AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056764


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056764.t1 MTR_1g021970 88.372 86 3 1 45 123 70 155 1.22e-44 151
MS.gene056764.t1 MTR_1g021970 88.372 86 3 1 45 123 70 155 1.25e-44 151
MS.gene056764.t1 MTR_3g111670 73.256 86 16 1 45 123 75 160 1.77e-34 125
MS.gene056764.t1 MTR_3g032530 95.556 45 2 0 241 285 174 218 2.58e-22 94.7
MS.gene056764.t1 MTR_3g032530 95.556 45 2 0 241 285 217 261 3.71e-22 95.1
MS.gene056764.t1 MTR_3g084740 85.455 55 6 1 132 184 689 743 1.27e-21 95.5
MS.gene056764.t1 MTR_8g011270 81.250 48 9 0 132 179 683 730 1.27e-17 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056764.t1 AT5G13710 88.889 45 5 0 241 285 217 261 1.54e-20 90.5
MS.gene056764.t1 AT5G13710 88.889 45 5 0 241 285 217 261 1.54e-20 90.5
MS.gene056764.t1 AT1G19330 71.875 64 17 1 45 108 72 134 1.39e-19 86.3
MS.gene056764.t1 AT1G75060 47.107 121 51 5 45 155 76 193 3.36e-19 85.1
MS.gene056764.t1 AT1G05520 85.417 48 7 0 132 179 701 748 6.01e-19 87.4
MS.gene056764.t1 AT4G14160 81.250 48 9 0 132 179 691 738 1.97e-18 85.9
MS.gene056764.t1 AT4G14160 81.250 48 9 0 132 179 690 737 2.05e-18 85.9
MS.gene056764.t1 AT3G23660 81.250 48 9 0 132 179 683 730 3.81e-18 85.1
MS.gene056764.t1 AT3G23660 81.250 48 9 0 132 179 709 756 4.12e-18 85.1
MS.gene056764.t1 AT1G75060 54.444 90 32 3 45 125 76 165 4.29e-18 81.3
MS.gene056764.t1 AT1G19330 68.116 69 16 2 45 108 72 139 5.60e-18 82.0
MS.gene056764.t1 AT1G75060 47.200 125 46 6 45 155 76 194 5.89e-18 81.6
MS.gene056764.t1 AT1G19330 68.116 69 16 2 45 108 72 139 5.97e-18 81.6
MS.gene056764.t1 AT2G21630 58.824 51 21 0 132 182 684 734 1.22e-13 71.6
MS.gene056764.t1 AT5G43670 58.333 48 20 0 132 179 714 761 9.52e-11 63.2

Find 69 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGCAAGTAATTCTTAAT+AGG 0.239016 8.4:-66020832 None:intergenic
AAGTCAAGGAGCCATGTTTC+TGG 0.262124 8.4:-66020855 None:intergenic
CGTGAATTCCTTTCTACATT+AGG 0.280802 8.4:+66017686 MS.gene056764:CDS
CAAATGCATACAAGTTATTA+AGG 0.299324 8.4:+66019496 MS.gene056764:CDS
CATTTGGCATGGATCAGATA+TGG 0.299955 8.4:+66018218 MS.gene056764:CDS
GTTGCAAGTAATTCTTAATA+GGG 0.376431 8.4:-66020831 None:intergenic
CAAAAGTCCTACAAATCATT+AGG 0.394669 8.4:+66018459 MS.gene056764:CDS
CTCTGTTGATTCACAGTCCA+AGG 0.394816 8.4:+66018512 MS.gene056764:CDS
AACATGGTTGTTTGAGAGAA+AGG 0.399489 8.4:+66019662 MS.gene056764:CDS
TTGAATTTGAAAATACCATT+TGG 0.400895 8.4:+66018202 MS.gene056764:CDS
TAGAGCTTCAAGACACTTTG+TGG 0.411789 8.4:-66020169 None:intergenic
TCAGTTTCCTGTTCCTAGAT+TGG 0.419726 8.4:+66019251 MS.gene056764:CDS
TTAGATGGACAATGGATTTG+AGG 0.430824 8.4:+66017273 None:intergenic
ACTGATCTCTAATTATTGCC+TGG 0.443181 8.4:-66019233 None:intergenic
TTGAAAATTTAGATGGACAA+TGG 0.453902 8.4:+66017265 None:intergenic
AGGGGTCAATTTCTATGCCT+CGG 0.464418 8.4:+66018532 MS.gene056764:CDS
AGATGATCCTAATGATTTGT+AGG 0.467917 8.4:-66018466 None:intergenic
CTGATCTCTAATTATTGCCT+GGG 0.469139 8.4:-66019232 None:intergenic
CATCGGACTCTCCTCTTCCT+TGG 0.478580 8.4:+66020663 MS.gene056764:CDS
CACACTACCAATCTAGGAAC+AGG 0.481351 8.4:-66019258 None:intergenic
TTTGAAAATACCATTTGGCA+TGG 0.493311 8.4:+66018207 MS.gene056764:CDS
CAGCTTCACTTCAATACCAT+TGG 0.494520 8.4:-66018121 None:intergenic
TGAGCACACACTACCAATCT+AGG 0.494836 8.4:-66019264 None:intergenic
GGAAATTCTTATCACATATG+AGG 0.499411 8.4:+66019628 MS.gene056764:CDS
GGGGTCAATTTCTATGCCTC+GGG 0.500973 8.4:+66018533 MS.gene056764:CDS
GTCATCATCTTCCTCGAGAC+CGG 0.503122 8.4:-66018178 None:intergenic
