Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28995.t1 | XP_013460987.1 | 85.3 | 252 | 28 | 3 | 1 | 244 | 1 | 251 | 1.40E-111 | 412.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28995.t1 | Q0WWT7 | 72.5 | 200 | 48 | 1 | 52 | 244 | 54 | 253 | 1.3e-83 | 310.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28995.t1 | A0A072UZZ1 | 85.3 | 252 | 28 | 3 | 1 | 244 | 1 | 251 | 9.8e-112 | 412.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene28995 | 0.827721 | 1.34E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene28995 | 0.806008 | 1.01E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene28995 | 0.809663 | 1.69E-50 | -1.69E-46 |
| MS.gene050770 | MS.gene28995 | 0.810112 | 1.36E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene28995 | 0.839651 | 1.39E-57 | -1.69E-46 |
| MS.gene051387 | MS.gene28995 | 0.805323 | 1.41E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene28995 | 0.828904 | 6.93E-55 | -1.69E-46 |
| MS.gene053322 | MS.gene28995 | 0.816765 | 4.67E-52 | -1.69E-46 |
| MS.gene054376 | MS.gene28995 | 0.820202 | 7.77E-53 | -1.69E-46 |
| MS.gene05455 | MS.gene28995 | 0.831778 | 1.38E-55 | -1.69E-46 |
| MS.gene054802 | MS.gene28995 | 0.849633 | 2.85E-60 | -1.69E-46 |
| MS.gene054803 | MS.gene28995 | 0.849794 | 2.57E-60 | -1.69E-46 |
| MS.gene054804 | MS.gene28995 | 0.846453 | 2.15E-59 | -1.69E-46 |
| MS.gene055277 | MS.gene28995 | 0.825915 | 3.61E-54 | -1.69E-46 |
| MS.gene055390 | MS.gene28995 | 0.814652 | 1.38E-51 | -1.69E-46 |
| MS.gene055428 | MS.gene28995 | 0.803578 | 3.26E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene28995 | 0.802032 | 6.80E-49 | -1.69E-46 |
| MS.gene056452 | MS.gene28995 | 0.85575 | 5.12E-62 | -1.69E-46 |
| MS.gene056942 | MS.gene28995 | 0.801552 | 8.53E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene28995 | 0.839746 | 1.32E-57 | -1.69E-46 |
| MS.gene057146 | MS.gene28995 | 0.81281 | 3.51E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene28995 | 0.805462 | 1.32E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene28995 | 0.845575 | 3.73E-59 | -1.69E-46 |
| MS.gene05907 | MS.gene28995 | 0.812016 | 5.24E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene28995 | 0.846067 | 2.74E-59 | -1.69E-46 |
| MS.gene059960 | MS.gene28995 | 0.829842 | 4.10E-55 | -1.69E-46 |
| MS.gene061200 | MS.gene28995 | 0.837289 | 5.67E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28995.t1 | MTR_3g075540 | 88.095 | 252 | 21 | 3 | 1 | 244 | 1 | 251 | 1.82e-156 | 436 |
