AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28603

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28603.t1 MTR_8g032950 90.310 258 25 0 1 258 1 258 2.44e-167 472
MS.gene28603.t1 MTR_4g117960 69.922 256 76 1 4 258 3 258 1.23e-126 368
MS.gene28603.t1 MTR_2g034990 63.707 259 91 2 4 259 3 261 2.44e-113 334
MS.gene28603.t1 MTR_6g035265 65.098 255 83 3 4 258 3 251 2.54e-109 324
MS.gene28603.t1 MTR_2g035020 62.791 258 93 1 4 258 3 260 4.16e-109 324
MS.gene28603.t1 MTR_4g117980 61.240 258 97 1 4 258 3 260 3.99e-107 318
MS.gene28603.t1 MTR_7g012120 60.938 256 98 2 4 258 8 262 9.60e-103 307
MS.gene28603.t1 MTR_6g035185 60.465 258 99 1 4 258 3 260 8.76e-102 305
MS.gene28603.t1 MTR_5g029800 60.853 258 94 2 4 258 3 256 2.08e-99 299
MS.gene28603.t1 MTR_5g067170 59.387 261 99 3 3 259 2 259 1.61e-97 294
MS.gene28603.t1 MTR_0536s0020 52.549 255 110 3 6 258 12 257 2.93e-87 268
MS.gene28603.t1 MTR_4g117890 52.692 260 112 3 1 258 2 252 4.97e-86 264
MS.gene28603.t1 MTR_0536s0010 50.000 252 117 2 7 258 16 258 1.22e-79 248
MS.gene28603.t1 MTR_4g118000 51.793 251 111 2 8 258 8 248 3.03e-79 247
MS.gene28603.t1 MTR_4g117970 65.000 180 62 1 79 258 53 231 6.44e-76 236
MS.gene28603.t1 MTR_4g117950 49.407 253 120 2 7 259 1 245 6.83e-76 238
MS.gene28603.t1 MTR_2g035040 57.639 144 54 2 119 257 23 164 1.58e-50 170
MS.gene28603.t1 MTR_0536s0030 48.634 183 83 3 39 219 7 180 9.27e-50 167
MS.gene28603.t1 MTR_4g031800 36.364 253 156 3 9 259 6 255 6.15e-48 165
MS.gene28603.t1 MTR_7g070740 37.828 267 139 7 12 259 9 267 2.39e-41 148
MS.gene28603.t1 MTR_7g070800 37.903 248 136 4 7 241 1 243 5.74e-41 147
MS.gene28603.t1 MTR_4g485630 35.409 257 152 5 12 258 7 259 6.27e-41 147
MS.gene28603.t1 MTR_5g016660 35.294 255 154 4 11 255 9 262 2.43e-40 145
MS.gene28603.t1 MTR_2g035050 66.372 113 38 0 4 116 3 115 2.56e-40 136
MS.gene28603.t1 MTR_7g055710 35.496 262 152 5 11 259 10 267 1.39e-39 143
MS.gene28603.t1 MTR_7g070930 35.741 263 142 7 12 255 12 266 2.63e-38 140
MS.gene28603.t1 MTR_7g070860 36.585 246 138 4 9 241 4 244 3.00e-38 139
MS.gene28603.t1 MTR_7g070660 36.260 262 141 6 11 256 10 261 6.65e-38 139
MS.gene28603.t1 MTR_7g070780 38.866 247 129 6 10 241 9 248 1.49e-37 138
MS.gene28603.t1 MTR_4g108250 35.606 264 146 7 12 256 9 267 4.30e-36 134
MS.gene28603.t1 MTR_7g071040 33.948 271 163 6 1 256 1 270 1.20e-35 133
MS.gene28603.t1 MTR_7g070810 32.283 254 162 3 9 253 6 258 6.20e-35 130
MS.gene28603.t1 MTR_7g070610 34.831 267 147 7 12 259 11 269 8.17e-35 130