TCTGTTGATTCACAGTCCAA+GGG 0.503809 8.4:+66018513 MS.gene056764:CDS
TTTGTATGTGAAGGTGATAT+GGG 0.506681 8.4:+66020628 MS.gene056764:intron
CTAGGCAAGTACCAAGGAAG+AGG 0.507019 8.4:-66020674 None:intergenic
GCAGAAATTAAGATTGGTGA+TGG 0.508941 8.4:+66020126 MS.gene056764:CDS
AGGCATAGAAATTGACCCCT+TGG 0.509524 8.4:-66018529 None:intergenic
ATTTCTATGCCTCGGGTGGA+CGG 0.509754 8.4:+66018540 MS.gene056764:CDS
CTGCAGGCAGAAATTAAGAT+TGG 0.511963 8.4:+66020120 MS.gene056764:intron
ATTTGGCATGGATCAGATAT+GGG 0.516241 8.4:+66018219 MS.gene056764:CDS
CATATCTGATCCATGCCAAA+TGG 0.516686 8.4:-66018217 None:intergenic
CCAATGCAGGACTGAACACC+GGG 0.520427 8.4:+66018935 MS.gene056764:intron
ACAAGTAGCTTCTGATATGA+TGG 0.524522 8.4:+66017300 MS.gene056764:CDS
TTAGATCACCTAATGTAGAA+AGG 0.529305 8.4:-66017694 None:intergenic
AGTGTGATTGAACCACCAAC+CGG 0.537912 8.4:+66018159 MS.gene056764:CDS
CTTTGCAAACACTTTATCCA+TGG 0.541322 8.4:-66019544 None:intergenic
GTGTGCTCAACACGGTTCCC+AGG 0.541647 8.4:+66019278 MS.gene056764:CDS
CTTGAAGCTCTAAAGCAAGC+AGG 0.547652 8.4:+66020180 MS.gene056764:CDS
ATGGACAATGGATTTGAGGA+TGG 0.554723 8.4:+66017277 MS.gene056764:CDS
GTCAATTTCTATGCCTCGGG+TGG 0.558052 8.4:+66018536 MS.gene056764:CDS
TCTTCCTCGAGACCGGTTGG+TGG 0.561538 8.4:-66018171 None:intergenic
TGCAAAGATTGAAAATGTTG+AGG 0.562117 8.4:+66017721 MS.gene056764:CDS
GTTCTGATTGTGATTTCAAG+TGG 0.565085 8.4:+66019607 MS.gene056764:CDS
AATCATTAGGATCATCTCAC+AGG 0.568195 8.4:+66018472 MS.gene056764:CDS
ATTGCCTGGGAATAATCTTG+TGG 0.569136 8.4:-66019219 None:intergenic
AATGTGCAGGTTCTTACCAA+TGG 0.571599 8.4:+66018105 MS.gene056764:intron
TTGTATGCATTTGTTGCTGA+CGG 0.574351 8.4:-66019486 None:intergenic
TCCAATGCAGGACTGAACAC+CGG 0.575673 8.4:+66018934 MS.gene056764:intron
TCATCTTCCTCGAGACCGGT+TGG 0.582498 8.4:-66018174 None:intergenic
TTTGTGGTCAATCTAATGAC+AGG 0.586027 8.4:-66020153 None:intergenic
AGCTCCACAAGATTATTCCC+AGG 0.586985 8.4:+66019215 MS.gene056764:CDS
AAAGAAACAAATGTCTACCA+TGG 0.595136 8.4:+66019527 MS.gene056764:CDS
CAGAAATTAAGATTGGTGAT+GGG 0.600994 8.4:+66020127 MS.gene056764:CDS
TACTTGCAACACCAGAAACA+TGG 0.604640 8.4:+66020844 MS.gene056764:CDS
TGAACCACCAACCGGTCTCG+AGG 0.615263 8.4:+66018167 MS.gene056764:CDS
GTATTGAAGTGAAGCTGCAG+AGG 0.621922 8.4:+66018127 MS.gene056764:CDS
GGACTGTGAATCAACAGAGA+AGG 0.625537 8.4:-66018508 None:intergenic
TGAGGTATGTCAGCATAACA+TGG 0.642084 8.4:+66019646 MS.gene056764:CDS
ATGGGAGAAAGATCTAGCAT+CGG 0.642273 8.4:+66020646 MS.gene056764:CDS
AAGCCTGTATGATTAAGTCA+AGG 0.651474 8.4:-66020869 None:intergenic
GTATTTATACCGTCCACCCG+AGG 0.657586 8.4:-66018549 None:intergenic
GAGATGACTGCATACAAACC+CGG 0.674589 8.4:-66018953 None:intergenic
CTGTTGATTCACAGTCCAAG+GGG 0.680824 8.4:+66018514 MS.gene056764:CDS
TTGGTAGTGTGTGCTCAACA+CGG 0.685700 8.4:+66019270 MS.gene056764:CDS
TGATGGCAAGCAGTCAACAG+AGG 0.701292 8.4:+66017317 MS.gene056764:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTAATAATAATAAAATGTT+AGG + chr8.4:66019990-66020009 MS.gene056764:intron 10.0%
!!! AAGTTTTTTCATATTTTATT+TGG + chr8.4:66017976-66017995 MS.gene056764:intron 10.0%
!! ATATTATCTTGATATTATTC+TGG - chr8.4:66020525-66020544 None:intergenic 15.0%
!! TAGAAAAGATTGAATAAAAT+TGG - chr8.4:66017837-66017856 None:intergenic 15.0%
!! TTAAAAATTGAAATTGCATA+AGG - chr8.4:66018718-66018737 None:intergenic 15.0%
!!! TGTTAGTTTTTTTTTTTTTG+TGG + chr8.4:66019072-66019091 MS.gene056764:intron 15.0%
!!! TTTATTTTTCACTTCATTTT+AGG + chr8.4:66018295-66018314 MS.gene056764:intron 15.0%
!! AAATAAAAACTTGGAAAGAT+AGG - chr8.4:66018282-66018301 None:intergenic 20.0%
