Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27720.t1 | RHN46919.1 | 97.3 | 186 | 5 | 0 | 1 | 186 | 190 | 375 | 9.40E-104 | 386.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27720.t1 | A0A1D6GNR3 | 56.9 | 160 | 64 | 3 | 28 | 186 | 40 | 195 | 9.1e-47 | 188.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27720.t1 | G7L3L3 | 97.3 | 186 | 5 | 0 | 1 | 186 | 1 | 186 | 6.8e-104 | 386.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene27720 | 0.86319 | 2.97E-64 | -1.69E-46 |
| MS.gene052447 | MS.gene27720 | 0.847788 | 9.27E-60 | -1.69E-46 |
| MS.gene053875 | MS.gene27720 | 0.802427 | 5.64E-49 | -1.69E-46 |
| MS.gene054174 | MS.gene27720 | 0.872083 | 4.18E-67 | -1.69E-46 |
| MS.gene054175 | MS.gene27720 | 0.879275 | 1.42E-69 | -1.69E-46 |
| MS.gene054484 | MS.gene27720 | 0.868086 | 8.48E-66 | -1.69E-46 |
| MS.gene055056 | MS.gene27720 | 0.801404 | 9.15E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene27720 | 0.807338 | 5.31E-50 | -1.69E-46 |
| MS.gene058580 | MS.gene27720 | 0.802063 | 6.70E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene27720 | 0.807895 | 4.04E-50 | -1.69E-46 |
| MS.gene059276 | MS.gene27720 | 0.801956 | 7.05E-49 | -1.69E-46 |
| MS.gene059458 | MS.gene27720 | 0.826992 | 2.00E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27720.t1 | MTR_7g076970 | 97.312 | 186 | 5 | 0 | 1 | 186 | 1 | 186 | 9.15e-137 | 384 |
| MS.gene27720.t1 | MTR_7g077090 | 93.548 | 186 | 12 | 0 | 1 | 186 | 1 | 186 | 3.82e-133 | 375 |
| MS.gene27720.t1 | MTR_7g076770 | 87.097 | 186 | 24 | 0 | 1 | 186 | 1 | 186 | 9.62e-125 | 354 |
| MS.gene27720.t1 | MTR_7g077010 | 91.935 | 186 | 15 | 0 | 1 | 186 | 1 | 186 | 2.82e-121 | 345 |
| MS.gene27720.t1 | MTR_7g076920 | 88.172 | 186 | 21 | 1 | 1 | 186 | 1 | 185 | 2.94e-121 | 345 |
| MS.gene27720.t1 | MTR_7g012350 | 87.097 | 186 | 23 | 1 | 1 | 186 | 1 | 185 | 3.28e-121 | 345 |
| MS.gene27720.t1 | MTR_4g036410 | 98.742 | 159 | 2 | 0 | 28 | 186 | 9 | 167 | 2.48e-118 | 337 |
| MS.gene27720.t1 | MTR_7g012340 | 83.333 | 186 | 30 | 1 | 1 | 186 | 1 | 185 | 6.63e-116 | 332 |
| MS.gene27720.t1 | MTR_7g076990 | 84.946 | 186 | 27 | 1 | 1 | 186 | 1 | 185 | 2.05e-113 | 325 |
| MS.gene27720.t1 | MTR_4g036300 | 84.946 | 186 | 27 | 1 | 1 | 186 | 1 | 185 | 2.05e-113 | 325 |
| MS.gene27720.t1 | MTR_7g077110 | 81.183 | 186 | 34 | 1 | 1 | 186 | 1 | 185 | 4.00e-113 | 324 |
| MS.gene27720.t1 | MTR_4g036290 | 79.570 | 186 | 37 | 1 | 1 | 186 | 1 | 185 | 5.60e-110 | 317 |