MS.gene28603.t1 MTR_6g035295 34.100 261 153 6 11 256 11 267 1.27e-33 127
MS.gene28603.t1 MTR_7g070940 34.979 243 146 4 9 241 6 246 2.85e-33 126
MS.gene28603.t1 MTR_5g045970 32.707 266 152 8 13 258 15 273 3.21e-33 126
MS.gene28603.t1 MTR_8g066610 32.075 265 162 6 10 258 7 269 1.94e-32 124
MS.gene28603.t1 MTR_5g039900 31.923 260 160 5 11 257 12 267 5.03e-32 123
MS.gene28603.t1 MTR_7g070910 32.184 261 156 7 12 256 9 264 5.91e-32 122
MS.gene28603.t1 MTR_7g070870 33.058 242 149 4 9 241 16 253 1.62e-31 121
MS.gene28603.t1 MTR_4g485590 33.594 256 132 7 13 257 10 238 7.12e-31 118
MS.gene28603.t1 MTR_7g102450 32.400 250 148 5 15 256 14 250 1.48e-30 119
MS.gene28603.t1 MTR_7g117405 31.200 250 162 4 15 255 15 263 7.27e-30 117
MS.gene28603.t1 MTR_4g485620 30.870 230 145 3 24 240 1 229 1.09e-29 116
MS.gene28603.t1 MTR_1g040310 32.593 270 163 8 4 259 5 269 2.10e-28 113
MS.gene28603.t1 MTR_5g045960 29.008 262 173 5 9 258 6 266 3.68e-28 112
MS.gene28603.t1 MTR_1g062380 31.128 257 160 6 16 258 20 273 6.29e-28 111
MS.gene28603.t1 MTR_5g040030 29.119 261 167 6 9 255 11 267 3.09e-27 109
MS.gene28603.t1 MTR_7g071050 39.106 179 94 4 12 183 11 181 2.33e-26 106
MS.gene28603.t1 MTR_7g102550 26.556 241 163 5 15 243 12 250 4.86e-24 100
MS.gene28603.t1 MTR_7g102560 30.888 259 160 9 12 256 7 260 6.87e-24 100
MS.gene28603.t1 MTR_8g044140 29.614 233 152 5 37 259 2 232 8.98e-24 99.8
MS.gene28603.t1 MTR_4g485640 30.364 247 144 8 22 257 219 448 1.03e-23 100
MS.gene28603.t1 MTR_7g102490 28.626 262 171 8 12 258 7 267 1.24e-21 94.0
MS.gene28603.t1 MTR_4g024020 30.303 264 167 8 12 259 7 269 2.74e-21 92.8
MS.gene28603.t1 MTR_7g470590 42.609 115 63 2 11 122 10 124 3.39e-21 86.7
MS.gene28603.t1 MTR_7g070570 42.609 115 63 2 11 122 10 124 3.39e-21 86.7
MS.gene28603.t1 MTR_7g102460 27.099 262 176 7 12 259 7 267 8.88e-21 91.3
MS.gene28603.t1 MTR_7g039570 31.638 177 112 3 11 181 13 186 7.40e-20 86.3
MS.gene28603.t1 MTR_7g102520 28.185 259 161 8 16 257 16 266 4.69e-18 83.6
MS.gene28603.t1 MTR_4g123553 25.389 193 117 5 2 193 5 171 4.91e-12 65.9
MS.gene28603.t1 MTR_2g008225 30.216 139 90 5 9 145 12 145 6.07e-12 65.5
MS.gene28603.t1 MTR_7g067330 28.736 174 113 6 10 178 5 172 1.22e-11 64.3
MS.gene28603.t1 MTR_8g068340 31.250 144 90 5 8 148 8 145 1.93e-11 63.9
MS.gene28603.t1 MTR_3g435310 28.244 131 90 2 9 139 15 141 1.97e-11 63.9
MS.gene28603.t1 MTR_2g008220 28.261 138 94 4 9 145 11 144 8.02e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28603.t1 AT2G36790 32.443 262 164 6 10 259 11 271 5.92e-34 128