!! AAATCTATAATACTCATGAA+AGG - chr8.4:66020241-66020260 None:intergenic 20.0%
!! AATAAATGGTGAATAATCTA+TGG + chr8.4:66020413-66020432 MS.gene056764:intron 20.0%
!! AGATTATTCACCATTTATTT+AGG - chr8.4:66020412-66020431 None:intergenic 20.0%
!! ATAAAACCCTAAATAAAAGA+GGG - chr8.4:66017559-66017578 None:intergenic 20.0%
!! GAAAGGAATAAGAAAAATAA+TGG - chr8.4:66019947-66019966 None:intergenic 20.0%
!! TGAAGTGAAAAATAAAAACT+TGG - chr8.4:66018291-66018310 None:intergenic 20.0%
!! TTGAATTTGAAAATACCATT+TGG + chr8.4:66018202-66018221 MS.gene056764:CDS 20.0%
!!! AAATGGTATTTTCAAATTCA+AGG - chr8.4:66018203-66018222 None:intergenic 20.0%
!!! AATTAATTTGTTGATGATTG+AGG + chr8.4:66018629-66018648 MS.gene056764:intron 20.0%
!!! ATTAATTTGTTGATGATTGA+GGG + chr8.4:66018630-66018649 MS.gene056764:intron 20.0%
!!! CAATTTCAATTTTTAATGAG+TGG + chr8.4:66018722-66018741 MS.gene056764:intron 20.0%
!!! GATATTATTCTGGAATATTT+TGG - chr8.4:66020515-66020534 None:intergenic 20.0%
!!! GATGTTTTAATATGACAATA+TGG + chr8.4:66019853-66019872 MS.gene056764:intron 20.0%
!!! TATTTTTTTCTCTTCTCTAA+TGG + chr8.4:66018577-66018596 MS.gene056764:intron 20.0%
!!! TTCATTGATGTTTTTTTAAC+AGG + chr8.4:66019437-66019456 MS.gene056764:intron 20.0%
! AAATCTTGACTCAAACAAAA+TGG - chr8.4:66019392-66019411 None:intergenic 25.0%
! AATCTTGACTCAAACAAAAT+GGG - chr8.4:66019391-66019410 None:intergenic 25.0%
! ATATGGGTAAGTTTCAATTT+GGG + chr8.4:66018235-66018254 MS.gene056764:intron 25.0%
! ATTAAAACATCAACATAAGC+TGG - chr8.4:66017898-66017917 None:intergenic 25.0%
! CAAATGCATACAAGTTATTA+AGG + chr8.4:66019496-66019515 MS.gene056764:CDS 25.0%
! CATAAAACCCTAAATAAAAG+AGG - chr8.4:66017560-66017579 None:intergenic 25.0%
! GTAACAACAATTTCTTTAGT+AGG - chr8.4:66018978-66018997 None:intergenic 25.0%
! GTTGCAAGTAATTCTTAATA+GGG - chr8.4:66020834-66020853 None:intergenic 25.0%
! TAGACTCAATCCTAAATAAA+TGG + chr8.4:66020399-66020418 MS.gene056764:intron 25.0%
! TAGGAACTGAAAACTAAATT+TGG + chr8.4:66017458-66017477 MS.gene056764:intron 25.0%
! TGTTGCAAGTAATTCTTAAT+AGG - chr8.4:66020835-66020854 None:intergenic 25.0%
! TTTCATATACAATTGTTGCA+TGG + chr8.4:66018055-66018074 MS.gene056764:intron 25.0%
!! AAGTCTTTTCTATCTTTGAA+AGG + chr8.4:66019686-66019705 MS.gene056764:intron 25.0%
!! CTGTATATAACAGTTCTTTT+AGG + chr8.4:66019920-66019939 MS.gene056764:intron 25.0%
!! GAGTCAAGATTTTTCATAAT+AGG + chr8.4:66019400-66019419 MS.gene056764:intron 25.0%
!! TAAATCTGGTTTAAGAATCA+AGG + chr8.4:66019795-66019814 MS.gene056764:intron 25.0%
!! TCTTTTCTTTTTGTATGTGA+AGG + chr8.4:66020619-66020638 MS.gene056764:intron 25.0%
!!! AAAGTTTTGAGCATTAAATC+TGG + chr8.4:66019781-66019800 MS.gene056764:intron 25.0%
!!! AGTCTTTTCTATCTTTGAAA+GGG + chr8.4:66019687-66019706 MS.gene056764:intron 25.0%
!!! ATTTTTTTCGTTGAAGTTGT+GGG + chr8.4:66020261-66020280 MS.gene056764:intron 25.0%
!!! CTCTTTTATTTAGGGTTTTA+TGG + chr8.4:66017558-66017577 MS.gene056764:intron 25.0%
!!! TATTTTTTTCGTTGAAGTTG+TGG + chr8.4:66020260-66020279 MS.gene056764:intron 25.0%
AAAAAACATCAATGAAACCC+TGG - chr8.4:66019433-66019452 None:intergenic 30.0%
AAACACTAATCCCTATTTGT+AGG + chr8.4:66020370-66020389 MS.gene056764:intron 30.0%
AAAGAAACAAATGTCTACCA+TGG + chr8.4:66019527-66019546 MS.gene056764:CDS 30.0%
AAATTCCCATTTAGCCAATT+AGG - chr8.4:66020600-66020619 None:intergenic 30.0%
AACACTAATCCCTATTTGTA+GGG + chr8.4:66020371-66020390 MS.gene056764:intron 30.0%
AAGAATAGTGAGAGTAGAAT+TGG + chr8.4:66017592-66017611 MS.gene056764:intron 30.0%
