Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28619.t1 | XP_003626098.1 | 99.2 | 242 | 2 | 0 | 1 | 242 | 13 | 254 | 2.70E-141 | 511.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28619.t1 | Q9ZSI1 | 81.8 | 231 | 42 | 0 | 12 | 242 | 25 | 255 | 2.9e-115 | 416.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28619.t1 | G7KVH3 | 99.2 | 242 | 2 | 0 | 1 | 242 | 13 | 254 | 2.0e-141 | 511.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050720 | MS.gene28619 | 0.872991 | 2.08E-67 | -1.69E-46 |
| MS.gene050722 | MS.gene28619 | 0.870685 | 1.21E-66 | -1.69E-46 |
| MS.gene050723 | MS.gene28619 | 0.887471 | 1.39E-72 | -1.69E-46 |
| MS.gene050725 | MS.gene28619 | 0.86137 | 1.08E-63 | -1.69E-46 |
| MS.gene050726 | MS.gene28619 | 0.868906 | 4.61E-66 | -1.69E-46 |
| MS.gene050822 | MS.gene28619 | 0.956267 | 4.41E-114 | -1.69E-46 |
| MS.gene050823 | MS.gene28619 | 0.862938 | 3.56E-64 | -1.69E-46 |
| MS.gene053403 | MS.gene28619 | 0.805857 | 1.09E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene28619 | 0.802895 | 4.52E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene28619 | 0.82258 | 2.20E-53 | -1.69E-46 |
| MS.gene059891 | MS.gene28619 | 0.801764 | 7.72E-49 | -1.69E-46 |
| MS.gene059892 | MS.gene28619 | 0.821119 | 4.78E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28619.t1 | MTR_7g111010 | 99.174 | 242 | 2 | 0 | 1 | 242 | 13 | 254 | 0.0 | 500 |
| MS.gene28619.t1 | MTR_7g110990 | 96.234 | 239 | 9 | 0 | 4 | 242 | 1 | 239 | 2.94e-173 | 476 |
| MS.gene28619.t1 | MTR_1g085460 | 85.833 | 240 | 34 | 0 | 3 | 242 | 18 | 257 | 1.50e-158 | 440 |
| MS.gene28619.t1 | MTR_1g026020 | 66.379 | 232 | 77 | 1 | 11 | 242 | 25 | 255 | 2.92e-118 | 338 |
| MS.gene28619.t1 | MTR_5g075320 | 64.126 | 223 | 76 | 3 | 15 | 237 | 29 | 247 | 1.61e-105 | 305 |
| MS.gene28619.t1 | MTR_7g061720 | 63.677 | 223 | 77 | 3 | 15 | 236 | 32 | 251 | 7.53e-105 | 304 |
| MS.gene28619.t1 | MTR_3g094040 | 64.865 | 222 | 74 | 3 | 15 | 236 | 31 | 248 | 1.11e-104 | 303 |
| MS.gene28619.t1 | MTR_3g094060 | 64.865 | 222 | 74 | 3 | 15 | 236 | 31 | 248 | 1.16e-104 | 303 |
| MS.gene28619.t1 | MTR_2g097030 | 64.574 | 223 | 75 | 3 | 15 | 236 | 34 | 253 | 1.81e-104 | 303 |
| MS.gene28619.t1 | MTR_5g041700 | 65.766 | 222 | 72 | 3 | 15 | 236 | 25 | 242 | 3.29e-104 | 302 |
| MS.gene28619.t1 | MTR_3g435430 | 64.474 | 228 | 76 | 4 | 15 | 242 | 25 | 247 | 6.20e-104 | 301 |
| MS.gene28619.t1 | MTR_5g079950 | 64.286 | 224 | 76 | 3 | 14 | 236 | 32 | 252 | 1.76e-103 | 300 |
