Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056764.t1 | XP_013466058.1 | 84.9 | 86 | 6 | 1 | 45 | 123 | 70 | 155 | 1.10E-27 | 134 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056764.t1 | Q9LM02 | 88.9 | 45 | 5 | 0 | 241 | 285 | 217 | 261 | 4.5e-17 | 90.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056764.t1 | A0A072VEQ7 | 84.9 | 86 | 6 | 1 | 45 | 123 | 70 | 155 | 8.2e-28 | 134.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051125 | MS.gene056764 | 0.802784 | 4.76E-49 | -1.69E-46 |
MS.gene053359 | MS.gene056764 | 0.874754 | 5.28E-68 | -1.69E-46 |
MS.gene056764 | MS.gene067981 | 0.814522 | 1.48E-51 | -1.69E-46 |
MS.gene056764 | MS.gene073780 | 0.802975 | 4.35E-49 | -1.69E-46 |
MS.gene056764 | MS.gene07608 | 0.80426 | 2.35E-49 | -1.69E-46 |
MS.gene056764 | MS.gene08889 | 0.802111 | 6.55E-49 | -1.69E-46 |
MS.gene056764 | MS.gene25923 | 0.806447 | 8.19E-50 | -1.69E-46 |
MS.gene056764 | MS.gene26426 | 0.805351 | 1.39E-49 | -1.69E-46 |
MS.gene056764 | MS.gene26605 | 0.806022 | 1.01E-49 | -1.69E-46 |
MS.gene056764 | MS.gene27228 | 0.821935 | 3.10E-53 | -1.69E-46 |
MS.gene056764 | MS.gene28684 | 0.816869 | 4.43E-52 | -1.69E-46 |
MS.gene056764 | MS.gene33183 | 0.810915 | 9.09E-51 | -1.69E-46 |
MS.gene056764 | MS.gene35211 | 0.816622 | 5.03E-52 | -1.69E-46 |
MS.gene056764 | MS.gene42625 | 0.809243 | 2.08E-50 | -1.69E-46 |
MS.gene056764 | MS.gene46392 | 0.813905 | 2.02E-51 | -1.69E-46 |
MS.gene056764 | MS.gene49777 | 0.809953 | 1.47E-50 | -1.69E-46 |
MS.gene056764 | MS.gene50005 | 0.810778 | 9.73E-51 | -1.69E-46 |
MS.gene056764 | MS.gene54547 | 0.805354 | 1.39E-49 | -1.69E-46 |
MS.gene056764 | MS.gene62943 | 0.816291 | 5.96E-52 | -1.69E-46 |
MS.gene056764 | MS.gene70596 | 0.801849 | 7.42E-49 | -1.69E-46 |
MS.gene056764 | MS.gene71811 | 0.833118 | 6.41E-56 | -1.69E-46 |
MS.gene056764 | MS.gene73012 | 0.800477 | 1.42E-48 | -1.69E-46 |
MS.gene056764 | MS.gene74526 | 0.800769 | 1.23E-48 | -1.69E-46 |
MS.gene056764 | MS.gene77876 | 0.805449 | 1.33E-49 | -1.69E-46 |
MS.gene056764 | MS.gene86061 | 0.806654 | 7.41E-50 | -1.69E-46 |
MS.gene056764 | MS.gene88948 | 0.816416 | 5.59E-52 | -1.69E-46 |
MS.gene056764 | MS.gene89027 | 0.800166 | 1.64E-48 | -1.69E-46 |
MS.gene056764 | MS.gene89663 | 0.800346 | 1.50E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056764.t1 | MTR_1g021970 | 88.372 | 86 | 3 | 1 | 45 | 123 | 70 | 155 | 1.22e-44 | 151 |
MS.gene056764.t1 | MTR_1g021970 | 88.372 | 86 | 3 | 1 | 45 | 123 | 70 | 155 | 1.25e-44 | 151 |
MS.gene056764.t1 | MTR_3g111670 | 73.256 | 86 | 16 | 1 | 45 | 123 | 75 | 160 | 1.77e-34 | 125 |
MS.gene056764.t1 | MTR_3g032530 | 95.556 | 45 | 2 | 0 | 241 | 285 | 174 | 218 | 2.58e-22 | 94.7 |
MS.gene056764.t1 | MTR_3g032530 | 95.556 | 45 | 2 | 0 | 241 | 285 | 217 | 261 | 3.71e-22 | 95.1 |
MS.gene056764.t1 | MTR_3g084740 | 85.455 | 55 | 6 | 1 | 132 | 184 | 689 | 743 | 1.27e-21 | 95.5 |
MS.gene056764.t1 | MTR_8g011270 | 81.250 | 48 | 9 | 0 | 132 | 179 | 683 | 730 | 1.27e-17 | 83.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056764.t1 | AT5G13710 | 88.889 | 45 | 5 | 0 | 241 | 285 | 217 | 261 | 1.54e-20 | 90.5 |
MS.gene056764.t1 | AT5G13710 | 88.889 | 45 | 5 | 0 | 241 | 285 | 217 | 261 | 1.54e-20 | 90.5 |
MS.gene056764.t1 | AT1G19330 | 71.875 | 64 | 17 | 1 | 45 | 108 | 72 | 134 | 1.39e-19 | 86.3 |
MS.gene056764.t1 | AT1G75060 | 47.107 | 121 | 51 | 5 | 45 | 155 | 76 | 193 | 3.36e-19 | 85.1 |
MS.gene056764.t1 | AT1G05520 | 85.417 | 48 | 7 | 0 | 132 | 179 | 701 | 748 | 6.01e-19 | 87.4 |
MS.gene056764.t1 | AT4G14160 | 81.250 | 48 | 9 | 0 | 132 | 179 | 691 | 738 | 1.97e-18 | 85.9 |
MS.gene056764.t1 | AT4G14160 | 81.250 | 48 | 9 | 0 | 132 | 179 | 690 | 737 | 2.05e-18 | 85.9 |