ACTTTCACAGTGATTTAGTT+AGG + chr8.4:66017439-66017458 MS.gene056764:intron 30.0%
AGTGAAAGCAAAAGTAAGAA+AGG - chr8.4:66019964-66019983 None:intergenic 30.0%
ATAAGAAACAATACTGACCT+GGG - chr8.4:66019298-66019317 None:intergenic 30.0%
ATATACAATTGTTGCATGGA+TGG + chr8.4:66018059-66018078 MS.gene056764:intron 30.0%
ATCTTGACTCAAACAAAATG+GGG - chr8.4:66019390-66019409 None:intergenic 30.0%
ATTTAAGAGATCAGCCTAAT+TGG + chr8.4:66020583-66020602 MS.gene056764:intron 30.0%
CAAAAGTCCTACAAATCATT+AGG + chr8.4:66018459-66018478 MS.gene056764:CDS 30.0%
CAAAATGCAATAACAGTGAA+TGG - chr8.4:66018847-66018866 None:intergenic 30.0%
GATATGGGTAAGTTTCAATT+TGG + chr8.4:66018234-66018253 MS.gene056764:intron 30.0%
GGAAATTCTTATCACATATG+AGG + chr8.4:66019628-66019647 MS.gene056764:CDS 30.0%
TATGCAAATAAACCAATGCA+TGG - chr8.4:66019714-66019733 None:intergenic 30.0%
TATTTCACTTTACGCACTTT+AGG + chr8.4:66020800-66020819 MS.gene056764:intron 30.0%
TCATAATAGGAAACTTACCA+GGG + chr8.4:66019413-66019432 MS.gene056764:intron 30.0%
TCTATGTTTCCCTACAAATA+GGG - chr8.4:66020383-66020402 None:intergenic 30.0%
TGATCCTAAGAGATAATCTA+AGG + chr8.4:66020454-66020473 MS.gene056764:intron 30.0%
TGCAAAGATTGAAAATGTTG+AGG + chr8.4:66017721-66017740 MS.gene056764:CDS 30.0%
TTAGATCACCTAATGTAGAA+AGG - chr8.4:66017697-66017716 None:intergenic 30.0%
TTCATAATAGGAAACTTACC+AGG + chr8.4:66019412-66019431 MS.gene056764:intron 30.0%
TTGTTTCATGAAAAATGTGC+AGG + chr8.4:66018092-66018111 MS.gene056764:intron 30.0%
TTTGAAAATACCATTTGGCA+TGG + chr8.4:66018207-66018226 MS.gene056764:CDS 30.0%
TTTGTATGTGAAGGTGATAT+GGG + chr8.4:66020628-66020647 MS.gene056764:intron 30.0%
TTTGTCACTACATACTGTAT+AGG + chr8.4:66020040-66020059 MS.gene056764:intron 30.0%
! ACCTTGTGTGTTTAAAATAC+AGG + chr8.4:66017661-66017680 MS.gene056764:intron 30.0%
! AGATGATCCTAATGATTTGT+AGG - chr8.4:66018469-66018488 None:intergenic 30.0%
! CAGAAATTAAGATTGGTGAT+GGG + chr8.4:66020127-66020146 MS.gene056764:CDS 30.0%
! TGGAATTTTGCTTTAATGAG+TGG - chr8.4:66020098-66020117 None:intergenic 30.0%
! TTTTGTATGTGAAGGTGATA+TGG + chr8.4:66020627-66020646 MS.gene056764:intron 30.0%
! TTTTTGTGAGCAGAATTTTC+AGG - chr8.4:66019000-66019019 None:intergenic 30.0%
!! ATACCATATTTCTGGTGAAA+AGG - chr8.4:66020754-66020773 None:intergenic 30.0%
!!! AATATTTTGGTTTATCCCCT+AGG - chr8.4:66020502-66020521 None:intergenic 30.0%
!!! ATATTTTGGTTTATCCCCTA+GGG - chr8.4:66020501-66020520 None:intergenic 30.0%
!!! TGATGTGTAGTTTTGAAGAA+TGG + chr8.4:66018801-66018820 MS.gene056764:intron 30.0%
AAACAAAATGGGGGAAAACA+CGG - chr8.4:66019380-66019399 None:intergenic 35.0%
AAATAAAAGAGGGCTCATCA+AGG - chr8.4:66017549-66017568 None:intergenic 35.0%
AACATGGTTGTTTGAGAGAA+AGG + chr8.4:66019662-66019681 MS.gene056764:CDS 35.0%
AAGGTTGTAAACTTACCCTA+GGG + chr8.4:66020483-66020502 MS.gene056764:intron 35.0%
AATCATTAGGATCATCTCAC+AGG + chr8.4:66018472-66018491 MS.gene056764:CDS 35.0%
ACAAGTAGCTTCTGATATGA+TGG + chr8.4:66017300-66017319 MS.gene056764:CDS 35.0%
ACTGATCTCTAATTATTGCC+TGG - chr8.4:66019236-66019255 None:intergenic 35.0%
AGACTTACTCTCATACTTGT+AGG - chr8.4:66019881-66019900 None:intergenic 35.0%
AGCACAAACAAATCAGCAAT+AGG - chr8.4:66018409-66018428 None:intergenic 35.0%
AGGAGAAGTCATTTAATGAG+CGG + chr8.4:66020060-66020079 MS.gene056764:intron 35.0%
AGGTATGTTAGTAGAAATCC+TGG - chr8.4:66017645-66017664 None:intergenic 35.0%
ATCAGCCTAATTGGCTAAAT+GGG + chr8.4:66020592-66020611 MS.gene056764:intron 35.0%
ATGCTTCTGATCCTTTGATT+TGG + chr8.4:66017519-66017538 MS.gene056764:intron 35.0%
ATTTGGCATGGATCAGATAT+GGG + chr8.4:66018219-66018238 MS.gene056764:CDS 35.0%