| MS.gene28619.t1 | MTR_4g081950 | 65.315 | 222 | 73 | 3 | 15 | 236 | 61 | 278 | 2.36e-103 | 301 |
| MS.gene28619.t1 | MTR_7g011060 | 64.035 | 228 | 70 | 4 | 9 | 236 | 20 | 235 | 1.65e-100 | 292 |
| MS.gene28619.t1 | MTR_3g466790 | 61.181 | 237 | 88 | 3 | 1 | 237 | 18 | 250 | 4.95e-100 | 291 |
| MS.gene28619.t1 | MTR_3g466760 | 60.759 | 237 | 89 | 3 | 1 | 237 | 24 | 256 | 4.07e-98 | 287 |
| MS.gene28619.t1 | MTR_4g063975 | 62.332 | 223 | 80 | 3 | 15 | 236 | 32 | 251 | 2.98e-96 | 282 |
| MS.gene28619.t1 | MTR_6g012520 | 64.414 | 222 | 67 | 4 | 15 | 236 | 28 | 237 | 1.52e-91 | 270 |
| MS.gene28619.t1 | MTR_5g011210 | 55.217 | 230 | 97 | 4 | 15 | 242 | 37 | 262 | 1.47e-86 | 258 |
| MS.gene28619.t1 | MTR_4g102450 | 55.459 | 229 | 98 | 3 | 15 | 242 | 36 | 261 | 9.69e-86 | 256 |
| MS.gene28619.t1 | MTR_7g013120 | 51.965 | 229 | 105 | 3 | 15 | 242 | 29 | 253 | 5.68e-85 | 253 |
| MS.gene28619.t1 | MTR_7g013140 | 51.852 | 243 | 111 | 4 | 1 | 242 | 14 | 251 | 5.04e-84 | 251 |
| MS.gene28619.t1 | MTR_4g124340 | 50.673 | 223 | 105 | 3 | 15 | 236 | 61 | 279 | 6.25e-84 | 252 |
| MS.gene28619.t1 | MTR_7g013150 | 53.275 | 229 | 101 | 4 | 15 | 242 | 30 | 253 | 2.50e-83 | 249 |
| MS.gene28619.t1 | MTR_8g464350 | 51.965 | 229 | 104 | 4 | 15 | 242 | 31 | 254 | 1.90e-81 | 244 |
| MS.gene28619.t1 | MTR_8g058990 | 50.218 | 229 | 108 | 4 | 15 | 242 | 30 | 253 | 6.47e-78 | 235 |
| MS.gene28619.t1 | MTR_0040s0140 | 50.446 | 224 | 107 | 3 | 15 | 237 | 32 | 252 | 5.94e-76 | 230 |
| MS.gene28619.t1 | MTR_2g090255 | 49.107 | 224 | 110 | 3 | 15 | 237 | 28 | 248 | 3.23e-73 | 223 |
| MS.gene28619.t1 | MTR_5g076950 | 48.444 | 225 | 109 | 3 | 15 | 237 | 41 | 260 | 7.96e-72 | 220 |
| MS.gene28619.t1 | MTR_3g064510 | 46.725 | 229 | 115 | 5 | 15 | 237 | 53 | 280 | 5.92e-68 | 211 |
| MS.gene28619.t1 | MTR_6g012500 | 58.333 | 96 | 39 | 1 | 141 | 236 | 181 | 275 | 3.69e-32 | 119 |
| MS.gene28619.t1 | MTR_0008s0120 | 33.333 | 228 | 92 | 6 | 15 | 242 | 32 | 199 | 9.07e-31 | 113 |
| MS.gene28619.t1 | MTR_2g090270 | 30.962 | 239 | 139 | 8 | 15 | 242 | 35 | 258 | 2.36e-30 | 114 |
| MS.gene28619.t1 | MTR_2g090265 | 31.799 | 239 | 137 | 9 | 15 | 242 | 33 | 256 | 8.50e-29 | 109 |
| MS.gene28619.t1 | MTR_0122s0020 | 31.381 | 239 | 138 | 9 | 15 | 242 | 41 | 264 | 4.41e-26 | 102 |
| MS.gene28619.t1 | MTR_1g085365 | 81.818 | 55 | 10 | 0 | 186 | 240 | 4 | 58 | 5.20e-26 | 96.7 |
| MS.gene28619.t1 | MTR_0118s0070 | 33.195 | 241 | 125 | 11 | 20 | 242 | 53 | 275 | 1.25e-25 | 101 |
| MS.gene28619.t1 | MTR_4g028640 | 31.765 | 255 | 135 | 12 | 5 | 242 | 32 | 264 | 2.67e-24 | 97.8 |