MS.gene28603.t1 AT2G36770 32.955 264 164 5 7 258 9 271 6.96e-34 128
MS.gene28603.t1 AT2G36750 33.716 261 161 6 10 259 8 267 7.16e-34 128
MS.gene28603.t1 AT2G36800 32.700 263 163 6 10 259 10 271 2.41e-33 126
MS.gene28603.t1 AT4G34131 30.075 266 169 6 9 258 7 271 2.87e-32 123
MS.gene28603.t1 AT2G36780 32.031 256 161 7 15 258 17 271 1.09e-30 119
MS.gene28603.t1 AT4G34138 31.481 270 155 11 12 258 9 271 2.83e-30 118
MS.gene28603.t1 AT2G15480 27.715 267 170 7 12 258 8 271 1.47e-29 116
MS.gene28603.t1 AT2G15480 27.715 267 170 7 12 258 8 271 1.56e-29 116
MS.gene28603.t1 AT2G36760 30.268 261 169 6 10 258 12 271 2.14e-29 115
MS.gene28603.t1 AT2G15490 28.464 267 168 7 12 258 5 268 2.54e-28 112
MS.gene28603.t1 AT4G34135 27.068 266 177 6 9 258 8 272 2.61e-28 110
MS.gene28603.t1 AT2G15490 28.464 267 168 7 12 258 5 268 3.24e-28 112
MS.gene28603.t1 AT4G34135 27.068 266 177 6 9 258 8 272 1.18e-27 110
MS.gene28603.t1 AT3G53160 32.567 261 163 5 10 258 6 265 2.27e-27 110
MS.gene28603.t1 AT3G53150 27.839 273 175 9 1 256 10 277 2.04e-23 99.0
MS.gene28603.t1 AT2G15490 28.191 188 123 3 12 187 5 192 2.84e-20 87.8
MS.gene28603.t1 AT5G14860 26.459 257 158 9 15 244 11 263 3.49e-14 72.0
MS.gene28603.t1 AT1G10400 25.969 258 156 11 12 244 5 252 7.61e-12 65.1
MS.gene28603.t1 AT2G16890 25.703 249 160 10 15 243 12 255 6.03e-11 62.0
MS.gene28603.t1 AT2G16890 25.703 249 160 10 15 243 12 255 6.03e-11 62.0
MS.gene28603.t1 AT2G16890 25.703 249 160 10 15 243 12 255 7.11e-11 62.4
MS.gene28603.t1 AT2G16890 25.703 249 160 10 15 243 12 255 8.22e-11 62.0

Find 82 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATGAACGGTTTATTCTT+AGG 0.116264 8.1:-27715956 None:intergenic
GTGATTGAATGAGGAAAATT+TGG 0.178357 8.1:-27716014 None:intergenic
ACCTGGTCATATGATTCCTT+TGG 0.293652 8.1:+27715545 MS.gene28603:CDS
GGTGGAGATATGAGGCTTAT+TGG 0.302805 8.1:-27715886 None:intergenic
CTTCTCCACGAATTCTCTAA+TGG 0.327449 8.1:-27715808 None:intergenic
CGTCAGGAAGGTCGACTTGC+TGG 0.330668 8.1:-27715707 None:intergenic
CATATCTTGCCCATGGTGGC+AGG 0.345685 8.1:-27715759 None:intergenic
ATATGAACGGTTTATTCTTA+GGG 0.366103 8.1:-27715955 None:intergenic
AACAACTTTGCTGAACTTGA+TGG 0.386598 8.1:+27716122 MS.gene28603:CDS
TTCTCCACGAATTCTCTAAT+GGG 0.393354 8.1:-27715807 None:intergenic
GGTGGCAGGGTCAGTGGTGG+AGG 0.398789 8.1:-27715745 None:intergenic
TCAAATGCGATTAATTGCTT+TGG 0.400042 8.1:-27716053 None:intergenic
CTCGCTCTCATTTCCCCTCA+TGG 0.400107 8.1:-27716240 None:intergenic