CAGAAGCAATACCATATTTC+TGG - chr8.4:66020762-66020781 None:intergenic 35.0%
CAGCAATAGGGAAAATCAAA+AGG - chr8.4:66018396-66018415 None:intergenic 35.0%
CAGTCAACAGAGGAAAAAAA+GGG + chr8.4:66017327-66017346 MS.gene056764:CDS 35.0%
CGTGAATTCCTTTCTACATT+AGG + chr8.4:66017686-66017705 MS.gene056764:CDS 35.0%
CTGATCTCTAATTATTGCCT+GGG - chr8.4:66019235-66019254 None:intergenic 35.0%
CTTTGCAAACACTTTATCCA+TGG - chr8.4:66019547-66019566 None:intergenic 35.0%
GATAAGAAACAATACTGACC+TGG - chr8.4:66019299-66019318 None:intergenic 35.0%
GCACAAACAAATCAGCAATA+GGG - chr8.4:66018408-66018427 None:intergenic 35.0%
GCAGAAATTAAGATTGGTGA+TGG + chr8.4:66020126-66020145 MS.gene056764:CDS 35.0%
GTAATTGATGTTTCCAATGC+AGG + chr8.4:66018922-66018941 MS.gene056764:intron 35.0%
GTCTATGTTTCCCTACAAAT+AGG - chr8.4:66020384-66020403 None:intergenic 35.0%
GTTCTGATTGTGATTTCAAG+TGG + chr8.4:66019607-66019626 MS.gene056764:CDS 35.0%
TAAGGTTGTAAACTTACCCT+AGG + chr8.4:66020482-66020501 MS.gene056764:intron 35.0%
TCTTGACTCAAACAAAATGG+GGG - chr8.4:66019389-66019408 None:intergenic 35.0%
TGCATTTCTTCATTGTGTAC+TGG + chr8.4:66017749-66017768 MS.gene056764:intron 35.0%
TGCTCATGGTATGAATACTT+TGG - chr8.4:66019321-66019340 None:intergenic 35.0%
TGGTTTAAGAATCAAGGACT+AGG + chr8.4:66019801-66019820 MS.gene056764:intron 35.0%
TTGAATCAGCATAGCTGATA+AGG - chr8.4:66017803-66017822 None:intergenic 35.0%
TTTGTGGTCAATCTAATGAC+AGG - chr8.4:66020156-66020175 None:intergenic 35.0%
! ACACCTTTTCACCAGAAATA+TGG + chr8.4:66020748-66020767 MS.gene056764:intron 35.0%
! ACTAACTTTTCCACACACAA+GGG - chr8.4:66018904-66018923 None:intergenic 35.0%
! ATGGTGGAAATAGTTGATTC+CGG + chr8.4:66018820-66018839 MS.gene056764:intron 35.0%
! TACTAACTTTTCCACACACA+AGG - chr8.4:66018905-66018924 None:intergenic 35.0%
! TGCTTCTGATCCTTTGATTT+GGG + chr8.4:66017520-66017539 MS.gene056764:intron 35.0%
! TTGTATGCATTTGTTGCTGA+CGG - chr8.4:66019489-66019508 None:intergenic 35.0%
!! CTGACTTTAATTTGTGGTAC+AGG + chr8.4:66019173-66019192 MS.gene056764:intron 35.0%
!! GATGAGCCCTCTTTTATTTA+GGG + chr8.4:66017550-66017569 MS.gene056764:intron 35.0%
!! GCCTGTATTTTAAACACACA+AGG - chr8.4:66017665-66017684 None:intergenic 35.0%
!! TGATGAGCCCTCTTTTATTT+AGG + chr8.4:66017549-66017568 MS.gene056764:intron 35.0%
!!! TGTGTAGTTTTGAAGAATGG+TGG + chr8.4:66018804-66018823 MS.gene056764:intron 35.0%
!!! TTTTTTCCTACTTCTGTTCC+AGG + chr8.4:66017624-66017643 MS.gene056764:intron 35.0%
AAAGCAAAATTCCATGCTGC+AGG + chr8.4:66020104-66020123 MS.gene056764:intron 40.0%
AATCACTGTGAAAGTGAGAG+TGG - chr8.4:66017434-66017453 None:intergenic 40.0%
AATGTGCAGGTTCTTACCAA+TGG + chr8.4:66018105-66018124 MS.gene056764:intron 40.0%
ACACACATCAGTATTGCTCA+TGG - chr8.4:66019335-66019354 None:intergenic 40.0%
ACTTAGCAGCTTCTGTCTAA+CGG + chr8.4:66020715-66020734 MS.gene056764:intron 40.0%
AGAAATCCTGGAACAGAAGT+AGG - chr8.4:66017633-66017652 None:intergenic 40.0%
AGGTTGTAAACTTACCCTAG+GGG + chr8.4:66020484-66020503 MS.gene056764:intron 40.0%
ATCAAGGACTAGGAGAATGA+AGG + chr8.4:66019811-66019830 MS.gene056764:intron 40.0%
ATCAAGGACTCCCAAATCAA+AGG - chr8.4:66017533-66017552 None:intergenic 40.0%
ATGGGAGAAAGATCTAGCAT+CGG + chr8.4:66020646-66020665 MS.gene056764:CDS 40.0%
ATTGCCTGGGAATAATCTTG+TGG - chr8.4:66019222-66019241 None:intergenic 40.0%
CAGAGAGAGAAAAGGAATAC+TGG - chr8.4:66019150-66019169 None:intergenic 40.0%
CAGCTTCACTTCAATACCAT+TGG - chr8.4:66018124-66018143 None:intergenic 40.0%
CATATCTGATCCATGCCAAA+TGG - chr8.4:66018220-66018239 None:intergenic 40.0%
