Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28139.t1 | RHN42994.1 | 98.3 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 2.30E-155 | 558.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28139.t1 | Q8GY88 | 67.8 | 214 | 67 | 2 | 71 | 282 | 80 | 293 | 4.6e-80 | 299.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28139.t1 | A0A396GU32 | 98.3 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 1.7e-155 | 558.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene28139 | 0.815022 | 1.14E-51 | -1.69E-46 |
| MS.gene049272 | MS.gene28139 | 0.806203 | 9.22E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene28139 | 0.826328 | 2.88E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene28139 | 0.803498 | 3.39E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene28139 | 0.813985 | 1.94E-51 | -1.69E-46 |
| MS.gene050721 | MS.gene28139 | 0.810059 | 1.39E-50 | -1.69E-46 |
| MS.gene051210 | MS.gene28139 | 0.803141 | 4.02E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene28139 | 0.805574 | 1.25E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene28139 | 0.821232 | 4.50E-53 | -1.69E-46 |
| MS.gene054291 | MS.gene28139 | -0.802788 | 4.75E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene28139 | 0.834516 | 2.86E-56 | -1.69E-46 |
| MS.gene054576 | MS.gene28139 | 0.812388 | 4.35E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene28139 | 0.804173 | 2.45E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene28139 | 0.815228 | 1.03E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene28139 | 0.816815 | 4.55E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene28139 | 0.805065 | 1.60E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene28139 | 0.80386 | 2.85E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene28139 | 0.800583 | 1.35E-48 | -1.69E-46 |
| MS.gene06052 | MS.gene28139 | 0.8177 | 2.88E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene28139 | 0.802243 | 6.15E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28139.t1 | MTR_6g033510 | 29.915 | 234 | 159 | 2 | 40 | 273 | 49 | 277 | 3.72e-34 | 125 |
| MS.gene28139.t1 | MTR_6g033510 | 33.000 | 200 | 133 | 1 | 74 | 273 | 22 | 220 | 5.63e-34 | 124 |
| MS.gene28139.t1 | MTR_6g033510 | 33.000 | 200 | 133 | 1 | 74 | 273 | 77 | 275 | 2.17e-33 | 124 |
| MS.gene28139.t1 | MTR_6g033510 | 29.487 | 234 | 159 | 2 | 40 | 273 | 49 | 276 | 1.33e-32 | 122 |
| MS.gene28139.t1 | MTR_6g033510 | 30.144 | 209 | 141 | 2 | 40 | 248 | 49 | 252 | 2.87e-28 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28139.t1 | AT2G21940 | 60.769 | 260 | 98 | 3 | 22 | 281 | 40 | 295 | 1.32e-111 | 325 |
| MS.gene28139.t1 | AT2G21940 | 60.769 | 260 | 97 | 3 | 22 | 281 | 40 | 294 | 6.01e-111 | 323 |
| MS.gene28139.t1 | AT2G21940 | 60.769 | 260 | 97 | 3 | 22 | 281 | 40 | 294 | 6.01e-111 | 323 |
| MS.gene28139.t1 | AT2G21940 | 60.769 | 260 | 97 | 3 | 22 | 281 | 40 | 294 | 6.01e-111 | 323 |
| MS.gene28139.t1 | AT4G39540 | 56.089 | 271 | 115 | 3 | 16 | 282 | 23 | 293 | 5.64e-106 | 310 |
| MS.gene28139.t1 | AT4G39540 | 56.089 | 271 | 115 | 3 | 16 | 282 | 23 | 293 | 5.64e-106 | 310 |
| MS.gene28139.t1 | AT4G39540 | 54.122 | 279 | 116 | 4 | 16 | 282 | 23 | 301 | 2.26e-102 | 301 |
| MS.gene28139.t1 | AT2G21940 | 59.910 | 222 | 84 | 3 | 22 | 243 | 40 | 256 | 2.95e-92 | 275 |
| MS.gene28139.t1 | AT2G21940 | 59.910 | 222 | 84 | 3 | 22 | 243 | 40 | 256 | 2.95e-92 | 275 |
| MS.gene28139.t1 | AT2G21940 | 59.910 | 222 | 84 | 3 | 22 | 243 | 40 | 256 | 2.95e-92 | 275 |
| MS.gene28139.t1 | AT3G26900 | 36.000 | 200 | 116 | 2 | 75 | 273 | 75 | 263 | 6.63e-31 | 117 |
| MS.gene28139.t1 | AT3G26900 | 36.000 | 200 | 116 | 2 | 75 | 273 | 75 | 263 | 6.63e-31 | 117 |
| MS.gene28139.t1 | AT3G26900 | 36.000 | 200 | 116 | 2 | 75 | 273 | 75 | 263 | 6.63e-31 | 117 |
Find 68 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCACGGCTGCAATTCTTT+TGG | 0.328611 | 4.4:-9835788 | None:intergenic |
| CTGTTGTACGGCCTATTAAT+TGG | 0.350188 | 4.4:+9835603 | MS.gene28139:CDS |
| TGCAGATATAGCAACAAAAC+TGG | 0.355991 | 4.4:+9836609 | MS.gene28139:intron |
| GCTGATATATTCAAGCTCTA+TGG | 0.360240 | 4.4:+9833729 | MS.gene28139:CDS |
| TGTTCTTATAACAATATTCC+AGG | 0.365109 | 4.4:+9831544 | MS.gene28139:CDS |
| TTGATTGAGGAAGAGGTTGA+TGG | 0.403718 | 4.4:+9833696 | MS.gene28139:CDS |
| GTAGCTTCAACATTGGAATC+TGG | 0.413868 | 4.4:+9832608 | MS.gene28139:intron |
| AAATGACAAGTTTATGCATC+AGG | 0.414811 | 4.4:-9835565 | None:intergenic |
| TTGCAGGCGCTAGAGCAAAT+TGG | 0.422109 | 4.4:+9836815 | MS.gene28139:intron |
| CATAAACTTGTCATTTCTAC+AGG | 0.428732 | 4.4:+9835572 | MS.gene28139:CDS |
| AAATTGACATGCAGGAATGA+TGG | 0.432438 | 4.4:+9832982 | MS.gene28139:intron |
| GAGAATTGTGTGAGAATAAC+CGG | 0.432966 | 4.4:+9831445 | MS.gene28139:CDS |
| GGTTATTCTCACACAATTCT+CGG | 0.435105 | 4.4:-9831443 | None:intergenic |
| TGATACATTGATTGAGGAAG+AGG | 0.440199 | 4.4:+9833689 | MS.gene28139:CDS |
| ACCTCAATTGCAATTTCAGT+TGG | 0.443438 | 4.4:-9836658 | None:intergenic |
| TACTCTTGTAGCTTCAACAT+TGG | 0.455200 | 4.4:+9832601 | MS.gene28139:intron |
| GGCTCTGGGAAGACAACTGT+GGG | 0.455572 | 4.4:+9833004 | MS.gene28139:CDS |
| TTCTCGGGTCGGGTAAGAAC+CGG | 0.470591 | 4.4:-9831427 | None:intergenic |
