Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28395.t1 | XP_003630257.1 | 95.9 | 635 | 25 | 1 | 1 | 634 | 1 | 635 | 0.00E+00 | 1253 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28395.t1 | D4GYV5 | 24.7 | 449 | 264 | 17 | 87 | 529 | 37 | 417 | 3.3e-17 | 91.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28395.t1 | G7LE11 | 95.9 | 635 | 25 | 1 | 1 | 634 | 1 | 635 | 0.0e+00 | 1253.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050479 | MS.gene28395 | 0.832841 | 7.51E-56 | -1.69E-46 |
| MS.gene050547 | MS.gene28395 | 0.828424 | 9.06E-55 | -1.69E-46 |
| MS.gene050937 | MS.gene28395 | 0.804999 | 1.65E-49 | -1.69E-46 |
| MS.gene052015 | MS.gene28395 | 0.813991 | 1.93E-51 | -1.69E-46 |
| MS.gene052503 | MS.gene28395 | -0.800573 | 1.35E-48 | -1.69E-46 |
| MS.gene052825 | MS.gene28395 | -0.807788 | 4.26E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene28395 | -0.80361 | 3.21E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene28395 | 0.816976 | 4.19E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene28395 | 0.811325 | 7.41E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene28395 | -0.806836 | 6.78E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene28395 | -0.80302 | 4.25E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene28395 | -0.805896 | 1.07E-49 | -1.69E-46 |
| MS.gene056647 | MS.gene28395 | 0.801954 | 7.05E-49 | -1.69E-46 |
| MS.gene057014 | MS.gene28395 | 0.803936 | 2.75E-49 | -1.69E-46 |
| MS.gene057293 | MS.gene28395 | 0.810742 | 9.91E-51 | -1.69E-46 |
| MS.gene057770 | MS.gene28395 | 0.800771 | 1.23E-48 | -1.69E-46 |
| MS.gene058544 | MS.gene28395 | -0.817368 | 3.42E-52 | -1.69E-46 |
| MS.gene05914 | MS.gene28395 | -0.8082 | 3.48E-50 | -1.69E-46 |
| MS.gene059891 | MS.gene28395 | 0.822972 | 1.78E-53 | -1.69E-46 |
| MS.gene059892 | MS.gene28395 | 0.834757 | 2.49E-56 | -1.69E-46 |
| MS.gene060087 | MS.gene28395 | 0.803586 | 3.25E-49 | -1.69E-46 |
| MS.gene060358 | MS.gene28395 | 0.806285 | 8.86E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28395.t1 | MTR_8g093550 | 95.906 | 635 | 25 | 1 | 1 | 634 | 1 | 635 | 0.0 | 1270 |
| MS.gene28395.t1 | MTR_8g093560 | 68.731 | 662 | 164 | 9 | 1 | 634 | 16 | 662 | 0.0 | 917 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 134 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAGCAGCTTTGGCATTT+TGG | 0.161804 | 4.4:+9147572 | MS.gene28395:CDS |
| GCTCTCACTGTTTGTATTAT+TGG | 0.196779 | 4.4:-9147556 | None:intergenic |
| CATGCTTGGAGAAGGGAATT+TGG | 0.204693 | 4.4:-9148543 | None:intergenic |
| CTTGCGTTCGCTTCTATTGA+TGG | 0.228163 | 4.4:-9147749 | None:intergenic |
| CTTCTAGTTAAACTATAAAA+TGG | 0.259561 | 4.4:-9148595 | None:intergenic |
| TTCCCTAAAATCTCAATGTT+TGG | 0.262646 | 4.4:-9147679 | None:intergenic |
| GGGTCGATTGGTATCTTTAT+AGG | 0.264384 | 4.4:-9143696 | None:intergenic |
| ATCAGCCCACATAAGTTTCT+TGG | 0.287833 | 4.4:+9144763 | MS.gene28395:CDS |
| ACCATTCCAATCTACTTTCT+TGG | 0.289172 | 4.4:+9143588 | MS.gene28395:CDS |
| ATTCTTTCTCTCAAAATAGA+AGG | 0.304064 | 4.4:-9143509 | None:intergenic |
| GTAGAATTCAACTCTCCTTT+TGG | 0.313407 | 4.4:+9142692 | MS.gene28395:CDS |
| TCCCTAAAATCTCAATGTTT+GGG | 0.322790 | 4.4:-9147678 | None:intergenic |
| TACTTCTTGAAGCCTCTTGA+TGG | 0.336697 | 4.4:-9143471 | None:intergenic |
| TGACAATATAGCTTGTCTTT+TGG | 0.342303 | 4.4:-9147710 | None:intergenic |
| TCAGCTTGTAGTAATGTAAC+TGG | 0.345040 | 4.4:+9143734 | MS.gene28395:CDS |
| ATGCATAACTCAGAAAATAT+TGG | 0.345574 | 4.4:-9142497 | None:intergenic |
| CTTGGTGGCCCTGACTCTCC+AGG | 0.347337 | 4.4:+9144781 | MS.gene28395:CDS |
| AACAGTATCCCTGGAGAGTC+AGG | 0.353840 | 4.4:-9144790 | None:intergenic |
| ATAGAGTTTGTATCTATATA+TGG | 0.353882 | 4.4:+9148287 | MS.gene28395:CDS |
| ACTTTCTTGGAGGCAAAGTT+TGG | 0.360742 | 4.4:+9143601 | MS.gene28395:CDS |
| ATGCTTGGAGAAGGGAATTT+GGG | 0.382762 | 4.4:-9148542 | None:intergenic |
| TAGATTGGAATGGTGCTCAT+AGG | 0.390775 | 4.4:-9143579 | None:intergenic |
| ACATTGCTAAATGATCTCTT+TGG | 0.391713 | 4.4:+9147817 | MS.gene28395:CDS |
| TTGGCTGAGGTTGTAGAGAT+TGG | 0.398331 | 4.4:+9143620 | MS.gene28395:CDS |
| GTGAGAGTTACGTTGGAAAC+AGG | 0.400045 | 4.4:+9143348 | MS.gene28395:CDS |
| CCAGGATACATTGTACTTAG+AGG | 0.405453 | 4.4:+9147501 | MS.gene28395:intron |
| GGGTTATGTTGGTGTAAAAC+CGG | 0.407675 | 4.4:+9148199 | MS.gene28395:intron |
| ACAAACAGTGAGAGCAGCTT+TGG | 0.409550 | 4.4:+9147564 | MS.gene28395:CDS |
| AGATTCTTTCGAGGATTTGT+TGG | 0.413943 | 4.4:+9142589 | MS.gene28395:CDS |
| GCACTCATGCTATGCGGCTC+GGG | 0.419195 | 4.4:+9143437 | MS.gene28395:CDS |
| GACATAGAGGAAAGGGAAAA+CGG | 0.419630 | 4.4:+9147523 | MS.gene28395:CDS |
| AGCATGCAAAACCTTTGTAT+TGG | 0.421268 | 4.4:-9143796 | None:intergenic |
| AAAATCTCAATGTTTGGGTT+GGG | 0.422552 | 4.4:-9147673 | None:intergenic |
| CGAGGCGGGTGTGCTTGTGC+TGG | 0.427601 | 4.4:+9147850 | MS.gene28395:CDS |
| TTGCCTCCAAGAAAGTAGAT+TGG | 0.431939 | 4.4:-9143594 | None:intergenic |
| ACATAGAGGAAAGGGAAAAC+GGG | 0.438297 | 4.4:+9147524 | MS.gene28395:CDS |
| CTCACTGTTTGTATTATTGG+AGG | 0.439527 | 4.4:-9147553 | None:intergenic |
| TAAAATCTCAATGTTTGGGT+TGG | 0.441881 | 4.4:-9147674 | None:intergenic |
| ATATATAGATACAAACTCTA+TGG | 0.442580 | 4.4:-9148285 | None:intergenic |
| GCCTTGGTAAAGAAGAAAGA+TGG | 0.443504 | 4.4:+9143540 | MS.gene28395:CDS |
| TTCGAGGATTTGTTGGAGAT+AGG | 0.444413 | 4.4:+9142596 | MS.gene28395:CDS |
| AAGAGGCTTCAAGAAGTAAT+GGG | 0.454316 | 4.4:+9143476 | MS.gene28395:CDS |
| TATTCACTCAGATTCTTTCG+AGG | 0.454737 | 4.4:+9142580 | MS.gene28395:CDS |
| GAGATTGGCCTTGATGATCA+AGG | 0.455541 | 4.4:+9143635 | MS.gene28395:CDS |
