr8.2 | CDS | 8784665 | 8784756 | 8784665 | ID=cds.MS.gene26721.t1;Parent=MS.gene26721.t1 |
| chr8.2 | exon | 8784087 | 8784181 | 8784087 | ID=MS.gene26721.t1.exon5;Parent=MS.gene26721.t1 |
| chr8.2 | CDS | 8784087 | 8784181 | 8784087 | ID=cds.MS.gene26721.t1;Parent=MS.gene26721.t1 |
| chr8.2 | exon | 8783895 | 8784008 | 8783895 | ID=MS.gene26721.t1.exon6;Parent=MS.gene26721.t1 |
| chr8.2 | CDS | 8783895 | 8784008 | 8783895 | ID=cds.MS.gene26721.t1;Parent=MS.gene26721.t1 |
| chr8.2 | exon | 8783502 | 8783631 | 8783502 | ID=MS.gene26721.t1.exon7;Parent=MS.gene26721.t1 |
| chr8.2 | CDS | 8783502 | 8783631 | 8783502 | ID=cds.MS.gene26721.t1;Parent=MS.gene26721.t1 |
| chr8.2 | exon | 8783049 | 8783294 | 8783049 | ID=MS.gene26721.t1.exon8;Parent=MS.gene26721.t1 |
| chr8.2 | CDS | 8783049 | 8783294 | 8783049 | ID=cds.MS.gene26721.t1;Parent=MS.gene26721.t1 |
| Gene Sequence |
| Protein sequence |