| TGTTCAAATGTTGCATCTAC+CGG | 0.470846 | 4.4:+9831408 | MS.gene28139:CDS |
| CATGCAGGAATGATGGGCTC+TGG | 0.472739 | 4.4:+9832989 | MS.gene28139:intron |
| TCCAACTGAAATTGCAATTG+AGG | 0.477103 | 4.4:+9836657 | MS.gene28139:CDS |
| CAGATTCTGCCGTATTTAAG+TGG | 0.478853 | 4.4:+9832860 | MS.gene28139:CDS |
| TCTCACACAATTCTCGGGTC+GGG | 0.489860 | 4.4:-9831437 | None:intergenic |
| GTTTCCCCTTGAGGAAGAGT+TGG | 0.510532 | 4.4:+9832640 | MS.gene28139:CDS |
| TTCTAATGAGACTCTAGCAT+TGG | 0.514662 | 4.4:-9836236 | None:intergenic |
| TTATAGTGATACATTGATTG+AGG | 0.517101 | 4.4:+9833683 | MS.gene28139:intron |
| TTCTCACACAATTCTCGGGT+CGG | 0.518453 | 4.4:-9831438 | None:intergenic |
| AATTGACATGCAGGAATGAT+GGG | 0.520917 | 4.4:+9832983 | MS.gene28139:intron |
| GGTCCGACTCAAAGAACAAC+CGG | 0.536701 | 4.4:-9831464 | None:intergenic |
| AGATGTACCAGTGGAAGCAT+TGG | 0.540460 | 4.4:+9835765 | MS.gene28139:CDS |
| CTTGTCATTTCTACAGGTGG+AGG | 0.541169 | 4.4:+9835578 | MS.gene28139:CDS |
| GTTATTCTCACACAATTCTC+GGG | 0.542551 | 4.4:-9831442 | None:intergenic |
| AGAATCTTTCTTTCGCGAGA+AGG | 0.544258 | 4.4:+9833752 | MS.gene28139:CDS |
| TAACCGGTTGTTCTTTGAGT+CGG | 0.545142 | 4.4:+9831461 | MS.gene28139:CDS |
| TGAGGAAGAGTTGGTTCTGA+AGG | 0.546791 | 4.4:+9832649 | MS.gene28139:CDS |
| GGGCGCTGTATATATGTTGT+TGG | 0.552480 | 4.4:+9832881 | MS.gene28139:CDS |
| CCTCTTCTACACGATGAAGC+AGG | 0.557589 | 4.4:+9835823 | MS.gene28139:CDS |
| GGTTGTTCTTTGAGTCGGAC+CGG | 0.558486 | 4.4:+9831466 | MS.gene28139:CDS |
| TCGGTGCAAGAAGGTTTCTA+CGG | 0.564921 | 4.4:+9831513 | MS.gene28139:CDS |
| ATCTTTCTTTCGCGAGAAGG+AGG | 0.565809 | 4.4:+9833755 | MS.gene28139:CDS |
| ATACAGCGCCCACTTAAATA+CGG | 0.566584 | 4.4:-9832869 | None:intergenic |
| CAGGTGGAGGTGCTGTTGTA+CGG | 0.570266 | 4.4:+9835591 | MS.gene28139:CDS |
| GGCCAAAAGAATTGCAGCCG+TGG | 0.570496 | 4.4:+9835786 | MS.gene28139:CDS |
| AAACTTGTCATTTCTACAGG+TGG | 0.573379 | 4.4:+9835575 | MS.gene28139:CDS |
| CTGCTTCATCGTGTAGAAGA+GGG | 0.582100 | 4.4:-9835822 | None:intergenic |
| TCAGAACCAACTCTTCCTCA+AGG | 0.583804 | 4.4:-9832646 | None:intergenic |
| CAGAACCAACTCTTCCTCAA+GGG | 0.586131 | 4.4:-9832645 | None:intergenic |
| ATGCAGGAATGATGGGCTCT+GGG | 0.586330 | 4.4:+9832990 | MS.gene28139:intron |
| CCTGCTTCATCGTGTAGAAG+AGG | 0.594223 | 4.4:-9835823 | None:intergenic |
| GCAGATATAGCAACAAAACT+GGG | 0.598728 | 4.4:+9836610 | MS.gene28139:intron |
| AGATTCTGCCGTATTTAAGT+GGG | 0.599085 | 4.4:+9832861 | MS.gene28139:CDS |
| CCAGGAAATATATGCACAAG+GGG | 0.600293 | 4.4:+9835728 | MS.gene28139:intron |
| GCCAAAAGAATTGCAGCCGT+GGG | 0.601812 | 4.4:+9835787 | MS.gene28139:CDS |
| AATGACAAGTTTATGCATCA+GGG | 0.602843 | 4.4:-9835564 | None:intergenic |
| AGGGCATAAGTTTCCCCTTG+AGG | 0.610167 | 4.4:+9832631 | MS.gene28139:CDS |
| TGAGACTCTAGCATTGGCGT+TGG | 0.610419 | 4.4:-9836230 | None:intergenic |
| GCTTCAACATTGGAATCTGG+AGG | 0.615047 | 4.4:+9832611 | MS.gene28139:intron |
| GGGCTCTGGGAAGACAACTG+TGG | 0.617107 | 4.4:+9833003 | MS.gene28139:CDS |
| AGGGCGAGAATTAGTTCCCA+CGG | 0.618683 | 4.4:-9835803 | None:intergenic |
| AGAACCAACTCTTCCTCAAG+GGG | 0.619441 | 4.4:-9832644 | None:intergenic |
| TCAGACGATTCGGTGCAAGA+AGG | 0.619552 | 4.4:+9831504 | MS.gene28139:CDS |
| TGCCAGGAAATATATGCACA+AGG | 0.620476 | 4.4:+9835726 | MS.gene28139:intron |
| GCCAGGAAATATATGCACAA+GGG | 0.635533 | 4.4:+9835727 | MS.gene28139:intron |
| TGTTTGGTTAGATGTACCAG+TGG | 0.652145 | 4.4:+9835756 | MS.gene28139:CDS |
| CTTCAACATTGGAATCTGGA+GGG | 0.659832 | 4.4:+9832612 | MS.gene28139:CDS |
| CAGGAAATATATGCACAAGG+GGG | 0.768658 | 4.4:+9835729 | MS.gene28139:intron |
| AGCAGGAGATGCATACACTG+CGG | 0.783701 | 4.4:+9835840 | MS.gene28139:CDS |
| GCTCTGGGAAGACAACTGTG+GGG | 0.798287 | 4.4:+9833005 | MS.gene28139:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATGGATAATTAATATA+AGG | - | chr4.4:9836092-9836111 | None:intergenic | 10.0% |
| !! | ATTATGGATAATTAATATAA+GGG | - | chr4.4:9836091-9836110 | None:intergenic | 10.0% |
| !!! | AAGAAAATATTTTGTTTATT+TGG | - | chr4.4:9834224-9834243 | None:intergenic | 10.0% |
| !!! | ATATTAATTATCCATAATTT+TGG | + | chr4.4:9836093-9836112 | MS.gene28139:intron | 10.0% |
| !!! | ATTTTATATTTTTTGATTCA+TGG | + | chr4.4:9833613-9833632 | MS.gene28139:intron | 10.0% |
| !!! | TAATTTTTATACCAATTAAT+AGG | - | chr4.4:9835617-9835636 | None:intergenic | 10.0% |
| !!! | TTATTTTTAATCTCTATAAT+TGG | + | chr4.4:9835010-9835029 | MS.gene28139:intron | 10.0% |
| !! | ATGGTATATATATACTTAAA+AGG | - | chr4.4:9832800-9832819 | None:intergenic | 15.0% |
| !! | ATTCAAGTGATATTAAATTA+AGG | + | chr4.4:9833415-9833434 | MS.gene28139:intron | 15.0% |
| !! | CAATTATATCAAATTAATAC+CGG | - | chr4.4:9833966-9833985 | None:intergenic | 15.0% |
| !! | TACATTTAATATTTGATATG+AGG | + | chr4.4:9833376-9833395 | MS.gene28139:intron | 15.0% |
| !! | TAGTACAAAATTTATCAAAT+AGG | + | chr4.4:9834887-9834906 | MS.gene28139:intron | 15.0% |
| !! | TATTATGCAATAGATAAAAA+CGG | + | chr4.4:9833450-9833469 | MS.gene28139:intron | 15.0% |
| !! | TGGTATATATATACTTAAAA+GGG | - | chr4.4:9832799-9832818 | None:intergenic | 15.0% |
| !!! | AAAGGTTTTAAGAAATAATT+AGG | + | chr4.4:9834769-9834788 | MS.gene28139:intron | 15.0% |
| !!! | AAGTAAGTTTTTATGAAATT+CGG | - | chr4.4:9836024-9836043 | None:intergenic | 15.0% |
