Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27228.t1 | XP_003629131.2 | 90.5 | 158 | 15 | 0 | 1 | 158 | 2 | 159 | 3.70E-71 | 277.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27228.t1 | G7L9D9 | 90.5 | 158 | 15 | 0 | 1 | 158 | 2 | 159 | 2.6e-71 | 277.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052242 | MS.gene27228 | -0.821602 | 3.70E-53 | -1.69E-46 |
| MS.gene052818 | MS.gene27228 | -0.818344 | 2.06E-52 | -1.69E-46 |
| MS.gene053045 | MS.gene27228 | 0.8152 | 1.04E-51 | -1.69E-46 |
| MS.gene053340 | MS.gene27228 | 0.813782 | 2.15E-51 | -1.69E-46 |
| MS.gene053677 | MS.gene27228 | 0.814388 | 1.58E-51 | -1.69E-46 |
| MS.gene054222 | MS.gene27228 | 0.802786 | 4.75E-49 | -1.69E-46 |
| MS.gene056764 | MS.gene27228 | 0.821935 | 3.10E-53 | -1.69E-46 |
| MS.gene057451 | MS.gene27228 | -0.800829 | 1.20E-48 | -1.69E-46 |
| MS.gene057452 | MS.gene27228 | -0.832357 | 9.90E-56 | -1.69E-46 |
| MS.gene057999 | MS.gene27228 | 0.824393 | 8.27E-54 | -1.69E-46 |
| MS.gene059719 | MS.gene27228 | 0.800601 | 1.34E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene27228 | -0.815168 | 1.06E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene27228 | 0.823987 | 1.03E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27228.t1 | MTR_8g073600 | 90.506 | 158 | 15 | 0 | 1 | 158 | 2 | 159 | 1.47e-102 | 292 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27228.t1 | AT4G16444 | 54.140 | 157 | 67 | 2 | 7 | 158 | 9 | 165 | 6.12e-48 | 154 |
Find 21 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACAGCACATTTAATGATT+AGG | 0.309758 | 8.3:-29046347 | None:intergenic |
| TTGCAGGGAGATTATTATCT+TGG | 0.368038 | 8.3:+29046203 | MS.gene27228:intron |
| AGTTCAAAATAACAACATTA+TGG | 0.384853 | 8.3:+29046237 | MS.gene27228:CDS |
| CAACAACTTGTGCAACCATT+TGG | 0.422346 | 8.3:+29045870 | MS.gene27228:CDS |
| TTGGATTGATAAATTCAAAC+AGG | 0.425720 | 8.3:+29042131 | MS.gene27228:CDS |
| GCTACAGAGTGGATCTGATA+AGG | 0.439227 | 8.3:+29042886 | MS.gene27228:intron |
| AGATTATTATCTTGGAAGAC+TGG | 0.477667 | 8.3:+29046211 | MS.gene27228:CDS |
| GCTGCTTGTGCAAAGGTGGA+TGG | 0.503061 | 8.3:-29044406 | None:intergenic |
| CAGAAGACAGGCGGCTGCAA+AGG | 0.508047 | 8.3:+29044435 | MS.gene27228:CDS |
| CACGGGTTACTTACTGCGAA+AGG | 0.522380 | 8.3:-29042964 | None:intergenic |
| GAGTTTCGCTGCTTGTGCAA+AGG | 0.541591 | 8.3:-29044413 | None:intergenic |
| ACGGGTTACTTACTGCGAAA+GGG | 0.558069 | 8.3:-29042963 | None:intergenic |
| AGCAGCGAAACTCAGAAGAC+AGG | 0.565211 | 8.3:+29044423 | MS.gene27228:CDS |
| TTTCGCTGCTTGTGCAAAGG+TGG | 0.586072 | 8.3:-29044410 | None:intergenic |
| TGTTGAGATATGCTAGCCAC+AGG | 0.593702 | 8.3:-29045852 | None:intergenic |
| ACAGGCGGCTGCAAAGGAGA+AGG | 0.598906 | 8.3:+29044441 | MS.gene27228:CDS |
| AGGTCATAATTTACATGATG+AGG | 0.603687 | 8.3:+29045663 | MS.gene27228:intron |
| AGAACGATTAAGAATATGAG+AGG | 0.613811 | 8.3:-29042087 | None:intergenic |
| TTATTATCTTGGAAGACTGG+AGG | 0.615774 | 8.3:+29046214 | MS.gene27228:CDS |
| AGCGAAACTCAGAAGACAGG+CGG | 0.656303 | 8.3:+29044426 | MS.gene27228:CDS |
| GAAAGCTCTATTCATCACAA+AGG | 0.678514 | 8.3:+29045702 | MS.gene27228:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATATTTCAAATATAATA+AGG | - | chr8.3:29046284-29046303 | None:intergenic | 10.0% |
| !! | AGTAGAAAAAATATAATTTC+AGG | - | chr8.3:29045179-29045198 | None:intergenic | 15.0% |
| !! | GTAGAAAAAATATAATTTCA+GGG | - | chr8.3:29045178-29045197 | None:intergenic | 15.0% |
| !! | TGAAAATAAAATTTGATATC+AGG | - | chr8.3:29045733-29045752 | None:intergenic | 15.0% |
| !!! | ACAATAATTATTTTATGAAG+CGG | - | chr8.3:29045629-29045648 | None:intergenic | 15.0% |