GGTTACAAGGCTTGGCATCT+TGG 0.402916 8.1:+27716179 MS.gene28603:CDS
CCTGGTCATATGATTCCTTT+GGG 0.419398 8.1:+27715546 MS.gene28603:CDS
AAAGCAATTAATCGCATTTG+AGG 0.425080 8.1:+27716055 MS.gene28603:CDS
TACTGTAAAGAGGGAGAATC+CGG 0.437988 8.1:-27715919 None:intergenic
ATCGATGGAGGAGAGAGATT+TGG 0.438186 8.1:-27715646 None:intergenic
TGAGACAATCCGCAAAAGTA+AGG 0.441501 8.1:+27716088 MS.gene28603:CDS
CTTTGGTGGTGTTGAGCAAA+AGG 0.445166 8.1:-27716036 None:intergenic
GACAATGATTCAACGCCGTC+AGG 0.450229 8.1:-27715723 None:intergenic
ATATGACCAGGTGATAGAAA+TGG 0.461084 8.1:-27715534 None:intergenic
ATCTCCACCATTGCCTTCAC+CGG 0.463543 8.1:+27715900 MS.gene28603:CDS
GCCCATGGTGGCAGGGTCAG+TGG 0.465697 8.1:-27715751 None:intergenic
TTATTCTTAGGGATTCTATG+AGG 0.473109 8.1:-27715944 None:intergenic
AATGCGATTAATTGCTTTGG+TGG 0.480303 8.1:-27716050 None:intergenic
GAAATGAGCATTGGAGGGAG+TGG 0.482897 8.1:-27715619 None:intergenic
ACCACTGACCCTGCCACCAT+GGG 0.486447 8.1:+27715750 MS.gene28603:CDS
TTTGGTAAAGAAATGAGCAT+TGG 0.488916 8.1:-27715628 None:intergenic
CATGGTGGCAGGGTCAGTGG+TGG 0.489138 8.1:-27715748 None:intergenic
AAACCATGGGTTACAAGGCT+TGG 0.492411 8.1:+27716171 MS.gene28603:CDS
GTCAGGAAGGTCGACTTGCT+GGG 0.495955 8.1:-27715706 None:intergenic
CAGTCGGCAATGATGTAGTC+AGG 0.498245 8.1:-27715837 None:intergenic
CACCACTGACCCTGCCACCA+TGG 0.503659 8.1:+27715749 MS.gene28603:CDS
TTGCCGACTGTGTATACCCT+TGG 0.505815 8.1:+27715850 MS.gene28603:CDS
ACCTTTGCATATCTTGCCCA+TGG 0.508266 8.1:-27715766 None:intergenic
GGTAAAGAAATGAGCATTGG+AGG 0.510063 8.1:-27715625 None:intergenic
TGATCGTGACTTGTTGGCCA+TGG 0.514668 8.1:-27715593 None:intergenic
GGAAGGTCGACTTGCTGGGA+GGG 0.515166 8.1:-27715702 None:intergenic
TGAACCCATTAGAGAATTCG+TGG 0.519777 8.1:+27715803 MS.gene28603:CDS
GGAAGCATGTGAAGTTTCAA+TGG 0.522455 8.1:-27715513 None:intergenic
TCAGCAATGGAAAATGGGGT+TGG 0.526852 8.1:+27715480 None:intergenic
TGAGAAAACCATGGGTTACA+AGG 0.534767 8.1:+27716166 MS.gene28603:CDS
AAGGCAATGGTGGAGATATG+AGG 0.540237 8.1:-27715894 None:intergenic
AGGGAAAGTCGATGGTGTGA+AGG 0.548264 8.1:-27715683 None:intergenic
TGGCCAAGTCATTGATCCAA+GGG 0.550045 8.1:-27715866 None:intergenic
ATGATTCAACGCCGTCAGGA+AGG 0.555418 8.1:-27715719 None:intergenic
AATTCTTGTCAAAATATGAA+CGG 0.556451 8.1:-27715968 None:intergenic
ATGCTTCCATTTCTATCACC+TGG 0.556882 8.1:+27715528 MS.gene28603:CDS
CCCAAAGGAATCATATGACC+AGG 0.562986 8.1:-27715546 None:intergenic
GCAGCTCTGTTTGCATCCCA+TGG 0.566637 8.1:+27715576 MS.gene28603:CDS
CATTAGAGAATTCGTGGAGA+AGG 0.573122 8.1:+27715809 MS.gene28603:CDS