| MS.gene28995.t1 | MTR_4g015860 | 35.196 | 179 | 108 | 3 | 55 | 231 | 40 | 212 | 4.22e-28 | 107 |
| MS.gene28995.t1 | MTR_7g092820 | 25.275 | 182 | 132 | 1 | 55 | 232 | 19 | 200 | 5.83e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28995.t1 | AT4G24750 | 61.660 | 253 | 88 | 3 | 1 | 244 | 1 | 253 | 6.52e-108 | 313 |
| MS.gene28995.t1 | AT3G08920 | 39.073 | 151 | 90 | 2 | 82 | 230 | 48 | 198 | 4.76e-25 | 99.0 |
| MS.gene28995.t1 | AT2G42220 | 32.394 | 142 | 89 | 1 | 86 | 227 | 63 | 197 | 1.60e-18 | 82.0 |
Find 72 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGCTTCCCATCTCTTTC+TGG | 0.133810 | 3.1:-62777577 | None:intergenic |
| AACAATTAGTTCTGCATCTT+TGG | 0.158493 | 3.1:-62779091 | None:intergenic |
| CCGGTTACACAAACCTGTTT+TGG | 0.266059 | 3.1:+62779409 | MS.gene28995:CDS |
| ATCTGTATCCCCAACCTTCT+TGG | 0.276572 | 3.1:-62780667 | None:intergenic |
| ACAATTAGTTCTGCATCTTT+GGG | 0.290043 | 3.1:-62779090 | None:intergenic |
| CCTCTTAAGTTTGCTGGAAT+TGG | 0.299694 | 3.1:+62779604 | MS.gene28995:CDS |
| CCAAAACAGGTTTGTGTAAC+CGG | 0.332922 | 3.1:-62779409 | None:intergenic |
| TCAGCGCCTCTTAAGTTTGC+TGG | 0.341434 | 3.1:+62779598 | MS.gene28995:CDS |
| GAGCTCACCTCAGTCCCTTC+TGG | 0.353437 | 3.1:-62779119 | None:intergenic |
| CCATCATCGACATTGAATAT+TGG | 0.361064 | 3.1:-62778782 | None:intergenic |
| GGGAACTTCTCCGCAACTTT+GGG | 0.366253 | 3.1:-62779069 | None:intergenic |
| CTGCTGCAGCCAAGAAGGTT+GGG | 0.372149 | 3.1:+62780658 | MS.gene28995:CDS |
| TGCTGGAATTGGTGGTGTTT+CGG | 0.379254 | 3.1:+62779615 | MS.gene28995:CDS |
| TTCAACTAGACAGAAGTCTA+TGG | 0.385292 | 3.1:+62777402 | MS.gene28995:CDS |
| GGTGGTGTTTCGGAATTCCT+TGG | 0.414207 | 3.1:+62779625 | MS.gene28995:CDS |
| CTTAAGTTTGCTGGAATTGG+TGG | 0.419134 | 3.1:+62779607 | MS.gene28995:CDS |
| AACCTTGTTGTGTTCATTTG+AGG | 0.419393 | 3.1:-62778368 | None:intergenic |
| GGGGAACTTCTCCGCAACTT+TGG | 0.424721 | 3.1:-62779070 | None:intergenic |
| AGCCTCCTTGAACCCAAAAC+AGG | 0.429532 | 3.1:-62779422 | None:intergenic |
| CTGCATATCCAGCTTCCCTT+GGG | 0.434527 | 3.1:-62778309 | None:intergenic |
| GTAGGTGTTGGTGTTGGAAT+TGG | 0.442509 | 3.1:-62777318 | None:intergenic |
| ACTGCATATCCAGCTTCCCT+TGG | 0.444447 | 3.1:-62778310 | None:intergenic |
| ATTGAAGCAAGTCAGGGATA+TGG | 0.444913 | 3.1:+62777548 | MS.gene28995:CDS |
| ACCTTGTTGTGTTCATTTGA+GGG | 0.445197 | 3.1:-62778367 | None:intergenic |
| ACAAGCCCCTTCTTGATGTT+CGG | 0.445700 | 3.1:+62778344 | MS.gene28995:CDS |
