AlfalfaGEDB | MS.gene36899

M. sativa cultivar XinJiangDaYe / MS.gene36899

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00514.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36899.t1	XP_013444940.1	97.1	561	16	0	1	561	1	561	4.40E-259	903.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36899.t1	A0A072TP55	97.1	561	16	0	1	561	24	584	3.2e-259	903.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene36899	0.802707	4.94E-49	-1.69E-46
MS.gene049159	MS.gene36899	0.8052	1.50E-49	-1.69E-46
MS.gene049178	MS.gene36899	0.826823	2.20E-54	-1.69E-46
MS.gene049435	MS.gene36899	0.8131	3.04E-51	-1.69E-46
MS.gene049501	MS.gene36899	0.831087	2.04E-55	-1.69E-46
MS.gene049647	MS.gene36899	0.809007	2.34E-50	-1.69E-46
MS.gene049669	MS.gene36899	0.803734	3.03E-49	-1.69E-46
MS.gene049821	MS.gene36899	0.801337	9.44E-49	-1.69E-46
MS.gene050137	MS.gene36899	0.823937	1.06E-53	-1.69E-46
MS.gene050156	MS.gene36899	0.816716	4.79E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene013180	MS.gene36899	PPI
MS.gene052565	MS.gene36899	PPI
MS.gene055531	MS.gene36899	PPI
MS.gene06253	MS.gene36899	PPI
MS.gene33842	MS.gene36899	PPI
MS.gene36899	MS.gene052564	PPI
MS.gene36899	MS.gene28664	PPI
MS.gene36899	MS.gene32213	PPI
MS.gene41659	MS.gene36899	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36899.t1	MTR_8g032570	96.791	561	18	0	1	561	24	584	0.0	1092
MS.gene36899.t1	MTR_8g032570	96.791	561	18	0	1	561	1	561	0.0	1092
MS.gene36899.t1	MTR_7g076220	77.660	564	119	3	1	561	1	560	0.0	878
MS.gene36899.t1	MTR_3g098730	35.382	537	321	13	37	560	30	553	3.07e-80	262
MS.gene36899.t1	MTR_4g091320	29.947	561	352	14	25	559	27	572	4.58e-63	217
MS.gene36899.t1	MTR_5g092900	52.459	122	19	4	372	491	32	116	4.21e-24	97.8
MS.gene36899.t1	MTR_1g018180	29.060	234	158	5	238	466	101	331	8.82e-20	91.3
MS.gene36899.t1	MTR_1g069845	28.862	246	162	7	238	478	484	721	2.09e-17	86.3
MS.gene36899.t1	MTR_1g069845	28.862	246	162	7	238	478	480	717	2.12e-17	86.3
MS.gene36899.t1	MTR_1g069845	28.862	246	162	7	238	478	363	600	2.15e-17	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36899.t1	AT2G45720	67.023	561	177	4	1	561	1	553	0.0	754
MS.gene36899.t1	AT2G45720	67.023	561	177	4	1	561	1	553	0.0	754
MS.gene36899.t1	AT2G45720	67.023	561	177	4	1	561	1	553	0.0	754
MS.gene36899.t1	AT2G45720	67.023	561	177	4	1	561	1	553	0.0	754
MS.gene36899.t1	AT2G45720	67.023	561	177	4	1	561	1	553	0.0	754
MS.gene36899.t1	AT1G01830	63.036	560	201	4	3	560	19	574	0.0	674
MS.gene36899.t1	AT1G01830	63.036	560	201	4	3	560	19	574	0.0	674
MS.gene36899.t1	AT1G01830	63.036	560	201	4	3	560	19	574	0.0	674
MS.gene36899.t1	AT5G50900	37.736	530	316	8	40	560	30	554	3.51e-102	319
MS.gene36899.t1	AT1G61350	27.605	547	361	12	38	559	32	568	6.21e-60	209