| !!! | ATTATGTAGCATTTTTTTTT+TGG | + | chr4.4:9833289-9833308 | MS.gene28139:intron | 15.0% |
| !!! | TCATAAAAACTTACTTTTAA+AGG | + | chr4.4:9836028-9836047 | MS.gene28139:intron | 15.0% |
| !! | AAATAACATTCAACAGAATT+TGG | - | chr4.4:9831809-9831828 | None:intergenic | 20.0% |
| !! | AATATCAGAAACAAAATGTA+AGG | - | chr4.4:9832582-9832601 | None:intergenic | 20.0% |
| !! | ATATATAGAAGCAGAAAATA+AGG | - | chr4.4:9833889-9833908 | None:intergenic | 20.0% |
| !! | ATCTTTACATGTATTTGTAT+GGG | + | chr4.4:9835696-9835715 | MS.gene28139:intron | 20.0% |
| !! | ATGTTTATTTCAAACAAAGT+TGG | - | chr4.4:9834708-9834727 | None:intergenic | 20.0% |
| !! | ATTATGCAATAGATAAAAAC+GGG | + | chr4.4:9833451-9833470 | MS.gene28139:intron | 20.0% |
| !! | ATTGATTGATTGTACATATA+TGG | + | chr4.4:9834423-9834442 | MS.gene28139:intron | 20.0% |
| !! | GACAAAGCATATTATATTAA+GGG | + | chr4.4:9835897-9835916 | MS.gene28139:intron | 20.0% |
| !! | TAAGATATTGTGAATTGTTT+CGG | + | chr4.4:9835464-9835483 | MS.gene28139:intron | 20.0% |
| !! | TAATAGTCAAACAGAATAAT+AGG | - | chr4.4:9835438-9835457 | None:intergenic | 20.0% |
| !! | TATATAGAAGCAGAAAATAA+GGG | - | chr4.4:9833888-9833907 | None:intergenic | 20.0% |
| !! | TGACAAAGCATATTATATTA+AGG | + | chr4.4:9835896-9835915 | MS.gene28139:intron | 20.0% |
| !! | TGTTTATTTCAAACAAAGTT+GGG | - | chr4.4:9834707-9834726 | None:intergenic | 20.0% |
| !!! | AATATTTTTTTACGCAAGTT+TGG | - | chr4.4:9836122-9836141 | None:intergenic | 20.0% |
| !!! | TAAATTGATTTAGTTTGTAG+AGG | + | chr4.4:9834366-9834385 | MS.gene28139:intron | 20.0% |
| !!! | TATTTTGATTGTTATCATCT+AGG | - | chr4.4:9836561-9836580 | None:intergenic | 20.0% |
| !!! | TTTTAATCTCTATAATCGTT+TGG | - | chr4.4:9835188-9835207 | None:intergenic | 20.0% |
| !!! | TTTTTACTAAAGTGGTTTTA+AGG | + | chr4.4:9835070-9835089 | MS.gene28139:intron | 20.0% |
| ! | AAAATGTAAGGATCCAAAAT+GGG | - | chr4.4:9832570-9832589 | None:intergenic | 25.0% |
| ! | AAGAATTATTAGATTCGCAT+CGG | - | chr4.4:9836788-9836807 | None:intergenic | 25.0% |
| ! | ACAAATTGAAATGGAGTTAA+AGG | - | chr4.4:9836706-9836725 | None:intergenic | 25.0% |
| ! | ACTAGACTTTCAAAAACAAA+AGG | - | chr4.4:9831658-9831677 | None:intergenic | 25.0% |
| ! | AGTTATCTTAAAGAGCTTAT+TGG | - | chr4.4:9832114-9832133 | None:intergenic | 25.0% |
| ! | ATAACGTGATTAATATGCAA+AGG | + | chr4.4:9831837-9831856 | MS.gene28139:intron | 25.0% |
| ! | ATAGTTTACATTTATAGTCG+AGG | + | chr4.4:9834623-9834642 | MS.gene28139:intron | 25.0% |
| ! | ATCAAATGTACCATTTGAAT+AGG | + | chr4.4:9833162-9833181 | MS.gene28139:intron | 25.0% |
| ! | CAATACAAGTATGATTACTT+TGG | + | chr4.4:9832943-9832962 | MS.gene28139:intron | 25.0% |
| ! | CATCTTTACATGTATTTGTA+TGG | + | chr4.4:9835695-9835714 | MS.gene28139:intron | 25.0% |
| ! | CTAGACTTTCAAAAACAAAA+GGG | - | chr4.4:9831657-9831676 | None:intergenic | 25.0% |
| ! | GTGATAGAAAATATATTCTC+AGG | - | chr4.4:9832348-9832367 | None:intergenic | 25.0% |
| ! | GTTTATTTCAAACAAAGTTG+GGG | - | chr4.4:9834706-9834725 | None:intergenic | 25.0% |
| ! | TAACGTGATTAATATGCAAA+GGG | + | chr4.4:9831838-9831857 | MS.gene28139:intron | 25.0% |
| ! | TGGGATGTAATTAAAGAAAT+AGG | - | chr4.4:9833862-9833881 | None:intergenic | 25.0% |
| ! | TGTACAATCAATCAATATAG+AGG | - | chr4.4:9834419-9834438 | None:intergenic | 25.0% |
| ! | TGTTCTTATAACAATATTCC+AGG | + | chr4.4:9831544-9831563 | MS.gene28139:CDS | 25.0% |
| ! | TTAAAGAGCTTATTGGATTA+AGG | - | chr4.4:9832107-9832126 | None:intergenic | 25.0% |
| ! | TTATGCAATAGATAAAAACG+GGG | + | chr4.4:9833452-9833471 | MS.gene28139:intron | 25.0% |
| ! | TTCTTTATTGCCTATTCAAA+TGG | - | chr4.4:9833175-9833194 | None:intergenic | 25.0% |
| ! | TTGCATATTAATCACGTTAT+AGG | - | chr4.4:9831837-9831856 | None:intergenic | 25.0% |
| ! | TTGTTAAATAACAGCTATAG+CGG | + | chr4.4:9834830-9834849 | MS.gene28139:intron | 25.0% |
| ! | TTTATTTCAAACAAAGTTGG+GGG | - | chr4.4:9834705-9834724 | None:intergenic | 25.0% |
| !! | AAAACAGTTACTTTGATTCA+TGG | + | chr4.4:9833570-9833589 | MS.gene28139:intron | 25.0% |
| !! | ATGTCTTTTTATCTTTTAGC+AGG | - | chr4.4:9834991-9835010 | None:intergenic | 25.0% |
| !! | GATCTATTCTGCAATTTTAT+TGG | - | chr4.4:9832836-9832855 | None:intergenic | 25.0% |
| !! | GATGACAATTTTTACTAAAG+TGG | + | chr4.4:9835062-9835081 | MS.gene28139:intron | 25.0% |
| !! | GTTTTGCTTAAAAAAATGGA+AGG | - | chr4.4:9832740-9832759 | None:intergenic | 25.0% |
| !! | TGTCTTTTTATCTTTTAGCA+GGG | - | chr4.4:9834990-9835009 | None:intergenic | 25.0% |
| !! | TTAGCTATTCATTTTGTGAT+TGG | + | chr4.4:9833047-9833066 | MS.gene28139:CDS | 25.0% |
| !! | TTATAGTGATACATTGATTG+AGG | + | chr4.4:9833683-9833702 | MS.gene28139:intron | 25.0% |
| !! | TTGTAACAAGCTTTTATTGT+AGG | - | chr4.4:9835328-9835347 | None:intergenic | 25.0% |
| !!! | AAGCTCTTTAAGATAACTTT+TGG | + | chr4.4:9832116-9832135 | MS.gene28139:intron | 25.0% |
| !!! | ACAAGATCACTCTTTTTTAT+TGG | - | chr4.4:9836482-9836501 | None:intergenic | 25.0% |
| !!! | ACTGATTTGAACCATATTAA+TGG | - | chr4.4:9835103-9835122 | None:intergenic | 25.0% |
| !!! | CATTTCAATTTGTTAGCTTT+GGG | + | chr4.4:9836713-9836732 | MS.gene28139:intron | 25.0% |
| !!! | GATGGTTTTGCTTAAAAAAA+TGG | - | chr4.4:9832744-9832763 | None:intergenic | 25.0% |
| !!! | TACAATAAAAGCTTGTTACA+AGG | + | chr4.4:9835327-9835346 | MS.gene28139:intron | 25.0% |