| GACATTGAATATTGGAATCC+AGG | 0.449682 | 3.1:-62778774 | None:intergenic |
| GTTCTTACCCCAAGGGAAGC+TGG | 0.464181 | 3.1:+62778301 | MS.gene28995:CDS |
| CCAATTCCAGCAAACTTAAG+AGG | 0.465822 | 3.1:-62779604 | None:intergenic |
| GTGGTGTTTCGGAATTCCTT+GGG | 0.488639 | 3.1:+62779626 | MS.gene28995:CDS |
| CAGAAAGAGATGGGAAGCTC+TGG | 0.490533 | 3.1:+62777578 | MS.gene28995:CDS |
| GCTGCTGCAGCCAAGAAGGT+TGG | 0.491104 | 3.1:+62780657 | MS.gene28995:CDS |
| CCAATATTCAATGTCGATGA+TGG | 0.493249 | 3.1:+62778782 | MS.gene28995:CDS |
| GGAATTGGTAACAGTGATTG+TGG | 0.521328 | 3.1:-62777303 | None:intergenic |
| GGCTGCTGCCAGAAAGAGAT+GGG | 0.527321 | 3.1:+62777569 | MS.gene28995:CDS |
| GAATTGGTAACAGTGATTGT+GGG | 0.531813 | 3.1:-62777302 | None:intergenic |
| CTTTGATGCTGCTGAAGAAG+AGG | 0.535812 | 3.1:+62779443 | MS.gene28995:CDS |
| TAGATGTTGGAACCATTCCC+AGG | 0.536270 | 3.1:+62778807 | MS.gene28995:CDS |
| GGTAACAGTGATTGTGGGAA+GGG | 0.538152 | 3.1:-62777297 | None:intergenic |
| AAGAGCTGCTGCAGCCAAGA+AGG | 0.540308 | 3.1:+62780653 | MS.gene28995:CDS |
| TGTTATGAACAGGAGGTTGG+TGG | 0.549582 | 3.1:+62778919 | MS.gene28995:intron |
| GTCGATGATGGTCTAGATGT+TGG | 0.552986 | 3.1:+62778794 | MS.gene28995:CDS |
| CTAATTGTTGCATGCCAGAA+GGG | 0.553912 | 3.1:+62779105 | MS.gene28995:CDS |
| TGGTAACAGTGATTGTGGGA+AGG | 0.563931 | 3.1:-62777298 | None:intergenic |
| TTGAGGGCCGAACATCAAGA+AGG | 0.565178 | 3.1:-62778351 | None:intergenic |
| CATGGGTGAAAGGTTCAACC+TGG | 0.567974 | 3.1:+62778756 | MS.gene28995:CDS |
| TTCTGTCTAGTTGAAGAAGA+AGG | 0.568939 | 3.1:-62777394 | None:intergenic |
| TGCTGCAGCCAAGAAGGTTG+GGG | 0.571750 | 3.1:+62780659 | MS.gene28995:CDS |
| CAATTAGTTCTGCATCTTTG+GGG | 0.572471 | 3.1:-62779089 | None:intergenic |
| TGAACAGGAGGTTGGTGGAG+TGG | 0.574736 | 3.1:+62778924 | MS.gene28995:intron |
| AGAAATGTAGGTGTTGGTGT+TGG | 0.575274 | 3.1:-62777324 | None:intergenic |
| ACTTAGAGAAATGTAGGTGT+TGG | 0.580172 | 3.1:-62777330 | None:intergenic |
| AAATTAAGGTTCTTACCCCA+AGG | 0.581254 | 3.1:+62778293 | MS.gene28995:intron |
| TGAGGGCCGAACATCAAGAA+GGG | 0.582614 | 3.1:-62778350 | None:intergenic |
| ACTAATTGTTGCATGCCAGA+AGG | 0.587081 | 3.1:+62779104 | MS.gene28995:CDS |
| AGCGGCACTTAGAGAAATGT+AGG | 0.593525 | 3.1:-62777336 | None:intergenic |
| TGGCTGCTGCCAGAAAGAGA+TGG | 0.598638 | 3.1:+62777568 | MS.gene28995:CDS |
| GAGCAGGATCTTGTCGTGGA+GGG | 0.602986 | 3.1:+62779574 | MS.gene28995:intron |
| AATTAAGGTTCTTACCCCAA+GGG | 0.606343 | 3.1:+62778294 | MS.gene28995:intron |