| GTAGAAAGGCAGAAGATGTT+TGG | 0.455887 | 4.4:-9142786 | None:intergenic |
| CGTCAATAGCTTCAATGAAA+AGG | 0.456104 | 4.4:+9144882 | MS.gene28395:CDS |
| GTGGAGATTGACATGAGATC+GGG | 0.457650 | 4.4:+9144712 | MS.gene28395:CDS |
| TTATTGACCTTGTTTCTGCT+TGG | 0.461439 | 4.4:-9142524 | None:intergenic |
| TATGCTGATCACACGGCCTC+AGG | 0.461915 | 4.4:+9142731 | MS.gene28395:CDS |
| TCCTCCTCATCCATGTAGTA+AGG | 0.467151 | 4.4:-9148242 | None:intergenic |
| GATACCAATCGACCCTTGTT+GGG | 0.467394 | 4.4:+9143704 | MS.gene28395:CDS |
| TGTGCTTGTGCTGGACCTTA+CGG | 0.467618 | 4.4:+9147859 | MS.gene28395:CDS |
| TGCACTCATGCTATGCGGCT+CGG | 0.467742 | 4.4:+9143436 | MS.gene28395:CDS |
| CAAGAGGCTTCAAGAAGTAA+TGG | 0.469088 | 4.4:+9143475 | MS.gene28395:CDS |
| GTACCACCTCCACAAGTTGA+TGG | 0.471883 | 4.4:-9144850 | None:intergenic |
| CCACTGATTCATTACATGGC+AGG | 0.474462 | 4.4:-9142625 | None:intergenic |
| CTTAGAGGACATAGAGGAAA+GGG | 0.479020 | 4.4:+9147516 | MS.gene28395:CDS |
| CGCAAGACTAAGAACAAAAG+AGG | 0.484458 | 4.4:+9147766 | MS.gene28395:CDS |
| TTGGAGGCAAAGTTTGGCTG+AGG | 0.485112 | 4.4:+9143607 | MS.gene28395:CDS |
| ATTCCAATCTACTTTCTTGG+AGG | 0.488539 | 4.4:+9143591 | MS.gene28395:CDS |
| AATGTAAGAATTAAATCAGT+TGG | 0.490879 | 4.4:+9148467 | MS.gene28395:CDS |
| TTTATTTAGTGGTCCGTATG+TGG | 0.491567 | 4.4:+9144693 | MS.gene28395:intron |
| TCTTCCACTGATTCATTACA+TGG | 0.491814 | 4.4:-9142629 | None:intergenic |
| TTGTTCATTAACAGTATCCC+TGG | 0.497313 | 4.4:-9144799 | None:intergenic |
| ACAAGTTTCCTTGTACCAAA+AGG | 0.497839 | 4.4:-9142707 | None:intergenic |
| AAACATCTTCTGCCTTTCTA+CGG | 0.499154 | 4.4:+9142788 | MS.gene28395:CDS |
| ACATCTGGACAGACCATGCT+TGG | 0.501898 | 4.4:-9148557 | None:intergenic |
| GAAAGAATGTTGAGGTGCCT+TGG | 0.502619 | 4.4:+9143524 | MS.gene28395:CDS |
| AGAACACTGGGATCTACATC+TGG | 0.503224 | 4.4:-9148572 | None:intergenic |
| AGATTGGAATGGTGCTCATA+GGG | 0.519242 | 4.4:-9143578 | None:intergenic |
| GGACAGACCATGCTTGGAGA+AGG | 0.520334 | 4.4:-9148551 | None:intergenic |
| AAAGCTTGAAACTCTGATGA+AGG | 0.520437 | 4.4:+9148373 | MS.gene28395:CDS |
| TGGTTGAGGTCACAAATCAT+TGG | 0.521950 | 4.4:+9142662 | MS.gene28395:CDS |
| AGATCCCAACAAGGGTCGAT+TGG | 0.524725 | 4.4:-9143708 | None:intergenic |
| CAAATTCCCTTCTCCAAGCA+TGG | 0.525202 | 4.4:+9148544 | MS.gene28395:CDS |
| AATCAGTTGGTAAGATGAGA+AGG | 0.526323 | 4.4:+9148480 | MS.gene28395:CDS |
| AAAAGAGGTAAGATACTCAA+TGG | 0.527999 | 4.4:+9147781 | MS.gene28395:CDS |
| TTGGAATACAAGCTCGAGGC+GGG | 0.538102 | 4.4:+9147836 | MS.gene28395:CDS |
| AACTATAAAATGGAGAACAC+TGG | 0.538606 | 4.4:-9148585 | None:intergenic |
| AGATACCAATCGACCCTTGT+TGG | 0.539683 | 4.4:+9143703 | MS.gene28395:CDS |
| AATATGTCAATACCGTAGAA+AGG | 0.540918 | 4.4:-9142800 | None:intergenic |
| TCCTTACTACATGGATGAGG+AGG | 0.541042 | 4.4:+9148241 | MS.gene28395:CDS |
| TTGGTGGCCCTGACTCTCCA+GGG | 0.546252 | 4.4:+9144782 | MS.gene28395:CDS |
| GCTATGCGGCTCGGGCACAA+CGG | 0.546918 | 4.4:+9143445 | MS.gene28395:CDS |
| CAGATACACGAGCAATTGCT+AGG | 0.548273 | 4.4:+9143765 | MS.gene28395:CDS |
| TGTGGAGATTGACATGAGAT+CGG | 0.551632 | 4.4:+9144711 | MS.gene28395:CDS |
| TTCTTTCTCTCAAAATAGAA+GGG | 0.555590 | 4.4:-9143508 | None:intergenic |
| CCTCCATCAACTTGTGGAGG+TGG | 0.555833 | 4.4:+9144847 | MS.gene28395:CDS |
| CTTATGTGGGCTGATGAAAA+CGG | 0.557601 | 4.4:-9144755 | None:intergenic |
| TGATCAAGGGTTGCTTGACA+TGG | 0.558737 | 4.4:+9143649 | MS.gene28395:CDS |
| TGACGACGGTAGAACAAACT+TGG | 0.559748 | 4.4:+9142462 | MS.gene28395:CDS |
| AATTGAAGTTGTATAGCGGA+AGG | 0.567777 | 4.4:-9148319 | None:intergenic |
| GACAGACCATGCTTGGAGAA+GGG | 0.571080 | 4.4:-9148550 | None:intergenic |
| CCCATCTTTCTTCTTTACCA+AGG | 0.575313 | 4.4:-9143541 | None:intergenic |
| GGGCCACCAAGAAACTTATG+TGG | 0.578448 | 4.4:-9144769 | None:intergenic |
| AGCTTTGAAGCTACAACTTG+AGG | 0.579642 | 4.4:+9143673 | MS.gene28395:CDS |
| AGCCCACATAAGTTTCTTGG+TGG | 0.581206 | 4.4:+9144766 | MS.gene28395:CDS |
| CATAGCTCCAAGCAGAAACA+AGG | 0.584497 | 4.4:+9142517 | MS.gene28395:CDS |
| CTCATGTCAATCTCCACATA+CGG | 0.586246 | 4.4:-9144706 | None:intergenic |
| CATACTTGTGAGAGTTACGT+TGG | 0.588378 | 4.4:+9143341 | MS.gene28395:CDS |
| CAAGCAACCCTTGATCATCA+AGG | 0.588411 | 4.4:-9143643 | None:intergenic |
| ACTATAAAATGGAGAACACT+GGG | 0.591554 | 4.4:-9148584 | None:intergenic |
| TCACCTCCATCAACTTGTGG+AGG | 0.592933 | 4.4:+9144844 | MS.gene28395:CDS |
| GCACAACGGCAGCCATCAAG+AGG | 0.593525 | 4.4:+9143459 | MS.gene28395:CDS |
| CCTGCCATGTAATGAATCAG+TGG | 0.593664 | 4.4:+9142625 | MS.gene28395:CDS |
| TTGTATCTATATATGGTCAA+CGG | 0.594729 | 4.4:+9148294 | MS.gene28395:CDS |
| AGATTGGCCTTGATGATCAA+GGG | 0.600995 | 4.4:+9143636 | MS.gene28395:CDS |
| TTCAAATTGAAGTTGTATAG+CGG | 0.601025 | 4.4:-9148323 | None:intergenic |
| AGGCTTATTCACCAATACAA+AGG | 0.604707 | 4.4:+9143785 | MS.gene28395:CDS |
| TTGAGCAAATCATGTCCGTA+AGG | 0.609814 | 4.4:-9147874 | None:intergenic |
| CCTTGGTAAAGAAGAAAGAT+GGG | 0.611773 | 4.4:+9143541 | MS.gene28395:CDS |
| AAACTAACTCTAGTCCATCC+CGG | 0.622757 | 4.4:-9148218 | None:intergenic |
| TGTTAGATCAGCAATTCAAG+AGG | 0.626396 | 4.4:+9147921 | MS.gene28395:CDS |
| ACTTAGAGGACATAGAGGAA+AGG | 0.629801 | 4.4:+9147515 | MS.gene28395:CDS |
| ACAGTATCCCTGGAGAGTCA+GGG | 0.631162 | 4.4:-9144789 | None:intergenic |
| CTCTTTGGAATACAAGCTCG+AGG | 0.633421 | 4.4:+9147832 | MS.gene28395:CDS |
| TCCAAGAAAGTAGATTGGAA+TGG | 0.634807 | 4.4:-9143589 | None:intergenic |
| GGTTATGTTGGTGTAAAACC+GGG | 0.635004 | 4.4:+9148200 | MS.gene28395:CDS |
| CATAGAGGAAAGGGAAAACG+GGG | 0.640927 | 4.4:+9147525 | MS.gene28395:CDS |