| !!! | TATTGGTTCAAGTAAGAAAA+TGG | - | chr4.4:9832819-9832838 | None:intergenic | 25.0% |
| !!! | TCTTAAAACCTTTTTAAGAG+AGG | - | chr4.4:9834762-9834781 | None:intergenic | 25.0% |
| !!! | TTTTGTCATTATTTAAAGCG+AGG | + | chr4.4:9831680-9831699 | MS.gene28139:intron | 25.0% |
| AAATGACAAGTTTATGCATC+AGG | - | chr4.4:9835568-9835587 | None:intergenic | 30.0% | |
| AACAAAAGATCCGTAAATGT+GGG | - | chr4.4:9834303-9834322 | None:intergenic | 30.0% | |
| AACATTCAACAGAATTTGGA+AGG | - | chr4.4:9831805-9831824 | None:intergenic | 30.0% | |
| AATCAGCAAGACCTATAATA+TGG | - | chr4.4:9833639-9833658 | None:intergenic | 30.0% | |
| AATCAGCAAGACTTGTAATA+TGG | - | chr4.4:9833596-9833615 | None:intergenic | 30.0% | |
| AATGACAAGTTTATGCATCA+GGG | - | chr4.4:9835567-9835586 | None:intergenic | 30.0% | |
| AATTTCTTGTCTTTGTTCAC+AGG | + | chr4.4:9833082-9833101 | MS.gene28139:intron | 30.0% | |
| ACTTGAATATGAACACTAGT+TGG | - | chr4.4:9833403-9833422 | None:intergenic | 30.0% | |
| AGAAATAATTAGGTGCTTAC+TGG | + | chr4.4:9834779-9834798 | MS.gene28139:intron | 30.0% | |
| ATAATTCTTCTGTATCTTGC+AGG | + | chr4.4:9836799-9836818 | MS.gene28139:intron | 30.0% | |
| ATACTTTCAAATTGACATGC+AGG | + | chr4.4:9832974-9832993 | MS.gene28139:intron | 30.0% | |
| ATATATTATAAGCTGCTCCA+AGG | + | chr4.4:9833903-9833922 | MS.gene28139:intron | 30.0% | |
| ATTTCTTGTCTTTGTTCACA+GGG | + | chr4.4:9833083-9833102 | MS.gene28139:intron | 30.0% | |
| CAAAATGTAAGGATCCAAAA+TGG | - | chr4.4:9832571-9832590 | None:intergenic | 30.0% | |
| CAAACAGAATAATAGGAGTT+AGG | - | chr4.4:9835431-9835450 | None:intergenic | 30.0% | |
| CAGATTCTGTAAGAAAAAAC+AGG | + | chr4.4:9836311-9836330 | MS.gene28139:intron | 30.0% | |
| CAGTTAATATGCTTCAATTC+AGG | - | chr4.4:9835249-9835268 | None:intergenic | 30.0% | |
| CCAAAGCTAACAAATTGAAA+TGG | - | chr4.4:9836715-9836734 | None:intergenic | 30.0% | |
| CGACAATGTAAATACATACA+AGG | - | chr4.4:9836343-9836362 | None:intergenic | 30.0% | |
| CTCTCATATTGTTAAAGTAG+AGG | - | chr4.4:9834494-9834513 | None:intergenic | 30.0% | |
| CTGATATTACTATCTGTTGA+TGG | - | chr4.4:9832762-9832781 | None:intergenic | 30.0% | |
| CTGTGAACAGTGTAATTAAT+TGG | - | chr4.4:9831606-9831625 | None:intergenic | 30.0% | |
| GAATATTTCTTCAACCAGTT+AGG | + | chr4.4:9834332-9834351 | MS.gene28139:intron | 30.0% | |
| GATTGATTGTACATATATGG+TGG | + | chr4.4:9834426-9834445 | MS.gene28139:intron | 30.0% | |
| TAAGCAAATTTGTAGATGCT+AGG | + | chr4.4:9831722-9831741 | MS.gene28139:intron | 30.0% | |
| TACATGTATTTGTATGGGAA+TGG | + | chr4.4:9835701-9835720 | MS.gene28139:intron | 30.0% | |
| TATGCAATAGATAAAAACGG+GGG | + | chr4.4:9833453-9833472 | MS.gene28139:intron | 30.0% | |
| TGACATCAACACTAATTAGA+AGG | - | chr4.4:9832031-9832050 | None:intergenic | 30.0% | |
| TGTATGTATTTACATTGTCG+TGG | + | chr4.4:9836343-9836362 | MS.gene28139:intron | 30.0% | |
| TGTTTAATTATAGCAGAACC+TGG | - | chr4.4:9831565-9831584 | None:intergenic | 30.0% | |
| TTATTTAATACGCTCGTACT+TGG | + | chr4.4:9832513-9832532 | MS.gene28139:intron | 30.0% | |
| TTCTACATACCAATTCATGA+TGG | + | chr4.4:9834139-9834158 | MS.gene28139:intron | 30.0% | |
| TTGAATATAATCGCATGTGT+CGG | - | chr4.4:9831990-9832009 | None:intergenic | 30.0% | |
| TTGATTCATGGCCATATTAT+AGG | + | chr4.4:9833625-9833644 | MS.gene28139:intron | 30.0% | |
| ! | AAAATAAGTGCTTCCCATTT+TGG | + | chr4.4:9832554-9832573 | MS.gene28139:intron | 30.0% |
| ! | AAGTTTGGTGACCAAAATTA+TGG | - | chr4.4:9836107-9836126 | None:intergenic | 30.0% |
| ! | ACACTTTTCCTTGAAATATG+CGG | - | chr4.4:9832478-9832497 | None:intergenic | 30.0% |
| ! | ACTAATTGATTCAGAACACT+AGG | - | chr4.4:9836396-9836415 | None:intergenic | 30.0% |
| ! | CAAAGTAACTGTTTTGCAAT+AGG | - | chr4.4:9833565-9833584 | None:intergenic | 30.0% |
| ! | CATAAACTTGTCATTTCTAC+AGG | + | chr4.4:9835572-9835591 | MS.gene28139:CDS | 30.0% |
| ! | CATTTGCTTTCTTGTTATGT+TGG | + | chr4.4:9834654-9834673 | MS.gene28139:intron | 30.0% |
| ! | GCAAATTGGCAACTTTTTAA+AGG | + | chr4.4:9836829-9836848 | MS.gene28139:CDS | 30.0% |
| ! | GCTACACAATTTACATGTTT+TGG | - | chr4.4:9833121-9833140 | None:intergenic | 30.0% |
| ! | GGTAAAAGCTAGCTTAATAT+TGG | - | chr4.4:9832393-9832412 | None:intergenic | 30.0% |
| ! | TTATCAAATAGGTGCTATAG+TGG | + | chr4.4:9834898-9834917 | MS.gene28139:intron | 30.0% |
| !! | AACTTTTTAAAGGCAGAAGA+TGG | + | chr4.4:9836839-9836858 | MS.gene28139:CDS | 30.0% |
| !! | ACTCTATGATTTTGATCTCA+TGG | - | chr4.4:9831753-9831772 | None:intergenic | 30.0% |
| !! | CCATTTCAATTTGTTAGCTT+TGG | + | chr4.4:9836712-9836731 | MS.gene28139:intron | 30.0% |
| !! | TAAAACCTTTTTAAGAGAGG+AGG | - | chr4.4:9834759-9834778 | None:intergenic | 30.0% |
| !!! | AAAATGGGAAGCACTTATTT+TGG | - | chr4.4:9832555-9832574 | None:intergenic | 30.0% |
| !!! | AAAGCGAGGTTTTGTTTTTT+TGG | + | chr4.4:9831694-9831713 | MS.gene28139:intron | 30.0% |
| !!! | ATTAAGCTAGCTTTTACCAT+TGG | + | chr4.4:9832395-9832414 | MS.gene28139:intron | 30.0% |
| !!! | CTGTTTTTTCTTACAGAATC+TGG | - | chr4.4:9836313-9836332 | None:intergenic | 30.0% |
| !!! | TCACTCTTTTTTATTGGAGA+AGG | - | chr4.4:9836476-9836495 | None:intergenic | 30.0% |
| AAATTGACATGCAGGAATGA+TGG | + | chr4.4:9832982-9833001 | MS.gene28139:intron | 35.0% | |