MS.gene056764.t1 | AT3G23660 | 81.250 | 48 | 9 | 0 | 132 | 179 | 683 | 730 | 3.81e-18 | 85.1 |
MS.gene056764.t1 | AT3G23660 | 81.250 | 48 | 9 | 0 | 132 | 179 | 709 | 756 | 4.12e-18 | 85.1 |
MS.gene056764.t1 | AT1G75060 | 54.444 | 90 | 32 | 3 | 45 | 125 | 76 | 165 | 4.29e-18 | 81.3 |
MS.gene056764.t1 | AT1G19330 | 68.116 | 69 | 16 | 2 | 45 | 108 | 72 | 139 | 5.60e-18 | 82.0 |
MS.gene056764.t1 | AT1G75060 | 47.200 | 125 | 46 | 6 | 45 | 155 | 76 | 194 | 5.89e-18 | 81.6 |
MS.gene056764.t1 | AT1G19330 | 68.116 | 69 | 16 | 2 | 45 | 108 | 72 | 139 | 5.97e-18 | 81.6 |
MS.gene056764.t1 | AT2G21630 | 58.824 | 51 | 21 | 0 | 132 | 182 | 684 | 734 | 1.22e-13 | 71.6 |
MS.gene056764.t1 | AT5G43670 | 58.333 | 48 | 20 | 0 | 132 | 179 | 714 | 761 | 9.52e-11 | 63.2 |
Find 69 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTGCAAGTAATTCTTAAT+AGG | 0.239016 | 8.4:-66020832 | None:intergenic |
AAGTCAAGGAGCCATGTTTC+TGG | 0.262124 | 8.4:-66020855 | None:intergenic |
CGTGAATTCCTTTCTACATT+AGG | 0.280802 | 8.4:+66017686 | MS.gene056764:CDS |
CAAATGCATACAAGTTATTA+AGG | 0.299324 | 8.4:+66019496 | MS.gene056764:CDS |
CATTTGGCATGGATCAGATA+TGG | 0.299955 | 8.4:+66018218 | MS.gene056764:CDS |
GTTGCAAGTAATTCTTAATA+GGG | 0.376431 | 8.4:-66020831 | None:intergenic |
CAAAAGTCCTACAAATCATT+AGG | 0.394669 | 8.4:+66018459 | MS.gene056764:CDS |
CTCTGTTGATTCACAGTCCA+AGG | 0.394816 | 8.4:+66018512 | MS.gene056764:CDS |
AACATGGTTGTTTGAGAGAA+AGG | 0.399489 | 8.4:+66019662 | MS.gene056764:CDS |
TTGAATTTGAAAATACCATT+TGG | 0.400895 | 8.4:+66018202 | MS.gene056764:CDS |
TAGAGCTTCAAGACACTTTG+TGG | 0.411789 | 8.4:-66020169 | None:intergenic |
TCAGTTTCCTGTTCCTAGAT+TGG | 0.419726 | 8.4:+66019251 | MS.gene056764:CDS |
TTAGATGGACAATGGATTTG+AGG | 0.430824 | 8.4:+66017273 | None:intergenic |
ACTGATCTCTAATTATTGCC+TGG | 0.443181 | 8.4:-66019233 | None:intergenic |
TTGAAAATTTAGATGGACAA+TGG | 0.453902 | 8.4:+66017265 | None:intergenic |
AGGGGTCAATTTCTATGCCT+CGG | 0.464418 | 8.4:+66018532 | MS.gene056764:CDS |
AGATGATCCTAATGATTTGT+AGG | 0.467917 | 8.4:-66018466 | None:intergenic |
CTGATCTCTAATTATTGCCT+GGG | 0.469139 | 8.4:-66019232 | None:intergenic |
CATCGGACTCTCCTCTTCCT+TGG | 0.478580 | 8.4:+66020663 | MS.gene056764:CDS |
CACACTACCAATCTAGGAAC+AGG | 0.481351 | 8.4:-66019258 | None:intergenic |
TTTGAAAATACCATTTGGCA+TGG | 0.493311 | 8.4:+66018207 | MS.gene056764:CDS |
CAGCTTCACTTCAATACCAT+TGG | 0.494520 | 8.4:-66018121 | None:intergenic |
TGAGCACACACTACCAATCT+AGG | 0.494836 | 8.4:-66019264 | None:intergenic |
GGAAATTCTTATCACATATG+AGG | 0.499411 | 8.4:+66019628 | MS.gene056764:CDS |
GGGGTCAATTTCTATGCCTC+GGG | 0.500973 | 8.4:+66018533 | MS.gene056764:CDS |
GTCATCATCTTCCTCGAGAC+CGG | 0.503122 | 8.4:-66018178 | None:intergenic |
TCTGTTGATTCACAGTCCAA+GGG | 0.503809 | 8.4:+66018513 | MS.gene056764:CDS |
TTTGTATGTGAAGGTGATAT+GGG | 0.506681 | 8.4:+66020628 | MS.gene056764:intron |
CTAGGCAAGTACCAAGGAAG+AGG | 0.507019 | 8.4:-66020674 | None:intergenic |
GCAGAAATTAAGATTGGTGA+TGG | 0.508941 | 8.4:+66020126 | MS.gene056764:CDS |
AGGCATAGAAATTGACCCCT+TGG | 0.509524 | 8.4:-66018529 | None:intergenic |
ATTTCTATGCCTCGGGTGGA+CGG | 0.509754 | 8.4:+66018540 | MS.gene056764:CDS |
CTGCAGGCAGAAATTAAGAT+TGG | 0.511963 | 8.4:+66020120 | MS.gene056764:intron |
ATTTGGCATGGATCAGATAT+GGG | 0.516241 | 8.4:+66018219 | MS.gene056764:CDS |
CATATCTGATCCATGCCAAA+TGG | 0.516686 | 8.4:-66018217 | None:intergenic |
CCAATGCAGGACTGAACACC+GGG | 0.520427 | 8.4:+66018935 | MS.gene056764:intron |
ACAAGTAGCTTCTGATATGA+TGG | 0.524522 | 8.4:+66017300 | MS.gene056764:CDS |
TTAGATCACCTAATGTAGAA+AGG | 0.529305 | 8.4:-66017694 | None:intergenic |
AGTGTGATTGAACCACCAAC+CGG | 0.537912 | 8.4:+66018159 | MS.gene056764:CDS |
CTTTGCAAACACTTTATCCA+TGG | 0.541322 | 8.4:-66019544 | None:intergenic |