| MS.gene27720.t1 | MTR_7g077050 | 79.032 | 186 | 36 | 1 | 1 | 186 | 1 | 183 | 1.34e-109 | 315 |
| MS.gene27720.t1 | MTR_7g076960 | 70.968 | 186 | 50 | 3 | 1 | 186 | 1 | 182 | 3.56e-91 | 269 |
| MS.gene27720.t1 | MTR_8g031170 | 63.068 | 176 | 65 | 0 | 11 | 186 | 14 | 189 | 2.39e-81 | 244 |
| MS.gene27720.t1 | MTR_7g077000 | 82.677 | 127 | 22 | 0 | 60 | 186 | 1 | 127 | 1.72e-76 | 229 |
| MS.gene27720.t1 | MTR_7g077040 | 67.333 | 150 | 23 | 1 | 23 | 172 | 1 | 124 | 1.95e-65 | 201 |
| MS.gene27720.t1 | MTR_8g031150 | 66.964 | 112 | 27 | 1 | 75 | 186 | 42 | 143 | 1.08e-44 | 149 |
| MS.gene27720.t1 | MTR_2g095130 | 57.364 | 129 | 53 | 2 | 59 | 186 | 90 | 217 | 2.07e-43 | 148 |
| MS.gene27720.t1 | MTR_8g031120 | 63.393 | 112 | 31 | 1 | 75 | 186 | 34 | 135 | 4.15e-42 | 142 |
| MS.gene27720.t1 | MTR_8g031160 | 55.039 | 129 | 41 | 3 | 60 | 186 | 7 | 120 | 1.69e-39 | 134 |
| MS.gene27720.t1 | MTR_2g095080 | 53.383 | 133 | 59 | 3 | 58 | 188 | 90 | 221 | 4.54e-33 | 121 |
| MS.gene27720.t1 | MTR_2g095060 | 49.045 | 157 | 71 | 5 | 38 | 188 | 65 | 218 | 1.09e-32 | 120 |
| MS.gene27720.t1 | MTR_3g088930 | 63.393 | 112 | 35 | 2 | 187 | 292 | 341 | 452 | 2.86e-25 | 105 |
| MS.gene27720.t1 | MTR_7g076950 | 52.326 | 86 | 32 | 3 | 1 | 78 | 1 | 85 | 1.53e-20 | 84.7 |
| MS.gene27720.t1 | MTR_3g061050 | 65.517 | 58 | 19 | 1 | 60 | 117 | 1 | 57 | 1.10e-18 | 80.1 |
| MS.gene27720.t1 | MTR_2g095170 | 57.143 | 63 | 27 | 0 | 58 | 120 | 86 | 148 | 5.30e-18 | 79.7 |
| MS.gene27720.t1 | MTR_7g076930 | 63.636 | 44 | 16 | 0 | 75 | 118 | 2 | 45 | 2.61e-14 | 66.6 |
| MS.gene27720.t1 | MTR_7g031470 | 33.858 | 127 | 72 | 6 | 178 | 292 | 331 | 457 | 2.98e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTTATCATTGTGGATT+TGG | 0.204924 | 7.2:+28788292 | MS.gene27720:CDS |
| CAACAAAATAAAAGAAGTTT+TGG | 0.230362 | 7.2:-28786898 | None:intergenic |
| CTTGTTATCATTGTGGATTT+GGG | 0.312381 | 7.2:+28788293 | MS.gene27720:CDS |
| TGCTGAGTCTTGAACTGATC+TGG | 0.325937 | 7.2:-28788369 | None:intergenic |
| AGACCACCCCATTGCTCTTT+AGG | 0.343729 | 7.2:-28787404 | None:intergenic |
| GAAGCATCAACAATGTTGTT+TGG | 0.350738 | 7.2:-28787353 | None:intergenic |
| CCCGTTGTTGCACTTTCAAC+CGG | 0.351339 | 7.2:+28787194 | MS.gene27720:CDS |
| TTCTCTTGATTGCATTGTCC+TGG | 0.365128 | 7.2:-28787008 | None:intergenic |
| TTGTTCATCACATCCCTTTG+TGG | 0.385964 | 7.2:-28787309 | None:intergenic |
