AlfalfaGEDB | MS.gene26874

M. sativa cultivar XinJiangDaYe / MS.gene26874

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF14223.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26874.t1	XP_018459315.1	46.8	340	156	6	1	338	1	317	7.00E-66	261.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26874.t1	A0A2N9I863	41.8	354	172	8	1	339	1	335	2.6e-62	248.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049378	MS.gene26874	0.838046	3.63E-57	-1.69E-46
MS.gene049669	MS.gene26874	0.808602	2.86E-50	-1.69E-46
MS.gene050226	MS.gene26874	0.808821	2.57E-50	-1.69E-46
MS.gene050227	MS.gene26874	0.829427	5.18E-55	-1.69E-46
MS.gene050228	MS.gene26874	0.829138	6.09E-55	-1.69E-46
MS.gene050442	MS.gene26874	0.807494	4.92E-50	-1.69E-46
MS.gene050623	MS.gene26874	-0.806011	1.01E-49	-1.69E-46
MS.gene050719	MS.gene26874	0.80284	4.63E-49	-1.69E-46
MS.gene050721	MS.gene26874	0.801055	1.08E-48	-1.69E-46
MS.gene050780	MS.gene26874	0.802456	5.56E-49	-1.69E-46

Showing 1 to 10 of 21 entries

Previous1 2 3Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26874.t1	MTR_7g062720	40.541	148	80	3	1	146	1	142	5.04e-31	115
MS.gene26874.t1	MTR_4g037355	40.441	136	61	4	155	290	1	116	1.14e-21	89.7
MS.gene26874.t1	MTR_5g061150	35.354	99	64	0	52	150	38	136	4.24e-18	80.1
MS.gene26874.t1	MTR_4g112730	57.971	69	28	1	143	211	2	69	8.40e-18	77.8

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 60 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCCCAAGATCTTAT+GGG	0.458748	1.4:-80091924	MS.gene26874:CDS
AAAATCAGCAGCCTCAAGAC+AGG	0.562896	1.4:+80091163	None:intergenic
AAAGTTGTGGCGTTTATTTC+AGG	0.203868	1.4:+80091551	None:intergenic
AACCATCAGTTGCGTCCTAC+AGG	0.459311	1.4:-80091587	MS.gene26874:CDS
AATCGCCAAAGAGGACGTGG+TGG	0.698905	1.4:-80091506	MS.gene26874:CDS
AATCTGTGGATGGAAAGGAA+AGG	0.653361	1.4:-80091226	MS.gene26874:CDS
AATTGAGTATCTTGCATGTG+AGG	0.565013	1.4:-80092077	MS.gene26874:CDS
ACAAAATTAAGGCAAGATTT+GGG	0.416566	1.4:-80091901	MS.gene26874:CDS
ACCATCATCATGATTTCTAG+AGG	0.616492	1.4:+80091325	None:intergenic
ACGCCCTTGATTAAAAGTTG+TGG	0.608515	1.4:+80091538	None:intergenic

Showing 1 to 10 of 60 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATCCCAAGATCTTAT+GGG	-	chr1.4:80091363-80091382	MS.gene26874:CDS	30.0%
AACAAAAATCATCAGGGTAA+AGG	-	chr1.4:80091919-80091938	MS.gene26874:CDS	30.0%
CCAATCAAACAAAAATCATC+AGG	-	chr1.4:80091912-80091931	MS.gene26874:CDS	30.0%
GAAGAGGTTATATGAATTAC+AGG	-	chr1.4:80091875-80091894	MS.gene26874:CDS	30.0%
GACAAAATTAAGGCAAGATT+TGG	-	chr1.4:80091385-80091404	MS.gene26874:CDS	30.0%
GATCTTATGGGACAAAATTA+AGG	-	chr1.4:80091375-80091394	MS.gene26874:CDS	30.0%
TGGATCAATGGAACAAATTA+AGG	-	chr1.4:80091440-80091459	MS.gene26874:CDS	30.0%
TGGCAAAACTATAACTGAAA+AGG	-	chr1.4:80091534-80091553	MS.gene26874:CDS	30.0%
TTCCATTGATCCATTAATGA+GGG	+	chr1.4:80091433-80091452	None:intergenic	30.0%
TTGTGCAATAATTTGATGCA+TGG	+	chr1.4:80091503-80091522	None:intergenic	30.0%