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Find 87 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACGCAGTTTGTTGCCT+TGG	0.353804	8.4:+63229942	MS.gene36899:CDS
AAATCGAAGAGAGGTTAAGA+AGG	0.584354	8.4:+63229857	MS.gene36899:CDS
AAGAAAATGTTAGGTGAAGT+TGG	0.452479	8.4:+63229738	MS.gene36899:CDS
AAGAGAAACCAGAGTTTCCT+CGG	0.556662	8.4:-63229613	None:intergenic
AAGAGGTTGATGATTTCATA+TGG	0.478705	8.4:+63229990	MS.gene36899:CDS
AATCTGCTGTTGGTGCATTG+AGG	0.654433	8.4:+63229571	MS.gene36899:CDS
ACAAAAGCAAGAGAGGTAAA+AGG	0.285811	8.4:+63228529	MS.gene36899:CDS
ACAGCAGATTCTTGAGGAAA+TGG	0.410112	8.4:-63229558	None:intergenic
ACCTGACAAAGCTCGACTAA+CGG	0.545060	8.4:-63229282	None:intergenic
ACGCCTTCAAATCGGTCATT+TGG	0.403237	8.4:+63228918	MS.gene36899:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAATGTTAGGTGAAGT+TGG	+	chr8.4:63229738-63229757	MS.gene36899:CDS	30.0%
AGTGATCTTGATGCATTAAT+TGG	+	chr8.4:63228754-63228773	MS.gene36899:CDS	30.0%
ATACATGTTCAACAGAAGAA+TGG	+	chr8.4:63228470-63228489	MS.gene36899:CDS	30.0%
ATGATTTCATATGGAGCAAT+AGG	+	chr8.4:63229999-63230018	MS.gene36899:CDS	30.0%
ATTAGCTGAGTTATGTTTGA+AGG	+	chr8.4:63228702-63228721	MS.gene36899:CDS	30.0%
CTTAACAATGGAATGTTGTT+AGG	+	chr8.4:63229420-63229439	MS.gene36899:CDS	30.0%
TCAAGCAATTGAACCAAATT+CGG	-	chr8.4:63229897-63229916	None:intergenic	30.0%
TGATTTCATATGGAGCAATA+GGG	+	chr8.4:63230000-63230019	MS.gene36899:CDS	30.0%
TTAACAAAAACTGGTGTACT+TGG	+	chr8.4:63228811-63228830	MS.gene36899:CDS	30.0%
TTCAAAGAATGCACTTTGTA+AGG	+	chr8.4:63228636-63228655	MS.gene36899:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	63228436	63230121	63228436	ID=MS.gene36899
chr8.4	mRNA	63228436	63230121	63228436	ID=MS.gene36899.t1;Parent=MS.gene36899
chr8.4	exon	63228436	63230121	63228436	ID=MS.gene36899.t1.exon1;Parent=MS.gene36899.t1
chr8.4	CDS	63228436	63230121	63228436	ID=cds.MS.gene36899.t1;Parent=MS.gene36899.t1