| AAATGTGCCTAAAGAGCAAT+GGG | 0.421227 | 7.2:+28787397 | MS.gene27720:CDS |
| ATTAAGAGTGAGATATGCTT+TGG | 0.423149 | 7.2:-28787102 | None:intergenic |
| CGTCCAAGCGGTAGAATTAG+AGG | 0.425326 | 7.2:+28786972 | MS.gene27720:CDS |
| GACTCATTTCTTAGTGAAGA+AGG | 0.430679 | 7.2:-28788128 | None:intergenic |
| AATAGAGTTGTTAAGACTGA+TGG | 0.466593 | 7.2:+28788155 | MS.gene27720:CDS |
| GATTCTGATTGTTGTGTACA+AGG | 0.466772 | 7.2:+28787032 | MS.gene27720:CDS |
| TGGACGACAGTTCTGAGCTT+CGG | 0.471843 | 7.2:-28786955 | None:intergenic |
| GCTCTTGTGGTTGAACCATC+CGG | 0.471995 | 7.2:-28787213 | None:intergenic |
| CTGATGGAAACTGTGTATCT+TGG | 0.489372 | 7.2:+28788171 | MS.gene27720:CDS |
| AATATTACCATTAGTGCGAA+TGG | 0.490898 | 7.2:+28787248 | MS.gene27720:CDS |
| CCGGTTGAAAGTGCAACAAC+GGG | 0.491101 | 7.2:-28787194 | None:intergenic |
| CACTAATGGTAATATTATTG+AGG | 0.493114 | 7.2:-28787241 | None:intergenic |
| TGCAACAACGGGAGTGTCAT+CGG | 0.498769 | 7.2:-28787183 | None:intergenic |
| CAACATTGTTGATGCTTCCA+AGG | 0.505059 | 7.2:+28787358 | MS.gene27720:CDS |
| AGATCAGTTCAAGACTCAGC+AGG | 0.509683 | 7.2:+28788371 | MS.gene27720:CDS |
| TTTCCTCTAATTCTACCGCT+TGG | 0.512589 | 7.2:-28786975 | None:intergenic |
| TATTGAGGCACCTGCTCTTG+TGG | 0.519617 | 7.2:-28787226 | None:intergenic |
| TTTGAAAAGGGTGGAGATGG+AGG | 0.519780 | 7.2:+28787128 | MS.gene27720:CDS |
| GCTGAGTCTTGAACTGATCT+GGG | 0.520569 | 7.2:-28788368 | None:intergenic |
| TAAAGCTTTCCACACAGCCT+TGG | 0.523613 | 7.2:-28787375 | None:intergenic |
| CATTGTTGTTAATTACTCGA+GGG | 0.528032 | 7.2:+28788322 | MS.gene27720:CDS |
| TTGTTGCACTTTCAACCGGA+TGG | 0.535631 | 7.2:+28787198 | MS.gene27720:CDS |
| TAAATGTGCCTAAAGAGCAA+TGG | 0.541938 | 7.2:+28787396 | MS.gene27720:CDS |
| GCATTGTTGTTAATTACTCG+AGG | 0.542950 | 7.2:+28788321 | MS.gene27720:CDS |
| CACAGAGACTCGTGGGAAGA+CGG | 0.546826 | 7.2:+28788226 | MS.gene27720:CDS |
| TCTTGATTGCATTGTCCTGG+AGG | 0.551630 | 7.2:-28787005 | None:intergenic |
| GGGGTGGTCTTGACATTACA+TGG | 0.556263 | 7.2:+28787417 | MS.gene27720:CDS |
| TGTTGTTTGGACAAGGAGGT+TGG | 0.556808 | 7.2:-28787340 | None:intergenic |
| AGAGGAAAGAAAGCTCCTCC+AGG | 0.562702 | 7.2:+28786990 | MS.gene27720:CDS |
| TGGAATTCTTGTTATCATTG+TGG | 0.563006 | 7.2:+28788286 | MS.gene27720:CDS |
| TCCGGTTGAAAGTGCAACAA+CGG | 0.569355 | 7.2:-28787195 | None:intergenic |
| GATGGTTCAACCACAAGAGC+AGG | 0.569777 | 7.2:+28787216 | MS.gene27720:CDS |