| AACAGCATAATGTCTGATGA+TGG | + | chr4.4:9835377-9835396 | MS.gene28139:intron | 35.0% | |
| AACATGTTGAGTCACTTGAT+AGG | - | chr4.4:9835157-9835176 | None:intergenic | 35.0% | |
| AATGCTATTCAAGCATCCAA+TGG | - | chr4.4:9832414-9832433 | None:intergenic | 35.0% | |
| AATTGACATGCAGGAATGAT+GGG | + | chr4.4:9832983-9833002 | MS.gene28139:intron | 35.0% | |
| ACATGTTGAGTCACTTGATA+GGG | - | chr4.4:9835156-9835175 | None:intergenic | 35.0% | |
| ACCTCAATTGCAATTTCAGT+TGG | - | chr4.4:9836661-9836680 | None:intergenic | 35.0% | |
| AGATTCTGCCGTATTTAAGT+GGG | + | chr4.4:9832861-9832880 | MS.gene28139:CDS | 35.0% | |
| ATCATACTTGTATTGCATGC+CGG | - | chr4.4:9832938-9832957 | None:intergenic | 35.0% | |
| ATGCAATAGATAAAAACGGG+GGG | + | chr4.4:9833454-9833473 | MS.gene28139:intron | 35.0% | |
| ATGTTGTTGGTCAGTTTCTT+TGG | + | chr4.4:9832894-9832913 | MS.gene28139:intron | 35.0% | |
| CAAATCCTCCTCTCTTAAAA+AGG | + | chr4.4:9834751-9834770 | MS.gene28139:intron | 35.0% | |
| CAACAAAAGATCCGTAAATG+TGG | - | chr4.4:9834304-9834323 | None:intergenic | 35.0% | |
| CAATAGAATGTAACAGTGGA+TGG | - | chr4.4:9832148-9832167 | None:intergenic | 35.0% | |
| GAGAATTGTGTGAGAATAAC+CGG | + | chr4.4:9831445-9831464 | MS.gene28139:CDS | 35.0% | |
| GCAGATATAGCAACAAAACT+GGG | + | chr4.4:9836610-9836629 | MS.gene28139:intron | 35.0% | |
| GCATATTTCAAGGAAAAGTG+TGG | + | chr4.4:9832477-9832496 | MS.gene28139:intron | 35.0% | |
| GCCAAATGTACCATTTGAAT+AGG | + | chr4.4:9833311-9833330 | MS.gene28139:intron | 35.0% | |
| GCCTATTCAAATGGTACATT+TGG | - | chr4.4:9833166-9833185 | None:intergenic | 35.0% | |
| GCTACAATAGAATGTAACAG+TGG | - | chr4.4:9832152-9832171 | None:intergenic | 35.0% | |
| GCTGAAATACCAATTCATGT+TGG | + | chr4.4:9834093-9834112 | MS.gene28139:intron | 35.0% | |
| GCTGATATATTCAAGCTCTA+TGG | + | chr4.4:9833729-9833748 | MS.gene28139:CDS | 35.0% | |
| GCTTGAATAGCATTTACTTC+TGG | + | chr4.4:9832420-9832439 | MS.gene28139:intron | 35.0% | |
| GGAATTTACCGCATATTTCA+AGG | + | chr4.4:9832467-9832486 | MS.gene28139:intron | 35.0% | |
| GGTTATTCTCACACAATTCT+CGG | - | chr4.4:9831446-9831465 | None:intergenic | 35.0% | |
| GTGATTAATATGCAAAGGGA+GGG | + | chr4.4:9831842-9831861 | MS.gene28139:intron | 35.0% | |
| GTTATTCTCACACAATTCTC+GGG | - | chr4.4:9831445-9831464 | None:intergenic | 35.0% | |
| TACTCTTGTAGCTTCAACAT+TGG | + | chr4.4:9832601-9832620 | MS.gene28139:intron | 35.0% | |
| TCCAACTGAAATTGCAATTG+AGG | + | chr4.4:9836657-9836676 | MS.gene28139:CDS | 35.0% | |
| TCTAAACGTTCAGACAACTT+AGG | - | chr4.4:9833835-9833854 | None:intergenic | 35.0% | |
| TGAAAAAGCTTCAGACGATT+CGG | + | chr4.4:9831494-9831513 | MS.gene28139:CDS | 35.0% | |
| TGCAGATATAGCAACAAAAC+TGG | + | chr4.4:9836609-9836628 | MS.gene28139:intron | 35.0% | |
| TGGTACTCTACAATTAACAG+TGG | + | chr4.4:9834113-9834132 | MS.gene28139:intron | 35.0% | |
| TGTCAAGTACCATCATGAAT+TGG | - | chr4.4:9834151-9834170 | None:intergenic | 35.0% | |
| TGTTCAAATGTTGCATCTAC+CGG | + | chr4.4:9831408-9831427 | MS.gene28139:CDS | 35.0% | |
| TTACATTTATAGTCGAGGTC+TGG | + | chr4.4:9834628-9834647 | MS.gene28139:intron | 35.0% | |
| TTACTTGCAGAAATCCTAAC+TGG | - | chr4.4:9834349-9834368 | None:intergenic | 35.0% | |
| TTCATATGATCGTATCAGCT+GGG | + | chr4.4:9834592-9834611 | MS.gene28139:intron | 35.0% | |
| TTCTAATGAGACTCTAGCAT+TGG | - | chr4.4:9836239-9836258 | None:intergenic | 35.0% | |
| TTGTTTACCATTTCAGACTG+AGG | + | chr4.4:9835526-9835545 | MS.gene28139:intron | 35.0% | |
| TTTCATATGATCGTATCAGC+TGG | + | chr4.4:9834591-9834610 | MS.gene28139:intron | 35.0% | |
| ! | AAACTTGTCATTTCTACAGG+TGG | + | chr4.4:9835575-9835594 | MS.gene28139:CDS | 35.0% |
| ! | AAAGCAACATGTCTTTTAGC+AGG | + | chr4.4:9835205-9835224 | MS.gene28139:intron | 35.0% |
| ! | AAGCAACATGTCTTTTAGCA+GGG | + | chr4.4:9835206-9835225 | MS.gene28139:intron | 35.0% |
| ! | ACAAATCAGACGCATCTTTT+CGG | - | chr4.4:9836636-9836655 | None:intergenic | 35.0% |
| ! | CTAGGAAGCATATAACATGA+AGG | - | chr4.4:9836543-9836562 | None:intergenic | 35.0% |
| ! | TGATACATTGATTGAGGAAG+AGG | + | chr4.4:9833689-9833708 | MS.gene28139:CDS | 35.0% |
| ! | TGTAGAGTACCAACATGAAT+TGG | - | chr4.4:9834105-9834124 | None:intergenic | 35.0% |
| !! | AAGAGAGGAGGATTTGTTTT+AGG | - | chr4.4:9834747-9834766 | None:intergenic | 35.0% |
| !! | AAGCAGAAAATAAGGGTACT+GGG | - | chr4.4:9833881-9833900 | None:intergenic | 35.0% |
| !! | AAGGCACTGAACCATTAATA+TGG | + | chr4.4:9835089-9835108 | MS.gene28139:intron | 35.0% |
| !! | ATTCGGTGTAATCAATGCAT+TGG | - | chr4.4:9836007-9836026 | None:intergenic | 35.0% |
| !! | TCTGATCTTTTTGAAGAGAG+AGG | + | chr4.4:9836196-9836215 | MS.gene28139:CDS | 35.0% |
| !! | TTTTTAAAGGCAGAAGATGG+TGG | + | chr4.4:9836842-9836861 | MS.gene28139:CDS | 35.0% |
| !!! | AGAGAGGAGGATTTGTTTTA+GGG | - | chr4.4:9834746-9834765 | None:intergenic | 35.0% |
| !!! | CTGAAGCTTTTTCAGTTTAC+CGG | - | chr4.4:9831488-9831507 | None:intergenic | 35.0% |
| !!! | GTTATGTTGGCTTCTAGTTT+TGG | + | chr4.4:9834667-9834686 | MS.gene28139:intron | 35.0% |
| AAAACTAGAGCAAAATCCCC+AGG | - | chr4.4:9833494-9833513 | None:intergenic | 40.0% | |
| AAAGATCCGTAAATGTGGGA+CGG | - | chr4.4:9834299-9834318 | None:intergenic | 40.0% | |
| AATAGATAAAAACGGGGGGA+GGG | + | chr4.4:9833458-9833477 | MS.gene28139:intron | 40.0% | |