Showing 1 to 10 of 90 entries

Previous1 2 3 4 5…9Next

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	80091136	80092173	80091136	ID=MS.gene26874
chr1.4	mRNA	80091136	80092173	80091136	ID=MS.gene26874.t1;Parent=MS.gene26874
chr1.4	exon	80091136	80092173	80091136	ID=MS.gene26874.t1.exon1;Parent=MS.gene26874.t1
chr1.4	CDS	80091136	80092173	80091136	ID=cds.MS.gene26874.t1;Parent=MS.gene26874.t1

Gene Sequence

>MS.gene26874

ATGTCAAATGTTAAGCATCAATTCAAAATTTTAAGCATAACTGGCGACAACTACATAACCTGGAACAACAACTTAATTGAGTATCTTGCATGTGAGGGACTCGATAAGATTCTTGAGGGAGAAGATTTGGGAGATGTCCCAGAGGAATTGGCAAAGAAAAAATCAAAAGTAAATCGTATAATCAAGCACCACATTGATGATGGATTACAAACAGAGTATTCAAATGCAAAAGATCCCAAGATCTTATGGGACAAAATTAAGGCAAGATTTGGGCATCAGAAGAAAGTCTTATTGCCCTCATTAATGGATCAATGGAACAAATTAAGGTTCCAAGATTATAAAACTGTTGTTGCATATAACTCTGCCATGCATCAAATTATTGCACAATTAGAATTTTGTGGCAAAACTATAACTGAAAAGGAAAAGTTGGAGAAAACATTCTCAACTTTCCATGCATCTCAAGTGATATTGCAACAACAATATAGAATGAGAGAATTTACTGAATACTCTGATTTGGTTGCAGCCCTTCTAGTGGCTGAACAAAATAACGAGCTGCTCATTAAAAACCATCAGTTGCGTCCTACAGGAACAATGTCGTATCCTGAAATAAACGCCACAACTTTTAATCAAGGGCGTGGTGGTTATAATCGCCAAAGAGGACGTGGTGGCTATGCTCGTTTTGGTGGTCGTGGACGAGGTAGAAATCATGGTCGAAACCATTTTCGTGGTGGAGGTCGTGGAAGAGGTTATATGAATTACAGGCCTCTCAAATATGACCAATCAAACAAAAATCATCAGGGTAAAGGTAAAAACATCCAGGAAGGTCCCTCTAGAAATCATGATGATGGTTGTTATAGATGCGGAAAGAAAGGCCATTGGGCTAAAACATGCAGGACACCAGAGTATCTATGTAAAAGATACAAAGAATCTGTGGATGGAAAGGAAAGGGAAGTTAATTTTAATGAAATTGAACCAAAGAATGACACTACCTGTCTTGAGGCTGCTGATTTTGTTGAAGGAGATTTTAATATGGATTAA

Protein sequence

>MS.gene26874.t1

MSNVKHQFKILSITGDNYITWNNNLIEYLACEGLDKILEGEDLGDVPEELAKKKSKVNRIIKHHIDDGLQTEYSNAKDPKILWDKIKARFGHQKKVLLPSLMDQWNKLRFQDYKTVVAYNSAMHQIIAQLEFCGKTITEKEKLEKTFSTFHASQVILQQQYRMREFTEYSDLVAALLVAEQNNELLIKNHQLRPTGTMSYPEINATTFNQGRGGYNRQRGRGGYARFGGRGRGRNHGRNHFRGGGRGRGYMNYRPLKYDQSNKNHQGKGKNIQEGPSRNHDDGCYRCGKKGHWAKTCRTPEYLCKRYKESVDGKEREVNFNEIEPKNDTTCLEAADFVEGDFNMD