GTGTGCTCAACACGGTTCCC+AGG | 0.541647 | 8.4:+66019278 | MS.gene056764:CDS |
CTTGAAGCTCTAAAGCAAGC+AGG | 0.547652 | 8.4:+66020180 | MS.gene056764:CDS |
ATGGACAATGGATTTGAGGA+TGG | 0.554723 | 8.4:+66017277 | MS.gene056764:CDS |
GTCAATTTCTATGCCTCGGG+TGG | 0.558052 | 8.4:+66018536 | MS.gene056764:CDS |
TCTTCCTCGAGACCGGTTGG+TGG | 0.561538 | 8.4:-66018171 | None:intergenic |
TGCAAAGATTGAAAATGTTG+AGG | 0.562117 | 8.4:+66017721 | MS.gene056764:CDS |
GTTCTGATTGTGATTTCAAG+TGG | 0.565085 | 8.4:+66019607 | MS.gene056764:CDS |
AATCATTAGGATCATCTCAC+AGG | 0.568195 | 8.4:+66018472 | MS.gene056764:CDS |
ATTGCCTGGGAATAATCTTG+TGG | 0.569136 | 8.4:-66019219 | None:intergenic |
AATGTGCAGGTTCTTACCAA+TGG | 0.571599 | 8.4:+66018105 | MS.gene056764:intron |
TTGTATGCATTTGTTGCTGA+CGG | 0.574351 | 8.4:-66019486 | None:intergenic |
TCCAATGCAGGACTGAACAC+CGG | 0.575673 | 8.4:+66018934 | MS.gene056764:intron |
TCATCTTCCTCGAGACCGGT+TGG | 0.582498 | 8.4:-66018174 | None:intergenic |
TTTGTGGTCAATCTAATGAC+AGG | 0.586027 | 8.4:-66020153 | None:intergenic |
AGCTCCACAAGATTATTCCC+AGG | 0.586985 | 8.4:+66019215 | MS.gene056764:CDS |
AAAGAAACAAATGTCTACCA+TGG | 0.595136 | 8.4:+66019527 | MS.gene056764:CDS |
CAGAAATTAAGATTGGTGAT+GGG | 0.600994 | 8.4:+66020127 | MS.gene056764:CDS |
TACTTGCAACACCAGAAACA+TGG | 0.604640 | 8.4:+66020844 | MS.gene056764:CDS |
TGAACCACCAACCGGTCTCG+AGG | 0.615263 | 8.4:+66018167 | MS.gene056764:CDS |
GTATTGAAGTGAAGCTGCAG+AGG | 0.621922 | 8.4:+66018127 | MS.gene056764:CDS |
GGACTGTGAATCAACAGAGA+AGG | 0.625537 | 8.4:-66018508 | None:intergenic |
TGAGGTATGTCAGCATAACA+TGG | 0.642084 | 8.4:+66019646 | MS.gene056764:CDS |
ATGGGAGAAAGATCTAGCAT+CGG | 0.642273 | 8.4:+66020646 | MS.gene056764:CDS |
AAGCCTGTATGATTAAGTCA+AGG | 0.651474 | 8.4:-66020869 | None:intergenic |
GTATTTATACCGTCCACCCG+AGG | 0.657586 | 8.4:-66018549 | None:intergenic |
GAGATGACTGCATACAAACC+CGG | 0.674589 | 8.4:-66018953 | None:intergenic |
CTGTTGATTCACAGTCCAAG+GGG | 0.680824 | 8.4:+66018514 | MS.gene056764:CDS |
TTGGTAGTGTGTGCTCAACA+CGG | 0.685700 | 8.4:+66019270 | MS.gene056764:CDS |
TGATGGCAAGCAGTCAACAG+AGG | 0.701292 | 8.4:+66017317 | MS.gene056764:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCTAATAATAATAAAATGTT+AGG | + | chr8.4:66019990-66020009 | MS.gene056764:intron | 10.0% |
!!! | AAGTTTTTTCATATTTTATT+TGG | + | chr8.4:66017976-66017995 | MS.gene056764:intron | 10.0% |
!! | ATATTATCTTGATATTATTC+TGG | - | chr8.4:66020525-66020544 | None:intergenic | 15.0% |
!! | TAGAAAAGATTGAATAAAAT+TGG | - | chr8.4:66017837-66017856 | None:intergenic | 15.0% |
!! | TTAAAAATTGAAATTGCATA+AGG | - | chr8.4:66018718-66018737 | None:intergenic | 15.0% |
!!! | TGTTAGTTTTTTTTTTTTTG+TGG | + | chr8.4:66019072-66019091 | MS.gene056764:intron | 15.0% |
!!! | TTTATTTTTCACTTCATTTT+AGG | + | chr8.4:66018295-66018314 | MS.gene056764:intron | 15.0% |
!! | AAATAAAAACTTGGAAAGAT+AGG | - | chr8.4:66018282-66018301 | None:intergenic | 20.0% |
!! | AAATCTATAATACTCATGAA+AGG | - | chr8.4:66020241-66020260 | None:intergenic | 20.0% |
!! | AATAAATGGTGAATAATCTA+TGG | + | chr8.4:66020413-66020432 | MS.gene056764:intron | 20.0% |
!! | AGATTATTCACCATTTATTT+AGG | - | chr8.4:66020412-66020431 | None:intergenic | 20.0% |
!! | ATAAAACCCTAAATAAAAGA+GGG | - | chr8.4:66017559-66017578 | None:intergenic | 20.0% |
!! | GAAAGGAATAAGAAAAATAA+TGG | - | chr8.4:66019947-66019966 | None:intergenic | 20.0% |
!! | TGAAGTGAAAAATAAAAACT+TGG | - | chr8.4:66018291-66018310 | None:intergenic | 20.0% |
!! | TTGAATTTGAAAATACCATT+TGG | + | chr8.4:66018202-66018221 | MS.gene056764:CDS | 20.0% |
!!! | AAATGGTATTTTCAAATTCA+AGG | - | chr8.4:66018203-66018222 | None:intergenic | 20.0% |
!!! | AATTAATTTGTTGATGATTG+AGG | + | chr8.4:66018629-66018648 | MS.gene056764:intron | 20.0% |