| TCAACAATGTTGTTTGGACA+AGG | 0.577465 | 7.2:-28787347 | None:intergenic |
| ATTTCTTAGTGAAGAAGGCA+AGG | 0.578615 | 7.2:-28788123 | None:intergenic |
| GAAAAGGGTGGAGATGGAGG+TGG | 0.579088 | 7.2:+28787131 | MS.gene27720:CDS |
| GCAAATGCAATTCATTCATG+AGG | 0.593689 | 7.2:+28788419 | MS.gene27720:CDS |
| CATATTGCACAGAGACTCGT+GGG | 0.607913 | 7.2:+28788219 | MS.gene27720:CDS |
| GCTCAGAACTGTCGTCCAAG+CGG | 0.618644 | 7.2:+28786960 | MS.gene27720:CDS |
| TCATATTGCACAGAGACTCG+TGG | 0.621958 | 7.2:+28788218 | MS.gene27720:CDS |
| TACTGCTTGTCACATTCTGA+AGG | 0.623840 | 7.2:-28787155 | None:intergenic |
| GATGAGTGTGACTCCACAAA+GGG | 0.624564 | 7.2:+28787296 | MS.gene27720:CDS |
| TTGTTGTTAATTACTCGAGG+GGG | 0.654827 | 7.2:+28788324 | MS.gene27720:CDS |
| ATTGTTGTTAATTACTCGAG+GGG | 0.659915 | 7.2:+28788323 | MS.gene27720:CDS |
| ACAATGTTGTTTGGACAAGG+AGG | 0.667279 | 7.2:-28787344 | None:intergenic |
| GATCAGTTCAAGACTCAGCA+GGG | 0.670914 | 7.2:+28788372 | MS.gene27720:CDS |
| GTGCCTAAAGAGCAATGGGG+TGG | 0.674878 | 7.2:+28787401 | MS.gene27720:CDS |
| TTGGTGTGAGTAGACACTGA+TGG | 0.681144 | 7.2:-28787083 | None:intergenic |
| TTGATGCTTCCAAGGCTGTG+TGG | 0.692840 | 7.2:+28787366 | MS.gene27720:CDS |
| TGATGAGTGTGACTCCACAA+AGG | 0.703489 | 7.2:+28787295 | MS.gene27720:CDS |
| GTCACACTCATCAACCACCA+TGG | 0.705411 | 7.2:-28787285 | None:intergenic |
| AATGTGCCTAAAGAGCAATG+GGG | 0.842697 | 7.2:+28787398 | MS.gene27720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTAGTAGTTATAG+GGG | - | chr7.2:28787915-28787934 | None:intergenic | 15.0% |
| !! | AAGTACAAAATATCATTAAA+GGG | - | chr7.2:28787654-28787673 | None:intergenic | 15.0% |
| !! | CAAATAAATTAGTAGTTATA+GGG | - | chr7.2:28787916-28787935 | None:intergenic | 15.0% |
| !! | TAAGTACAAAATATCATTAA+AGG | - | chr7.2:28787655-28787674 | None:intergenic | 15.0% |
| !! | TCAAATAAATTAGTAGTTAT+AGG | - | chr7.2:28787917-28787936 | None:intergenic | 15.0% |
| !! | TTTCTTAATTTATAACAGAA+TGG | - | chr7.2:28787555-28787574 | None:intergenic | 15.0% |
| !!! | AACAAAATAAAAGAAGTTTT+GGG | - | chr7.2:28786900-28786919 | None:intergenic | 15.0% |
| !! | AATAAATTAGTAGTTATAGG+GGG | - | chr7.2:28787914-28787933 | None:intergenic | 20.0% |
| !! | AGTTTCTAATCAAATTTGAT+GGG | + | chr7.2:28787985-28788004 | MS.gene27720:intron | 20.0% |
| !!! | AAGCTAAACAAAATTTTAAG+TGG | + | chr7.2:28787817-28787836 | MS.gene27720:intron | 20.0% |
| !!! | AATTTGGAGTATTGATATAA+AGG | - | chr7.2:28787629-28787648 | None:intergenic | 20.0% |