| TGATGTTATGAACAGGAGGT+TGG | 0.608404 | 3.1:+62778916 | MS.gene28995:intron |
| TGTGAACTACTATATAATGC+CGG | 0.608880 | 3.1:+62779390 | MS.gene28995:CDS |
| GGAGCAGGATCTTGTCGTGG+AGG | 0.618802 | 3.1:+62779573 | MS.gene28995:intron |
| CTCGTTCTTACCCAAAGTTG+CGG | 0.625365 | 3.1:+62779059 | MS.gene28995:CDS |
| GAGGGCCGAACATCAAGAAG+GGG | 0.626090 | 3.1:-62778349 | None:intergenic |
| ACTAGACAGAAGTCTATGGT+TGG | 0.629460 | 3.1:+62777406 | MS.gene28995:CDS |
| GTCTAGTTGAAGAAGAAGGA+CGG | 0.638770 | 3.1:-62777390 | None:intergenic |
| GCCCTCAAATGAACACAACA+AGG | 0.642119 | 3.1:+62778366 | MS.gene28995:CDS |
| GAGTGAGGCATAATTAGTAG+CGG | 0.656820 | 3.1:-62777354 | None:intergenic |
| TGCATATCCAGCTTCCCTTG+GGG | 0.664362 | 3.1:-62778308 | None:intergenic |
| TGTGGAGCAGGATCTTGTCG+TGG | 0.697794 | 3.1:+62779570 | MS.gene28995:intron |
| GGTGTTGTAAGAAGAGAGTG+AGG | 0.698232 | 3.1:-62777369 | None:intergenic |
| TTGCATGCCAGAAGGGACTG+AGG | 0.715447 | 3.1:+62779112 | MS.gene28995:CDS |
| TACTTGTCAAAAGACAGTGT+AGG | 0.751162 | 3.1:-62778951 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAATCACCA+TGG | - | chr3.1:62779983-62780002 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAATCACCAT+GGG | - | chr3.1:62779982-62780001 | None:intergenic | 15.0% |
| !! | ATGTTAATAACTATCAATTT+GGG | + | chr3.1:62780097-62780116 | MS.gene28995:intron | 15.0% |
| !! | ATTTAAACATCTTATTGTTA+TGG | + | chr3.1:62778500-62778519 | MS.gene28995:intron | 15.0% |
| !! | TTAATAGAATCAAATGTATA+AGG | - | chr3.1:62778608-62778627 | None:intergenic | 15.0% |
| !!! | AAAATTACTTTATTGTTGTT+TGG | + | chr3.1:62779907-62779926 | MS.gene28995:intron | 15.0% |
| !!! | AAATTACTTTATTGTTGTTT+GGG | + | chr3.1:62779908-62779927 | MS.gene28995:intron | 15.0% |
| !! | AAACAATTTCAATGACAAAA+GGG | + | chr3.1:62780067-62780086 | MS.gene28995:intron | 20.0% |
| !! | AGACAAATATTAGAAATTAG+TGG | + | chr3.1:62778032-62778051 | MS.gene28995:intron | 20.0% |
| !! | ATATTGTAGCATTAGAAATT+AGG | - | chr3.1:62779683-62779702 | None:intergenic | 20.0% |
| !! | GAAAATAAAAATAACTTCTC+TGG | + | chr3.1:62779524-62779543 | MS.gene28995:intron | 20.0% |
| !! | GATGTTAATAACTATCAATT+TGG | + | chr3.1:62780096-62780115 | MS.gene28995:intron | 20.0% |
| !! | TAAACAATTTCAATGACAAA+AGG | + | chr3.1:62780066-62780085 | MS.gene28995:intron | 20.0% |
| !! | TATAAATGTAATGAAAGAGT+CGG | - | chr3.1:62778872-62778891 | None:intergenic | 20.0% |
| !! | TATCATGATGAATTCTAATT+TGG | + | chr3.1:62779700-62779719 | MS.gene28995:intron | 20.0% |