| MS.gene28619.t1 | MTR_0809s0010 | 30.041 | 243 | 128 | 12 | 15 | 238 | 47 | 266 | 2.83e-21 | 90.1 |
| MS.gene28619.t1 | MTR_4g099370 | 27.600 | 250 | 156 | 10 | 3 | 242 | 16 | 250 | 1.08e-19 | 85.5 |
| MS.gene28619.t1 | MTR_5g013440 | 27.039 | 233 | 149 | 9 | 18 | 242 | 32 | 251 | 4.00e-19 | 84.0 |
| MS.gene28619.t1 | MTR_4g075790 | 31.224 | 237 | 136 | 11 | 16 | 242 | 24 | 243 | 1.32e-18 | 82.4 |
| MS.gene28619.t1 | MTR_4g098930 | 29.362 | 235 | 142 | 10 | 17 | 241 | 31 | 251 | 1.42e-15 | 73.9 |
| MS.gene28619.t1 | MTR_0122s0020 | 32.386 | 176 | 93 | 10 | 15 | 179 | 41 | 201 | 6.43e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28619.t1 | AT4G01630 | 79.167 | 240 | 50 | 0 | 3 | 242 | 16 | 255 | 2.81e-146 | 409 |
| MS.gene28619.t1 | AT1G20190 | 67.857 | 224 | 71 | 1 | 19 | 242 | 30 | 252 | 2.31e-112 | 323 |
| MS.gene28619.t1 | AT2G40610 | 65.022 | 223 | 75 | 2 | 15 | 237 | 30 | 249 | 5.90e-107 | 309 |
| MS.gene28619.t1 | AT5G05290 | 61.435 | 223 | 83 | 2 | 15 | 237 | 32 | 251 | 7.08e-106 | 306 |
| MS.gene28619.t1 | AT1G69530 | 64.865 | 222 | 74 | 3 | 15 | 236 | 27 | 244 | 6.55e-103 | 299 |
| MS.gene28619.t1 | AT1G69530 | 64.865 | 222 | 74 | 3 | 15 | 236 | 27 | 244 | 6.55e-103 | 299 |
| MS.gene28619.t1 | AT1G69530 | 64.865 | 222 | 74 | 3 | 15 | 236 | 27 | 244 | 6.86e-103 | 300 |
| MS.gene28619.t1 | AT3G55500 | 63.229 | 223 | 78 | 3 | 15 | 236 | 34 | 253 | 4.68e-102 | 297 |
| MS.gene28619.t1 | AT2G03090 | 62.500 | 224 | 80 | 3 | 13 | 236 | 28 | 247 | 5.13e-102 | 296 |
| MS.gene28619.t1 | AT2G39700 | 62.946 | 224 | 79 | 3 | 14 | 236 | 30 | 250 | 1.98e-101 | 295 |
| MS.gene28619.t1 | AT5G02260 | 62.332 | 223 | 80 | 3 | 15 | 236 | 32 | 251 | 8.02e-101 | 294 |
| MS.gene28619.t1 | AT2G28950 | 62.780 | 223 | 79 | 3 | 15 | 236 | 31 | 250 | 1.78e-100 | 293 |
| MS.gene28619.t1 | AT2G37640 | 62.500 | 224 | 80 | 3 | 15 | 237 | 36 | 256 | 1.89e-100 | 293 |
| MS.gene28619.t1 | AT5G56320 | 58.898 | 236 | 93 | 3 | 1 | 236 | 15 | 246 | 6.38e-100 | 291 |
| MS.gene28619.t1 | AT5G56320 | 58.898 | 236 | 93 | 3 | 1 | 236 | 15 | 246 | 6.38e-100 | 291 |
| MS.gene28619.t1 | AT5G56320 | 58.898 | 236 | 93 | 3 | 1 | 236 | 15 | 246 | 3.88e-99 | 291 |
| MS.gene28619.t1 | AT3G29030 | 60.360 | 222 | 77 | 3 | 15 | 236 | 38 | 248 | 1.70e-97 | 285 |
| MS.gene28619.t1 | AT1G26770 | 63.964 | 222 | 76 | 3 | 15 | 236 | 26 | 243 | 8.24e-94 | 276 |
| MS.gene28619.t1 | AT1G26770 | 63.964 | 222 | 76 | 3 | 15 | 236 | 36 | 253 | 1.02e-93 | 276 |