| !! | AAAATCTTCATTCCATTATT+TGG | + | chr8.3:29043537-29043556 | MS.gene27228:intron | 20.0% |
| !! | AAAATTACAAGTGAAACTAT+GGG | + | chr8.3:29044048-29044067 | MS.gene27228:intron | 20.0% |
| !! | AAATCTTCATTCCATTATTT+GGG | + | chr8.3:29043538-29043557 | MS.gene27228:intron | 20.0% |
| !! | AGTTCAAAATAACAACATTA+TGG | + | chr8.3:29046237-29046256 | MS.gene27228:CDS | 20.0% |
| !! | ATTGAAAGGTTTACATATTA+CGG | + | chr8.3:29045085-29045104 | MS.gene27228:intron | 20.0% |
| !! | GAAAAAAAATATCTTAACGA+TGG | + | chr8.3:29043648-29043667 | MS.gene27228:intron | 20.0% |
| !! | TAAAATTACAAGTGAAACTA+TGG | + | chr8.3:29044047-29044066 | MS.gene27228:intron | 20.0% |
| !! | TAATATCAAAGAAAAGCTAA+GGG | + | chr8.3:29044875-29044894 | MS.gene27228:intron | 20.0% |
| !! | TACAATATTTAGACCTTATT+TGG | - | chr8.3:29042289-29042308 | None:intergenic | 20.0% |
| !! | TATAGGATTCTATATAAATG+TGG | + | chr8.3:29044508-29044527 | MS.gene27228:intron | 20.0% |
| !! | TGACTTTACTTATCAAATAA+TGG | + | chr8.3:29043599-29043618 | MS.gene27228:intron | 20.0% |
| !!! | CAATAATTATTTTATGAAGC+GGG | - | chr8.3:29045628-29045647 | None:intergenic | 20.0% |
| !!! | CGTTAAGATATTTTTTTTCT+TGG | - | chr8.3:29043647-29043666 | None:intergenic | 20.0% |
| !!! | TATATTTTTTCTACTATTGC+TGG | + | chr8.3:29045184-29045203 | MS.gene27228:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+AGG | + | chr8.3:29042273-29042292 | MS.gene27228:intron | 20.0% |
| !!! | TTTTCTTCTTTCAACATTAA+AGG | - | chr8.3:29046081-29046100 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTTGGAAATATG+AGG | - | chr8.3:29043637-29043656 | None:intergenic | 20.0% |
| ! | AATACAAAAGTAATACTCAC+GGG | + | chr8.3:29045110-29045129 | MS.gene27228:intron | 25.0% |
| ! | AATATCTTAACGATGGTAAA+TGG | + | chr8.3:29043655-29043674 | MS.gene27228:intron | 25.0% |
| ! | AATCATTAGAAAGAAAGTTG+TGG | - | chr8.3:29044742-29044761 | None:intergenic | 25.0% |
| ! | AGTTTCTATTGTTTGAAAGA+TGG | + | chr8.3:29043436-29043455 | MS.gene27228:intron | 25.0% |
| ! | ATACATAATTAATAGAGGCA+TGG | + | chr8.3:29045017-29045036 | MS.gene27228:intron | 25.0% |
| ! | ATCATAATTGCATTACCAAA+TGG | - | chr8.3:29045888-29045907 | None:intergenic | 25.0% |
| ! | ATTGAGGATGAAATATTGAA+GGG | + | chr8.3:29044072-29044091 | MS.gene27228:intron | 25.0% |
| ! | ATTGATCTTAATATTAGAGC+TGG | + | chr8.3:29043912-29043931 | MS.gene27228:intron | 25.0% |
| ! | ATTGTGAAATATCTTAACGA+TGG | + | chr8.3:29043575-29043594 | MS.gene27228:intron | 25.0% |
| ! | CATAAAACAACTAGTAAAGA+AGG | - | chr8.3:29044654-29044673 | None:intergenic | 25.0% |
| ! | GAATACAAAAGTAATACTCA+CGG | + | chr8.3:29045109-29045128 | MS.gene27228:intron | 25.0% |
| ! | GTAATATCAAAGAAAAGCTA+AGG | + | chr8.3:29044874-29044893 | MS.gene27228:intron | 25.0% |
| ! | GTCGAATACATAATTAATAG+AGG | + | chr8.3:29045012-29045031 | MS.gene27228:intron | 25.0% |
| ! | TATACCTAAATAGAAGAGTT+AGG | + | chr8.3:29044579-29044598 | MS.gene27228:intron | 25.0% |
| ! | TATTGAGGATGAAATATTGA+AGG | + | chr8.3:29044071-29044090 | MS.gene27228:intron | 25.0% |
| ! | TATTGTTACATTTAACATCC+AGG | + | chr8.3:29045643-29045662 | MS.gene27228:intron | 25.0% |
| ! | TCAAGTTTCACTAAATATCT+TGG | - | chr8.3:29044308-29044327 | None:intergenic | 25.0% |
| ! | TCAATATTATATTACACCAC+TGG | - | chr8.3:29046113-29046132 | None:intergenic | 25.0% |
| ! | TTAATGATTAGGAGCTAAAT+AGG | - | chr8.3:29046339-29046358 | None:intergenic | 25.0% |
| ! | TTACTTTACTTCCCAAATAA+TGG | - | chr8.3:29043552-29043571 | None:intergenic | 25.0% |
| ! | TTGGATTGATAAATTCAAAC+AGG | + | chr8.3:29042131-29042150 | MS.gene27228:CDS | 25.0% |
| ! | TTTGATACAGATCATATACT+GGG | - | chr8.3:29043748-29043767 | None:intergenic | 25.0% |