| !!! | AATTTTTTATGCATTACTGA+TGG | + | chr7.2:28787785-28787804 | MS.gene27720:intron | 20.0% |
| !!! | ACAAAATAAAAGAAGTTTTG+GGG | - | chr7.2:28786899-28786918 | None:intergenic | 20.0% |
| !!! | ACTCTTAATAGTTTTGAAAA+GGG | + | chr7.2:28787116-28787135 | MS.gene27720:CDS | 20.0% |
| !!! | CAAAACTTCTTTTATTTTGT+TGG | + | chr7.2:28786899-28786918 | MS.gene27720:CDS | 20.0% |
| !!! | CAACAAAATAAAAGAAGTTT+TGG | - | chr7.2:28786901-28786920 | None:intergenic | 20.0% |
| !!! | TAAAGGCAAATATTCTATTT+TGG | - | chr7.2:28787612-28787631 | None:intergenic | 20.0% |
| ! | ATATCATTAAAGGGAGAATT+TGG | - | chr7.2:28787645-28787664 | None:intergenic | 25.0% |
| ! | CACTAATGGTAATATTATTG+AGG | - | chr7.2:28787244-28787263 | None:intergenic | 25.0% |
| ! | GAGTTTCTAATCAAATTTGA+TGG | + | chr7.2:28787984-28788003 | MS.gene27720:intron | 25.0% |
| ! | TATCACCAAAACTAAGATTA+TGG | - | chr7.2:28788079-28788098 | None:intergenic | 25.0% |
| !! | TTGGTGATATATCAAACAAT+AGG | + | chr7.2:28788090-28788109 | MS.gene27720:intron | 25.0% |
| !!! | CAAAATAAAAGAAGTTTTGG+GGG | - | chr7.2:28786898-28786917 | None:intergenic | 25.0% |
| !!! | CACTCTTAATAGTTTTGAAA+AGG | + | chr7.2:28787115-28787134 | MS.gene27720:CDS | 25.0% |
| !!! | CTAAACAAAATTTTAAGTGG+AGG | + | chr7.2:28787820-28787839 | MS.gene27720:intron | 25.0% |
| AAACCATAGAAACACAAACA+AGG | - | chr7.2:28787468-28787487 | None:intergenic | 30.0% | |
| AATAGAGTTGTTAAGACTGA+TGG | + | chr7.2:28788155-28788174 | MS.gene27720:CDS | 30.0% | |
| AATATTACCATTAGTGCGAA+TGG | + | chr7.2:28787248-28787267 | MS.gene27720:CDS | 30.0% | |
| AGTCCAGTTAAGATTGAAAT+CGG | - | chr7.2:28788032-28788051 | None:intergenic | 30.0% | |
| ATCCAAAATCACCTTAAATG+TGG | + | chr7.2:28788053-28788072 | MS.gene27720:intron | 30.0% | |
| ATTAAGAGTGAGATATGCTT+TGG | - | chr7.2:28787105-28787124 | None:intergenic | 30.0% | |
| ATTGACAAGTAGCATATTCA+TGG | + | chr7.2:28787684-28787703 | MS.gene27720:intron | 30.0% | |
| TAAGATTATGGCCACATTTA+AGG | - | chr7.2:28788067-28788086 | None:intergenic | 30.0% | |
| ! | AATCCTTGTTTGTGTTTCTA+TGG | + | chr7.2:28787462-28787481 | MS.gene27720:intron | 30.0% |
| ! | ATTGTTGTTAATTACTCGAG+GGG | + | chr7.2:28788323-28788342 | MS.gene27720:CDS | 30.0% |
| ! | CATTGTTGTTAATTACTCGA+GGG | + | chr7.2:28788322-28788341 | MS.gene27720:CDS | 30.0% |
| ! | CTTGTTATCATTGTGGATTT+GGG | + | chr7.2:28788293-28788312 | MS.gene27720:CDS | 30.0% |