| ACCAGTTGTAATTCACATGC+AGG | + | chr4.4:9836159-9836178 | MS.gene28139:intron | 40.0% | |
| AGAATCTTTCTTTCGCGAGA+AGG | + | chr4.4:9833752-9833771 | MS.gene28139:CDS | 40.0% | |
| AGTTTGTAGAGGCAGCAAAT+GGG | + | chr4.4:9834377-9834396 | MS.gene28139:intron | 40.0% | |
| ATACAGCGCCCACTTAAATA+CGG | - | chr4.4:9832872-9832891 | None:intergenic | 40.0% | |
| ATCCAATCACAAGTAGCTCA+TGG | + | chr4.4:9832218-9832237 | MS.gene28139:intron | 40.0% | |
| CAAACCTGTAAAGTTGGACA+GGG | - | chr4.4:9834556-9834575 | None:intergenic | 40.0% | |
| CAGATTCTGCCGTATTTAAG+TGG | + | chr4.4:9832860-9832879 | MS.gene28139:CDS | 40.0% | |
| CAGGAAATATATGCACAAGG+GGG | + | chr4.4:9835729-9835748 | MS.gene28139:intron | 40.0% | |
| CATGTTGAGTCACTTGATAG+GGG | - | chr4.4:9835155-9835174 | None:intergenic | 40.0% | |
| CCAGGAAATATATGCACAAG+GGG | + | chr4.4:9835728-9835747 | MS.gene28139:intron | 40.0% | |
| CGTGATTAATATGCAAAGGG+AGG | + | chr4.4:9831841-9831860 | MS.gene28139:intron | 40.0% | |
| CTGTTGTACGGCCTATTAAT+TGG | + | chr4.4:9835603-9835622 | MS.gene28139:CDS | 40.0% | |
| CTTCAACATTGGAATCTGGA+GGG | + | chr4.4:9832612-9832631 | MS.gene28139:CDS | 40.0% | |
| GCCAGGAAATATATGCACAA+GGG | + | chr4.4:9835727-9835746 | MS.gene28139:intron | 40.0% | |
| GTAGCTTCAACATTGGAATC+TGG | + | chr4.4:9832608-9832627 | MS.gene28139:intron | 40.0% | |
| TAACCGGTTGTTCTTTGAGT+CGG | + | chr4.4:9831461-9831480 | MS.gene28139:CDS | 40.0% | |
| TCATACTTGTATTGCATGCC+GGG | - | chr4.4:9832937-9832956 | None:intergenic | 40.0% | |
| TGCCAGGAAATATATGCACA+AGG | + | chr4.4:9835726-9835745 | MS.gene28139:intron | 40.0% | |
| TGGGCAAACTGGAATATTCA+CGG | + | chr4.4:9836732-9836751 | MS.gene28139:intron | 40.0% | |
| TGTTGCCAAACCTGTAAAGT+TGG | - | chr4.4:9834562-9834581 | None:intergenic | 40.0% | |
| TGTTTGGTTAGATGTACCAG+TGG | + | chr4.4:9835756-9835775 | MS.gene28139:CDS | 40.0% | |
| TTCAATGCCTCAGTCTGAAA+TGG | - | chr4.4:9835536-9835555 | None:intergenic | 40.0% | |
| TTCCATGAGCTACTTGTGAT+TGG | - | chr4.4:9832223-9832242 | None:intergenic | 40.0% | |
| TTCTGATCCAAAGTGTGTTC+AGG | + | chr4.4:9831938-9831957 | MS.gene28139:intron | 40.0% | |
| TTGATTGAGGAAGAGGTTGA+TGG | + | chr4.4:9833696-9833715 | MS.gene28139:CDS | 40.0% | |
| TTGTGTGTGATTAGTGACCA+GGG | + | chr4.4:9834949-9834968 | MS.gene28139:intron | 40.0% | |
| ! | ACTTTGGATCAGAAGTGTGT+CGG | - | chr4.4:9831932-9831951 | None:intergenic | 40.0% |
| ! | AGCAACATGTCTTTTAGCAG+GGG | + | chr4.4:9835207-9835226 | MS.gene28139:intron | 40.0% |
| ! | GAAATGGAGTTAAAGGCATG+AGG | - | chr4.4:9836699-9836718 | None:intergenic | 40.0% |
| ! | GAAGCAGAAAATAAGGGTAC+TGG | - | chr4.4:9833882-9833901 | None:intergenic | 40.0% |
| ! | GTGACTATTAGGGGAGTTTT+GGG | - | chr4.4:9832313-9832332 | None:intergenic | 40.0% |
| ! | TAGGGGTGTACATCAATACA+TGG | - | chr4.4:9835138-9835157 | None:intergenic | 40.0% |
| ! | TAGTTTGTAGAGGCAGCAAA+TGG | + | chr4.4:9834376-9834395 | MS.gene28139:intron | 40.0% |
| ! | TGTGACTATTAGGGGAGTTT+TGG | - | chr4.4:9832314-9832333 | None:intergenic | 40.0% |
| ! | TGTTTTGCAATAGGCAGATG+TGG | - | chr4.4:9833556-9833575 | None:intergenic | 40.0% |
| !! | ATGTCTGATGATGGCATGTA+CGG | + | chr4.4:9835386-9835405 | MS.gene28139:intron | 40.0% |
| !! | CAAAGGGAGGGTATTTAGAA+TGG | + | chr4.4:9831854-9831873 | MS.gene28139:intron | 40.0% |
| !! | TTTGTTAGCTTTGGGCAAAC+TGG | + | chr4.4:9836721-9836740 | MS.gene28139:intron | 40.0% |
| !!! | TGGGAAGCACTTATTTTGGT+AGG | - | chr4.4:9832551-9832570 | None:intergenic | 40.0% |
| AGAACCAACTCTTCCTCAAG+GGG | - | chr4.4:9832647-9832666 | None:intergenic | 45.0% | |
| ATAGATAAAAACGGGGGGAG+GGG | + | chr4.4:9833459-9833478 | MS.gene28139:intron | 45.0% | |
| ATATTGATCTCCCGTCTCCT+TGG | - | chr4.4:9833923-9833942 | None:intergenic | 45.0% | |
| ATCTTTCTTTCGCGAGAAGG+AGG | + | chr4.4:9833755-9833774 | MS.gene28139:CDS | 45.0% | |
| CAAGCTGGTGTGACTATTAG+GGG | - | chr4.4:9832322-9832341 | None:intergenic | 45.0% | |
| CAATAGATAAAAACGGGGGG+AGG | + | chr4.4:9833457-9833476 | MS.gene28139:intron | 45.0% | |
| CAGAACCAACTCTTCCTCAA+GGG | - | chr4.4:9832648-9832667 | None:intergenic | 45.0% | |
| CATTTATAGTCGAGGTCTGG+AGG | + | chr4.4:9834631-9834650 | MS.gene28139:intron | 45.0% | |
| CCAAACCTGTAAAGTTGGAC+AGG | - | chr4.4:9834557-9834576 | None:intergenic | 45.0% | |
| CCAAGCTGGTGTGACTATTA+GGG | - | chr4.4:9832323-9832342 | None:intergenic | 45.0% | |
| CCCCTTGTGCATATATTTCC+TGG | - | chr4.4:9835731-9835750 | None:intergenic | 45.0% | |
| CCTGTCCAACTTTACAGGTT+TGG | + | chr4.4:9834554-9834573 | MS.gene28139:intron | 45.0% | |
| CTAGTAGCAAGCTGGTAAGA+GGG | - | chr4.4:9834460-9834479 | None:intergenic | 45.0% | |
| CTGCTTCATCGTGTAGAAGA+GGG | - | chr4.4:9835825-9835844 | None:intergenic | 45.0% | |
| GAATGTCCGTCCCACATTTA+CGG | + | chr4.4:9834290-9834309 | MS.gene28139:intron | 45.0% | |
| GCCTGCATGTGAATTACAAC+TGG | - | chr4.4:9836163-9836182 | None:intergenic | 45.0% | |
| GCTTCAACATTGGAATCTGG+AGG | + | chr4.4:9832611-9832630 | MS.gene28139:intron | 45.0% | |
| GTCAACACCTGAACACACTT+TGG | - | chr4.4:9831948-9831967 | None:intergenic | 45.0% | |
| GTTGATGTCTCGTGATTACC+CGG | + | chr4.4:9832916-9832935 | MS.gene28139:intron | 45.0% | |
| GTTGTGTGTGATTAGTGACC+AGG | + | chr4.4:9834948-9834967 | MS.gene28139:intron | 45.0% | |