Gene Sequence

>MS.gene36899

ATGGTGGAAGATAGTATAGTAGCTGTCACAGTTGATACATGTTCAACAGAAGAATGGTTGTTGGACTCACAAGAACTTGTTCCTATTGCTCTTACAAAAGCAAGAGAGGTAAAAGGGTTTCAAGGTAGGTGGAAAATGATCATTTCAAAATTGGAACAAGTTCCATCAAAGCTATCAGATTTATCAAGCCACCCTTGTTTTTCAAAGAATGCACTTTGTAAGGAACAATTGCAGGCTGTGTCAAAGACACTAAGAGAAGCTATTGAATTAGCTGAGTTATGTTTGAAGGAAAAATATGAAGGTAAACTAAGAATGCAAAGTGATCTTGATGCATTAATTGGTAAGCTTGATTTGAATTTAAAGGATTGTAGCTTGTTAACAAAAACTGGTGTACTTGGTGAAGCTACTTTGCAATTCAATGTTTCTGTTTCTATAACAGAATCAGATATTGAAACACATTGCAATATAAAGGAGTTACTCGCACGCCTTCAAATCGGTCATTTGGAATCGAAACACAAAGCTTTGGATAGACTTCATGATATTATGAGAGAAGATGAGAAGAATGTTTTGGCTGCTTTTTGCAGGAGCAATGTTGTTGCTTTGGTTCAGTTGCTTACAGCAACATCAACAAGGATAAGGGAGAAAACAGTTAGTATTATATGCTCTCTTGTTGAATCCGGTGGTAGCTGCGAAAACTGGTTAGTTTCTGAAGGTGTTTTGCCACCACTTATAAGGCTTGTTGAATCAGGTAGTGCTATTGCTAAAGAAAAGGCTATTGTTTCTCTTCAAAGGTTGTCTATGACGGAAGACACAACTCGTGCAATCGTTGGACATGGAGGGGTTCGTCCGTTAGTCGAGCTTTGTCAGGTTGGTGATTCTGTTTCACAATCTGCAGCTGCTTGTACTTTGAAGAATATTTCGGCTGTTCCGGAAGTGAGACAGGTTTTGGCTGAAGAAGGCGTTGTTAAGGTTATGATCAATCTTCTTAACAATGGAATGTTGTTAGGAACTAAAGAGTATGCTGCTGAGTGTTTGCAGAATCTGACTGCAAGCAATGAGAATCTGAGAAGGTCTGTTATATCAGAAGGCGGCGTTCGAAGCATTTTGGCTTATCTTGATGGTCCATTTCCTCAAGAATCTGCTGTTGGTGCATTGAGGAATCTCGTTGCATCGGTTTCCGAGGAAACTCTGGTTTCTCTTGGATTGCTTCCTTGTTTAGTTCATGTTTTGAAATCAGGATCATTAGGTGCGAAACAATGCGCTGCATCGGTTATATGCAGGATTTGTAGCTCAATTGAGATGAAGAAAATGTTAGGTGAAGTTGGTTGCATTCCTCTATTGATCAACATGCTTGAGGGTAAAGCAAACACTGCAAGAGAACTTGCAGCACAAGCAATTGCAAGCTTGATGATTCTGTCGCAAAATCGAAGAGAGGTTAAGAAGGATGATAAAAGTGTGCCGAATTTGGTTCAATTGCTTGATCCTAGTCCACAAAACACTGCGAAAAAATACGCAGTTTGTTGCCTTGGATCACTTTCTTCTTGTAAGAAATGCAAGAGGTTGATGATTTCATATGGAGCAATAGGGTATCTGAAGAAGCTTATTGAGATGGAGATTCCAGGAACTAAAAAGTTGCTTGAAAGATTGGAAAGAGGGAAATTGAGAAGTTTGTTTAGCAGAAAATAA

Protein sequence

>MS.gene36899.t1

MVEDSIVAVTVDTCSTEEWLLDSQELVPIALTKAREVKGFQGRWKMIISKLEQVPSKLSDLSSHPCFSKNALCKEQLQAVSKTLREAIELAELCLKEKYEGKLRMQSDLDALIGKLDLNLKDCSLLTKTGVLGEATLQFNVSVSITESDIETHCNIKELLARLQIGHLESKHKALDRLHDIMREDEKNVLAAFCRSNVVALVQLLTATSTRIREKTVSIICSLVESGGSCENWLVSEGVLPPLIRLVESGSAIAKEKAIVSLQRLSMTEDTTRAIVGHGGVRPLVELCQVGDSVSQSAAACTLKNISAVPEVRQVLAEEGVVKVMINLLNNGMLLGTKEYAAECLQNLTASNENLRRSVISEGGVRSILAYLDGPFPQESAVGALRNLVASVSEETLVSLGLLPCLVHVLKSGSLGAKQCAASVICRICSSIEMKKMLGEVGCIPLLINMLEGKANTARELAAQAIASLMILSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVCCLGSLSSCKKCKRLMISYGAIGYLKKLIEMEIPGTKKLLERLERGKLRSLFSRK