| ! | TACCAAGTGCAAAATTTTGT+TGG | + | chr7.2:28788254-28788273 | MS.gene27720:CDS | 30.0% |
| ! | TCTTGTTATCATTGTGGATT+TGG | + | chr7.2:28788292-28788311 | MS.gene27720:CDS | 30.0% |
| ! | TGGAATTCTTGTTATCATTG+TGG | + | chr7.2:28788286-28788305 | MS.gene27720:CDS | 30.0% |
| !!! | CTTAATAGTTTTGAAAAGGG+TGG | + | chr7.2:28787119-28787138 | MS.gene27720:CDS | 30.0% |
| AAATGTGCCTAAAGAGCAAT+GGG | + | chr7.2:28787397-28787416 | MS.gene27720:CDS | 35.0% | |
| ATTTCTTAGTGAAGAAGGCA+AGG | - | chr7.2:28788126-28788145 | None:intergenic | 35.0% | |
| GACTCATTTCTTAGTGAAGA+AGG | - | chr7.2:28788131-28788150 | None:intergenic | 35.0% | |
| GATTCTGATTGTTGTGTACA+AGG | + | chr7.2:28787032-28787051 | MS.gene27720:CDS | 35.0% | |
| TAAATGTGCCTAAAGAGCAA+TGG | + | chr7.2:28787396-28787415 | MS.gene27720:CDS | 35.0% | |
| TCTCCGATTTCAATCTTAAC+TGG | + | chr7.2:28788026-28788045 | MS.gene27720:intron | 35.0% | |
| TGATGGGATGCTTAGTATTA+AGG | + | chr7.2:28788001-28788020 | MS.gene27720:intron | 35.0% | |
| ! | CACCAACAAAATTTTGCACT+TGG | - | chr7.2:28788259-28788278 | None:intergenic | 35.0% |
| ! | GAAGCATCAACAATGTTGTT+TGG | - | chr7.2:28787356-28787375 | None:intergenic | 35.0% |
| ! | GCATTGTTGTTAATTACTCG+AGG | + | chr7.2:28788321-28788340 | MS.gene27720:CDS | 35.0% |
| ! | TCAACAATGTTGTTTGGACA+AGG | - | chr7.2:28787350-28787369 | None:intergenic | 35.0% |
| ! | TGTGGCCATAATCTTAGTTT+TGG | + | chr7.2:28788071-28788090 | MS.gene27720:intron | 35.0% |
| ! | TTGTTGTTAATTACTCGAGG+GGG | + | chr7.2:28788324-28788343 | MS.gene27720:CDS | 35.0% |
| !! | ACTTTTTCCATTCGCACTAA+TGG | - | chr7.2:28787258-28787277 | None:intergenic | 35.0% |
| !! | TATTCATGGCCTTGTATCAT+AGG | + | chr7.2:28787698-28787717 | MS.gene27720:intron | 35.0% |
| !! | TGTCAGTTCGTTTTAATGCT+AGG | + | chr7.2:28787846-28787865 | MS.gene27720:intron | 35.0% |
| AATGTGCCTAAAGAGCAATG+GGG | + | chr7.2:28787398-28787417 | MS.gene27720:CDS | 40.0% | |
| CAACATTGTTGATGCTTCCA+AGG | + | chr7.2:28787358-28787377 | MS.gene27720:CDS | 40.0% | |
| CTGATGGAAACTGTGTATCT+TGG | + | chr7.2:28788171-28788190 | MS.gene27720:CDS | 40.0% | |
| TACTGCTTGTCACATTCTGA+AGG | - | chr7.2:28787158-28787177 | None:intergenic | 40.0% | |
| TAGTGCGAATGGAAAAAGTG+TGG | + | chr7.2:28787259-28787278 | MS.gene27720:CDS | 40.0% | |
| TCTGACCTACCTATGATACA+AGG | - | chr7.2:28787710-28787729 | None:intergenic | 40.0% | |