| !! | AATGTAATGGAAATTATGGA+TGG | - | chr8.3:29043691-29043710 | None:intergenic | 25.0% |
| !! | AGAAATCAAACAACTTTTGA+AGG | + | chr8.3:29042931-29042950 | MS.gene27228:CDS | 25.0% |
| !! | ATGATAATGTTCTGTATTAG+TGG | + | chr8.3:29042710-29042729 | MS.gene27228:intron | 25.0% |
| !! | ATGCAATGTAATGGAAATTA+TGG | - | chr8.3:29043695-29043714 | None:intergenic | 25.0% |
| !! | TTGATATTGATTACCTGAAA+GGG | + | chr8.3:29043395-29043414 | MS.gene27228:intron | 25.0% |
| !!! | AAGAAAAATAAGGTATTGGA+TGG | - | chr8.3:29043498-29043517 | None:intergenic | 25.0% |
| !!! | ATCATTTTTTTTGTTCTCTC+AGG | + | chr8.3:29044383-29044402 | MS.gene27228:intron | 25.0% |
| !!! | ATTGGGGATTTTTTTTTCAT+TGG | - | chr8.3:29043795-29043814 | None:intergenic | 25.0% |
| !!! | CACATTTAATTTTGCTTATC+TGG | + | chr8.3:29045817-29045836 | MS.gene27228:CDS | 25.0% |
| !!! | CATCTTTTTTCTTTCTTTCT+GGG | + | chr8.3:29046009-29046028 | MS.gene27228:intron | 25.0% |
| !!! | CTTCTTTACTAGTTGTTTTA+TGG | + | chr8.3:29044652-29044671 | MS.gene27228:intron | 25.0% |
| !!! | CTTCTTTTTTCATGGAAAAA+TGG | - | chr8.3:29043098-29043117 | None:intergenic | 25.0% |
| !!! | CTTTTCAATTTGCTTCTTAT+TGG | + | chr8.3:29042112-29042131 | MS.gene27228:CDS | 25.0% |
| !!! | TAATTTTGCTTATCTGGTTT+TGG | + | chr8.3:29045823-29045842 | MS.gene27228:CDS | 25.0% |
| !!! | TTGGGGATTTTTTTTTCATT+GGG | - | chr8.3:29043794-29043813 | None:intergenic | 25.0% |
| AAAAAAACATCAGCTCAAGA+GGG | - | chr8.3:29045411-29045430 | None:intergenic | 30.0% | |
| AAATCAATTCAGAGCATGTT+TGG | + | chr8.3:29043042-29043061 | MS.gene27228:intron | 30.0% | |
| AACATAAACTGGGATAGAAA+TGG | - | chr8.3:29042382-29042401 | None:intergenic | 30.0% | |
| AACCAGTTTCTTTCTATTGT+AGG | - | chr8.3:29043008-29043027 | None:intergenic | 30.0% | |
| AACTAACGAATGCAATGTAA+TGG | - | chr8.3:29043704-29043723 | None:intergenic | 30.0% | |
| AAGAAAACAATGTATTCCAG+TGG | + | chr8.3:29046094-29046113 | MS.gene27228:intron | 30.0% | |
| AAGCATCATTATGATTGCTA+AGG | + | chr8.3:29044117-29044136 | MS.gene27228:intron | 30.0% | |
| ACATAAACTGGGATAGAAAT+GGG | - | chr8.3:29042381-29042400 | None:intergenic | 30.0% | |
| AGAACGATTAAGAATATGAG+AGG | - | chr8.3:29042090-29042109 | None:intergenic | 30.0% | |
| AGATTATTATCTTGGAAGAC+TGG | + | chr8.3:29046211-29046230 | MS.gene27228:CDS | 30.0% | |
| AGCACAGTTTACATATTGAA+AGG | + | chr8.3:29045071-29045090 | MS.gene27228:intron | 30.0% | |
| AGCATCATTATGATTGCTAA+GGG | + | chr8.3:29044118-29044137 | MS.gene27228:intron | 30.0% | |
| AGGTCATAATTTACATGATG+AGG | + | chr8.3:29045663-29045682 | MS.gene27228:intron | 30.0% | |
| AGTCTTGATCTTATCTAGTT+TGG | - | chr8.3:29044692-29044711 | None:intergenic | 30.0% | |
| ATTTCCCTAATAGTGAAACT+AGG | + | chr8.3:29045238-29045257 | MS.gene27228:intron | 30.0% | |
| ATTTGAGCTGTTTAGATTAC+CGG | + | chr8.3:29043306-29043325 | MS.gene27228:intron | 30.0% | |
| CATAGAGCGATGAAAATAAA+TGG | - | chr8.3:29044335-29044354 | None:intergenic | 30.0% | |
| CCAGAAAGAAAGAAAAAAGA+TGG | - | chr8.3:29046011-29046030 | None:intergenic | 30.0% | |
| CGAAGTAAACAACATAAACT+GGG | - | chr8.3:29042392-29042411 | None:intergenic | 30.0% | |
| GAACAGCACATTTAATGATT+AGG | - | chr8.3:29046350-29046369 | None:intergenic | 30.0% | |
| GAATCCTAACTCTTCTATTT+AGG | - | chr8.3:29044586-29044605 | None:intergenic | 30.0% | |
| GACTGATAAAATCTTGTGTT+TGG | + | chr8.3:29043940-29043959 | MS.gene27228:intron | 30.0% | |
| GACTTATTTCAATTGCTATG+TGG | - | chr8.3:29044995-29045014 | None:intergenic | 30.0% | |
| GCTATTTGACAACATTGTTA+GGG | + | chr8.3:29045324-29045343 | MS.gene27228:intron | 30.0% | |
| GTTTGATACAGATCATATAC+TGG | - | chr8.3:29043749-29043768 | None:intergenic | 30.0% | |