| MS.gene28619.t1 | AT1G20190 | 65.285 | 193 | 66 | 1 | 50 | 242 | 2 | 193 | 1.60e-91 | 268 |
| MS.gene28619.t1 | AT3G15370 | 56.000 | 225 | 93 | 2 | 15 | 238 | 27 | 246 | 1.57e-89 | 265 |
| MS.gene28619.t1 | AT1G69530 | 63.547 | 203 | 68 | 4 | 15 | 217 | 27 | 223 | 8.13e-89 | 263 |
| MS.gene28619.t1 | AT1G69530 | 65.641 | 195 | 61 | 4 | 15 | 209 | 27 | 215 | 1.28e-88 | 261 |
| MS.gene28619.t1 | AT2G37640 | 59.709 | 206 | 79 | 3 | 32 | 236 | 28 | 230 | 4.87e-87 | 258 |
| MS.gene28619.t1 | AT1G12560 | 54.585 | 229 | 99 | 4 | 15 | 242 | 37 | 261 | 1.57e-85 | 255 |
| MS.gene28619.t1 | AT3G15370 | 49.412 | 255 | 93 | 3 | 15 | 238 | 27 | 276 | 7.61e-83 | 249 |
| MS.gene28619.t1 | AT5G39270 | 51.754 | 228 | 104 | 4 | 15 | 242 | 58 | 279 | 6.94e-81 | 244 |
| MS.gene28619.t1 | AT5G39310 | 49.787 | 235 | 111 | 5 | 9 | 242 | 84 | 312 | 2.09e-79 | 241 |
| MS.gene28619.t1 | AT5G39300 | 50.439 | 228 | 107 | 4 | 15 | 242 | 55 | 276 | 2.11e-79 | 240 |
| MS.gene28619.t1 | AT5G39290 | 51.316 | 228 | 105 | 4 | 15 | 242 | 58 | 279 | 2.64e-79 | 240 |
| MS.gene28619.t1 | AT1G62980 | 49.388 | 245 | 117 | 6 | 1 | 242 | 16 | 256 | 4.44e-79 | 238 |
| MS.gene28619.t1 | AT5G39280 | 50.000 | 228 | 108 | 4 | 15 | 242 | 54 | 275 | 7.45e-79 | 239 |
| MS.gene28619.t1 | AT3G03220 | 45.333 | 225 | 116 | 3 | 15 | 237 | 40 | 259 | 9.47e-69 | 213 |
| MS.gene28619.t1 | AT4G38210 | 48.673 | 226 | 110 | 4 | 15 | 237 | 28 | 250 | 1.36e-68 | 212 |
| MS.gene28619.t1 | AT5G39260 | 45.852 | 229 | 112 | 5 | 15 | 242 | 45 | 262 | 2.00e-62 | 196 |
| MS.gene28619.t1 | AT2G20750 | 33.333 | 246 | 140 | 8 | 9 | 242 | 34 | 267 | 4.85e-31 | 115 |
| MS.gene28619.t1 | AT4G28250 | 30.556 | 252 | 148 | 8 | 3 | 242 | 24 | 260 | 5.77e-31 | 115 |
| MS.gene28619.t1 | AT1G65680 | 34.711 | 242 | 129 | 11 | 15 | 242 | 47 | 273 | 1.26e-29 | 112 |
| MS.gene28619.t1 | AT4G28250 | 29.482 | 251 | 146 | 8 | 3 | 242 | 24 | 254 | 1.22e-27 | 106 |
| MS.gene28619.t1 | AT2G45110 | 34.156 | 243 | 123 | 11 | 18 | 242 | 36 | 259 | 1.43e-24 | 98.6 |
| MS.gene28619.t1 | AT1G65681 | 31.004 | 229 | 125 | 11 | 29 | 242 | 12 | 222 | 2.92e-21 | 89.0 |
| MS.gene28619.t1 | AT2G20750 | 33.516 | 182 | 98 | 7 | 9 | 179 | 34 | 203 | 2.45e-19 | 83.6 |
| MS.gene28619.t1 | AT4G28250 | 28.646 | 192 | 107 | 7 | 3 | 184 | 24 | 195 | 7.25e-17 | 77.0 |
| MS.gene28619.t1 | AT4G28250 | 28.877 | 187 | 103 | 7 | 3 | 179 | 24 | 190 | 3.33e-16 | 75.1 |
| MS.gene28619.t1 | AT3G60570 | 29.098 | 244 | 137 | 10 | 15 | 242 | 34 | 257 | 1.03e-15 | 74.7 |