TTTATCAGCAATGGAAAATG+GGG 0.573687 8.1:+27715476 None:intergenic
TTGGCCAAGTCATTGATCCA+AGG 0.574098 8.1:-27715867 None:intergenic
TATTCTTAGGGATTCTATGA+GGG 0.574610 8.1:-27715943 None:intergenic
CTATGAGGGATACTGTAAAG+AGG 0.575800 8.1:-27715929 None:intergenic
ATGCCAAGCCTTGTAACCCA+TGG 0.576400 8.1:-27716174 None:intergenic
TGGTGATGATCGTGACTTGT+TGG 0.578665 8.1:-27715599 None:intergenic
GATCGTGACTTGTTGGCCAT+GGG 0.580057 8.1:-27715592 None:intergenic
ATATCTTGCCCATGGTGGCA+GGG 0.580533 8.1:-27715758 None:intergenic
ATACCCTTGGATCAATGACT+TGG 0.581491 8.1:+27715863 MS.gene28603:CDS
TATGAGGGATACTGTAAAGA+GGG 0.584504 8.1:-27715928 None:intergenic
GGAGAATCCGGTGAAGGCAA+TGG 0.587503 8.1:-27715907 None:intergenic
AGTCGATGGTGTGAAGGCGG+AGG 0.589210 8.1:-27715677 None:intergenic
GAGCAAAAGGTGATTGAATG+AGG 0.599051 8.1:-27716023 None:intergenic
GTAAAGAAATGAGCATTGGA+GGG 0.605073 8.1:-27715624 None:intergenic
GAATCCGGTGAAGGCAATGG+TGG 0.605639 8.1:-27715904 None:intergenic
TTTGCATATCTTGCCCATGG+TGG 0.606223 8.1:-27715763 None:intergenic
GAGACAATCCGCAAAAGTAA+GGG 0.609086 8.1:+27716089 MS.gene28603:CDS
CAAACACTATGAGAAAACCA+TGG 0.618415 8.1:+27716157 MS.gene28603:CDS
TTGCTGGGAGGGAAAGTCGA+TGG 0.621614 8.1:-27715691 None:intergenic
AAACACTATGAGAAAACCAT+GGG 0.623010 8.1:+27716158 MS.gene28603:CDS
ACCATGGGCAAGATATGCAA+AGG 0.627998 8.1:+27715765 MS.gene28603:CDS
GAAAGTCGATGGTGTGAAGG+CGG 0.633236 8.1:-27715680 None:intergenic
GATCCAAGGGTATACACAGT+CGG 0.633418 8.1:-27715853 None:intergenic
AAAGAGGGAGAATCCGGTGA+AGG 0.644440 8.1:-27715913 None:intergenic
CAGCAAGTCGACCTTCCTGA+CGG 0.661062 8.1:+27715708 MS.gene28603:CDS
AAAATGGGGTTGGAGTTGAA+CGG 0.663898 8.1:+27715490 MS.gene28603:CDS
TTTGAAGAGAAATCCATGAG+GGG 0.668058 8.1:+27716227 MS.gene28603:CDS
AGAGCTGCTATGTCACCCAA+AGG 0.671212 8.1:-27715561 None:intergenic
AGGAAGGTCGACTTGCTGGG+AGG 0.671440 8.1:-27715703 None:intergenic
CATGAGGGGAAATGAGAGCG+AGG 0.702530 8.1:+27716241 MS.gene28603:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCTTGTCAAAATATGAA+CGG - chr8.1:27715971-27715990 None:intergenic 20.0%
! AATATGAACGGTTTATTCTT+AGG - chr8.1:27715959-27715978 None:intergenic 25.0%
! ATATGAACGGTTTATTCTTA+GGG - chr8.1:27715958-27715977 None:intergenic 25.0%
AAACACTATGAGAAAACCAT+GGG + chr8.1:27716158-27716177 MS.gene28603:CDS 30.0%
AAAGCAATTAATCGCATTTG+AGG + chr8.1:27716055-27716074 MS.gene28603:CDS 30.0%
GTGATTGAATGAGGAAAATT+TGG - chr8.1:27716017-27716036 None:intergenic 30.0%