| TTCTCTTGATTGCATTGTCC+TGG | - | chr7.2:28787011-28787030 | None:intergenic | 40.0% | |
| TTGTTCATCACATCCCTTTG+TGG | - | chr7.2:28787312-28787331 | None:intergenic | 40.0% | |
| TTTCCTCTAATTCTACCGCT+TGG | - | chr7.2:28786978-28786997 | None:intergenic | 40.0% | |
| ! | ACAATGTTGTTTGGACAAGG+AGG | - | chr7.2:28787347-28787366 | None:intergenic | 40.0% |
| !! | CAGTTCGTTTTAATGCTAGG+TGG | + | chr7.2:28787849-28787868 | MS.gene27720:intron | 40.0% |
| !! | GGCCACATTTAAGGTGATTT+TGG | - | chr7.2:28788058-28788077 | None:intergenic | 40.0% |
| !!! | AATTTTGTTGGTGTCGTTGC+TGG | + | chr7.2:28788266-28788285 | MS.gene27720:CDS | 40.0% |
| !!! | AGTTTTGAAAAGGGTGGAGA+TGG | + | chr7.2:28787125-28787144 | MS.gene27720:CDS | 40.0% |
| AGATCAGTTCAAGACTCAGC+AGG | + | chr7.2:28788371-28788390 | MS.gene27720:CDS | 45.0% | |
| ATCATGCTTCTGCATGCTGT+TGG | + | chr7.2:28787962-28787981 | MS.gene27720:intron | 45.0% | |
| CATATTGCACAGAGACTCGT+GGG | + | chr7.2:28788219-28788238 | MS.gene27720:CDS | 45.0% | |
| GATCAGTTCAAGACTCAGCA+GGG | + | chr7.2:28788372-28788391 | MS.gene27720:CDS | 45.0% | |
| GATGAGTGTGACTCCACAAA+GGG | + | chr7.2:28787296-28787315 | MS.gene27720:CDS | 45.0% | |
| GCTGAGTCTTGAACTGATCT+GGG | - | chr7.2:28788371-28788390 | None:intergenic | 45.0% | |
| TAAAGCTTTCCACACAGCCT+TGG | - | chr7.2:28787378-28787397 | None:intergenic | 45.0% | |
| TCATATTGCACAGAGACTCG+TGG | + | chr7.2:28788218-28788237 | MS.gene27720:CDS | 45.0% | |
| TCTTGATTGCATTGTCCTGG+AGG | - | chr7.2:28787008-28787027 | None:intergenic | 45.0% | |
| TGATGAGTGTGACTCCACAA+AGG | + | chr7.2:28787295-28787314 | MS.gene27720:CDS | 45.0% | |
| TGCTGAGTCTTGAACTGATC+TGG | - | chr7.2:28788372-28788391 | None:intergenic | 45.0% | |
| TTGGTGTGAGTAGACACTGA+TGG | - | chr7.2:28787086-28787105 | None:intergenic | 45.0% | |
| TTGTTGCACTTTCAACCGGA+TGG | + | chr7.2:28787198-28787217 | MS.gene27720:CDS | 45.0% | |
| TTTGAAAAGGGTGGAGATGG+AGG | + | chr7.2:28787128-28787147 | MS.gene27720:CDS | 45.0% | |
| ! | AACAGCATGCAGAAGCATGA+TGG | - | chr7.2:28787963-28787982 | None:intergenic | 45.0% |
| ! | TCCGGTTGAAAGTGCAACAA+CGG | - | chr7.2:28787198-28787217 | None:intergenic | 45.0% |
| ! | TGCGAATGGAAAAAGTGTGG+TGG | + | chr7.2:28787262-28787281 | MS.gene27720:CDS | 45.0% |
| ! | TGTTGTTTGGACAAGGAGGT+TGG | - | chr7.2:28787343-28787362 | None:intergenic | 45.0% |
| !! | CATGGCCTTGTATCATAGGT+AGG | + | chr7.2:28787702-28787721 | MS.gene27720:intron | 45.0% |