| MS.gene28619.t1 | AT4G17030 | 25.714 | 245 | 163 | 8 | 3 | 240 | 15 | 247 | 1.80e-15 | 73.9 |
| MS.gene28619.t1 | AT4G38400 | 27.354 | 223 | 123 | 9 | 38 | 242 | 47 | 248 | 4.44e-15 | 73.2 |
| MS.gene28619.t1 | AT3G45970 | 28.696 | 230 | 122 | 11 | 33 | 242 | 14 | 221 | 2.05e-14 | 70.9 |
| MS.gene28619.t1 | AT3G45960 | 27.778 | 216 | 131 | 10 | 38 | 242 | 46 | 247 | 9.85e-13 | 66.2 |
| MS.gene28619.t1 | AT3G45970 | 28.000 | 225 | 120 | 11 | 38 | 242 | 46 | 248 | 8.38e-12 | 63.9 |
| MS.gene28619.t1 | AT3G60570 | 28.319 | 226 | 126 | 10 | 33 | 242 | 4 | 209 | 1.29e-11 | 62.8 |
Find 0 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAAGATTTACTATAAA+TGG | + | 50573:14852-14871 | MS.gene28619:CDS | 15.0% |
| !! | ACATAAGATTTACTATAAAT+GGG | + | 50573:14853-14872 | MS.gene28619:CDS | 15.0% |
| !! | AAGGATCAAAAAAGAATAAA+TGG | + | 50573:14946-14965 | MS.gene28619:CDS | 20.0% |
| !! | AGGATCAAAAAAGAATAAAT+GGG | + | 50573:14947-14966 | MS.gene28619:CDS | 20.0% |
| !! | TTAGAATTCAACTCAAAAAT+GGG | + | 50573:15039-15058 | MS.gene28619:CDS | 20.0% |
| !!! | AAGATTTAATTGTCATTTAG+CGG | - | 50573:14770-14789 | None:intergenic | 20.0% |
| !!! | ATTTCTAAAGTTTGGATAAA+AGG | + | 50573:14927-14946 | MS.gene28619:CDS | 20.0% |
| !!! | CTTAATTTTGATTAACTTGT+AGG | + | 50573:14331-14350 | MS.gene28619:intron | 20.0% |
| !!! | TTTAGAATTCAACTCAAAAA+TGG | + | 50573:15038-15057 | MS.gene28619:CDS | 20.0% |
| ! | AATATACCTCCTATACAAAA+TGG | - | 50573:14662-14681 | None:intergenic | 25.0% |
| ! | ATATACCTCCTATACAAAAT+GGG | - | 50573:14661-14680 | None:intergenic | 25.0% |
| !!! | AATTTTGATTAACTTGTAGG+TGG | + | 50573:14334-14353 | MS.gene28619:intron | 25.0% |
| AATCTATACACAGATGGATA+TGG | + | 50573:14373-14392 | MS.gene28619:CDS | 30.0% | |
| TATGGAAATCTATACACAGA+TGG | + | 50573:14367-14386 | MS.gene28619:CDS | 30.0% | |
| TGTTGTATTTATGCAGAGTT+GGG | + | 50573:14814-14833 | MS.gene28619:intron | 30.0% | |
| TTGTTGTATTTATGCAGAGT+TGG | + | 50573:14813-14832 | MS.gene28619:intron | 30.0% | |
| ! | AAGAATTTGACTTTGTCGTA+GGG | - | 50573:14696-14715 | None:intergenic | 30.0% |
| ! | GAATTGTTCCCATTTTGTAT+AGG | + | 50573:14650-14669 | MS.gene28619:CDS | 30.0% |
| ! | TAAGAATTTGACTTTGTCGT+AGG | - | 50573:14697-14716 | None:intergenic | 30.0% |
| ACATATCAAAGTGAGGTCTA+GGG | - | 50573:14591-14610 | None:intergenic | 35.0% | |
| AGTACTGCTCTCTTTAATGA+TGG | + | 50573:14415-14434 | MS.gene28619:CDS | 35.0% | |
| ATTTGTGGCAGTAATAGTGA+TGG | - | 50573:14515-14534 | None:intergenic | 35.0% | |