CATTTGGCATGGATCAGATA+TGG + chr8.4:66018218-66018237 MS.gene056764:CDS 40.0%
CGTGCCTTAGATTATCTCTT+AGG - chr8.4:66020461-66020480 None:intergenic 40.0%
CTGCAGGCAGAAATTAAGAT+TGG + chr8.4:66020120-66020139 MS.gene056764:intron 40.0%
GAGAAGTCATTTAATGAGCG+GGG + chr8.4:66020062-66020081 MS.gene056764:intron 40.0%
GATCAGCCTAATTGGCTAAA+TGG + chr8.4:66020591-66020610 MS.gene056764:intron 40.0%
GCAGTCAACAGAGGAAAAAA+AGG + chr8.4:66017326-66017345 MS.gene056764:CDS 40.0%
GGAGAAGTCATTTAATGAGC+GGG + chr8.4:66020061-66020080 MS.gene056764:intron 40.0%
TACTTGCAACACCAGAAACA+TGG + chr8.4:66020844-66020863 MS.gene056764:CDS 40.0%
TAGAGCTTCAAGACACTTTG+TGG - chr8.4:66020172-66020191 None:intergenic 40.0%
TCAGTTTCCTGTTCCTAGAT+TGG + chr8.4:66019251-66019270 MS.gene056764:CDS 40.0%
TGAGGTATGTCAGCATAACA+TGG + chr8.4:66019646-66019665 MS.gene056764:CDS 40.0%
TGCAATAACAGTGAATGGTC+CGG - chr8.4:66018842-66018861 None:intergenic 40.0%
! AGATAATCTAAGGCACGCTA+AGG + chr8.4:66020464-66020483 MS.gene056764:intron 40.0%
! ATGGACAATGGATTTGAGGA+TGG + chr8.4:66017277-66017296 MS.gene056764:CDS 40.0%
! ATTTAGAGTACCCTTGTGTG+TGG + chr8.4:66018891-66018910 MS.gene056764:intron 40.0%
!! CTGCTGCTGACTTTAATTTG+TGG + chr8.4:66019167-66019186 MS.gene056764:intron 40.0%
!! TCTAAAGCAAGCAGGTTTTG+AGG + chr8.4:66020188-66020207 MS.gene056764:CDS 40.0%
!! TCTGTTGATTCACAGTCCAA+GGG + chr8.4:66018513-66018532 MS.gene056764:CDS 40.0%
!!! CTTAGAGGCATTTTCGTAGT+TGG + chr8.4:66019106-66019125 MS.gene056764:intron 40.0%
AAGTCAAGGAGCCATGTTTC+TGG - chr8.4:66020858-66020877 None:intergenic 45.0%
AGCTCCACAAGATTATTCCC+AGG + chr8.4:66019215-66019234 MS.gene056764:CDS 45.0%
AGGCATAGAAATTGACCCCT+TGG - chr8.4:66018532-66018551 None:intergenic 45.0%
AGGGGTCAATTTCTATGCCT+CGG + chr8.4:66018532-66018551 MS.gene056764:CDS 45.0%
AGTGTGATTGAACCACCAAC+CGG + chr8.4:66018159-66018178 MS.gene056764:CDS 45.0%
CACACTACCAATCTAGGAAC+AGG - chr8.4:66019261-66019280 None:intergenic 45.0%
CTTAATTTCTGCCTGCAGCA+TGG - chr8.4:66020118-66020137 None:intergenic 45.0%
CTTAGCAGCTTCTGTCTAAC+GGG + chr8.4:66020716-66020735 MS.gene056764:intron 45.0%
GAGAAGTGACTCTTGTCTCT+AGG - chr8.4:66020695-66020714 None:intergenic 45.0%
GAGATGACTGCATACAAACC+CGG - chr8.4:66018956-66018975 None:intergenic 45.0%
GGACTGTGAATCAACAGAGA+AGG - chr8.4:66018511-66018530 None:intergenic 45.0%
GTATTGAAGTGAAGCTGCAG+AGG + chr8.4:66018127-66018146 MS.gene056764:CDS 45.0%
TGAGCACACACTACCAATCT+AGG - chr8.4:66019267-66019286 None:intergenic 45.0%
TGTGAAAGTGAGAGTGGTGA+TGG - chr8.4:66017428-66017447 None:intergenic 45.0%
TTGTCTCTAGGCAAGTACCA+AGG - chr8.4:66020683-66020702 None:intergenic 45.0%
! CTTTGAAAGGGTCCATGCAT+TGG + chr8.4:66019699-66019718 MS.gene056764:intron 45.0%
!! CTCTGTTGATTCACAGTCCA+AGG + chr8.4:66018512-66018531 MS.gene056764:CDS 45.0%
!! CTGTTGATTCACAGTCCAAG+GGG + chr8.4:66018514-66018533 MS.gene056764:CDS 45.0%
!! CTTGAAGCTCTAAAGCAAGC+AGG + chr8.4:66020180-66020199 MS.gene056764:CDS 45.0%
!! TTGGTAGTGTGTGCTCAACA+CGG + chr8.4:66019270-66019289 MS.gene056764:CDS 45.0%
ATTTCTATGCCTCGGGTGGA+CGG + chr8.4:66018540-66018559 MS.gene056764:CDS 50.0%
CTAGGCAAGTACCAAGGAAG+AGG - chr8.4:66020677-66020696 None:intergenic 50.0%
GGGGTCAATTTCTATGCCTC+GGG + chr8.4:66018533-66018552 MS.gene056764:CDS 50.0%
GTATTTATACCGTCCACCCG+AGG - chr8.4:66018552-66018571 None:intergenic 50.0%
GTCAATTTCTATGCCTCGGG+TGG + chr8.4:66018536-66018555 MS.gene056764:CDS 50.0%
GTCAGCAGCAGAGAGAGAAA+AGG - chr8.4:66019158-66019177 None:intergenic 50.0%