| TAATGTGACAAGAGATAAGA+AGG | + | chr8.3:29042767-29042786 | MS.gene27228:intron | 30.0% | |
| TAGTTTCCATTCTTCAAACA+TGG | + | chr8.3:29043352-29043371 | MS.gene27228:intron | 30.0% | |
| TCATCATGTAAATTATGACC+TGG | - | chr8.3:29045664-29045683 | None:intergenic | 30.0% | |
| TCTTCTTTCAACATTAAAGG+CGG | - | chr8.3:29046078-29046097 | None:intergenic | 30.0% | |
| TGGTGCATACACATAAAAAA+AGG | + | chr8.3:29045037-29045056 | MS.gene27228:intron | 30.0% | |
| TGTATCATGATTTATTCACC+TGG | + | chr8.3:29042439-29042458 | MS.gene27228:intron | 30.0% | |
| TTCCTTAGAAAACTACAAAG+AGG | - | chr8.3:29045370-29045389 | None:intergenic | 30.0% | |
| TTGAGGATGAAATATTGAAG+GGG | + | chr8.3:29044073-29044092 | MS.gene27228:intron | 30.0% | |
| TTGGTCAGTCTTTACAATAT+GGG | - | chr8.3:29044289-29044308 | None:intergenic | 30.0% | |
| TTGTCAAATAGCGCTAATAA+CGG | - | chr8.3:29045316-29045335 | None:intergenic | 30.0% | |
| ! | AGATTTTCCTTCGTTTAAAC+AGG | - | chr8.3:29043524-29043543 | None:intergenic | 30.0% |
| ! | ATCCTCTTTGTAGTTTTCTA+AGG | + | chr8.3:29045365-29045384 | MS.gene27228:intron | 30.0% |
| ! | ATTTTCCTTCGTTTAAACAG+GGG | - | chr8.3:29043522-29043541 | None:intergenic | 30.0% |
| ! | CAACTTTTGAATTAAACGCT+TGG | - | chr8.3:29043226-29043245 | None:intergenic | 30.0% |
| ! | CAGTTTTCATATTTTCGTCA+CGG | + | chr8.3:29045751-29045770 | MS.gene27228:intron | 30.0% |
| ! | CTTTATTTATAACAAACGCC+AGG | + | chr8.3:29043265-29043284 | MS.gene27228:intron | 30.0% |
| ! | GATTTTCCTTCGTTTAAACA+GGG | - | chr8.3:29043523-29043542 | None:intergenic | 30.0% |
| ! | GTCTTGATCTTATCTAGTTT+GGG | - | chr8.3:29044691-29044710 | None:intergenic | 30.0% |
| ! | GTTGATATTGATTACCTGAA+AGG | + | chr8.3:29043394-29043413 | MS.gene27228:intron | 30.0% |
| ! | TGATATTGATTACCTGAAAG+GGG | + | chr8.3:29043396-29043415 | MS.gene27228:intron | 30.0% |
| ! | TGTTGTTTACTTCGCTTAAT+TGG | + | chr8.3:29042398-29042417 | MS.gene27228:intron | 30.0% |
| ! | TGTTGTTTACTTTGCGTAAT+TGG | + | chr8.3:29042201-29042220 | MS.gene27228:intron | 30.0% |
| !! | AAAATAAGGTATTGGATGGA+TGG | - | chr8.3:29043494-29043513 | None:intergenic | 30.0% |
| !! | AACATGCTCTGAATTGATTT+TGG | - | chr8.3:29043042-29043061 | None:intergenic | 30.0% |
| !! | AATCAAACAACTTTTGAAGG+AGG | + | chr8.3:29042934-29042953 | MS.gene27228:CDS | 30.0% |
| !! | ATTATTTTATGAAGCGGGAA+AGG | - | chr8.3:29045623-29045642 | None:intergenic | 30.0% |
| !! | GGCGTTTGTTATAAATAAAG+TGG | - | chr8.3:29043265-29043284 | None:intergenic | 30.0% |
| !!! | ACTACTAGCTTCTTTTTTCA+TGG | - | chr8.3:29043106-29043125 | None:intergenic | 30.0% |
| !!! | AGAAAGAAACTGGTTTTTCT+GGG | + | chr8.3:29043013-29043032 | MS.gene27228:intron | 30.0% |
| !!! | ATTTTTTTTTCATTGGGGGA+TGG | - | chr8.3:29043788-29043807 | None:intergenic | 30.0% |
| !!! | CCATCTTTTTTCTTTCTTTC+TGG | + | chr8.3:29046008-29046027 | MS.gene27228:intron | 30.0% |
| !!! | TAGAAAGAAACTGGTTTTTC+TGG | + | chr8.3:29043012-29043031 | MS.gene27228:intron | 30.0% |
| !!! | TGGGGATTTTTTTTTCATTG+GGG | - | chr8.3:29043793-29043812 | None:intergenic | 30.0% |
| !!! | TTACTTTTTGCTCTTTTGCA+GGG | + | chr8.3:29046188-29046207 | MS.gene27228:intron | 30.0% |
| !!! | TTTTTTTTTCATTGGGGGAT+GGG | - | chr8.3:29043787-29043806 | None:intergenic | 30.0% |
| AAAAAACATCAGCTCAAGAG+GGG | - | chr8.3:29045410-29045429 | None:intergenic | 35.0% | |
| AAACAGGGGGAAGAAAAATA+AGG | - | chr8.3:29043508-29043527 | None:intergenic | 35.0% | |
| AAATCTTGTGTTTGGTCAAC+TGG | + | chr8.3:29043948-29043967 | MS.gene27228:intron | 35.0% | |
| AAATTAGCAGATAACGTTGC+AGG | + | chr8.3:29044956-29044975 | MS.gene27228:intron | 35.0% | |
| AAGATGAAAGATGGTCCAAT+AGG | - | chr8.3:29044626-29044645 | None:intergenic | 35.0% | |