| GAAGTGAAGACTGCGACCTG+AGG | 0.647793 | 4.4:-9142747 | None:intergenic |
| TGGAGATTGACATGAGATCG+GGG | 0.651246 | 4.4:+9144713 | MS.gene28395:CDS |
| AGCTGAGAAAGATCCCAACA+AGG | 0.657205 | 4.4:-9143717 | None:intergenic |
| ACTTGTCTATGCTGATCACA+CGG | 0.658126 | 4.4:+9142724 | MS.gene28395:CDS |
| GGCCACCAAGAAACTTATGT+GGG | 0.661192 | 4.4:-9144768 | None:intergenic |
| ATGTTGGTGTAAAACCGGGA+TGG | 0.664075 | 4.4:+9148204 | MS.gene28395:CDS |
| AATTAACTTCATGTTGACGA+CGG | 0.669839 | 4.4:+9142448 | None:intergenic |
| GCTGAGAAAGATCCCAACAA+GGG | 0.674394 | 4.4:-9143716 | None:intergenic |
| ATTGTACTTAGAGGACATAG+AGG | 0.684016 | 4.4:+9147510 | MS.gene28395:CDS |
| TTTGGAATACAAGCTCGAGG+CGG | 0.692897 | 4.4:+9147835 | MS.gene28395:CDS |
| GGAGATTGACATGAGATCGG+GGG | 0.699559 | 4.4:+9144714 | MS.gene28395:CDS |
| CCACCTCCACAAGTTGATGG+AGG | 0.701065 | 4.4:-9144847 | None:intergenic |
| TGGTAAAGAAGAAAGATGGG+TGG | 0.706827 | 4.4:+9143544 | MS.gene28395:CDS |
| GACGATGCACTCATGCTATG+CGG | 0.716236 | 4.4:+9143431 | MS.gene28395:CDS |
| ATAGAGGAAAGGGAAAACGG+GGG | 0.829558 | 4.4:+9147526 | MS.gene28395:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAACAATC+CGG | + | chr4.4:9147365-9147384 | MS.gene28395:intron | 10.0% |
| !! | AAAAAAAAAGTTGTTTAAAA+AGG | - | chr4.4:9147342-9147361 | None:intergenic | 10.0% |
| !! | AATATTATGTATTTAATCAT+TGG | - | chr4.4:9146966-9146985 | None:intergenic | 10.0% |
| !! | ATCTATGTTAATAAATTATA+TGG | - | chr4.4:9144079-9144098 | None:intergenic | 10.0% |
| !! | TCGTATAAAAAAATAAATTA+GGG | + | chr4.4:9143882-9143901 | MS.gene28395:intron | 10.0% |
| !! | TTCGTATAAAAAAATAAATT+AGG | + | chr4.4:9143881-9143900 | MS.gene28395:intron | 10.0% |
| !!! | AAAATGAATATTTTTTTTTG+TGG | - | chr4.4:9145689-9145708 | None:intergenic | 10.0% |
| !!! | ATCATTTTTGTTATAATTTT+TGG | - | chr4.4:9144964-9144983 | None:intergenic | 10.0% |
| !!! | ATTTTAATCTTAAATCAATA+AGG | + | chr4.4:9145448-9145467 | MS.gene28395:intron | 10.0% |
| !!! | TATACTATATATTTTTTTAG+GGG | + | chr4.4:9145233-9145252 | MS.gene28395:intron | 10.0% |
| !!! | TTAAAAAAAAAAAAAGCATT+TGG | + | chr4.4:9145869-9145888 | MS.gene28395:intron | 10.0% |
| !!! | TTATTAATTTGTTTATTTAG+TGG | + | chr4.4:9144682-9144701 | MS.gene28395:intron | 10.0% |
| !!! | TTATTGATTTAAGATTAAAA+TGG | - | chr4.4:9145449-9145468 | None:intergenic | 10.0% |
| !!! | TTATTTATTGTTTTTAAACA+GGG | + | chr4.4:9148179-9148198 | MS.gene28395:intron | 10.0% |
| !!! | TTTTTTGTTAGAAATTTAAA+AGG | + | chr4.4:9144914-9144933 | MS.gene28395:intron | 10.0% |
| !! | AATAAAAAAAAGATTAAGAC+CGG | - | chr4.4:9145850-9145869 | None:intergenic | 15.0% |
| !! | ATGTTTAACATGTTAAAAAA+AGG | - | chr4.4:9148152-9148171 | None:intergenic | 15.0% |
| !! | ATTTGAAAATGAACTAAATT+TGG | + | chr4.4:9144049-9144068 | MS.gene28395:intron | 15.0% |
| !! | TACATATAATATGATCAAAA+TGG | - | chr4.4:9144577-9144596 | None:intergenic | 15.0% |
| !! | TTTGAAAATGAACTAAATTT+GGG | + | chr4.4:9144050-9144069 | MS.gene28395:intron | 15.0% |
| !!! | ACTAGTATGTTTTTTTTTAA+GGG | + | chr4.4:9145971-9145990 | MS.gene28395:intron | 15.0% |
| !!! | AGATTTAAAATAATGGTAAA+AGG | + | chr4.4:9143909-9143928 | MS.gene28395:intron | 15.0% |
| !!! | ATATGTATCTCTTTTTATTA+CGG | + | chr4.4:9143085-9143104 | MS.gene28395:intron | 15.0% |
| !!! | ATGATGTAACATATTTTTTT+GGG | - | chr4.4:9145321-9145340 | None:intergenic | 15.0% |
| !!! | CTTATTTATTGTTTTTAAAC+AGG | + | chr4.4:9148178-9148197 | MS.gene28395:intron | 15.0% |
| !!! | CTTCTTTTTTTTTTTTTGTT+TGG | + | chr4.4:9147174-9147193 | MS.gene28395:intron | 15.0% |
| !!! | CTTTATTTTAGATTTCATTT+TGG | - | chr4.4:9145945-9145964 | None:intergenic | 15.0% |
| !!! | GGAAAATTTTCATTATTTTA+TGG | + | chr4.4:9143241-9143260 | MS.gene28395:intron | 15.0% |
| !!! | TAAAATATACAAGTTGAAAT+AGG | + | chr4.4:9146056-9146075 | MS.gene28395:intron | 15.0% |
| !!! | TACTAGTATGTTTTTTTTTA+AGG | + | chr4.4:9145970-9145989 | MS.gene28395:intron | 15.0% |
| !!! | TATATAAACTCTGTTTTATT+AGG | - | chr4.4:9145155-9145174 | None:intergenic | 15.0% |
| !!! | TATATTTTTATTTCAGAATG+TGG | - | chr4.4:9145490-9145509 | None:intergenic | 15.0% |
| !!! | TTTTAGACTTAATTATGTTT+AGG | - | chr4.4:9146041-9146060 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTCAAGTTTATTT+TGG | + | chr4.4:9144621-9144640 | MS.gene28395:intron | 15.0% |
| !! | AAAAATATGTTACATCATCT+TGG | + | chr4.4:9145323-9145342 | MS.gene28395:intron | 20.0% |
| !! | AAGGTATGCATAATTATTTA+GGG | + | chr4.4:9143832-9143851 | MS.gene28395:intron | 20.0% |
| !! | AAGTACATTAAAAAATGCTT+AGG | + | chr4.4:9143398-9143417 | MS.gene28395:CDS | 20.0% |
| !! | AATATAACCCATTAAATCAA+CGG | + | chr4.4:9146274-9146293 | MS.gene28395:intron | 20.0% |
| !! | AATGTAAGAATTAAATCAGT+TGG | + | chr4.4:9148467-9148486 | MS.gene28395:CDS | 20.0% |
| !! | ACAAAAATGTCGAAATTATT+AGG | - | chr4.4:9147285-9147304 | None:intergenic | 20.0% |
| !! | ATAGAGTTTGTATCTATATA+TGG | + | chr4.4:9148287-9148306 | MS.gene28395:CDS | 20.0% |
| !! | ATATATAGATACAAACTCTA+TGG | - | chr4.4:9148288-9148307 | None:intergenic | 20.0% |
| !! | ATCAAGAATTCAATATATGA+TGG | + | chr4.4:9146405-9146424 | MS.gene28395:intron | 20.0% |
| !! | CAAATAACTTTGAATGATTT+AGG | + | chr4.4:9145077-9145096 | MS.gene28395:intron | 20.0% |
| !! | CAAATTAAACTTTGATATCA+AGG | + | chr4.4:9146321-9146340 | MS.gene28395:intron | 20.0% |
| !! | TACAACTTCAATTTGAAAAA+TGG | + | chr4.4:9148329-9148348 | MS.gene28395:CDS | 20.0% |
| !! | TCAAGAATTCAATATATGAT+GGG | + | chr4.4:9146406-9146425 | MS.gene28395:intron | 20.0% |
| !! | TGTATCTCAAGTTATTAAAA+AGG | + | chr4.4:9143119-9143138 | MS.gene28395:intron | 20.0% |