TATTCTTAGGGATTCTATGA+GGG - chr8.1:27715946-27715965 None:intergenic 30.0%
TCAAATGCGATTAATTGCTT+TGG - chr8.1:27716056-27716075 None:intergenic 30.0%
TTATTCTTAGGGATTCTATG+AGG - chr8.1:27715947-27715966 None:intergenic 30.0%
TTTGGTAAAGAAATGAGCAT+TGG - chr8.1:27715631-27715650 None:intergenic 30.0%
!! TTTTGAAGAGAAATCCATGA+GGG + chr8.1:27716226-27716245 MS.gene28603:CDS 30.0%
AACAACTTTGCTGAACTTGA+TGG + chr8.1:27716122-27716141 MS.gene28603:CDS 35.0%
AATGCGATTAATTGCTTTGG+TGG - chr8.1:27716053-27716072 None:intergenic 35.0%
ATATGACCAGGTGATAGAAA+TGG - chr8.1:27715537-27715556 None:intergenic 35.0%
CAAACACTATGAGAAAACCA+TGG + chr8.1:27716157-27716176 MS.gene28603:CDS 35.0%
TATGAGGGATACTGTAAAGA+GGG - chr8.1:27715931-27715950 None:intergenic 35.0%
TTCTCCACGAATTCTCTAAT+GGG - chr8.1:27715810-27715829 None:intergenic 35.0%
TTTGAAGAGAAATCCATGAG+GGG + chr8.1:27716227-27716246 MS.gene28603:CDS 35.0%
!! CTTTTGAAGAGAAATCCATG+AGG + chr8.1:27716225-27716244 MS.gene28603:CDS 35.0%
!! GTAAAGAAATGAGCATTGGA+GGG - chr8.1:27715627-27715646 None:intergenic 35.0%
AAAATGGGGTTGGAGTTGAA+CGG + chr8.1:27715490-27715509 MS.gene28603:CDS 40.0%
ACCTGGTCATATGATTCCTT+TGG + chr8.1:27715545-27715564 MS.gene28603:CDS 40.0%
ATACCCTTGGATCAATGACT+TGG + chr8.1:27715863-27715882 MS.gene28603:CDS 40.0%
ATGCTTCCATTTCTATCACC+TGG + chr8.1:27715528-27715547 MS.gene28603:CDS 40.0%
CATTAGAGAATTCGTGGAGA+AGG + chr8.1:27715809-27715828 MS.gene28603:CDS 40.0%
CCTGGTCATATGATTCCTTT+GGG + chr8.1:27715546-27715565 MS.gene28603:CDS 40.0%
CTATGAGGGATACTGTAAAG+AGG - chr8.1:27715932-27715951 None:intergenic 40.0%
CTTCTCCACGAATTCTCTAA+TGG - chr8.1:27715811-27715830 None:intergenic 40.0%
GAGACAATCCGCAAAAGTAA+GGG + chr8.1:27716089-27716108 MS.gene28603:CDS 40.0%
GAGCAAAAGGTGATTGAATG+AGG - chr8.1:27716026-27716045 None:intergenic 40.0%
TACTGTAAAGAGGGAGAATC+CGG - chr8.1:27715922-27715941 None:intergenic 40.0%
TGAACCCATTAGAGAATTCG+TGG + chr8.1:27715803-27715822 MS.gene28603:CDS 40.0%
TGAGACAATCCGCAAAAGTA+AGG + chr8.1:27716088-27716107 MS.gene28603:CDS 40.0%
! GGAAGCATGTGAAGTTTCAA+TGG - chr8.1:27715516-27715535 None:intergenic 40.0%
! GTTTTGCGAATAAGACAAGC+TGG - chr8.1:27716206-27716225 None:intergenic 40.0%
! TGAGAAAACCATGGGTTACA+AGG + chr8.1:27716166-27716185 MS.gene28603:CDS 40.0%
!! GGTAAAGAAATGAGCATTGG+AGG - chr8.1:27715628-27715647 None:intergenic 40.0%
ACCATGGGCAAGATATGCAA+AGG + chr8.1:27715765-27715784 MS.gene28603:CDS 45.0%
ACCTTTGCATATCTTGCCCA+TGG - chr8.1:27715769-27715788 None:intergenic 45.0%