!!! | ATTAATTTGTTGATGATTGA+GGG | + | chr8.4:66018630-66018649 | MS.gene056764:intron | 20.0% |
!!! | CAATTTCAATTTTTAATGAG+TGG | + | chr8.4:66018722-66018741 | MS.gene056764:intron | 20.0% |
!!! | GATATTATTCTGGAATATTT+TGG | - | chr8.4:66020515-66020534 | None:intergenic | 20.0% |
!!! | GATGTTTTAATATGACAATA+TGG | + | chr8.4:66019853-66019872 | MS.gene056764:intron | 20.0% |
!!! | TATTTTTTTCTCTTCTCTAA+TGG | + | chr8.4:66018577-66018596 | MS.gene056764:intron | 20.0% |
!!! | TTCATTGATGTTTTTTTAAC+AGG | + | chr8.4:66019437-66019456 | MS.gene056764:intron | 20.0% |
! | AAATCTTGACTCAAACAAAA+TGG | - | chr8.4:66019392-66019411 | None:intergenic | 25.0% |
! | AATCTTGACTCAAACAAAAT+GGG | - | chr8.4:66019391-66019410 | None:intergenic | 25.0% |
! | ATATGGGTAAGTTTCAATTT+GGG | + | chr8.4:66018235-66018254 | MS.gene056764:intron | 25.0% |
! | ATTAAAACATCAACATAAGC+TGG | - | chr8.4:66017898-66017917 | None:intergenic | 25.0% |
! | CAAATGCATACAAGTTATTA+AGG | + | chr8.4:66019496-66019515 | MS.gene056764:CDS | 25.0% |
! | CATAAAACCCTAAATAAAAG+AGG | - | chr8.4:66017560-66017579 | None:intergenic | 25.0% |
! | GTAACAACAATTTCTTTAGT+AGG | - | chr8.4:66018978-66018997 | None:intergenic | 25.0% |
! | GTTGCAAGTAATTCTTAATA+GGG | - | chr8.4:66020834-66020853 | None:intergenic | 25.0% |
! | TAGACTCAATCCTAAATAAA+TGG | + | chr8.4:66020399-66020418 | MS.gene056764:intron | 25.0% |
! | TAGGAACTGAAAACTAAATT+TGG | + | chr8.4:66017458-66017477 | MS.gene056764:intron | 25.0% |
! | TGTTGCAAGTAATTCTTAAT+AGG | - | chr8.4:66020835-66020854 | None:intergenic | 25.0% |
! | TTTCATATACAATTGTTGCA+TGG | + | chr8.4:66018055-66018074 | MS.gene056764:intron | 25.0% |
!! | AAGTCTTTTCTATCTTTGAA+AGG | + | chr8.4:66019686-66019705 | MS.gene056764:intron | 25.0% |
!! | CTGTATATAACAGTTCTTTT+AGG | + | chr8.4:66019920-66019939 | MS.gene056764:intron | 25.0% |
!! | GAGTCAAGATTTTTCATAAT+AGG | + | chr8.4:66019400-66019419 | MS.gene056764:intron | 25.0% |
!! | TAAATCTGGTTTAAGAATCA+AGG | + | chr8.4:66019795-66019814 | MS.gene056764:intron | 25.0% |
!! | TCTTTTCTTTTTGTATGTGA+AGG | + | chr8.4:66020619-66020638 | MS.gene056764:intron | 25.0% |
!!! | AAAGTTTTGAGCATTAAATC+TGG | + | chr8.4:66019781-66019800 | MS.gene056764:intron | 25.0% |
!!! | AGTCTTTTCTATCTTTGAAA+GGG | + | chr8.4:66019687-66019706 | MS.gene056764:intron | 25.0% |
!!! | ATTTTTTTCGTTGAAGTTGT+GGG | + | chr8.4:66020261-66020280 | MS.gene056764:intron | 25.0% |
!!! | CTCTTTTATTTAGGGTTTTA+TGG | + | chr8.4:66017558-66017577 | MS.gene056764:intron | 25.0% |
!!! | TATTTTTTTCGTTGAAGTTG+TGG | + | chr8.4:66020260-66020279 | MS.gene056764:intron | 25.0% |
AAAAAACATCAATGAAACCC+TGG | - | chr8.4:66019433-66019452 | None:intergenic | 30.0% | |
AAACACTAATCCCTATTTGT+AGG | + | chr8.4:66020370-66020389 | MS.gene056764:intron | 30.0% | |
AAAGAAACAAATGTCTACCA+TGG | + | chr8.4:66019527-66019546 | MS.gene056764:CDS | 30.0% | |
AAATTCCCATTTAGCCAATT+AGG | - | chr8.4:66020600-66020619 | None:intergenic | 30.0% | |
AACACTAATCCCTATTTGTA+GGG | + | chr8.4:66020371-66020390 | MS.gene056764:intron | 30.0% | |
AAGAATAGTGAGAGTAGAAT+TGG | + | chr8.4:66017592-66017611 | MS.gene056764:intron | 30.0% | |
ACTTTCACAGTGATTTAGTT+AGG | + | chr8.4:66017439-66017458 | MS.gene056764:intron | 30.0% | |
AGTGAAAGCAAAAGTAAGAA+AGG | - | chr8.4:66019964-66019983 | None:intergenic | 30.0% | |
ATAAGAAACAATACTGACCT+GGG | - | chr8.4:66019298-66019317 | None:intergenic | 30.0% | |
ATATACAATTGTTGCATGGA+TGG | + | chr8.4:66018059-66018078 | MS.gene056764:intron | 30.0% | |
ATCTTGACTCAAACAAAATG+GGG | - | chr8.4:66019390-66019409 | None:intergenic | 30.0% | |
ATTTAAGAGATCAGCCTAAT+TGG | + | chr8.4:66020583-66020602 | MS.gene056764:intron | 30.0% | |
CAAAAGTCCTACAAATCATT+AGG | + | chr8.4:66018459-66018478 | MS.gene056764:CDS | 30.0% | |