| !! | TTGAAAATGAACTAAATTTG+GGG | + | chr4.4:9144051-9144070 | MS.gene28395:intron | 20.0% |
| !!! | AACATCATTTTTTTAACGTA+TGG | - | chr4.4:9145559-9145578 | None:intergenic | 20.0% |
| !!! | ACATCTACATTTTTTTATGA+AGG | - | chr4.4:9145032-9145051 | None:intergenic | 20.0% |
| !!! | ATCACTTCTTTTTTTTTGTT+TGG | + | chr4.4:9147042-9147061 | MS.gene28395:intron | 20.0% |
| !!! | ATGAATATTTTTTTTTGTGG+TGG | - | chr4.4:9145686-9145705 | None:intergenic | 20.0% |
| !!! | CATATTTGGTTTTTGTTTTT+TGG | + | chr4.4:9142817-9142836 | MS.gene28395:intron | 20.0% |
| !!! | CTACAATATTTTTGTCATTT+AGG | + | chr4.4:9144328-9144347 | MS.gene28395:intron | 20.0% |
| !!! | CTTAATTATGTTTAGGTTTT+TGG | - | chr4.4:9146034-9146053 | None:intergenic | 20.0% |
| !!! | GATATTTTGTCGAAATTATT+AGG | - | chr4.4:9147153-9147172 | None:intergenic | 20.0% |
| !!! | GATGATGTAACATATTTTTT+TGG | - | chr4.4:9145322-9145341 | None:intergenic | 20.0% |
| !!! | GATGATTTTAAGTTTCTTTT+TGG | - | chr4.4:9146182-9146201 | None:intergenic | 20.0% |
| !!! | GTCATAGTTTTATTTTATTG+TGG | - | chr4.4:9145919-9145938 | None:intergenic | 20.0% |
| !!! | TAAGCATTTTTTAATGTACT+TGG | - | chr4.4:9143399-9143418 | None:intergenic | 20.0% |
| !!! | TATTTTGAAGATCAAATTAG+TGG | - | chr4.4:9146604-9146623 | None:intergenic | 20.0% |
| !!! | TGATGTAACATATTTTTTTG+GGG | - | chr4.4:9145320-9145339 | None:intergenic | 20.0% |
| !!! | TTTATTTCCGTTGATTTAAT+GGG | - | chr4.4:9146284-9146303 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTTTGCCACT+AGG | + | chr4.4:9145422-9145441 | MS.gene28395:intron | 20.0% |
| ! | AAATTAAATAGGAGAGTGAT+TGG | + | chr4.4:9143982-9144001 | MS.gene28395:intron | 25.0% |
| ! | ATCTCTCACATCTTAATAAT+AGG | + | chr4.4:9146633-9146652 | MS.gene28395:intron | 25.0% |
| ! | ATGCATAACTCAGAAAATAT+TGG | - | chr4.4:9142500-9142519 | None:intergenic | 25.0% |
| ! | ATGGGATGTTATAATGAATA+CGG | + | chr4.4:9146424-9146443 | MS.gene28395:intron | 25.0% |
| ! | ATTAGCAAGCTACTAAAATT+AGG | - | chr4.4:9144520-9144539 | None:intergenic | 25.0% |
| ! | ATTAGGGACGAATATATATA+CGG | - | chr4.4:9144503-9144522 | None:intergenic | 25.0% |
| ! | ATTCTTTCTCTCAAAATAGA+AGG | - | chr4.4:9143512-9143531 | None:intergenic | 25.0% |
| ! | CAAGGTATGCATAATTATTT+AGG | + | chr4.4:9143831-9143850 | MS.gene28395:intron | 25.0% |
| ! | GATACATATACGTAGTTAAA+AGG | - | chr4.4:9143074-9143093 | None:intergenic | 25.0% |
| ! | GTCGTTTGTGTAAATTAAAT+AGG | + | chr4.4:9143971-9143990 | MS.gene28395:intron | 25.0% |
| ! | GTGTGCAGTAATTAAATATT+CGG | - | chr4.4:9146545-9146564 | None:intergenic | 25.0% |
| ! | TACATTAAAAAATGCTTAGG+TGG | + | chr4.4:9143401-9143420 | MS.gene28395:CDS | 25.0% |
| ! | TATGAAACTATGCTATATGT+AGG | + | chr4.4:9143311-9143330 | MS.gene28395:intron | 25.0% |
| ! | TCTCTCACATCTTAATAATA+GGG | + | chr4.4:9146634-9146653 | MS.gene28395:intron | 25.0% |
| ! | TGAAAATGAACTAAATTTGG+GGG | + | chr4.4:9144052-9144071 | MS.gene28395:intron | 25.0% |
| ! | TTAGCAAGCTACTAAAATTA+GGG | - | chr4.4:9144519-9144538 | None:intergenic | 25.0% |
| ! | TTCAAATTGAAGTTGTATAG+CGG | - | chr4.4:9148326-9148345 | None:intergenic | 25.0% |
| ! | TTCATGAATTGATATGCTTT+AGG | - | chr4.4:9144421-9144440 | None:intergenic | 25.0% |
| ! | TTCTTTCTCTCAAAATAGAA+GGG | - | chr4.4:9143511-9143530 | None:intergenic | 25.0% |
| ! | TTGAAGTAAAAAAAGAAACG+TGG | + | chr4.4:9148041-9148060 | MS.gene28395:intron | 25.0% |
| ! | TTGTAGAAAATTTAGACCTT+AGG | - | chr4.4:9144291-9144310 | None:intergenic | 25.0% |
| ! | TTGTATCTATATATGGTCAA+CGG | + | chr4.4:9148294-9148313 | MS.gene28395:CDS | 25.0% |
| !! | ATTTAATTTACACAAACGAC+AGG | - | chr4.4:9143971-9143990 | None:intergenic | 25.0% |
| !! | CTCTAAAAAAAAATCAACCT+AGG | - | chr4.4:9146358-9146377 | None:intergenic | 25.0% |
| !! | GGGACAAAGATTTAAAATAA+TGG | + | chr4.4:9143902-9143921 | MS.gene28395:intron | 25.0% |
| !! | GTTGATTTAAACATCATTTG+AGG | - | chr4.4:9147449-9147468 | None:intergenic | 25.0% |
| !! | TCTTTTTATTACGGTAACTA+CGG | + | chr4.4:9143094-9143113 | MS.gene28395:intron | 25.0% |
| !! | TGTCATTTAGGTTATAGTTT+AGG | + | chr4.4:9144340-9144359 | MS.gene28395:intron | 25.0% |
| !! | TTATTACGAACACACATTTT+TGG | + | chr4.4:9147993-9148012 | MS.gene28395:intron | 25.0% |
| !!! | AATGATTTTTTCAAAGCAGA+TGG | + | chr4.4:9148437-9148456 | MS.gene28395:CDS | 25.0% |
| !!! | ACACATATTTGGTTTGTTAT+AGG | + | chr4.4:9142844-9142863 | MS.gene28395:intron | 25.0% |
| !!! | ATATCATACTCTTTTTTTGC+AGG | - | chr4.4:9144187-9144206 | None:intergenic | 25.0% |
| !!! | ATTTTAAGTTTCTTTTTGGC+AGG | - | chr4.4:9146178-9146197 | None:intergenic | 25.0% |
| !!! | CACACATTTTTGGAAAATAT+TGG | + | chr4.4:9148003-9148022 | MS.gene28395:intron | 25.0% |
| !!! | CTTTTTTGATAGATATGTGA+TGG | - | chr4.4:9146131-9146150 | None:intergenic | 25.0% |
| !!! | GCAAATTTTCTAAAATTACC+TGG | + | chr4.4:9144110-9144129 | MS.gene28395:intron | 25.0% |
| !!! | GGGACTAAATTTTGATAATA+TGG | + | chr4.4:9146654-9146673 | MS.gene28395:intron | 25.0% |
| !!! | GTTTATTTCCGTTGATTTAA+TGG | - | chr4.4:9146285-9146304 | None:intergenic | 25.0% |
| !!! | TAAACTCTGTTTTATTAGGA+AGG | - | chr4.4:9145151-9145170 | None:intergenic | 25.0% |
| !!! | TTTTAAGTTTCTTTTTGGCA+GGG | - | chr4.4:9146177-9146196 | None:intergenic | 25.0% |
| !!! | TTTTTGGTTACACACATATT+TGG | + | chr4.4:9142833-9142852 | MS.gene28395:intron | 25.0% |
| !!! | TTTTTTGCACAAGAATATTC+TGG | + | chr4.4:9144255-9144274 | MS.gene28395:intron | 25.0% |
| AAAAGAGGTAAGATACTCAA+TGG | + | chr4.4:9147781-9147800 | MS.gene28395:CDS | 30.0% | |
| AAATGTCGAAATTATTAGGC+CGG | - | chr4.4:9147281-9147300 | None:intergenic | 30.0% | |