| AAGGTAGACAAGATGAAAGA+TGG | - | chr8.3:29044635-29044654 | None:intergenic | 35.0% | |
| AATGTGCAGCTTATAGCATA+AGG | - | chr8.3:29042255-29042274 | None:intergenic | 35.0% | |
| ACAATGTTTGTTTATGCAGC+AGG | + | chr8.3:29042635-29042654 | MS.gene27228:intron | 35.0% | |
| ACTTTGCGTAATTGGAACTT+TGG | + | chr8.3:29042209-29042228 | MS.gene27228:intron | 35.0% | |
| AGGCTGATAAGATACATATG+TGG | + | chr8.3:29045774-29045793 | MS.gene27228:intron | 35.0% | |
| ATAGAAGAGTTAGGATTCCT+TGG | + | chr8.3:29044588-29044607 | MS.gene27228:intron | 35.0% | |
| ATGCATGCATGTAGAGAAAA+AGG | - | chr8.3:29042173-29042192 | None:intergenic | 35.0% | |
| ATGGAATGAAGTGAACTTGT+TGG | + | chr8.3:29043455-29043474 | MS.gene27228:intron | 35.0% | |
| ATTCACTATGAAAACCGTAG+TGG | - | chr8.3:29045267-29045286 | None:intergenic | 35.0% | |
| ATTGGATGGATGGAATGAAA+TGG | - | chr8.3:29043484-29043503 | None:intergenic | 35.0% | |
| CAATAGCACTCTATCAAACA+CGG | - | chr8.3:29042819-29042838 | None:intergenic | 35.0% | |
| CATATGTGGTCATTGTTTGT+AGG | + | chr8.3:29045788-29045807 | MS.gene27228:intron | 35.0% | |
| CATCATTATGATTGCTAAGG+GGG | + | chr8.3:29044120-29044139 | MS.gene27228:intron | 35.0% | |
| CATTAGAAAGAAAGTTGTGG+AGG | - | chr8.3:29044739-29044758 | None:intergenic | 35.0% | |
| CGCTATTTGACAACATTGTT+AGG | + | chr8.3:29045323-29045342 | MS.gene27228:intron | 35.0% | |
| CTATATGTGAAAGAACTTGC+AGG | - | chr8.3:29044493-29044512 | None:intergenic | 35.0% | |
| CTCCTACAATAGAAAGAAAC+TGG | + | chr8.3:29043003-29043022 | MS.gene27228:intron | 35.0% | |
| CTGCAAGTTCTTTCACATAT+AGG | + | chr8.3:29044491-29044510 | MS.gene27228:intron | 35.0% | |
| CTTGGTCAGTCTTTACAATA+TGG | - | chr8.3:29044290-29044309 | None:intergenic | 35.0% | |
| CTTTCTATTGTAGGAGATAG+TGG | - | chr8.3:29042999-29043018 | None:intergenic | 35.0% | |
| GAAAAAAACATCAGCTCAAG+AGG | - | chr8.3:29045412-29045431 | None:intergenic | 35.0% | |
| GAAAGAAAAAAGATGGACAC+TGG | - | chr8.3:29046004-29046023 | None:intergenic | 35.0% | |
| GAAAGCTCTATTCATCACAA+AGG | + | chr8.3:29045702-29045721 | MS.gene27228:CDS | 35.0% | |
| GCATCATTATGATTGCTAAG+GGG | + | chr8.3:29044119-29044138 | MS.gene27228:intron | 35.0% | |
| GCGAAGTAAACAACATAAAC+TGG | - | chr8.3:29042393-29042412 | None:intergenic | 35.0% | |
| GGGGAAGAAAAATAAGGTAT+TGG | - | chr8.3:29043502-29043521 | None:intergenic | 35.0% | |
| GTGTCCTAGTTTCACTATTA+GGG | - | chr8.3:29045245-29045264 | None:intergenic | 35.0% | |
| TAACGAATTGAGCATGTGTT+TGG | - | chr8.3:29043175-29043194 | None:intergenic | 35.0% | |
| TACAAAGACAAACCAGCAAA+AGG | - | chr8.3:29045451-29045470 | None:intergenic | 35.0% | |
| TCCATTTGGATAAAATGTGC+TGG | + | chr8.3:29045949-29045968 | MS.gene27228:intron | 35.0% | |
| TCTACCATCCTTTCAATAAC+AGG | + | chr8.3:29044711-29044730 | MS.gene27228:intron | 35.0% | |
| TTATTATCTTGGAAGACTGG+AGG | + | chr8.3:29046214-29046233 | MS.gene27228:CDS | 35.0% | |
| TTCAATGCAATCACAAGTGT+CGG | + | chr8.3:29042535-29042554 | MS.gene27228:intron | 35.0% | |
| TTGCAGGGAGATTATTATCT+TGG | + | chr8.3:29046203-29046222 | MS.gene27228:intron | 35.0% | |
| TTTCCACCATGTTTGAAGAA+TGG | - | chr8.3:29043361-29043380 | None:intergenic | 35.0% | |
| TTTCCATTCTTCAAACATGG+TGG | + | chr8.3:29043355-29043374 | MS.gene27228:intron | 35.0% | |
| ! | AAATAGCAGCCACTAAGTTT+TGG | - | chr8.3:29045222-29045241 | None:intergenic | 35.0% |
| ! | AAGTGAAACTATGGGTATTG+AGG | + | chr8.3:29044056-29044075 | MS.gene27228:intron | 35.0% |
| ! | AGATAGTGGTTGCTAAATCA+CGG | - | chr8.3:29042985-29043004 | None:intergenic | 35.0% |
| ! | AGCCAAAATATCTGAAGCAT+AGG | - | chr8.3:29044026-29044045 | None:intergenic | 35.0% |