GTCATCATCTTCCTCGAGAC+CGG - chr8.4:66018181-66018200 None:intergenic 50.0%
TCCAATGCAGGACTGAACAC+CGG + chr8.4:66018934-66018953 MS.gene056764:intron 50.0%
TGATGGCAAGCAGTCAACAG+AGG + chr8.4:66017317-66017336 MS.gene056764:CDS 50.0%
! GTGGACGTTGCTTTGCTTAG+AGG + chr8.4:66019091-66019110 MS.gene056764:intron 50.0%
!! GAAAGTGAGAGTGGTGATGG+AGG - chr8.4:66017425-66017444 None:intergenic 50.0%
!! TTCTGTCTAACGGGCTCTGT+TGG + chr8.4:66020725-66020744 MS.gene056764:intron 50.0%
CATCGGACTCTCCTCTTCCT+TGG + chr8.4:66020663-66020682 MS.gene056764:CDS 55.0%
CCAATGCAGGACTGAACACC+GGG + chr8.4:66018935-66018954 MS.gene056764:intron 55.0%
TCATCTTCCTCGAGACCGGT+TGG - chr8.4:66018177-66018196 None:intergenic 55.0%
CCCGGTGTTCAGTCCTGCAT+TGG - chr8.4:66018938-66018957 None:intergenic 60.0%
GTGTGCTCAACACGGTTCCC+AGG + chr8.4:66019278-66019297 MS.gene056764:CDS 60.0%
TCTTCCTCGAGACCGGTTGG+TGG - chr8.4:66018174-66018193 None:intergenic 60.0%
TGAACCACCAACCGGTCTCG+AGG + chr8.4:66018167-66018186 MS.gene056764:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 66017277 66020879 66017277 ID=MS.gene056764
chr8.4 mRNA 66017277 66020879 66017277 ID=MS.gene056764.t1;Parent=MS.gene056764
chr8.4 exon 66017277 66017348 66017277 ID=MS.gene056764.t1.exon1;Parent=MS.gene056764.t1
chr8.4 CDS 66017277 66017348 66017277 ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1
chr8.4 exon 66017683 66017742 66017683 ID=MS.gene056764.t1.exon2;Parent=MS.gene056764.t1
chr8.4 CDS 66017683 66017742 66017683 ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1
chr8.4 exon 66018114 66018240 66018114 ID=MS.gene056764.t1.exon3;Parent=MS.gene056764.t1
chr8.4 CDS 66018114 66018240 66018114 ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1
chr8.4 exon 66018445 66018561 66018445 ID=MS.gene056764.t1.exon4;Parent=MS.gene056764.t1
chr8.4 CDS 66018445 66018561 66018445 ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1
chr8.4 exon 66018944 66018960 66018944 ID=MS.gene056764.t1.exon5;Parent=MS.gene056764.t1
chr8.4 CDS 66018944 66018960 66018944 ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1
chr8.4 exon 66019195 66019299 66019195 ID=MS.gene056764.t1.exon6;Parent=MS.gene056764.t1
chr8.4 CDS 66019195 66019299 66019195 ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1
chr8.4 exon 66019459 66019683 66019459 ID=MS.gene056764.t1.exon7;Parent=MS.gene056764.t1
chr8.4 CDS 66019459 66019683 66019459 ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1
chr8.4 exon 66020126 66020209 66020126 ID=MS.gene056764.t1.exon8;Parent=MS.gene056764.t1
chr8.4 CDS 66020126 66020209 66020126 ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1
chr8.4 exon 66020641 66020684 66020641 ID=MS.gene056764.t1.exon9;Parent=MS.gene056764.t1
chr8.4 CDS 66020641 66020684 66020641 ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1
chr8.4 exon 66020822 66020879 66020822 ID=MS.gene056764.t1.exon10;Parent=MS.gene056764.t1
chr8.4 CDS 66020822 66020879 66020822 ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1
Gene Sequence

>MS.gene056764