CAAAATGCAATAACAGTGAA+TGG | - | chr8.4:66018847-66018866 | None:intergenic | 30.0% | |
GATATGGGTAAGTTTCAATT+TGG | + | chr8.4:66018234-66018253 | MS.gene056764:intron | 30.0% | |
GGAAATTCTTATCACATATG+AGG | + | chr8.4:66019628-66019647 | MS.gene056764:CDS | 30.0% | |
TATGCAAATAAACCAATGCA+TGG | - | chr8.4:66019714-66019733 | None:intergenic | 30.0% | |
TATTTCACTTTACGCACTTT+AGG | + | chr8.4:66020800-66020819 | MS.gene056764:intron | 30.0% | |
TCATAATAGGAAACTTACCA+GGG | + | chr8.4:66019413-66019432 | MS.gene056764:intron | 30.0% | |
TCTATGTTTCCCTACAAATA+GGG | - | chr8.4:66020383-66020402 | None:intergenic | 30.0% | |
TGATCCTAAGAGATAATCTA+AGG | + | chr8.4:66020454-66020473 | MS.gene056764:intron | 30.0% | |
TGCAAAGATTGAAAATGTTG+AGG | + | chr8.4:66017721-66017740 | MS.gene056764:CDS | 30.0% | |
TTAGATCACCTAATGTAGAA+AGG | - | chr8.4:66017697-66017716 | None:intergenic | 30.0% | |
TTCATAATAGGAAACTTACC+AGG | + | chr8.4:66019412-66019431 | MS.gene056764:intron | 30.0% | |
TTGTTTCATGAAAAATGTGC+AGG | + | chr8.4:66018092-66018111 | MS.gene056764:intron | 30.0% | |
TTTGAAAATACCATTTGGCA+TGG | + | chr8.4:66018207-66018226 | MS.gene056764:CDS | 30.0% | |
TTTGTATGTGAAGGTGATAT+GGG | + | chr8.4:66020628-66020647 | MS.gene056764:intron | 30.0% | |
TTTGTCACTACATACTGTAT+AGG | + | chr8.4:66020040-66020059 | MS.gene056764:intron | 30.0% | |
! | ACCTTGTGTGTTTAAAATAC+AGG | + | chr8.4:66017661-66017680 | MS.gene056764:intron | 30.0% |
! | AGATGATCCTAATGATTTGT+AGG | - | chr8.4:66018469-66018488 | None:intergenic | 30.0% |
! | CAGAAATTAAGATTGGTGAT+GGG | + | chr8.4:66020127-66020146 | MS.gene056764:CDS | 30.0% |
! | TGGAATTTTGCTTTAATGAG+TGG | - | chr8.4:66020098-66020117 | None:intergenic | 30.0% |
! | TTTTGTATGTGAAGGTGATA+TGG | + | chr8.4:66020627-66020646 | MS.gene056764:intron | 30.0% |
! | TTTTTGTGAGCAGAATTTTC+AGG | - | chr8.4:66019000-66019019 | None:intergenic | 30.0% |
!! | ATACCATATTTCTGGTGAAA+AGG | - | chr8.4:66020754-66020773 | None:intergenic | 30.0% |
!!! | AATATTTTGGTTTATCCCCT+AGG | - | chr8.4:66020502-66020521 | None:intergenic | 30.0% |
!!! | ATATTTTGGTTTATCCCCTA+GGG | - | chr8.4:66020501-66020520 | None:intergenic | 30.0% |
!!! | TGATGTGTAGTTTTGAAGAA+TGG | + | chr8.4:66018801-66018820 | MS.gene056764:intron | 30.0% |
AAACAAAATGGGGGAAAACA+CGG | - | chr8.4:66019380-66019399 | None:intergenic | 35.0% | |
AAATAAAAGAGGGCTCATCA+AGG | - | chr8.4:66017549-66017568 | None:intergenic | 35.0% | |
AACATGGTTGTTTGAGAGAA+AGG | + | chr8.4:66019662-66019681 | MS.gene056764:CDS | 35.0% | |
AAGGTTGTAAACTTACCCTA+GGG | + | chr8.4:66020483-66020502 | MS.gene056764:intron | 35.0% | |
AATCATTAGGATCATCTCAC+AGG | + | chr8.4:66018472-66018491 | MS.gene056764:CDS | 35.0% | |
ACAAGTAGCTTCTGATATGA+TGG | + | chr8.4:66017300-66017319 | MS.gene056764:CDS | 35.0% | |
ACTGATCTCTAATTATTGCC+TGG | - | chr8.4:66019236-66019255 | None:intergenic | 35.0% | |
AGACTTACTCTCATACTTGT+AGG | - | chr8.4:66019881-66019900 | None:intergenic | 35.0% | |
AGCACAAACAAATCAGCAAT+AGG | - | chr8.4:66018409-66018428 | None:intergenic | 35.0% | |
AGGAGAAGTCATTTAATGAG+CGG | + | chr8.4:66020060-66020079 | MS.gene056764:intron | 35.0% | |
AGGTATGTTAGTAGAAATCC+TGG | - | chr8.4:66017645-66017664 | None:intergenic | 35.0% | |
ATCAGCCTAATTGGCTAAAT+GGG | + | chr8.4:66020592-66020611 | MS.gene056764:intron | 35.0% | |
ATGCTTCTGATCCTTTGATT+TGG | + | chr8.4:66017519-66017538 | MS.gene056764:intron | 35.0% | |
ATTTGGCATGGATCAGATAT+GGG | + | chr8.4:66018219-66018238 | MS.gene056764:CDS | 35.0% | |
CAGAAGCAATACCATATTTC+TGG | - | chr8.4:66020762-66020781 | None:intergenic | 35.0% | |
CAGCAATAGGGAAAATCAAA+AGG | - | chr8.4:66018396-66018415 | None:intergenic | 35.0% | |
CAGTCAACAGAGGAAAAAAA+GGG | + | chr8.4:66017327-66017346 | MS.gene056764:CDS | 35.0% | |