| ! | CATTTTATCCAAATGGACGA+CGG | - | chr8.3:29045946-29045965 | None:intergenic | 35.0% |
| ! | GCCAAAATATCTGAAGCATA+GGG | - | chr8.3:29044025-29044044 | None:intergenic | 35.0% |
| ! | GTTTTCTCTTTCAGCGTTAA+AGG | - | chr8.3:29046142-29046161 | None:intergenic | 35.0% |
| ! | TCCAGCACATTTTATCCAAA+TGG | - | chr8.3:29045953-29045972 | None:intergenic | 35.0% |
| ! | TTTTCATATTTTCGTCACGG+AGG | + | chr8.3:29045754-29045773 | MS.gene27228:intron | 35.0% |
| ! | TTTTCCTTCGTTTAAACAGG+GGG | - | chr8.3:29043521-29043540 | None:intergenic | 35.0% |
| !! | AAAGAAAAGCTAAGGGTACT+GGG | + | chr8.3:29044882-29044901 | MS.gene27228:intron | 35.0% |
| !! | GATATGTTTTTGCTACAGAG+TGG | + | chr8.3:29042875-29042894 | MS.gene27228:intron | 35.0% |
| !! | TTTGTTTCTCATCCTTTTGC+TGG | + | chr8.3:29045436-29045455 | MS.gene27228:intron | 35.0% |
| !!! | CTTACTTTTTGCTCTTTTGC+AGG | + | chr8.3:29046187-29046206 | MS.gene27228:intron | 35.0% |
| !!! | GAAAGAAACTGGTTTTTCTG+GGG | + | chr8.3:29043014-29043033 | MS.gene27228:intron | 35.0% |
| !!! | GGGGATTTTTTTTTCATTGG+GGG | - | chr8.3:29043792-29043811 | None:intergenic | 35.0% |
| !!! | TAGAGTGCTATTGGTTTTAC+TGG | + | chr8.3:29042826-29042845 | MS.gene27228:intron | 35.0% |
| !!! | TTTTGCTGGTTTGTCTTTGT+AGG | + | chr8.3:29045450-29045469 | MS.gene27228:intron | 35.0% |
| !!! | TTTTTTTTCATTGGGGGATG+GGG | - | chr8.3:29043786-29043805 | None:intergenic | 35.0% |
| AAAGTTAGAGGGTAAGCCTA+TGG | + | chr8.3:29043977-29043996 | MS.gene27228:intron | 40.0% | |
| AACACCTACCAGTTTGCAAA+AGG | - | chr8.3:29043879-29043898 | None:intergenic | 40.0% | |
| AACTGGTCACTGAAAGTTAG+AGG | + | chr8.3:29043965-29043984 | MS.gene27228:intron | 40.0% | |
| ACTGGTCACTGAAAGTTAGA+GGG | + | chr8.3:29043966-29043985 | MS.gene27228:intron | 40.0% | |
| AGAACGTTGTGATAGGTAAG+TGG | - | chr8.3:29044795-29044814 | None:intergenic | 40.0% | |
| AGAGCTGCATATTTGGATTG+GGG | - | chr8.3:29043811-29043830 | None:intergenic | 40.0% | |
| AGATGGTCCAATAGGTATAG+AGG | - | chr8.3:29044618-29044637 | None:intergenic | 40.0% | |
| AGCTGTTTAGATTACCGGAA+AGG | + | chr8.3:29043311-29043330 | MS.gene27228:intron | 40.0% | |
| ATAACGTTGCAGGCAAATAG+CGG | + | chr8.3:29044966-29044985 | MS.gene27228:intron | 40.0% | |
| CAACAACTTGTGCAACCATT+TGG | + | chr8.3:29045870-29045889 | MS.gene27228:CDS | 40.0% | |
| GAGAGCTGCATATTTGGATT+GGG | - | chr8.3:29043812-29043831 | None:intergenic | 40.0% | |
| GATGGTCCAATAGGTATAGA+GGG | - | chr8.3:29044617-29044636 | None:intergenic | 40.0% | |
| GCTGTTTAGATTACCGGAAA+GGG | + | chr8.3:29043312-29043331 | MS.gene27228:intron | 40.0% | |
| GGTGTCCTAGTTTCACTATT+AGG | - | chr8.3:29045246-29045265 | None:intergenic | 40.0% | |
| GTGCATTTGGACAAAACCAT+AGG | - | chr8.3:29043996-29044015 | None:intergenic | 40.0% | |
| TATGTGAAAGAACTTGCAGG+AGG | - | chr8.3:29044490-29044509 | None:intergenic | 40.0% | |
| TCGTGGATACAATCTTGTCT+GGG | + | chr8.3:29043830-29043849 | MS.gene27228:intron | 40.0% | |
| TTATGCAGCAGGACAAATAG+TGG | + | chr8.3:29042646-29042665 | MS.gene27228:intron | 40.0% | |
| TTCGGAAAAACAAGCGTCTA+GGG | + | chr8.3:29043132-29043151 | MS.gene27228:intron | 40.0% | |
| TTTAGATTACCGGAAAGGGA+TGG | + | chr8.3:29043316-29043335 | MS.gene27228:intron | 40.0% | |
| TTTCGGAAAAACAAGCGTCT+AGG | + | chr8.3:29043131-29043150 | MS.gene27228:intron | 40.0% | |
| ! | CAAAGAAAAGCTAAGGGTAC+TGG | + | chr8.3:29044881-29044900 | MS.gene27228:intron | 40.0% |
| ! | CGTGTTTGATAGAGTGCTAT+TGG | + | chr8.3:29042817-29042836 | MS.gene27228:intron | 40.0% |
| ! | GATAGTGGTTGCTAAATCAC+GGG | - | chr8.3:29042984-29043003 | None:intergenic | 40.0% |
| ! | GCCCTATGCTTCAGATATTT+TGG | + | chr8.3:29044021-29044040 | MS.gene27228:intron | 40.0% |