ATGGACAATGGATTTGAGGATGGACAAGTAGCTTCTGATATGATGGCAAGCAGTCAACAGAGGAAAAAAAGGGTTAATTTCTACTTTTTCATGTGTTGTTTTAGTTTTTCTTCATTATAGTTTTTCTACATATAATTCACTGAGACCTCCATCACCACTCTCACTTTCACAGTGATTTAGTTAGGAACTGAAAACTAAATTTGGCATCATACATCAATGTTGATTTGTGTCAAAATTGTTAGATGCTTCTGATCCTTTGATTTGGGAGTCCTTGATGAGCCCTCTTTTATTTAGGGTTTTATGGAATTGAGTAATAAGAATAGTGAGAGTAGAATTGGTCATTTAATTTTTTTCCTACTTCTGTTCCAGGATTTCTACTAACATACCTTGTGTGTTTAAAATACAGGCACGTGAATTCCTTTCTACATTAGGTGATCTAATTTTTGCAAAGATTGAAAATGTTGAGGTGAATTGCATTTCTTCATTGTGTACTGGACAAAATTGAATTATTTCTTAGTTAGATCCTTATCAGCTATGCTGATTCAACTTGAATTTTGCCAATTTTATTCAATCTTTTCTATTTTGAAGAGTAAAAATCTTTACATGATGATTTTTTTTCCAGCTTATGTTGATGTTTTAATCTCAGATTGTTTGTTTTAGCTACATACATGCTTTGACTATAACTCTTTTTTTAGTCACAAGTTTTTTCATATTTTATTTGGATCTGAATCAATTTTAATTTTTAGATACAATAGATTTTTTATGTGATGTCTAAGAGTTTCATATACAATTGTTGCATGGATGGTTATTTTACTTTGTTTCATGAAAAATGTGCAGGTTCTTACCAATGGTATTGAAGTGAAGCTGCAGAGGAATGCTCTTAGTGTGATTGAACCACCAACCGGTCTCGAGGAAGATGATGACCTTGAATTTGAAAATACCATTTGGCATGGATCAGATATGGGTAAGTTTCAATTTGGGATGTTACTGTTTTTTTATGTTCCTATCTTTCCAAGTTTTTATTTTTCACTTCATTTTAGGAAATTATGATTGTATTTGCAAAGATTTTTATGAGTTTGTAGTTATATTTGATCAGTCTGTGTGATTGCTTCTCTTCCTTTTGATTTTCCCTATTGCTGATTTGTTTGTGCTTTGTTTGATTTCTCAGCATCAGATAACACACAAAAGTCCTACAAATCATTAGGATCATCTCACAGGAGCATGAGCAGATCCTTCTCTGTTGATTCACAGTCCAAGGGGTCAATTTCTATGCCTCGGGTGGACGGTATAAATACTTGACTATTTTTTTCTCTTCTCTAATGGATTTTTTGCTACTCTTTTGTATATCAGAAAATTAATTTGTTGATGATTGAGGGAATTTGAATCTTTTTTTTTTGCAAGATTGCGTATTCTTTATTGAAAGATGAGAATGAATTTTCCTTATGCAATTTCAATTTTTAATGAGTGGCTTTTGAAATCTGATAATGTTATTCTTTAAATTAGCTTTAAGAAATTCATCAACTATGATGTGTAGTTTTGAAGAATGGTGGAAATAGTTGATTCCGGACCATTCACTGTTATTGCATTTTGATTAAATTAGTTGTTGTGTTTTCAATTTAGAGTACCCTTGTGTGTGGAAAAGTTAGTAATTGATGTTTCCAATGCAGGACTGAACACCGGGTTTGTATGCAGTCATCTCCTACTAAAGAAATTGTTGTTACCTGAAAATTCTGCTCACAAAAATTATCTTCATATATAATTTACAATTTAATCTGTAAGAGCATTAGTTACTTTCTGTTAGTTTTTTTTTTTTTGTGGACGTTGCTTTGCTTAGAGGCATTTTCGTAGTTGGTGTCAAGTGTTGCATTTACCAGTATTCCTTTTCTCTCTCTGCTGCTGACTTTAATTTGTGGTACAGGCTTTTGCACAACTGTTAAGAGCTCCACAAGATTATTCCCAGGCAATAATTAGAGATCAGTTTCCTGTTCCTAGATTGGTAGTGTGTGCTCAACACGGTTCCCAGGTCAGTATTGTTTCTTATCCAAAGTATTCATACCATGAGCAATACTGATGTGTGTTTTAAACTTTTCGCAATATTATCCGTGTTTTCCCCCATTTTGTTTGAGTCAAGATTTTTCATAATAGGAAACTTACCAGGGTTTCATTGATGTTTTTTTAACAGGCTAGATTTTTATTAGCAAAACTGAATCCGTCAGCAACAAATGCATACAAGTTATTAAGGACTGAAATAAAGAAACAAATGTCTACCATGGATAAAGTGTTTGCAAAGTTATTTATATTCACTCTATTCAATTACATTGTTGTTATTTGTTCTGATTGTGATTTCAAGTGGAAATTCTTATCACATATGAGGTATGTCAGCATAACATGGTTGTTTGAGAGAAAGGTAAGTCTTTTCTATCTTTGAAAGGGTCCATGCATTGGTTTATTTGCATAACAAATTTAAGTGCAAGTTATATGTATCTTGCAATAAATTACAAGTAAAAGTTTTGAGCATTAAATCTGGTTTAAGAATCAAGGACTAGGAGAATGAAGGAATCTTAGATTTAGATGATGATGTTTTAATATGACAATATGGAGCCTACAAGTATGAGAGTAAGTCTTTGATCGAATATTAATAAACTGTATATAACAGTTCTTTTAGGTCCATTATTTTTCTTATTCCTTTCTTACTTTTGCTTTCACTTTAATCTCTAATAATAATAAAATGTTAGGATCAGTTATTATACACTTTCACTCTTTTTTGTCACTACATACTGTATAGGAGAAGTCATTTAATGAGCGGGGATTTTAATCTCCACTCATTAAAGCAAAATTCCATGCTGCAGGCAGAAATTAAGATTGGTGATGGGCTTCCTGTCATTAGATTGACCACAAAGTGTCTTGAAGCTCTAAAGCAAGCAGGTTTTGAGGTGAACATTGATTTCTTATGAGTTATCACCTTTCATGAGTATTATAGATTTATTTTTTTCGTTGAAGTTGTGGGATTTTATTATATAAAACGATGAGAGAAATAATAAGAACTTTGAATATTATTGATGTTCACTTGATGCTGATGTGATACAAAAGACTAAACACTAATCCCTATTTGTAGGGAAACATAGACTCAATCCTAAATAAATGGTGAATAATCTATGGTACACTAAGATTATAAACTGATCCTAAGAGATAATCTAAGGCACGCTAAGGTTGTAAACTTACCCTAGGGGATAAACCAAAATATTCCAGAATAATATCAAGATAATATCATATGCTGTTTTATTTTCTGACAAATTTTCTTTGAATATTTAAGAGATCAGCCTAATTGGCTAAATGGGAATTTCTTTTCTTTTTGTATGTGAAGGTGATATGGGAGAAAGATCTAGCATCGGACTCTCCTCTTCCTTGGTACTTGCCTAGAGACAAGAGTCACTTCTCACTTAGCAGCTTCTGTCTAACGGGCTCTGTTGGACACCTTTTCACCAGAAATATGGTATTGCTTCTGAATATAACAGCTAATGTATATTTCACTTTACGCACTTTAGGTACAATTTCCCTATTAAGAATTACTTGCAACACCAGAAACATGGCTCCTTGACTTAA

Protein sequence

>MS.gene056764.t1

MDNGFEDGQVASDMMASSQQRKKRAREFLSTLGDLIFAKIENVEVLTNGIEVKLQRNALSVIEPPTGLEEDDDLEFENTIWHGSDMASDNTQKSYKSLGSSHRSMSRSFSVDSQSKGSISMPRVDGLNTGFAFAQLLRAPQDYSQAIIRDQFPVPRLVVCAQHGSQARFLLAKLNPSATNAYKLLRTEIKKQMSTMDKVFAKLFIFTLFNYIVVICSDCDFKWKFLSHMRYVSITWLFERKAEIKIGDGLPVIRLTTKCLEALKQAGFEVIWEKDLASDSPLPWYNFPIKNYLQHQKHGSLT