CGTGAATTCCTTTCTACATT+AGG | + | chr8.4:66017686-66017705 | MS.gene056764:CDS | 35.0% | |
CTGATCTCTAATTATTGCCT+GGG | - | chr8.4:66019235-66019254 | None:intergenic | 35.0% | |
CTTTGCAAACACTTTATCCA+TGG | - | chr8.4:66019547-66019566 | None:intergenic | 35.0% | |
GATAAGAAACAATACTGACC+TGG | - | chr8.4:66019299-66019318 | None:intergenic | 35.0% | |
GCACAAACAAATCAGCAATA+GGG | - | chr8.4:66018408-66018427 | None:intergenic | 35.0% | |
GCAGAAATTAAGATTGGTGA+TGG | + | chr8.4:66020126-66020145 | MS.gene056764:CDS | 35.0% | |
GTAATTGATGTTTCCAATGC+AGG | + | chr8.4:66018922-66018941 | MS.gene056764:intron | 35.0% | |
GTCTATGTTTCCCTACAAAT+AGG | - | chr8.4:66020384-66020403 | None:intergenic | 35.0% | |
GTTCTGATTGTGATTTCAAG+TGG | + | chr8.4:66019607-66019626 | MS.gene056764:CDS | 35.0% | |
TAAGGTTGTAAACTTACCCT+AGG | + | chr8.4:66020482-66020501 | MS.gene056764:intron | 35.0% | |
TCTTGACTCAAACAAAATGG+GGG | - | chr8.4:66019389-66019408 | None:intergenic | 35.0% | |
TGCATTTCTTCATTGTGTAC+TGG | + | chr8.4:66017749-66017768 | MS.gene056764:intron | 35.0% | |
TGCTCATGGTATGAATACTT+TGG | - | chr8.4:66019321-66019340 | None:intergenic | 35.0% | |
TGGTTTAAGAATCAAGGACT+AGG | + | chr8.4:66019801-66019820 | MS.gene056764:intron | 35.0% | |
TTGAATCAGCATAGCTGATA+AGG | - | chr8.4:66017803-66017822 | None:intergenic | 35.0% | |
TTTGTGGTCAATCTAATGAC+AGG | - | chr8.4:66020156-66020175 | None:intergenic | 35.0% | |
! | ACACCTTTTCACCAGAAATA+TGG | + | chr8.4:66020748-66020767 | MS.gene056764:intron | 35.0% |
! | ACTAACTTTTCCACACACAA+GGG | - | chr8.4:66018904-66018923 | None:intergenic | 35.0% |
! | ATGGTGGAAATAGTTGATTC+CGG | + | chr8.4:66018820-66018839 | MS.gene056764:intron | 35.0% |
! | TACTAACTTTTCCACACACA+AGG | - | chr8.4:66018905-66018924 | None:intergenic | 35.0% |
! | TGCTTCTGATCCTTTGATTT+GGG | + | chr8.4:66017520-66017539 | MS.gene056764:intron | 35.0% |
! | TTGTATGCATTTGTTGCTGA+CGG | - | chr8.4:66019489-66019508 | None:intergenic | 35.0% |
!! | CTGACTTTAATTTGTGGTAC+AGG | + | chr8.4:66019173-66019192 | MS.gene056764:intron | 35.0% |
!! | GATGAGCCCTCTTTTATTTA+GGG | + | chr8.4:66017550-66017569 | MS.gene056764:intron | 35.0% |
!! | GCCTGTATTTTAAACACACA+AGG | - | chr8.4:66017665-66017684 | None:intergenic | 35.0% |
!! | TGATGAGCCCTCTTTTATTT+AGG | + | chr8.4:66017549-66017568 | MS.gene056764:intron | 35.0% |
!!! | TGTGTAGTTTTGAAGAATGG+TGG | + | chr8.4:66018804-66018823 | MS.gene056764:intron | 35.0% |
!!! | TTTTTTCCTACTTCTGTTCC+AGG | + | chr8.4:66017624-66017643 | MS.gene056764:intron | 35.0% |
AAAGCAAAATTCCATGCTGC+AGG | + | chr8.4:66020104-66020123 | MS.gene056764:intron | 40.0% | |
AATCACTGTGAAAGTGAGAG+TGG | - | chr8.4:66017434-66017453 | None:intergenic | 40.0% | |
AATGTGCAGGTTCTTACCAA+TGG | + | chr8.4:66018105-66018124 | MS.gene056764:intron | 40.0% | |
ACACACATCAGTATTGCTCA+TGG | - | chr8.4:66019335-66019354 | None:intergenic | 40.0% | |
ACTTAGCAGCTTCTGTCTAA+CGG | + | chr8.4:66020715-66020734 | MS.gene056764:intron | 40.0% | |
AGAAATCCTGGAACAGAAGT+AGG | - | chr8.4:66017633-66017652 | None:intergenic | 40.0% | |
AGGTTGTAAACTTACCCTAG+GGG | + | chr8.4:66020484-66020503 | MS.gene056764:intron | 40.0% | |
ATCAAGGACTAGGAGAATGA+AGG | + | chr8.4:66019811-66019830 | MS.gene056764:intron | 40.0% | |
ATCAAGGACTCCCAAATCAA+AGG | - | chr8.4:66017533-66017552 | None:intergenic | 40.0% | |
ATGGGAGAAAGATCTAGCAT+CGG | + | chr8.4:66020646-66020665 | MS.gene056764:CDS | 40.0% | |
ATTGCCTGGGAATAATCTTG+TGG | - | chr8.4:66019222-66019241 | None:intergenic | 40.0% | |
CAGAGAGAGAAAAGGAATAC+TGG | - | chr8.4:66019150-66019169 | None:intergenic | 40.0% | |
CAGCTTCACTTCAATACCAT+TGG | - | chr8.4:66018124-66018143 | None:intergenic | 40.0% | |
CATATCTGATCCATGCCAAA+TGG | - | chr8.4:66018220-66018239 | None:intergenic | 40.0% | |