| ! | TATTGATTACCTGAAAGGGG+TGG | + | chr8.3:29043399-29043418 | MS.gene27228:intron | 40.0% |
| !! | GAAGCTAGTAGTTGCTGTTT+CGG | + | chr8.3:29043114-29043133 | MS.gene27228:intron | 40.0% |
| !! | GCTTTGAGACTCTTAAATCC+TGG | - | chr8.3:29043286-29043305 | None:intergenic | 40.0% |
| !!! | TTTTTTTCATTGGGGGATGG+GGG | - | chr8.3:29043785-29043804 | None:intergenic | 40.0% |
| ACTATAGCGCAGTTGCATAG+AGG | - | chr8.3:29042684-29042703 | None:intergenic | 45.0% | |
| AGTGACGAGAACGTTGTGAT+AGG | - | chr8.3:29044802-29044821 | None:intergenic | 45.0% | |
| AGTGTCTGTGCAACAGAAGT+TGG | + | chr8.3:29042603-29042622 | MS.gene27228:intron | 45.0% | |
| ATAACGGCGCTATAGCATAG+TGG | - | chr8.3:29045300-29045319 | None:intergenic | 45.0% | |
| ATACACTAGCGGCGTAACTT+AGG | + | chr8.3:29042740-29042759 | MS.gene27228:intron | 45.0% | |
| ATAGGTATAGAGGGAGACCA+AGG | - | chr8.3:29044608-29044627 | None:intergenic | 45.0% | |
| ATCCAAATATGCAGCTCTCG+TGG | + | chr8.3:29043813-29043832 | MS.gene27228:intron | 45.0% | |
| ATCCACGAGAGCTGCATATT+TGG | - | chr8.3:29043818-29043837 | None:intergenic | 45.0% | |
| ATCCGCTAGCCAAAACTTAG+TGG | + | chr8.3:29045210-29045229 | MS.gene27228:intron | 45.0% | |
| ATTACCTGAAAGGGGTGGAA+AGG | + | chr8.3:29043404-29043423 | MS.gene27228:intron | 45.0% | |
| CAAATGGACGACGGAGTTTA+TGG | - | chr8.3:29045937-29045956 | None:intergenic | 45.0% | |
| CATAAACTCCGTCGTCCATT+TGG | + | chr8.3:29045935-29045954 | MS.gene27228:intron | 45.0% | |
| CATAGGGCATAGTGTGCATT+TGG | - | chr8.3:29044009-29044028 | None:intergenic | 45.0% | |
| CGAGAGCTGCATATTTGGAT+TGG | - | chr8.3:29043813-29043832 | None:intergenic | 45.0% | |
| CTCGTGGATACAATCTTGTC+TGG | + | chr8.3:29043829-29043848 | MS.gene27228:intron | 45.0% | |
| GCTACAGAGTGGATCTGATA+AGG | + | chr8.3:29042886-29042905 | MS.gene27228:intron | 45.0% | |
| GGCTCCTGTTATTGAAAGGA+TGG | - | chr8.3:29044718-29044737 | None:intergenic | 45.0% | |
| GTGAAACTAGGACACCACTA+CGG | + | chr8.3:29045250-29045269 | MS.gene27228:intron | 45.0% | |
| GTTCGTGCTTCATAGTTACC+AGG | - | chr8.3:29042460-29042479 | None:intergenic | 45.0% | |
| TCATCTTTGCAATACTGCGC+AGG | + | chr8.3:29044846-29044865 | MS.gene27228:intron | 45.0% | |
| TCGGAAAAACAAGCGTCTAG+GGG | + | chr8.3:29043133-29043152 | MS.gene27228:intron | 45.0% | |
| TCTTCCCCCTGTTTAAACGA+AGG | + | chr8.3:29043514-29043533 | MS.gene27228:intron | 45.0% | |
| TGATTGCTAAGGGGGATGTA+TGG | + | chr8.3:29044128-29044147 | MS.gene27228:intron | 45.0% | |
| TGGAGGCTCCTGTTATTGAA+AGG | - | chr8.3:29044722-29044741 | None:intergenic | 45.0% | |
| TGGTCTCCCTCTATACCTAT+TGG | + | chr8.3:29044608-29044627 | MS.gene27228:intron | 45.0% | |
| TGTTGAGATATGCTAGCCAC+AGG | - | chr8.3:29045855-29045874 | None:intergenic | 45.0% | |
| ! | ACACTGGACAGACTTTTGTG+CGG | - | chr8.3:29045988-29046007 | None:intergenic | 45.0% |
| ! | ACGGGTTACTTACTGCGAAA+GGG | - | chr8.3:29042966-29042985 | None:intergenic | 45.0% |
| ! | GTGGTGTCAACATACACTAG+CGG | + | chr8.3:29042729-29042748 | MS.gene27228:intron | 45.0% |
| ! | TGTGCCTTTTGCAAACTGGT+AGG | + | chr8.3:29043872-29043891 | MS.gene27228:intron | 45.0% |
| ! | TGTGTGTGCCTTTTGCAAAC+TGG | + | chr8.3:29043868-29043887 | MS.gene27228:intron | 45.0% |
| !!! | AGCCACTAAGTTTTGGCTAG+CGG | - | chr8.3:29045215-29045234 | None:intergenic | 45.0% |
| !!! | TTTTTTCATTGGGGGATGGG+GGG | - | chr8.3:29043784-29043803 | None:intergenic | 45.0% |
| AAAACAAGCGTCTAGGGGCT+CGG | + | chr8.3:29043138-29043157 | MS.gene27228:intron | 50.0% | |
| AGCAGCGAAACTCAGAAGAC+AGG | + | chr8.3:29044423-29044442 | MS.gene27228:CDS | 50.0% | |
| AGCGAAACTCAGAAGACAGG+CGG | + | chr8.3:29044426-29044445 | MS.gene27228:CDS | 50.0% | |