ATCGATGGAGGAGAGAGATT+TGG - chr8.1:27715649-27715668 None:intergenic 45.0%
CCCAAAGGAATCATATGACC+AGG - chr8.1:27715549-27715568 None:intergenic 45.0%
GGTGGAGATATGAGGCTTAT+TGG - chr8.1:27715889-27715908 None:intergenic 45.0%
TGGCCAAGTCATTGATCCAA+GGG - chr8.1:27715869-27715888 None:intergenic 45.0%
TTGGCCAAGTCATTGATCCA+AGG - chr8.1:27715870-27715889 None:intergenic 45.0%
TTTGCATATCTTGCCCATGG+TGG - chr8.1:27715766-27715785 None:intergenic 45.0%
! AAACCATGGGTTACAAGGCT+TGG + chr8.1:27716171-27716190 MS.gene28603:CDS 45.0%
! AAGGCAATGGTGGAGATATG+AGG - chr8.1:27715897-27715916 None:intergenic 45.0%
! GATCCAAGGGTATACACAGT+CGG - chr8.1:27715856-27715875 None:intergenic 45.0%
! TGGTGATGATCGTGACTTGT+TGG - chr8.1:27715602-27715621 None:intergenic 45.0%
!! CGATGAGTCCCTTACTTTTG+CGG - chr8.1:27716100-27716119 None:intergenic 45.0%
!! CTTTGGTGGTGTTGAGCAAA+AGG - chr8.1:27716039-27716058 None:intergenic 45.0%
AAAGAGGGAGAATCCGGTGA+AGG - chr8.1:27715916-27715935 None:intergenic 50.0%
AGAGCTGCTATGTCACCCAA+AGG - chr8.1:27715564-27715583 None:intergenic 50.0%
AGGGAAAGTCGATGGTGTGA+AGG - chr8.1:27715686-27715705 None:intergenic 50.0%
ATATCTTGCCCATGGTGGCA+GGG - chr8.1:27715761-27715780 None:intergenic 50.0%
ATCTCCACCATTGCCTTCAC+CGG + chr8.1:27715900-27715919 MS.gene28603:CDS 50.0%
ATGATTCAACGCCGTCAGGA+AGG - chr8.1:27715722-27715741 None:intergenic 50.0%
CAGTCGGCAATGATGTAGTC+AGG - chr8.1:27715840-27715859 None:intergenic 50.0%
GAAAGTCGATGGTGTGAAGG+CGG - chr8.1:27715683-27715702 None:intergenic 50.0%
GACAATGATTCAACGCCGTC+AGG - chr8.1:27715726-27715745 None:intergenic 50.0%
GAGGAAAAACGGATCGATGG+AGG - chr8.1:27715661-27715680 None:intergenic 50.0%
GGTTACAAGGCTTGGCATCT+TGG + chr8.1:27716179-27716198 MS.gene28603:CDS 50.0%
GTGTGAAGGCGGAGGAAAAA+CGG - chr8.1:27715672-27715691 None:intergenic 50.0%
! ATGCCAAGCCTTGTAACCCA+TGG - chr8.1:27716177-27716196 None:intergenic 50.0%
! TTGCCGACTGTGTATACCCT+TGG + chr8.1:27715850-27715869 MS.gene28603:CDS 50.0%
!! GAAATGAGCATTGGAGGGAG+TGG - chr8.1:27715622-27715641 None:intergenic 50.0%
!! GATCGTGACTTGTTGGCCAT+GGG - chr8.1:27715595-27715614 None:intergenic 50.0%
!! TGATCGTGACTTGTTGGCCA+TGG - chr8.1:27715596-27715615 None:intergenic 50.0%
CAGCAAGTCGACCTTCCTGA+CGG + chr8.1:27715708-27715727 MS.gene28603:CDS 55.0%
CATATCTTGCCCATGGTGGC+AGG - chr8.1:27715762-27715781 None:intergenic 55.0%
CTCGCTCTCATTTCCCCTCA+TGG - chr8.1:27716243-27716262 None:intergenic 55.0%
GAATCCGGTGAAGGCAATGG+TGG - chr8.1:27715907-27715926 None:intergenic 55.0%