| AACTATAAAATGGAGAACAC+TGG | - | chr4.4:9148588-9148607 | None:intergenic | 30.0% | |
| AATATGTCAATACCGTAGAA+AGG | - | chr4.4:9142803-9142822 | None:intergenic | 30.0% | |
| ACAACACATGATAATATGCA+AGG | + | chr4.4:9145643-9145662 | MS.gene28395:intron | 30.0% | |
| ACATGATAATATGCAAGGTT+CGG | + | chr4.4:9145648-9145667 | MS.gene28395:intron | 30.0% | |
| ACATTGCTAAATGATCTCTT+TGG | + | chr4.4:9147817-9147836 | MS.gene28395:CDS | 30.0% | |
| ACTATAAAATGGAGAACACT+GGG | - | chr4.4:9148587-9148606 | None:intergenic | 30.0% | |
| AGCACTTATCACAAATTACA+GGG | + | chr4.4:9143220-9143239 | MS.gene28395:intron | 30.0% | |
| ATGATGTAACATTCAGAATG+TGG | - | chr4.4:9145293-9145312 | None:intergenic | 30.0% | |
| ATTAAAAAATGCTTAGGTGG+TGG | + | chr4.4:9143404-9143423 | MS.gene28395:CDS | 30.0% | |
| CAAATTGAATTAGTACCAAG+AGG | + | chr4.4:9143155-9143174 | MS.gene28395:intron | 30.0% | |
| CTTTCAAACATCATCTAATG+TGG | + | chr4.4:9147468-9147487 | MS.gene28395:intron | 30.0% | |
| GAGTGAATATTGCAAAAATC+AGG | - | chr4.4:9142569-9142588 | None:intergenic | 30.0% | |
| GATGTCTTAGAAGTTAGATT+AGG | + | chr4.4:9145047-9145066 | MS.gene28395:intron | 30.0% | |
| GATTTAAACATCATTTGAGG+CGG | - | chr4.4:9147446-9147465 | None:intergenic | 30.0% | |
| GCAGTAATTAAATATTCGGT+TGG | - | chr4.4:9146541-9146560 | None:intergenic | 30.0% | |
| TAAAATCTCAATGTTTGGGT+TGG | - | chr4.4:9147677-9147696 | None:intergenic | 30.0% | |
| TAAGATTAAAATGGTCCTAG+TGG | - | chr4.4:9145440-9145459 | None:intergenic | 30.0% | |
| TAATTCAGTACAGCTGTATA+TGG | + | chr4.4:9143281-9143300 | MS.gene28395:intron | 30.0% | |
| TAGCACTTATCACAAATTAC+AGG | + | chr4.4:9143219-9143238 | MS.gene28395:intron | 30.0% | |
| TCAATTTGAAAAATGGCAAC+TGG | + | chr4.4:9148336-9148355 | MS.gene28395:CDS | 30.0% | |
| TCCCTAAAATCTCAATGTTT+GGG | - | chr4.4:9147681-9147700 | None:intergenic | 30.0% | |
| TCTATAACAAACTAGAATGC+CGG | + | chr4.4:9145828-9145847 | MS.gene28395:intron | 30.0% | |
| TGATGTAACATTCAGAATGT+GGG | - | chr4.4:9145292-9145311 | None:intergenic | 30.0% | |
| TGTGAGTACAAATTCAACTT+AGG | - | chr4.4:9146511-9146530 | None:intergenic | 30.0% | |
| TTAAAAAATGCTTAGGTGGT+GGG | + | chr4.4:9143405-9143424 | MS.gene28395:CDS | 30.0% | |
| TTCCCTAAAATCTCAATGTT+TGG | - | chr4.4:9147682-9147701 | None:intergenic | 30.0% | |
| ! | AAAATCTCAATGTTTGGGTT+GGG | - | chr4.4:9147676-9147695 | None:intergenic | 30.0% |
| ! | AACCCAAACATTGAGATTTT+AGG | + | chr4.4:9147676-9147695 | MS.gene28395:CDS | 30.0% |
| ! | AAGAAAAACTATGTTGGTTG+AGG | + | chr4.4:9142648-9142667 | MS.gene28395:CDS | 30.0% |
| ! | AATTGATATGCTTTAGGCAA+AGG | - | chr4.4:9144415-9144434 | None:intergenic | 30.0% |
| ! | ACCCAAACATTGAGATTTTA+GGG | + | chr4.4:9147677-9147696 | MS.gene28395:CDS | 30.0% |
| ! | ATTTAAACATCATTTGAGGC+GGG | - | chr4.4:9147445-9147464 | None:intergenic | 30.0% |
| ! | ATTTAGGGTTGTCATTAACT+GGG | + | chr4.4:9143847-9143866 | MS.gene28395:intron | 30.0% |
| ! | GTTTTTAAACAGGGTTATGT+TGG | + | chr4.4:9148188-9148207 | MS.gene28395:intron | 30.0% |
| ! | TATTTAGGGTTGTCATTAAC+TGG | + | chr4.4:9143846-9143865 | MS.gene28395:intron | 30.0% |
| ! | TGAAGAGTTAATTTTCAACC+AGG | - | chr4.4:9144131-9144150 | None:intergenic | 30.0% |
| ! | TTCTGGATTTGAAATTCCTA+AGG | + | chr4.4:9144272-9144291 | MS.gene28395:intron | 30.0% |
| ! | TTTTGTCGAAATTATTAGGC+CGG | - | chr4.4:9147149-9147168 | None:intergenic | 30.0% |
| !! | TGACAATATAGCTTGTCTTT+TGG | - | chr4.4:9147713-9147732 | None:intergenic | 30.0% |
| !! | TTCTACGGTATTGACATATT+TGG | + | chr4.4:9142803-9142822 | MS.gene28395:intron | 30.0% |
| !! | TTTTGAGAGAAAGAATGTTG+AGG | + | chr4.4:9143516-9143535 | MS.gene28395:CDS | 30.0% |
| !!! | AGTTAGTTTTCCTTACTACA+TGG | + | chr4.4:9148232-9148251 | MS.gene28395:CDS | 30.0% |
| !!! | ATATTTTTTTTTGTGGTGGC+CGG | - | chr4.4:9145682-9145701 | None:intergenic | 30.0% |
| AAACATCTTCTGCCTTTCTA+CGG | + | chr4.4:9142788-9142807 | MS.gene28395:CDS | 35.0% | |
| AAAGCTTGAAACTCTGATGA+AGG | + | chr4.4:9148373-9148392 | MS.gene28395:CDS | 35.0% | |
| AAATCACACACACAAAGTAG+AGG | + | chr4.4:9147094-9147113 | MS.gene28395:intron | 35.0% | |
| AACAATCCGGCAAATTATCA+TGG | + | chr4.4:9147378-9147397 | MS.gene28395:intron | 35.0% | |
| AACCTATGTGAATAGGTATC+TGG | + | chr4.4:9144150-9144169 | MS.gene28395:intron | 35.0% | |
| AAGAGGCTTCAAGAAGTAAT+GGG | + | chr4.4:9143476-9143495 | MS.gene28395:CDS | 35.0% | |
| AATACACACGAAATGGATGT+CGG | - | chr4.4:9146084-9146103 | None:intergenic | 35.0% | |
| ACAAGTTTCCTTGTACCAAA+AGG | - | chr4.4:9142710-9142729 | None:intergenic | 35.0% | |
| ACAATCCGGCAAATTATCAT+GGG | + | chr4.4:9147379-9147398 | MS.gene28395:intron | 35.0% | |
| ACATCCATTTCGTGTGTATT+TGG | + | chr4.4:9146084-9146103 | MS.gene28395:intron | 35.0% | |
| ACCATTCCAATCTACTTTCT+TGG | + | chr4.4:9143588-9143607 | MS.gene28395:CDS | 35.0% | |
| ACTCTTCAACCTATGTGAAT+AGG | + | chr4.4:9144143-9144162 | MS.gene28395:intron | 35.0% | |
| AGATTCTTTCGAGGATTTGT+TGG | + | chr4.4:9142589-9142608 | MS.gene28395:CDS | 35.0% | |
| AGCATGCAAAACCTTTGTAT+TGG | - | chr4.4:9143799-9143818 | None:intergenic | 35.0% | |
| AGGCTTATTCACCAATACAA+AGG | + | chr4.4:9143785-9143804 | MS.gene28395:CDS | 35.0% | |
| AGGGAAACAAGAAGAAACAA+TGG | - | chr4.4:9146158-9146177 | None:intergenic | 35.0% | |
| ATACAATTCTTGAGGAACTC+CGG | - | chr4.4:9145127-9145146 | None:intergenic | 35.0% | |
| ATTCCAATCTACTTTCTTGG+AGG | + | chr4.4:9143591-9143610 | MS.gene28395:CDS | 35.0% | |
| ATTGTACTTAGAGGACATAG+AGG | + | chr4.4:9147510-9147529 | MS.gene28395:CDS | 35.0% | |