CATTTGGCATGGATCAGATA+TGG | + | chr8.4:66018218-66018237 | MS.gene056764:CDS | 40.0% | |
CGTGCCTTAGATTATCTCTT+AGG | - | chr8.4:66020461-66020480 | None:intergenic | 40.0% | |
CTGCAGGCAGAAATTAAGAT+TGG | + | chr8.4:66020120-66020139 | MS.gene056764:intron | 40.0% | |
GAGAAGTCATTTAATGAGCG+GGG | + | chr8.4:66020062-66020081 | MS.gene056764:intron | 40.0% | |
GATCAGCCTAATTGGCTAAA+TGG | + | chr8.4:66020591-66020610 | MS.gene056764:intron | 40.0% | |
GCAGTCAACAGAGGAAAAAA+AGG | + | chr8.4:66017326-66017345 | MS.gene056764:CDS | 40.0% | |
GGAGAAGTCATTTAATGAGC+GGG | + | chr8.4:66020061-66020080 | MS.gene056764:intron | 40.0% | |
TACTTGCAACACCAGAAACA+TGG | + | chr8.4:66020844-66020863 | MS.gene056764:CDS | 40.0% | |
TAGAGCTTCAAGACACTTTG+TGG | - | chr8.4:66020172-66020191 | None:intergenic | 40.0% | |
TCAGTTTCCTGTTCCTAGAT+TGG | + | chr8.4:66019251-66019270 | MS.gene056764:CDS | 40.0% | |
TGAGGTATGTCAGCATAACA+TGG | + | chr8.4:66019646-66019665 | MS.gene056764:CDS | 40.0% | |
TGCAATAACAGTGAATGGTC+CGG | - | chr8.4:66018842-66018861 | None:intergenic | 40.0% | |
! | AGATAATCTAAGGCACGCTA+AGG | + | chr8.4:66020464-66020483 | MS.gene056764:intron | 40.0% |
! | ATGGACAATGGATTTGAGGA+TGG | + | chr8.4:66017277-66017296 | MS.gene056764:CDS | 40.0% |
! | ATTTAGAGTACCCTTGTGTG+TGG | + | chr8.4:66018891-66018910 | MS.gene056764:intron | 40.0% |
!! | CTGCTGCTGACTTTAATTTG+TGG | + | chr8.4:66019167-66019186 | MS.gene056764:intron | 40.0% |
!! | TCTAAAGCAAGCAGGTTTTG+AGG | + | chr8.4:66020188-66020207 | MS.gene056764:CDS | 40.0% |
!! | TCTGTTGATTCACAGTCCAA+GGG | + | chr8.4:66018513-66018532 | MS.gene056764:CDS | 40.0% |
!!! | CTTAGAGGCATTTTCGTAGT+TGG | + | chr8.4:66019106-66019125 | MS.gene056764:intron | 40.0% |
AAGTCAAGGAGCCATGTTTC+TGG | - | chr8.4:66020858-66020877 | None:intergenic | 45.0% | |
AGCTCCACAAGATTATTCCC+AGG | + | chr8.4:66019215-66019234 | MS.gene056764:CDS | 45.0% | |
AGGCATAGAAATTGACCCCT+TGG | - | chr8.4:66018532-66018551 | None:intergenic | 45.0% | |
AGGGGTCAATTTCTATGCCT+CGG | + | chr8.4:66018532-66018551 | MS.gene056764:CDS | 45.0% | |
AGTGTGATTGAACCACCAAC+CGG | + | chr8.4:66018159-66018178 | MS.gene056764:CDS | 45.0% | |
CACACTACCAATCTAGGAAC+AGG | - | chr8.4:66019261-66019280 | None:intergenic | 45.0% | |
CTTAATTTCTGCCTGCAGCA+TGG | - | chr8.4:66020118-66020137 | None:intergenic | 45.0% | |
CTTAGCAGCTTCTGTCTAAC+GGG | + | chr8.4:66020716-66020735 | MS.gene056764:intron | 45.0% | |
GAGAAGTGACTCTTGTCTCT+AGG | - | chr8.4:66020695-66020714 | None:intergenic | 45.0% | |
GAGATGACTGCATACAAACC+CGG | - | chr8.4:66018956-66018975 | None:intergenic | 45.0% | |
GGACTGTGAATCAACAGAGA+AGG | - | chr8.4:66018511-66018530 | None:intergenic | 45.0% | |
GTATTGAAGTGAAGCTGCAG+AGG | + | chr8.4:66018127-66018146 | MS.gene056764:CDS | 45.0% | |
TGAGCACACACTACCAATCT+AGG | - | chr8.4:66019267-66019286 | None:intergenic | 45.0% | |
TGTGAAAGTGAGAGTGGTGA+TGG | - | chr8.4:66017428-66017447 | None:intergenic | 45.0% | |
TTGTCTCTAGGCAAGTACCA+AGG | - | chr8.4:66020683-66020702 | None:intergenic | 45.0% | |
! | CTTTGAAAGGGTCCATGCAT+TGG | + | chr8.4:66019699-66019718 | MS.gene056764:intron | 45.0% |
!! | CTCTGTTGATTCACAGTCCA+AGG | + | chr8.4:66018512-66018531 | MS.gene056764:CDS | 45.0% |
!! | CTGTTGATTCACAGTCCAAG+GGG | + | chr8.4:66018514-66018533 | MS.gene056764:CDS | 45.0% |
!! | CTTGAAGCTCTAAAGCAAGC+AGG | + | chr8.4:66020180-66020199 | MS.gene056764:CDS | 45.0% |
!! | TTGGTAGTGTGTGCTCAACA+CGG | + | chr8.4:66019270-66019289 | MS.gene056764:CDS | 45.0% |
ATTTCTATGCCTCGGGTGGA+CGG | + | chr8.4:66018540-66018559 | MS.gene056764:CDS | 50.0% | |
CTAGGCAAGTACCAAGGAAG+AGG | - | chr8.4:66020677-66020696 | None:intergenic | 50.0% | |
GGGGTCAATTTCTATGCCTC+GGG | + | chr8.4:66018533-66018552 | MS.gene056764:CDS | 50.0% | |