| GAACCAATGTCAATGAATTG+GGG | + | 50573:14969-14988 | MS.gene28619:CDS | 35.0% | |
| GGAACCAATGTCAATGAATT+GGG | + | 50573:14968-14987 | MS.gene28619:CDS | 35.0% | |
| GTACTGCTCTCTTTAATGAT+GGG | + | 50573:14416-14435 | MS.gene28619:CDS | 35.0% | |
| GTACTTAGCTATAGTCTGAA+AGG | - | 50573:14623-14642 | None:intergenic | 35.0% | |
| TTTGACCATTGAGATAGCTT+AGG | - | 50573:15010-15029 | None:intergenic | 35.0% | |
| ! | GTTTGGTGGACAAAAATTTG+TGG | - | 50573:14530-14549 | None:intergenic | 35.0% |
| ! | TTGGTGCTTATAAGCAATGT+AGG | + | 50573:14891-14910 | MS.gene28619:CDS | 35.0% |
| ! | TTGTTCCCATTTTGTATAGG+AGG | + | 50573:14653-14672 | MS.gene28619:CDS | 35.0% |
| ! | TTTAATGATGGGAAGTCATG+TGG | + | 50573:14427-14446 | MS.gene28619:CDS | 35.0% |
| !! | GTGGAGAGATTTCTAAAGTT+TGG | + | 50573:14919-14938 | MS.gene28619:CDS | 35.0% |
| !! | TGGGAGAGACTATTTTGAAT+TGG | + | 50573:14872-14891 | MS.gene28619:CDS | 35.0% |
| !!! | GAACGTTACTTTTGTAAGAC+TGG | - | 50573:15112-15131 | None:intergenic | 35.0% |
| ACCAACCACCATTGTCATTA+GGG | - | 50573:14561-14580 | None:intergenic | 40.0% | |
| ACTATAGCTAAGTACAGAGC+TGG | + | 50573:14628-14647 | MS.gene28619:CDS | 40.0% | |
| ATATCAAAGTGAGGTCTAGG+GGG | - | 50573:14589-14608 | None:intergenic | 40.0% | |
| CAAAGCCTAAGCTATCTCAA+TGG | + | 50573:15002-15021 | MS.gene28619:CDS | 40.0% | |
| CAAATTACCCATTGTTCCTG+AGG | - | 50573:14233-14252 | None:intergenic | 40.0% | |
| CAAGCTCATGCAACTTTCTA+TGG | + | 50573:14196-14215 | MS.gene28619:CDS | 40.0% | |
| CATATCAAAGTGAGGTCTAG+GGG | - | 50573:14590-14609 | None:intergenic | 40.0% | |
| CTTATAAGCAATGTAGGTGG+AGG | + | 50573:14897-14916 | MS.gene28619:CDS | 40.0% | |
| GACATATCAAAGTGAGGTCT+AGG | - | 50573:14592-14611 | None:intergenic | 40.0% | |
| GGGAACCAATGTCAATGAAT+TGG | + | 50573:14967-14986 | MS.gene28619:CDS | 40.0% | |
| GGTTGAGACATATCAAAGTG+AGG | - | 50573:14598-14617 | None:intergenic | 40.0% | |
| GTGCTTATAAGCAATGTAGG+TGG | + | 50573:14894-14913 | MS.gene28619:CDS | 40.0% | |
| TCAATGTTGCACCTTCCAAT+TGG | + | 50573:15078-15097 | MS.gene28619:CDS | 40.0% | |
| TCAGAGTAGAATCTGCTGTT+TGG | + | 50573:14170-14189 | MS.gene28619:CDS | 40.0% | |
| TTAGCTATAGTCTGAAAGGC+AGG | - | 50573:14619-14638 | None:intergenic | 40.0% | |
| TTTGCACTCCCTAATGACAA+TGG | + | 50573:14550-14569 | MS.gene28619:CDS | 40.0% | |
| ! | ATCAGATAGTTTGTGACGCA+AGG | + | 50573:14458-14477 | MS.gene28619:CDS | 40.0% |
| ! | CAATGAATTGGGGTGCTAAT+TGG | + | 50573:14979-14998 | MS.gene28619:CDS | 40.0% |
| ! | TCATTAGGGAGTGCAAAGTT+TGG | - | 50573:14547-14566 | None:intergenic | 40.0% |