| !!! | AAAATTTAAACATTATATTT+TGG | - | chr7.2:28787771-28787790 | None:intergenic | 5.0% |
| AGACCACCCCATTGCTCTTT+AGG | - | chr7.2:28787407-28787426 | None:intergenic | 50.0% | |
| AGAGGAAAGAAAGCTCCTCC+AGG | + | chr7.2:28786990-28787009 | MS.gene27720:CDS | 50.0% | |
| CCCGTTGTTGCACTTTCAAC+CGG | + | chr7.2:28787194-28787213 | MS.gene27720:CDS | 50.0% | |
| CGTCCAAGCGGTAGAATTAG+AGG | + | chr7.2:28786972-28786991 | MS.gene27720:CDS | 50.0% | |
| GATGGTTCAACCACAAGAGC+AGG | + | chr7.2:28787216-28787235 | MS.gene27720:CDS | 50.0% | |
| GCTCTTGTGGTTGAACCATC+CGG | - | chr7.2:28787216-28787235 | None:intergenic | 50.0% | |
| GTCACACTCATCAACCACCA+TGG | - | chr7.2:28787288-28787307 | None:intergenic | 50.0% | |
| TTGATGCTTCCAAGGCTGTG+TGG | + | chr7.2:28787366-28787385 | MS.gene27720:CDS | 50.0% | |
| ! | AAAAAGTGTGGTGGCCATGG+TGG | + | chr7.2:28787271-28787290 | MS.gene27720:CDS | 50.0% |
| ! | CCGGTTGAAAGTGCAACAAC+GGG | - | chr7.2:28787197-28787216 | None:intergenic | 50.0% |
| ! | GGGGTGGTCTTGACATTACA+TGG | + | chr7.2:28787417-28787436 | MS.gene27720:CDS | 50.0% |
| ! | TATTGAGGCACCTGCTCTTG+TGG | - | chr7.2:28787229-28787248 | None:intergenic | 50.0% |
| ! | TGGAAAAAGTGTGGTGGCCA+TGG | + | chr7.2:28787268-28787287 | MS.gene27720:CDS | 50.0% |
| !! | TGCAACAACGGGAGTGTCAT+CGG | - | chr7.2:28787186-28787205 | None:intergenic | 50.0% |
| !! | TGGACGACAGTTCTGAGCTT+CGG | - | chr7.2:28786958-28786977 | None:intergenic | 50.0% |
| CACAGAGACTCGTGGGAAGA+CGG | + | chr7.2:28788226-28788245 | MS.gene27720:CDS | 55.0% | |
| GAAAAGGGTGGAGATGGAGG+TGG | + | chr7.2:28787131-28787150 | MS.gene27720:CDS | 55.0% | |
| GCTCAGAACTGTCGTCCAAG+CGG | + | chr7.2:28786960-28786979 | MS.gene27720:CDS | 55.0% | |
| GTGCCTAAAGAGCAATGGGG+TGG | + | chr7.2:28787401-28787420 | MS.gene27720:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 28786882 | 28788439 | 28786882 | ID=MS.gene27720 |
| chr7.2 | mRNA | 28786882 | 28788439 | 28786882 | ID=MS.gene27720.t1;Parent=MS.gene27720 |
| chr7.2 | exon | 28786882 | 28787438 | 28786882 | ID=MS.gene27720.t1.exon1;Parent=MS.gene27720.t1 |
| chr7.2 | CDS | 28786882 | 28787438 | 28786882 | ID=cds.MS.gene27720.t1;Parent=MS.gene27720.t1 |
| chr7.2 | exon | 28788112 | 28788439 | 28788112 | ID=MS.gene27720.t1.exon2;Parent=MS.gene27720.t1 |
| chr7.2 | CDS | 28788112 | 28788439 | 28788112 | ID=cds.MS.gene27720.t1;Parent=MS.gene27720.t1 |
| Gene Sequence |
| Protein sequence |