| CAGTGGAAGAAAAACTATGT+TGG | + | chr4.4:9142642-9142661 | MS.gene28395:CDS | 35.0% | |
| CCTTGGTAAAGAAGAAAGAT+GGG | + | chr4.4:9143541-9143560 | MS.gene28395:CDS | 35.0% | |
| CGTCAATAGCTTCAATGAAA+AGG | + | chr4.4:9144882-9144901 | MS.gene28395:CDS | 35.0% | |
| CTCACTGTTTGTATTATTGG+AGG | - | chr4.4:9147556-9147575 | None:intergenic | 35.0% | |
| GCAAAAATCAGGAGATGTTT+CGG | - | chr4.4:9142558-9142577 | None:intergenic | 35.0% | |
| GCTCTCACTGTTTGTATTAT+TGG | - | chr4.4:9147559-9147578 | None:intergenic | 35.0% | |
| TAAAAAATGCTTAGGTGGTG+GGG | + | chr4.4:9143406-9143425 | MS.gene28395:CDS | 35.0% | |
| TACACCAAATACACACGAAA+TGG | - | chr4.4:9146091-9146110 | None:intergenic | 35.0% | |
| TATTCACTCAGATTCTTTCG+AGG | + | chr4.4:9142580-9142599 | MS.gene28395:CDS | 35.0% | |
| TCAAGGAGTCAATTTATCCT+AGG | + | chr4.4:9146338-9146357 | MS.gene28395:intron | 35.0% | |
| TCAGCTTGTAGTAATGTAAC+TGG | + | chr4.4:9143734-9143753 | MS.gene28395:CDS | 35.0% | |
| TCCAAGAAAGTAGATTGGAA+TGG | - | chr4.4:9143592-9143611 | None:intergenic | 35.0% | |
| TGCTCATAGCTTAGTTAAAG+CGG | - | chr4.4:9146469-9146488 | None:intergenic | 35.0% | |
| TGTTAGATCAGCAATTCAAG+AGG | + | chr4.4:9147921-9147940 | MS.gene28395:CDS | 35.0% | |
| TTCCAGATACCTATTCACAT+AGG | - | chr4.4:9144155-9144174 | None:intergenic | 35.0% | |
| TTGTTCATTAACAGTATCCC+TGG | - | chr4.4:9144802-9144821 | None:intergenic | 35.0% | |
| TTTATTTAGTGGTCCGTATG+TGG | + | chr4.4:9144693-9144712 | MS.gene28395:intron | 35.0% | |
| ! | AATTGAAGTTGTATAGCGGA+AGG | - | chr4.4:9148322-9148341 | None:intergenic | 35.0% |
| ! | ACATTTTTGTCAGTTGAGCT+GGG | + | chr4.4:9147295-9147314 | MS.gene28395:intron | 35.0% |
| ! | GTAGAATTCAACTCTCCTTT+TGG | + | chr4.4:9142692-9142711 | MS.gene28395:CDS | 35.0% |
| ! | TCCTTCGTATTTTATTGCAC+CGG | + | chr4.4:9145105-9145124 | MS.gene28395:intron | 35.0% |
| ! | TCTATCCCATGATAATTTGC+CGG | - | chr4.4:9147387-9147406 | None:intergenic | 35.0% |
| ! | TTTAGGGTTGTCATTAACTG+GGG | + | chr4.4:9143848-9143867 | MS.gene28395:intron | 35.0% |
| ! | TTTTCCTTACTACATGGATG+AGG | + | chr4.4:9148238-9148257 | MS.gene28395:CDS | 35.0% |
| !! | AATCAGTTGGTAAGATGAGA+AGG | + | chr4.4:9148480-9148499 | MS.gene28395:CDS | 35.0% |
| !! | TCTTCCACTGATTCATTACA+TGG | - | chr4.4:9142632-9142651 | None:intergenic | 35.0% |
| !! | TTATTGACCTTGTTTCTGCT+TGG | - | chr4.4:9142527-9142546 | None:intergenic | 35.0% |
| !!! | TATTTTTTTTTGTGGTGGCC+GGG | - | chr4.4:9145681-9145700 | None:intergenic | 35.0% |
| AAACTAACTCTAGTCCATCC+CGG | - | chr4.4:9148221-9148240 | None:intergenic | 40.0% | |
| ACATAGAGGAAAGGGAAAAC+GGG | + | chr4.4:9147524-9147543 | MS.gene28395:CDS | 40.0% | |
| ACTTAGAGGACATAGAGGAA+AGG | + | chr4.4:9147515-9147534 | MS.gene28395:CDS | 40.0% | |
| ACTTAGGAGAGACAAGCAAA+CGG | - | chr4.4:9146495-9146514 | None:intergenic | 40.0% | |
| ACTTGTCTATGCTGATCACA+CGG | + | chr4.4:9142724-9142743 | MS.gene28395:CDS | 40.0% | |
| ACTTTCTTGGAGGCAAAGTT+TGG | + | chr4.4:9143601-9143620 | MS.gene28395:CDS | 40.0% | |
| AGATTGGAATGGTGCTCATA+GGG | - | chr4.4:9143581-9143600 | None:intergenic | 40.0% | |
| AGTCAAAAACTACGTGATCG+AGG | + | chr4.4:9146769-9146788 | MS.gene28395:intron | 40.0% | |
| ATCAGCCCACATAAGTTTCT+TGG | + | chr4.4:9144763-9144782 | MS.gene28395:CDS | 40.0% | |
| ATGCAGTCTCATATGATGAC+GGG | + | chr4.4:9143943-9143962 | MS.gene28395:intron | 40.0% | |
| ATGCTTGGAGAAGGGAATTT+GGG | - | chr4.4:9148545-9148564 | None:intergenic | 40.0% | |
| CAAGAGGCTTCAAGAAGTAA+TGG | + | chr4.4:9143475-9143494 | MS.gene28395:CDS | 40.0% | |
| CATACTTGTGAGAGTTACGT+TGG | + | chr4.4:9143341-9143360 | MS.gene28395:CDS | 40.0% | |
| CATGCAGTCTCATATGATGA+CGG | + | chr4.4:9143942-9143961 | MS.gene28395:intron | 40.0% | |
| CCAGGATACATTGTACTTAG+AGG | + | chr4.4:9147501-9147520 | MS.gene28395:intron | 40.0% | |
| CCCATCTTTCTTCTTTACCA+AGG | - | chr4.4:9143544-9143563 | None:intergenic | 40.0% | |
| CCTCTAAGTACAATGTATCC+TGG | - | chr4.4:9147504-9147523 | None:intergenic | 40.0% | |
| CGCAAGACTAAGAACAAAAG+AGG | + | chr4.4:9147766-9147785 | MS.gene28395:CDS | 40.0% | |
| CTCATGTCAATCTCCACATA+CGG | - | chr4.4:9144709-9144728 | None:intergenic | 40.0% | |
| CTTAGAGGACATAGAGGAAA+GGG | + | chr4.4:9147516-9147535 | MS.gene28395:CDS | 40.0% | |
| GAATTAGTACCAAGAGGATG+AGG | + | chr4.4:9143161-9143180 | MS.gene28395:intron | 40.0% | |
| GACATAGAGGAAAGGGAAAA+CGG | + | chr4.4:9147523-9147542 | MS.gene28395:CDS | 40.0% | |
| GCCTTGGTAAAGAAGAAAGA+TGG | + | chr4.4:9143540-9143559 | MS.gene28395:CDS | 40.0% | |
| GGGTCGATTGGTATCTTTAT+AGG | - | chr4.4:9143699-9143718 | None:intergenic | 40.0% | |
| GGGTTATGTTGGTGTAAAAC+CGG | + | chr4.4:9148199-9148218 | MS.gene28395:intron | 40.0% | |
| GGTGCAATAAAATACGAAGG+AGG | - | chr4.4:9145106-9145125 | None:intergenic | 40.0% | |
| GGTTATGTTGGTGTAAAACC+GGG | + | chr4.4:9148200-9148219 | MS.gene28395:CDS | 40.0% | |
| GTAGAAAGGCAGAAGATGTT+TGG | - | chr4.4:9142789-9142808 | None:intergenic | 40.0% | |
| GTCAAAAACTACGTGATCGA+GGG | + | chr4.4:9146770-9146789 | MS.gene28395:intron | 40.0% | |
| TAATGTGGTTCTTCTATGCC+AGG | + | chr4.4:9147483-9147502 | MS.gene28395:intron | 40.0% | |
| TACTTCTTGAAGCCTCTTGA+TGG | - | chr4.4:9143474-9143493 | None:intergenic | 40.0% | |
| TAGATTGGAATGGTGCTCAT+AGG | - | chr4.4:9143582-9143601 | None:intergenic | 40.0% | |
| TCAAAAACTACGTGATCGAG+GGG | + | chr4.4:9146771-9146790 | MS.gene28395:intron | 40.0% | |
| TCCGGTGCAATAAAATACGA+AGG | - | chr4.4:9145109-9145128 | None:intergenic | 40.0% | |
| TGGAAACAGGACGACAAAAA+TGG | + | chr4.4:9143361-9143380 | MS.gene28395:CDS | 40.0% | |
| TGGTAAAGAAGAAAGATGGG+TGG | + | chr4.4:9143544-9143563 | MS.gene28395:CDS | 40.0% | |