| AACTTGTAGGTGGTGCATGT+GGG | + | 50573:14344-14363 | MS.gene28619:intron | 45.0% | |
| AAGTGATGCCTCAGGAACAA+TGG | + | 50573:14222-14241 | MS.gene28619:CDS | 45.0% | |
| AGAGTTGGGTGCAAAAGAAG+TGG | + | 50573:14828-14847 | MS.gene28619:intron | 45.0% | |
| AGTGATGCCTCAGGAACAAT+GGG | + | 50573:14223-14242 | MS.gene28619:CDS | 45.0% | |
| ATAAGCAATGTAGGTGGAGG+TGG | + | 50573:14900-14919 | MS.gene28619:CDS | 45.0% | |
| CACCAACCACCATTGTCATT+AGG | - | 50573:14562-14581 | None:intergenic | 45.0% | |
| GCACCCCAATTCATTGACAT+TGG | - | 50573:14975-14994 | None:intergenic | 45.0% | |
| GCACCTTCCAATTGGAGATT+TGG | + | 50573:15086-15105 | MS.gene28619:CDS | 45.0% | |
| GCTCATGCAACTTTCTATGG+TGG | + | 50573:14199-14218 | MS.gene28619:CDS | 45.0% | |
| TCCCTAATGACAATGGTGGT+TGG | + | 50573:14557-14576 | MS.gene28619:CDS | 45.0% | |
| TGGCCAAATCTCCAATTGGA+AGG | - | 50573:15092-15111 | None:intergenic | 45.0% | |
| ! | AATGATGGGAAGTCATGTGG+TGG | + | 50573:14430-14449 | MS.gene28619:CDS | 45.0% |
| ! | AGACTGGCCAAATCTCCAAT+TGG | - | 50573:15096-15115 | None:intergenic | 45.0% |
| ! | TAACTTGTAGGTGGTGCATG+TGG | + | 50573:14343-14362 | MS.gene28619:intron | 45.0% |
| ! | TTAGGGAGTGCAAAGTTTGG+TGG | - | 50573:14544-14563 | None:intergenic | 45.0% |
| ACGCAAGGCAAGTTCCTCAA+TGG | + | 50573:14473-14492 | MS.gene28619:CDS | 50.0% | |
| GCACTCCCTAATGACAATGG+TGG | + | 50573:14553-14572 | MS.gene28619:CDS | 50.0% | |
| GTTCCTCAATGGTGTCTCAG+AGG | + | 50573:14484-14503 | MS.gene28619:CDS | 50.0% | |
| ! | TATGGTGGAAGTGATGCCTC+AGG | + | 50573:14214-14233 | MS.gene28619:CDS | 50.0% |
| GTAGGTGGTGCATGTGGGTA+TGG | + | 50573:14349-14368 | MS.gene28619:intron | 55.0% | |
| !! | GTGCCTCTGAGACACCATTG+AGG | - | 50573:14490-14509 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50573 | gene | 14148 | 15139 | 14148 | ID=MS.gene28619 |
| 50573 | mRNA | 14148 | 15139 | 14148 | ID=MS.gene28619.t1;Parent=MS.gene28619 |
| 50573 | exon | 14148 | 14244 | 14148 | ID=MS.gene28619.t1.exon1;Parent=MS.gene28619.t1 |
| 50573 | CDS | 14148 | 14244 | 14148 | ID=cds.MS.gene28619.t1;Parent=MS.gene28619.t1 |
| 50573 | exon | 14353 | 14674 | 14353 | ID=MS.gene28619.t1.exon2;Parent=MS.gene28619.t1 |
| 50573 | CDS | 14353 | 14674 | 14353 | ID=cds.MS.gene28619.t1;Parent=MS.gene28619.t1 |
| 50573 | exon | 14830 | 15139 | 14830 | ID=MS.gene28619.t1.exon3;Parent=MS.gene28619.t1 |
| 50573 | CDS | 14830 | 15139 | 14830 | ID=cds.MS.gene28619.t1;Parent=MS.gene28619.t1 |
| Gene Sequence |
| Protein sequence |