| TAGTAGCAAGCTGGTAAGAG+GGG | - | chr4.4:9834459-9834478 | None:intergenic | 45.0% | |
| TATAAGCTGCTCCAAGGAGA+CGG | + | chr4.4:9833909-9833928 | MS.gene28139:intron | 45.0% | |
| TATATTCTCAGGTGCCAAGC+TGG | - | chr4.4:9832337-9832356 | None:intergenic | 45.0% | |
| TCAGAACCAACTCTTCCTCA+AGG | - | chr4.4:9832649-9832668 | None:intergenic | 45.0% | |
| TCGGTGCAAGAAGGTTTCTA+CGG | + | chr4.4:9831513-9831532 | MS.gene28139:CDS | 45.0% | |
| TGACTGTGTGACAGAACCAT+AGG | - | chr4.4:9835494-9835513 | None:intergenic | 45.0% | |
| TGTGACATGGGTGAACAAAC+TGG | - | chr4.4:9834517-9834536 | None:intergenic | 45.0% | |
| TTCTCACACAATTCTCGGGT+CGG | - | chr4.4:9831441-9831460 | None:intergenic | 45.0% | |
| TTGACACTTAGCAGTGTCAC+AGG | + | chr4.4:9834165-9834184 | MS.gene28139:intron | 45.0% | |
| TTGTTCACCCATGTCACAGA+TGG | + | chr4.4:9834519-9834538 | MS.gene28139:intron | 45.0% | |
| ! | AGATGTACCAGTGGAAGCAT+TGG | + | chr4.4:9835765-9835784 | MS.gene28139:CDS | 45.0% |
| ! | AGTTCCTTTTACCGAGTCAG+TGG | + | chr4.4:9834268-9834287 | MS.gene28139:intron | 45.0% |
| ! | ATCTTTTAGCAGGGAGTCCA+TGG | - | chr4.4:9834981-9835000 | None:intergenic | 45.0% |
| ! | CTTGTCATTTCTACAGGTGG+AGG | + | chr4.4:9835578-9835597 | MS.gene28139:CDS | 45.0% |
| ! | GGGCGCTGTATATATGTTGT+TGG | + | chr4.4:9832881-9832900 | MS.gene28139:CDS | 45.0% |
| ! | TCTTTTAGCAGGGGAGTTCA+TGG | + | chr4.4:9835216-9835235 | MS.gene28139:intron | 45.0% |
| !! | CATTCCACTGACTCGGTAAA+AGG | - | chr4.4:9834275-9834294 | None:intergenic | 45.0% |
| !! | GAATTGTTTCGGCTAGCCTA+TGG | + | chr4.4:9835475-9835494 | MS.gene28139:intron | 45.0% |
| !! | TCAGAAGTGTGTCGGTGTTA+CGG | - | chr4.4:9831924-9831943 | None:intergenic | 45.0% |
| !! | TGAGGAAGAGTTGGTTCTGA+AGG | + | chr4.4:9832649-9832668 | MS.gene28139:CDS | 45.0% |
| !! | TGTGTTCAGGTGTTGACATG+TGG | + | chr4.4:9831951-9831970 | MS.gene28139:intron | 45.0% |
| !! | TTGTATGGGAATGGATTGCC+AGG | + | chr4.4:9835710-9835729 | MS.gene28139:intron | 45.0% |
| !! | AAAAAATAATTTCTAAATTT+GGG | - | chr4.4:9835961-9835980 | None:intergenic | 5.0% |
| !! | TAAAAAATAATTTCTAAATT+TGG | - | chr4.4:9835962-9835981 | None:intergenic | 5.0% |
| !! | TTAATTGAAAAAAAAAAAAA+AGG | + | chr4.4:9832446-9832465 | MS.gene28139:intron | 5.0% |
| AAATGTTAACGAGTGCCCCC+GGG | - | chr4.4:9836068-9836087 | None:intergenic | 50.0% | |
| ACCTGTAAAGTTGGACAGGG+CGG | - | chr4.4:9834553-9834572 | None:intergenic | 50.0% | |
| AGCAGGAGATGCATACACTG+CGG | + | chr4.4:9835840-9835859 | MS.gene28139:CDS | 50.0% | |
| AGGGCATAAGTTTCCCCTTG+AGG | + | chr4.4:9832631-9832650 | MS.gene28139:CDS | 50.0% | |
| AGGGCGAGAATTAGTTCCCA+CGG | - | chr4.4:9835806-9835825 | None:intergenic | 50.0% | |
| AGTAGCAAGCTGGTAAGAGG+GGG | - | chr4.4:9834458-9834477 | None:intergenic | 50.0% | |
| ATAAGCTGCTCCAAGGAGAC+GGG | + | chr4.4:9833910-9833929 | MS.gene28139:intron | 50.0% | |
| CCCTAATAGTCACACCAGCT+TGG | + | chr4.4:9832320-9832339 | MS.gene28139:intron | 50.0% | |
| CCTAGTAGCAAGCTGGTAAG+AGG | - | chr4.4:9834461-9834480 | None:intergenic | 50.0% | |
| CCTCTTCTACACGATGAAGC+AGG | + | chr4.4:9835823-9835842 | MS.gene28139:CDS | 50.0% | |
| CCTGCTTCATCGTGTAGAAG+AGG | - | chr4.4:9835826-9835845 | None:intergenic | 50.0% | |
| GAAATGTTAACGAGTGCCCC+CGG | - | chr4.4:9836069-9836088 | None:intergenic | 50.0% | |
| GAGAAGGAGGTCAGTTGGAA+AGG | + | chr4.4:9833768-9833787 | MS.gene28139:intron | 50.0% | |
| GCCAAAAGAATTGCAGCCGT+GGG | + | chr4.4:9835787-9835806 | MS.gene28139:CDS | 50.0% | |
| GCCAAGCTGGTGTGACTATT+AGG | - | chr4.4:9832324-9832343 | None:intergenic | 50.0% | |
| GGTCCGACTCAAAGAACAAC+CGG | - | chr4.4:9831467-9831486 | None:intergenic | 50.0% | |
| GGTTGTTCTTTGAGTCGGAC+CGG | + | chr4.4:9831466-9831485 | MS.gene28139:CDS | 50.0% | |
| GTTTCCCCTTGAGGAAGAGT+TGG | + | chr4.4:9832640-9832659 | MS.gene28139:CDS | 50.0% | |
| TAGATAAAAACGGGGGGAGG+GGG | + | chr4.4:9833460-9833479 | MS.gene28139:intron | 50.0% | |
| TCACCCATGTCACAGATGGA+CGG | + | chr4.4:9834523-9834542 | MS.gene28139:intron | 50.0% | |
| TCTCACACAATTCTCGGGTC+GGG | - | chr4.4:9831440-9831459 | None:intergenic | 50.0% | |
| TTGCAGGCGCTAGAGCAAAT+TGG | + | chr4.4:9836815-9836834 | MS.gene28139:intron | 50.0% | |
| ! | CTTTTGGCCAATGCTTCCAC+TGG | - | chr4.4:9835775-9835794 | None:intergenic | 50.0% |
| ! | GCACTGACACTTCACATCGA+AGG | - | chr4.4:9834060-9834079 | None:intergenic | 50.0% |
| ! | TCCCACGGCTGCAATTCTTT+TGG | - | chr4.4:9835791-9835810 | None:intergenic | 50.0% |
| ! | TGCACAAGGGGGTTAGTGTT+TGG | + | chr4.4:9835740-9835759 | MS.gene28139:CDS | 50.0% |
| !! | AAGGTGCTTAAAGAGTGCCC+CGG | + | chr4.4:9836047-9836066 | MS.gene28139:intron | 50.0% |
| !! | ATGCAGGAATGATGGGCTCT+GGG | + | chr4.4:9832990-9833009 | MS.gene28139:intron | 50.0% |
| !! | CAGAAGTGTGTCGGTGTTAC+GGG | - | chr4.4:9831923-9831942 | None:intergenic | 50.0% |
| !! | CCTCTTACCAGCTTGCTACT+AGG | + | chr4.4:9834458-9834477 | MS.gene28139:intron | 50.0% |
| !! | TCAGACGATTCGGTGCAAGA+AGG | + | chr4.4:9831504-9831523 | MS.gene28139:CDS | 50.0% |
| !! | TGAGACTCTAGCATTGGCGT+TGG | - | chr4.4:9836233-9836252 | None:intergenic | 50.0% |
| AATGTTAACGAGTGCCCCCG+GGG | - | chr4.4:9836067-9836086 | None:intergenic | 55.0% | |
| ACCGCCCTGTCCAACTTTAC+AGG | + | chr4.4:9834549-9834568 | MS.gene28139:intron | 55.0% | |