| TGGTTGAGGTCACAAATCAT+TGG | + | chr4.4:9142662-9142681 | MS.gene28395:CDS | 40.0% | |
| TGTGGAGATTGACATGAGAT+CGG | + | chr4.4:9144711-9144730 | MS.gene28395:CDS | 40.0% | |
| TTAGGGTTGTCATTAACTGG+GGG | + | chr4.4:9143849-9143868 | MS.gene28395:intron | 40.0% | |
| TTATAAGTACCCCGACTCAA+TGG | - | chr4.4:9145360-9145379 | None:intergenic | 40.0% | |
| TTCCAGCAGTGTGAACAATT+GGG | + | chr4.4:9144547-9144566 | MS.gene28395:intron | 40.0% | |
| TTGAGCAAATCATGTCCGTA+AGG | - | chr4.4:9147877-9147896 | None:intergenic | 40.0% | |
| TTGCCTCCAAGAAAGTAGAT+TGG | - | chr4.4:9143597-9143616 | None:intergenic | 40.0% | |
| TTTCCAGCAGTGTGAACAAT+TGG | + | chr4.4:9144546-9144565 | MS.gene28395:intron | 40.0% | |
| ! | AGGAAGGCATACAATTCTTG+AGG | - | chr4.4:9145135-9145154 | None:intergenic | 40.0% |
| ! | CTTAGTTAAAGCGGCTTTGT+CGG | - | chr4.4:9146460-9146479 | None:intergenic | 40.0% |
| ! | CTTATGTGGGCTGATGAAAA+CGG | - | chr4.4:9144758-9144777 | None:intergenic | 40.0% |
| ! | GAAAGATGGGTGGTTTTTGT+TGG | + | chr4.4:9143554-9143573 | MS.gene28395:CDS | 40.0% |
| ! | GACATTTTTGTCAGTTGAGC+TGG | + | chr4.4:9147294-9147313 | MS.gene28395:intron | 40.0% |
| ! | GAGTCGGGGTACTTATAAAA+TGG | + | chr4.4:9145362-9145381 | MS.gene28395:intron | 40.0% |
| ! | TCAACTCTCCTTTTGGTACA+AGG | + | chr4.4:9142699-9142718 | MS.gene28395:CDS | 40.0% |
| ! | TTCTGTTTTCCTCATCCTCT+TGG | - | chr4.4:9143173-9143192 | None:intergenic | 40.0% |
| ! | TTTTCACCTCCATCAACTTG+TGG | + | chr4.4:9144841-9144860 | MS.gene28395:CDS | 40.0% |
| !! | AAACGTGGATTAGAGAATCG+TGG | + | chr4.4:9148056-9148075 | MS.gene28395:intron | 40.0% |
| !! | AGATTGGCCTTGATGATCAA+GGG | + | chr4.4:9143636-9143655 | MS.gene28395:CDS | 40.0% |
| !! | AGCTTTGAAGCTACAACTTG+AGG | + | chr4.4:9143673-9143692 | MS.gene28395:CDS | 40.0% |
| !! | CATGCTTTGATTTTGCAGCA+AGG | + | chr4.4:9143813-9143832 | MS.gene28395:CDS | 40.0% |
| !! | TTCGAGGATTTGTTGGAGAT+AGG | + | chr4.4:9142596-9142615 | MS.gene28395:CDS | 40.0% |
| !!! | ATTTTTTTTTGTGGTGGCCG+GGG | - | chr4.4:9145680-9145699 | None:intergenic | 40.0% |
| AATTATTAGGCCGGACGTCA+TGG | - | chr4.4:9147140-9147159 | None:intergenic | 45.0% | |
| ACAAACAGTGAGAGCAGCTT+TGG | + | chr4.4:9147564-9147583 | MS.gene28395:CDS | 45.0% | |
| AGAACACTGGGATCTACATC+TGG | - | chr4.4:9148575-9148594 | None:intergenic | 45.0% | |
| AGATACCAATCGACCCTTGT+TGG | + | chr4.4:9143703-9143722 | MS.gene28395:CDS | 45.0% | |
| AGCCCACATAAGTTTCTTGG+TGG | + | chr4.4:9144766-9144785 | MS.gene28395:CDS | 45.0% | |
| AGCTGAGAAAGATCCCAACA+AGG | - | chr4.4:9143720-9143739 | None:intergenic | 45.0% | |
| ATAGAGGAAAGGGAAAACGG+GGG | + | chr4.4:9147526-9147545 | MS.gene28395:CDS | 45.0% | |
| ATAGGAGAGTGATTGGAGCA+TGG | + | chr4.4:9143989-9144008 | MS.gene28395:intron | 45.0% | |
| ATGAGATCGGGGGAAATTGA+TGG | + | chr4.4:9144724-9144743 | MS.gene28395:CDS | 45.0% | |
| ATGTTGGTGTAAAACCGGGA+TGG | + | chr4.4:9148204-9148223 | MS.gene28395:CDS | 45.0% | |
| CAAATTCCCTTCTCCAAGCA+TGG | + | chr4.4:9148544-9148563 | MS.gene28395:CDS | 45.0% | |
| CAAGCAACCCTTGATCATCA+AGG | - | chr4.4:9143646-9143665 | None:intergenic | 45.0% | |
| CAGATACACGAGCAATTGCT+AGG | + | chr4.4:9143765-9143784 | MS.gene28395:CDS | 45.0% | |
| CATAGAGGAAAGGGAAAACG+GGG | + | chr4.4:9147525-9147544 | MS.gene28395:CDS | 45.0% | |
| CATAGCTCCAAGCAGAAACA+AGG | + | chr4.4:9142517-9142536 | MS.gene28395:CDS | 45.0% | |
| CATGCTTGGAGAAGGGAATT+TGG | - | chr4.4:9148546-9148565 | None:intergenic | 45.0% | |
| CCTGCCATGTAATGAATCAG+TGG | + | chr4.4:9142625-9142644 | MS.gene28395:CDS | 45.0% | |
| CGGGAAATGACATGCATATC+GGG | - | chr4.4:9147426-9147445 | None:intergenic | 45.0% | |
| CGTCATCATATGAGACTGCA+TGG | - | chr4.4:9143944-9143963 | None:intergenic | 45.0% | |
| CTTGCGTTCGCTTCTATTGA+TGG | - | chr4.4:9147752-9147771 | None:intergenic | 45.0% | |
| GATACCAATCGACCCTTGTT+GGG | + | chr4.4:9143704-9143723 | MS.gene28395:CDS | 45.0% | |
| GCGGGAAATGACATGCATAT+CGG | - | chr4.4:9147427-9147446 | None:intergenic | 45.0% | |
| GCTGAGAAAGATCCCAACAA+GGG | - | chr4.4:9143719-9143738 | None:intergenic | 45.0% | |
| GGCCACCAAGAAACTTATGT+GGG | - | chr4.4:9144771-9144790 | None:intergenic | 45.0% | |
| GTGAGAGTTACGTTGGAAAC+AGG | + | chr4.4:9143348-9143367 | MS.gene28395:CDS | 45.0% | |
| GTGGAGATTGACATGAGATC+GGG | + | chr4.4:9144712-9144731 | MS.gene28395:CDS | 45.0% | |
| TCCTCCTCATCCATGTAGTA+AGG | - | chr4.4:9148245-9148264 | None:intergenic | 45.0% | |
| TCCTTACTACATGGATGAGG+AGG | + | chr4.4:9148241-9148260 | MS.gene28395:CDS | 45.0% | |
| TGACGACGGTAGAACAAACT+TGG | + | chr4.4:9142462-9142481 | MS.gene28395:CDS | 45.0% | |
| TGATCAAGGGTTGCTTGACA+TGG | + | chr4.4:9143649-9143668 | MS.gene28395:CDS | 45.0% | |
| TGGAGATTGACATGAGATCG+GGG | + | chr4.4:9144713-9144732 | MS.gene28395:CDS | 45.0% | |
| TTGGCTGAGGTTGTAGAGAT+TGG | + | chr4.4:9143620-9143639 | MS.gene28395:CDS | 45.0% | |
| ! | AGAAGCATAGACGTGCTGAA+CGG | + | chr4.4:9146240-9146259 | MS.gene28395:intron | 45.0% |
| ! | CACACACAAAGTAGAGGTAC+CGG | + | chr4.4:9147100-9147119 | MS.gene28395:intron | 45.0% |
| ! | GAAAGAATGTTGAGGTGCCT+TGG | + | chr4.4:9143524-9143543 | MS.gene28395:CDS | 45.0% |
| ! | TTTGGAATACAAGCTCGAGG+CGG | + | chr4.4:9147835-9147854 | MS.gene28395:CDS | 45.0% |
| !! | CCACTGATTCATTACATGGC+AGG | - | chr4.4:9142628-9142647 | None:intergenic | 45.0% |
| !! | CTCTTTGGAATACAAGCTCG+AGG | + | chr4.4:9147832-9147851 | MS.gene28395:CDS | 45.0% |
| !! | GAGAGCAGCTTTGGCATTTT+GGG | + | chr4.4:9147573-9147592 | MS.gene28395:CDS | 45.0% |
| !! | GAGATTGGCCTTGATGATCA+AGG | + | chr4.4:9143635-9143654 | MS.gene28395:CDS | 45.0% |