GTATTTATACCGTCCACCCG+AGG | - | chr8.4:66018552-66018571 | None:intergenic | 50.0% | |
GTCAATTTCTATGCCTCGGG+TGG | + | chr8.4:66018536-66018555 | MS.gene056764:CDS | 50.0% | |
GTCAGCAGCAGAGAGAGAAA+AGG | - | chr8.4:66019158-66019177 | None:intergenic | 50.0% | |
GTCATCATCTTCCTCGAGAC+CGG | - | chr8.4:66018181-66018200 | None:intergenic | 50.0% | |
TCCAATGCAGGACTGAACAC+CGG | + | chr8.4:66018934-66018953 | MS.gene056764:intron | 50.0% | |
TGATGGCAAGCAGTCAACAG+AGG | + | chr8.4:66017317-66017336 | MS.gene056764:CDS | 50.0% | |
! | GTGGACGTTGCTTTGCTTAG+AGG | + | chr8.4:66019091-66019110 | MS.gene056764:intron | 50.0% |
!! | GAAAGTGAGAGTGGTGATGG+AGG | - | chr8.4:66017425-66017444 | None:intergenic | 50.0% |
!! | TTCTGTCTAACGGGCTCTGT+TGG | + | chr8.4:66020725-66020744 | MS.gene056764:intron | 50.0% |
CATCGGACTCTCCTCTTCCT+TGG | + | chr8.4:66020663-66020682 | MS.gene056764:CDS | 55.0% | |
CCAATGCAGGACTGAACACC+GGG | + | chr8.4:66018935-66018954 | MS.gene056764:intron | 55.0% | |
TCATCTTCCTCGAGACCGGT+TGG | - | chr8.4:66018177-66018196 | None:intergenic | 55.0% | |
CCCGGTGTTCAGTCCTGCAT+TGG | - | chr8.4:66018938-66018957 | None:intergenic | 60.0% | |
GTGTGCTCAACACGGTTCCC+AGG | + | chr8.4:66019278-66019297 | MS.gene056764:CDS | 60.0% | |
TCTTCCTCGAGACCGGTTGG+TGG | - | chr8.4:66018174-66018193 | None:intergenic | 60.0% | |
TGAACCACCAACCGGTCTCG+AGG | + | chr8.4:66018167-66018186 | MS.gene056764:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 66017277 | 66020879 | 66017277 | ID=MS.gene056764 |
chr8.4 | mRNA | 66017277 | 66020879 | 66017277 | ID=MS.gene056764.t1;Parent=MS.gene056764 |
chr8.4 | exon | 66017277 | 66017348 | 66017277 | ID=MS.gene056764.t1.exon1;Parent=MS.gene056764.t1 |
chr8.4 | CDS | 66017277 | 66017348 | 66017277 | ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1 |
chr8.4 | exon | 66017683 | 66017742 | 66017683 | ID=MS.gene056764.t1.exon2;Parent=MS.gene056764.t1 |
chr8.4 | CDS | 66017683 | 66017742 | 66017683 | ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1 |
chr8.4 | exon | 66018114 | 66018240 | 66018114 | ID=MS.gene056764.t1.exon3;Parent=MS.gene056764.t1 |
chr8.4 | CDS | 66018114 | 66018240 | 66018114 | ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1 |
chr8.4 | exon | 66018445 | 66018561 | 66018445 | ID=MS.gene056764.t1.exon4;Parent=MS.gene056764.t1 |
chr8.4 | CDS | 66018445 | 66018561 | 66018445 | ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1 |
chr8.4 | exon | 66018944 | 66018960 | 66018944 | ID=MS.gene056764.t1.exon5;Parent=MS.gene056764.t1 |
chr8.4 | CDS | 66018944 | 66018960 | 66018944 | ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1 |
chr8.4 | exon | 66019195 | 66019299 | 66019195 | ID=MS.gene056764.t1.exon6;Parent=MS.gene056764.t1 |
chr8.4 | CDS | 66019195 | 66019299 | 66019195 | ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1 |
chr8.4 | exon | 66019459 | 66019683 | 66019459 | ID=MS.gene056764.t1.exon7;Parent=MS.gene056764.t1 |
chr8.4 | CDS | 66019459 | 66019683 | 66019459 | ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1 |
chr8.4 | exon | 66020126 | 66020209 | 66020126 | ID=MS.gene056764.t1.exon8;Parent=MS.gene056764.t1 |
chr8.4 | CDS | 66020126 | 66020209 | 66020126 | ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1 |
chr8.4 | exon | 66020641 | 66020684 | 66020641 | ID=MS.gene056764.t1.exon9;Parent=MS.gene056764.t1 |
chr8.4 | CDS | 66020641 | 66020684 | 66020641 | ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1 |
chr8.4 | exon | 66020822 | 66020879 | 66020822 | ID=MS.gene056764.t1.exon10;Parent=MS.gene056764.t1 |
chr8.4 | CDS | 66020822 | 66020879 | 66020822 | ID=cds.MS.gene056764.t1;Parent=MS.gene056764.t1 |
Gene Sequence |
Protein sequence |