GCAGCTCTGTTTGCATCCCA+TGG + chr8.1:27715576-27715595 MS.gene28603:CDS 55.0%
GCGGAGGAAAAACGGATCGA+TGG - chr8.1:27715664-27715683 None:intergenic 55.0%
GGAGAATCCGGTGAAGGCAA+TGG - chr8.1:27715910-27715929 None:intergenic 55.0%
TTGCTGGGAGGGAAAGTCGA+TGG - chr8.1:27715694-27715713 None:intergenic 55.0%
!! GTCAGGAAGGTCGACTTGCT+GGG - chr8.1:27715709-27715728 None:intergenic 55.0%
ACCACTGACCCTGCCACCAT+GGG + chr8.1:27715750-27715769 MS.gene28603:CDS 60.0%
AGTCGATGGTGTGAAGGCGG+AGG - chr8.1:27715680-27715699 None:intergenic 60.0%
!! AGGAAGGTCGACTTGCTGGG+AGG - chr8.1:27715706-27715725 None:intergenic 60.0%
!! CGTCAGGAAGGTCGACTTGC+TGG - chr8.1:27715710-27715729 None:intergenic 60.0%
!! GGAAGGTCGACTTGCTGGGA+GGG - chr8.1:27715705-27715724 None:intergenic 60.0%
CACCACTGACCCTGCCACCA+TGG + chr8.1:27715749-27715768 MS.gene28603:CDS 65.0%
CATGGTGGCAGGGTCAGTGG+TGG - chr8.1:27715751-27715770 None:intergenic 65.0%
GCCCATGGTGGCAGGGTCAG+TGG - chr8.1:27715754-27715773 None:intergenic 70.0%
GGTGGCAGGGTCAGTGGTGG+AGG - chr8.1:27715748-27715767 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 27715486 27716262 27715486 ID=MS.gene28603
chr8.1 mRNA 27715486 27716262 27715486 ID=MS.gene28603.t1;Parent=MS.gene28603
chr8.1 exon 27715486 27716262 27715486 ID=MS.gene28603.t1.exon1;Parent=MS.gene28603.t1
chr8.1 CDS 27715486 27716262 27715486 ID=cds.MS.gene28603.t1;Parent=MS.gene28603.t1
Gene Sequence

>MS.gene28603

ATGGAAAATGGGGTTGGAGTTGAACGGCCATTGAAACTTCACATGCTTCCATTTCTATCACCTGGTCATATGATTCCTTTGGGTGACATAGCAGCTCTGTTTGCATCCCATGGCCAACAAGTCACGATCATCACCACTCCCTCCAATGCTCATTTCTTTACCAAATCTCTCTCCTCCATCGATCCGTTTTTCCTCCGCCTTCACACCATCGACTTTCCCTCCCAGCAAGTCGACCTTCCTGACGGCGTTGAATCATTGTCCTCCACCACTGACCCTGCCACCATGGGCAAGATATGCAAAGGTGCAATGCTCTTGCATGAACCCATTAGAGAATTCGTGGAGAAGGAACAACCTGACTACATCATTGCCGACTGTGTATACCCTTGGATCAATGACTTGGCCAATAAGCCTCATATCTCCACCATTGCCTTCACCGGATTCTCCCTCTTTACAGTATCCCTCATAGAATCCCTAAGAATAAACCGTTCATATTTTGACAAGAATTCGAGTTTGAGTTCGTTCGTTGATCCAAATTTTCCTCATTCAATCACCTTTTGCTCAACACCACCAAAGCAATTAATCGCATTTGAGGAAAGAATGCTTGAGACAATCCGCAAAAGTAAGGGACTCATCGTTAACAACTTTGCTGAACTTGATGGTGATGATTGCATCAAACACTATGAGAAAACCATGGGTTACAAGGCTTGGCATCTTGGTCCAGCTTGTCTTATTCGCAAAACTTTTGAAGAGAAATCCATGAGGGGAAATGAGAGCGAG
Protein sequence

>MS.gene28603.t1

MENGVGVERPLKLHMLPFLSPGHMIPLGDIAALFASHGQQVTIITTPSNAHFFTKSLSSIDPFFLRLHTIDFPSQQVDLPDGVESLSSTTDPATMGKICKGAMLLHEPIREFVEKEQPDYIIADCVYPWINDLANKPHISTIAFTGFSLFTVSLIESLRINRSYFDKNSSLSSFVDPNFPHSITFCSTPPKQLIAFEERMLETIRKSKGLIVNNFAELDGDDCIKHYEKTMGYKAWHLGPACLIRKTFEEKSMRGNESE