| !! | TGAGAGCAGCTTTGGCATTT+TGG | + | chr4.4:9147572-9147591 | MS.gene28395:CDS | 45.0% |
| !! | AATACATAATATTAATTATT+CGG | + | chr4.4:9146973-9146992 | MS.gene28395:intron | 5.0% |
| !!! | ATATACTATATATTTTTTTA+GGG | + | chr4.4:9145232-9145251 | MS.gene28395:intron | 5.0% |
| !!! | TATATACTATATATTTTTTT+AGG | + | chr4.4:9145231-9145250 | MS.gene28395:intron | 5.0% |
| AACAGTATCCCTGGAGAGTC+AGG | - | chr4.4:9144793-9144812 | None:intergenic | 50.0% | |
| ACAGTATCCCTGGAGAGTCA+GGG | - | chr4.4:9144792-9144811 | None:intergenic | 50.0% | |
| ACATCTGGACAGACCATGCT+TGG | - | chr4.4:9148560-9148579 | None:intergenic | 50.0% | |
| AGATCCCAACAAGGGTCGAT+TGG | - | chr4.4:9143711-9143730 | None:intergenic | 50.0% | |
| ATTGGAGCATGGAGGGAGAT+GGG | + | chr4.4:9144000-9144019 | MS.gene28395:intron | 50.0% | |
| CATGGTCAGAGTTCGAACTC+CGG | - | chr4.4:9147254-9147273 | None:intergenic | 50.0% | |
| GACAGACCATGCTTGGAGAA+GGG | - | chr4.4:9148553-9148572 | None:intergenic | 50.0% | |
| GACCCAATTGTTCACACTGC+TGG | - | chr4.4:9144552-9144571 | None:intergenic | 50.0% | |
| GACGATGCACTCATGCTATG+CGG | + | chr4.4:9143431-9143450 | MS.gene28395:CDS | 50.0% | |
| GAGAGTGATTGGAGCATGGA+GGG | + | chr4.4:9143993-9144012 | MS.gene28395:intron | 50.0% | |
| GGAGATTGACATGAGATCGG+GGG | + | chr4.4:9144714-9144733 | MS.gene28395:CDS | 50.0% | |
| GGGCCACCAAGAAACTTATG+TGG | - | chr4.4:9144772-9144791 | None:intergenic | 50.0% | |
| TCACCTCCATCAACTTGTGG+AGG | + | chr4.4:9144844-9144863 | MS.gene28395:CDS | 50.0% | |
| TGTGCTTGTGCTGGACCTTA+CGG | + | chr4.4:9147859-9147878 | MS.gene28395:CDS | 50.0% | |
| TTGGAATACAAGCTCGAGGC+GGG | + | chr4.4:9147836-9147855 | MS.gene28395:CDS | 50.0% | |
| TTGGAGGCAAAGTTTGGCTG+AGG | + | chr4.4:9143607-9143626 | MS.gene28395:CDS | 50.0% | |
| ! | ATGGAGGGAGATGGGTTTGA+TGG | + | chr4.4:9144008-9144027 | MS.gene28395:intron | 50.0% |
| ! | GTACCACCTCCACAAGTTGA+TGG | - | chr4.4:9144853-9144872 | None:intergenic | 50.0% |
| ! | TCCCTTACGTGCCATTGAGT+CGG | + | chr4.4:9145346-9145365 | MS.gene28395:intron | 50.0% |
| CATGGTCAGGGTTCGAACTC+CGG | - | chr4.4:9147122-9147141 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr4.4:9145618-9145637 | None:intergenic | 55.0% | |
| CCCGACTCAATGGCACGTAA+GGG | - | chr4.4:9145350-9145369 | None:intergenic | 55.0% | |
| CCTCCATCAACTTGTGGAGG+TGG | + | chr4.4:9144847-9144866 | MS.gene28395:CDS | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr4.4:9145615-9145634 | MS.gene28395:intron | 55.0% | |
| CGAACTCTGACCATGACGTC+CGG | + | chr4.4:9147259-9147278 | MS.gene28395:intron | 55.0% | |
| GAAGTGAAGACTGCGACCTG+AGG | - | chr4.4:9142750-9142769 | None:intergenic | 55.0% | |
| GATTGGAGCATGGAGGGAGA+TGG | + | chr4.4:9143999-9144018 | MS.gene28395:intron | 55.0% | |
| GGACAGACCATGCTTGGAGA+AGG | - | chr4.4:9148554-9148573 | None:intergenic | 55.0% | |
| GGAGAGTGATTGGAGCATGG+AGG | + | chr4.4:9143992-9144011 | MS.gene28395:intron | 55.0% | |
| TATGCTGATCACACGGCCTC+AGG | + | chr4.4:9142731-9142750 | MS.gene28395:CDS | 55.0% | |
| TGCACTCATGCTATGCGGCT+CGG | + | chr4.4:9143436-9143455 | MS.gene28395:CDS | 55.0% | |
| ! | CCCTTACGTGCCATTGAGTC+GGG | + | chr4.4:9145347-9145366 | MS.gene28395:intron | 55.0% |
| ! | CCTTACGTGCCATTGAGTCG+GGG | + | chr4.4:9145348-9145367 | MS.gene28395:intron | 55.0% |
| ! | GCAAGGTTCGGTTCAAACCC+CGG | + | chr4.4:9145660-9145679 | MS.gene28395:intron | 55.0% |
| !! | CCACCTCCACAAGTTGATGG+AGG | - | chr4.4:9144850-9144869 | None:intergenic | 55.0% |
| CCCCGACTCAATGGCACGTA+AGG | - | chr4.4:9145351-9145370 | None:intergenic | 60.0% | |
| CGAACCCTGACCATGACGTC+CGG | + | chr4.4:9147127-9147146 | MS.gene28395:intron | 60.0% | |
| GCACAACGGCAGCCATCAAG+AGG | + | chr4.4:9143459-9143478 | MS.gene28395:CDS | 60.0% | |
| GCACTCATGCTATGCGGCTC+GGG | + | chr4.4:9143437-9143456 | MS.gene28395:CDS | 60.0% | |
| TAGGCCGGACGTCATGGTCA+GGG | - | chr4.4:9147134-9147153 | None:intergenic | 60.0% | |
| TTAGGCCGGACGTCATGGTC+AGG | - | chr4.4:9147135-9147154 | None:intergenic | 60.0% | |
| ! | TTGGTGGCCCTGACTCTCCA+GGG | + | chr4.4:9144782-9144801 | MS.gene28395:CDS | 60.0% |
| ! | CTTGGTGGCCCTGACTCTCC+AGG | + | chr4.4:9144781-9144800 | MS.gene28395:CDS | 65.0% |
| ! | GCTATGCGGCTCGGGCACAA+CGG | + | chr4.4:9143445-9143464 | MS.gene28395:CDS | 65.0% |
| CGAGGCGGGTGTGCTTGTGC+TGG | + | chr4.4:9147850-9147869 | MS.gene28395:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 9142458 | 9148610 | 9142458 | ID=MS.gene28395 |
| chr4.4 | mRNA | 9142458 | 9148610 | 9142458 | ID=MS.gene28395.t1;Parent=MS.gene28395 |
| chr4.4 | exon | 9142458 | 9142809 | 9142458 | ID=MS.gene28395.t1.exon1;Parent=MS.gene28395.t1 |
| chr4.4 | CDS | 9142458 | 9142809 | 9142458 | ID=cds.MS.gene28395.t1;Parent=MS.gene28395.t1 |
| chr4.4 | exon | 9143333 | 9143834 | 9143333 | ID=MS.gene28395.t1.exon2;Parent=MS.gene28395.t1 |
| chr4.4 | CDS | 9143333 | 9143834 | 9143333 | ID=cds.MS.gene28395.t1;Parent=MS.gene28395.t1 |
| chr4.4 | exon | 9144702 | 9144903 | 9144702 | ID=MS.gene28395.t1.exon3;Parent=MS.gene28395.t1 |
| chr4.4 | CDS | 9144702 | 9144903 | 9144702 | ID=cds.MS.gene28395.t1;Parent=MS.gene28395.t1 |
| chr4.4 | exon | 9147505 | 9147942 | 9147505 | ID=MS.gene28395.t1.exon4;Parent=MS.gene28395.t1 |
| chr4.4 | CDS | 9147505 | 9147942 | 9147505 | ID=cds.MS.gene28395.t1;Parent=MS.gene28395.t1 |
| chr4.4 | exon | 9148200 | 9148610 | 9148200 | ID=MS.gene28395.t1.exon5;Parent=MS.gene28395.t1 |
| chr4.4 | CDS | 9148200 | 9148610 | 9148200 | ID=cds.MS.gene28395.t1;Parent=MS.gene28395.t1 |
| Gene Sequence |
| Protein sequence |