| AGCTGTCAGTGTTGTGTCAC+AGG | + | chr8.3:29042790-29042809 | MS.gene27228:intron | 50.0% | |
| ATTACCGGAAAGGGATGGAG+TGG | + | chr8.3:29043321-29043340 | MS.gene27228:intron | 50.0% | |
| CTTTCCACTCCATCCCTTTC+CGG | - | chr8.3:29043328-29043347 | None:intergenic | 50.0% | |
| GAAGGGGATTACTGACAGTC+TGG | + | chr8.3:29044089-29044108 | MS.gene27228:intron | 50.0% | |
| GAGTTTCGCTGCTTGTGCAA+AGG | - | chr8.3:29044416-29044435 | None:intergenic | 50.0% | |
| GCACAGACACTTCTGCTTGA+AGG | - | chr8.3:29042594-29042613 | None:intergenic | 50.0% | |
| TGTGACACGTGCCAAACATC+AGG | + | chr8.3:29042563-29042582 | MS.gene27228:intron | 50.0% | |
| TTTCGCTGCTTGTGCAAAGG+TGG | - | chr8.3:29044413-29044432 | None:intergenic | 50.0% | |
| ! | CACGGGTTACTTACTGCGAA+AGG | - | chr8.3:29042967-29042986 | None:intergenic | 50.0% |
| ! | GGTACTGGGTCATCAATAGC+AGG | + | chr8.3:29044896-29044915 | MS.gene27228:intron | 50.0% |
| ! | TCCTTTTGATGCGCGTCTAG+TGG | + | chr8.3:29043072-29043091 | MS.gene27228:intron | 50.0% |
| ! | TGAAGGCGTGTCCTGATGTT+TGG | - | chr8.3:29042577-29042596 | None:intergenic | 50.0% |
| !!! | CTGGTTTTGGAGTACTCCTG+TGG | + | chr8.3:29045836-29045855 | MS.gene27228:CDS | 50.0% |
| CAGTCCTTTCCACCCCTTTC+AGG | - | chr8.3:29043411-29043430 | None:intergenic | 55.0% | |
| GCCACTAGACGCGCATCAAA+AGG | - | chr8.3:29043076-29043095 | None:intergenic | 55.0% | |
| GCTGCTTGTGCAAAGGTGGA+TGG | - | chr8.3:29044409-29044428 | None:intergenic | 55.0% | |
| ACAGGCGGCTGCAAAGGAGA+AGG | + | chr8.3:29044441-29044460 | MS.gene27228:CDS | 60.0% | |
| CAGAAGACAGGCGGCTGCAA+AGG | + | chr8.3:29044435-29044454 | MS.gene27228:CDS | 60.0% | |
| TTCATTGGGGGATGGGGGGA+GGG | - | chr8.3:29043780-29043799 | None:intergenic | 60.0% | |
| TTTCATTGGGGGATGGGGGG+AGG | - | chr8.3:29043781-29043800 | None:intergenic | 60.0% | |
| TCATTGGGGGATGGGGGGAG+GGG | - | chr8.3:29043779-29043798 | None:intergenic | 65.0% | |
| ! | GTCTAGGGGCTCGGTTGACG+CGG | + | chr8.3:29043147-29043166 | MS.gene27228:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 29042051 | 29046425 | 29042051 | ID=MS.gene27228 |
| chr8.3 | mRNA | 29042051 | 29046425 | 29042051 | ID=MS.gene27228.t1;Parent=MS.gene27228 |
| chr8.3 | exon | 29042051 | 29042152 | 29042051 | ID=MS.gene27228.t1.exon1;Parent=MS.gene27228.t1 |
| chr8.3 | CDS | 29042051 | 29042152 | 29042051 | ID=cds.MS.gene27228.t1;Parent=MS.gene27228.t1 |
| chr8.3 | exon | 29042893 | 29042972 | 29042893 | ID=MS.gene27228.t1.exon2;Parent=MS.gene27228.t1 |
| chr8.3 | CDS | 29042893 | 29042972 | 29042893 | ID=cds.MS.gene27228.t1;Parent=MS.gene27228.t1 |
| chr8.3 | exon | 29044405 | 29044475 | 29044405 | ID=MS.gene27228.t1.exon3;Parent=MS.gene27228.t1 |
| chr8.3 | CDS | 29044405 | 29044475 | 29044405 | ID=cds.MS.gene27228.t1;Parent=MS.gene27228.t1 |
| chr8.3 | exon | 29045665 | 29045723 | 29045665 | ID=MS.gene27228.t1.exon4;Parent=MS.gene27228.t1 |
| chr8.3 | CDS | 29045665 | 29045723 | 29045665 | ID=cds.MS.gene27228.t1;Parent=MS.gene27228.t1 |
| chr8.3 | exon | 29045810 | 29045891 | 29045810 | ID=MS.gene27228.t1.exon5;Parent=MS.gene27228.t1 |
| chr8.3 | CDS | 29045810 | 29045891 | 29045810 | ID=cds.MS.gene27228.t1;Parent=MS.gene27228.t1 |
| chr8.3 | exon | 29046209 | 29046258 | 29046209 | ID=MS.gene27228.t1.exon6;Parent=MS.gene27228.t1 |
| chr8.3 | CDS | 29046209 | 29046258 | 29046209 | ID=cds.MS.gene27228.t1;Parent=MS.gene27228.t1 |
| chr8.3 | exon | 29046345 | 29046425 | 29046345 | ID=MS.gene27228.t1.exon7;Parent=MS.gene27228.t1 |
| chr8.3 | CDS | 29046345 | 29046425 | 29046345 | ID=cds.MS.gene27228.t1;Parent=MS.gene27228.t1 |
| Gene Sequence |
| Protein sequence |