| ACTCGCTCCTAGTAGCAAGC+TGG | - | chr4.4:9834468-9834487 | None:intergenic | 55.0% | |
| CACTTAGCAGTGTCACAGGC+AGG | + | chr4.4:9834169-9834188 | MS.gene28139:intron | 55.0% | |
| CCACCGTCCATCTGTGACAT+GGG | - | chr4.4:9834529-9834548 | None:intergenic | 55.0% | |
| GCTGTATCGCTACAGCGTAG+CGG | + | chr4.4:9834854-9834873 | MS.gene28139:intron | 55.0% | |
| GGCCAAAAGAATTGCAGCCG+TGG | + | chr4.4:9835786-9835805 | MS.gene28139:CDS | 55.0% | |
| GTAGAGGCAGCAAATGGGCA+TGG | + | chr4.4:9834382-9834401 | MS.gene28139:intron | 55.0% | |
| TAGCAGGGAGTCCATGGCAT+AGG | - | chr4.4:9834975-9834994 | None:intergenic | 55.0% | |
| TCCACCGTCCATCTGTGACA+TGG | - | chr4.4:9834530-9834549 | None:intergenic | 55.0% | |
| TCTTGTTAACGAGTGCCCCC+GGG | + | chr4.4:9835920-9835939 | MS.gene28139:intron | 55.0% | |
| TTCGCGAGAAGGAGGTCAGT+TGG | + | chr4.4:9833763-9833782 | MS.gene28139:intron | 55.0% | |
| TTCTCGGGTCGGGTAAGAAC+CGG | - | chr4.4:9831430-9831449 | None:intergenic | 55.0% | |
| ! | GGACGGACATTCCACTGACT+CGG | - | chr4.4:9834282-9834301 | None:intergenic | 55.0% |
| ! | GTCTTGTTAACGAGTGCCCC+CGG | + | chr4.4:9835919-9835938 | MS.gene28139:intron | 55.0% |
| !! | AAGCACTGACACGTCGACAC+CGG | + | chr4.4:9833944-9833963 | MS.gene28139:intron | 55.0% |
| !! | AGGTGCTTAAAGAGTGCCCC+GGG | + | chr4.4:9836048-9836067 | MS.gene28139:intron | 55.0% |
| !! | ATGCTTAAAGAGTGCCCCGG+GGG | - | chr4.4:9835938-9835957 | None:intergenic | 55.0% |
| !! | CAGGTGGAGGTGCTGTTGTA+CGG | + | chr4.4:9835591-9835610 | MS.gene28139:CDS | 55.0% |
| !! | CATGCAGGAATGATGGGCTC+TGG | + | chr4.4:9832989-9833008 | MS.gene28139:intron | 55.0% |
| !! | GATGCTTAAAGAGTGCCCCG+GGG | - | chr4.4:9835939-9835958 | None:intergenic | 55.0% |
| !! | GCTCTGGGAAGACAACTGTG+GGG | + | chr4.4:9833005-9833024 | MS.gene28139:CDS | 55.0% |
| !! | GGATGCTTAAAGAGTGCCCC+GGG | - | chr4.4:9835940-9835959 | None:intergenic | 55.0% |
| !! | GGCTCTGGGAAGACAACTGT+GGG | + | chr4.4:9833004-9833023 | MS.gene28139:CDS | 55.0% |
| !! | GGGATGCTTAAAGAGTGCCC+CGG | - | chr4.4:9835941-9835960 | None:intergenic | 55.0% |
| AGCAAGCTGGTAAGAGGGGG+TGG | - | chr4.4:9834455-9834474 | None:intergenic | 60.0% | |
| AGTGACCAGGGCCTATGCCA+TGG | + | chr4.4:9834961-9834980 | MS.gene28139:intron | 60.0% | |
| CCCATGTCACAGATGGACGG+TGG | + | chr4.4:9834526-9834545 | MS.gene28139:intron | 60.0% | |
| CTTGTTAACGAGTGCCCCCG+GGG | + | chr4.4:9835921-9835940 | MS.gene28139:intron | 60.0% | |
| GGAGGGGGTCAGTTATCCTG+GGG | + | chr4.4:9833475-9833494 | MS.gene28139:intron | 60.0% | |
| GGGAGGGGGTCAGTTATCCT+GGG | + | chr4.4:9833474-9833493 | MS.gene28139:intron | 60.0% | |
| !! | GGGCTCTGGGAAGACAACTG+TGG | + | chr4.4:9833003-9833022 | MS.gene28139:CDS | 60.0% |
| !! | GGTGCTTAAAGAGTGCCCCG+GGG | + | chr4.4:9836049-9836068 | MS.gene28139:intron | 60.0% |
| !! | GTGCTTAAAGAGTGCCCCGG+GGG | + | chr4.4:9836050-9836069 | MS.gene28139:intron | 60.0% |
| GGAGTCCATGGCATAGGCCC+TGG | - | chr4.4:9834969-9834988 | None:intergenic | 65.0% | |
| GGGGAGGGGGTCAGTTATCC+TGG | + | chr4.4:9833473-9833492 | MS.gene28139:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 9831394 | 9836877 | 9831394 | ID=MS.gene28139 |
| chr4.4 | mRNA | 9831394 | 9836877 | 9831394 | ID=MS.gene28139.t1;Parent=MS.gene28139 |
| chr4.4 | exon | 9831394 | 9831565 | 9831394 | ID=MS.gene28139.t1.exon1;Parent=MS.gene28139.t1 |
| chr4.4 | CDS | 9831394 | 9831565 | 9831394 | ID=cds.MS.gene28139.t1;Parent=MS.gene28139.t1 |
| chr4.4 | exon | 9832612 | 9832670 | 9832612 | ID=MS.gene28139.t1.exon2;Parent=MS.gene28139.t1 |
| chr4.4 | CDS | 9832612 | 9832670 | 9832612 | ID=cds.MS.gene28139.t1;Parent=MS.gene28139.t1 |
| chr4.4 | exon | 9832848 | 9832902 | 9832848 | ID=MS.gene28139.t1.exon3;Parent=MS.gene28139.t1 |
| chr4.4 | CDS | 9832848 | 9832902 | 9832848 | ID=cds.MS.gene28139.t1;Parent=MS.gene28139.t1 |
| chr4.4 | exon | 9832996 | 9833068 | 9832996 | ID=MS.gene28139.t1.exon4;Parent=MS.gene28139.t1 |
| chr4.4 | CDS | 9832996 | 9833068 | 9832996 | ID=cds.MS.gene28139.t1;Parent=MS.gene28139.t1 |
| chr4.4 | exon | 9833689 | 9833776 | 9833689 | ID=MS.gene28139.t1.exon5;Parent=MS.gene28139.t1 |
| chr4.4 | CDS | 9833689 | 9833776 | 9833689 | ID=cds.MS.gene28139.t1;Parent=MS.gene28139.t1 |
| chr4.4 | exon | 9835542 | 9835624 | 9835542 | ID=MS.gene28139.t1.exon6;Parent=MS.gene28139.t1 |
| chr4.4 | CDS | 9835542 | 9835624 | 9835542 | ID=cds.MS.gene28139.t1;Parent=MS.gene28139.t1 |
| chr4.4 | exon | 9835732 | 9835861 | 9835732 | ID=MS.gene28139.t1.exon7;Parent=MS.gene28139.t1 |
| chr4.4 | CDS | 9835732 | 9835861 | 9835732 | ID=cds.MS.gene28139.t1;Parent=MS.gene28139.t1 |
| chr4.4 | exon | 9836181 | 9836259 | 9836181 | ID=MS.gene28139.t1.exon8;Parent=MS.gene28139.t1 |
| chr4.4 | CDS | 9836181 | 9836259 | 9836181 | ID=cds.MS.gene28139.t1;Parent=MS.gene28139.t1 |
| chr4.4 | exon | 9836614 | 9836678 | 9836614 | ID=MS.gene28139.t1.exon9;Parent=MS.gene28139.t1 |
| chr4.4 | CDS | 9836614 | 9836678 | 9836614 | ID=cds.MS.gene28139.t1;Parent=MS.gene28139.t1 |
| chr4.4 | exon | 9836821 | 9836877 | 9836821 | ID=MS.gene28139.t1.exon10;Parent=MS.gene28139.t1 |
| chr4.4 | CDS | 9836821 | 9836877 | 9836821 | ID=cds.MS.gene28139.t1;Parent=MS.gene28139.t1 |
| Gene Sequence |
| Protein sequence |