| !! | TTTGTTCAATCAAATTATTG+TGG | + | chr3.1:62779270-62779289 | MS.gene28995:intron | 20.0% |
| !!! | AAAATCACAAATTTTGCTAA+GGG | + | chr3.1:62778830-62778849 | MS.gene28995:CDS | 20.0% |
| !!! | AATCTAATAGTGTTTGTTAT+TGG | + | chr3.1:62778160-62778179 | MS.gene28995:intron | 20.0% |
| !!! | AATTACTTTATTGTTGTTTG+GGG | + | chr3.1:62779909-62779928 | MS.gene28995:intron | 20.0% |
| !!! | ATCTTTATTTTTTCATATGC+TGG | + | chr3.1:62780027-62780046 | MS.gene28995:intron | 20.0% |
| !!! | CAATTACCAATTACATTTTA+AGG | - | chr3.1:62779202-62779221 | None:intergenic | 20.0% |
| !!! | CTTAAAATGTAATTGGTAAT+TGG | + | chr3.1:62779200-62779219 | MS.gene28995:intron | 20.0% |
| !!! | TCAGAACAATTTTAAAAGTT+TGG | + | chr3.1:62780586-62780605 | MS.gene28995:intron | 20.0% |
| !!! | TTACTAATCAATTTTGAGAT+CGG | + | chr3.1:62780208-62780227 | MS.gene28995:intron | 20.0% |
| ! | AGAAAATGAAATGCTAGTTA+TGG | + | chr3.1:62777789-62777808 | MS.gene28995:intron | 25.0% |
| ! | AGAAATTCAGAAACTGAAAT+GGG | - | chr3.1:62779477-62779496 | None:intergenic | 25.0% |
| ! | ATACTTCTCACAAGTTTAAT+TGG | + | chr3.1:62779855-62779874 | MS.gene28995:intron | 25.0% |
| ! | ATTCAATTCAACCAAAAACT+AGG | - | chr3.1:62777919-62777938 | None:intergenic | 25.0% |
| ! | CCATTTCCTTAAAATGTAAT+TGG | + | chr3.1:62779193-62779212 | MS.gene28995:intron | 25.0% |
| ! | GCTGTACTCTAATTAAATTT+AGG | + | chr3.1:62779502-62779521 | MS.gene28995:intron | 25.0% |
| ! | TAAGGTTTACATTGTCTATT+TGG | - | chr3.1:62779329-62779348 | None:intergenic | 25.0% |
| ! | TAGAAATTCAGAAACTGAAA+TGG | - | chr3.1:62779478-62779497 | None:intergenic | 25.0% |
| ! | TATATCACCAACAAATATCT+AGG | - | chr3.1:62777950-62777969 | None:intergenic | 25.0% |
| ! | TTAAGTTTGTGCAATTACAA+TGG | - | chr3.1:62780494-62780513 | None:intergenic | 25.0% |
| ! | TTCTTATCCTAGATATTTGT+TGG | + | chr3.1:62777940-62777959 | MS.gene28995:intron | 25.0% |
| !! | ACTTGTTAAATGATTAGAGA+TGG | - | chr3.1:62779301-62779320 | None:intergenic | 25.0% |
| !! | GAAAATCACAAATTTTGCTA+AGG | + | chr3.1:62778829-62778848 | MS.gene28995:CDS | 25.0% |
| !!! | CCAATTACATTTTAAGGAAA+TGG | - | chr3.1:62779196-62779215 | None:intergenic | 25.0% |
| !!! | GTTGGTGATATAGATTATTT+GGG | + | chr3.1:62777958-62777977 | MS.gene28995:intron | 25.0% |
| !!! | TGTTGGTGATATAGATTATT+TGG | + | chr3.1:62777957-62777976 | MS.gene28995:intron | 25.0% |
| !!! | TTGGATGACTGTATTTTAAT+GGG | + | chr3.1:62778235-62778254 | MS.gene28995:intron | 25.0% |
| !!! | TTTATTTTTTCCTAGATCGA+CGG | + | chr3.1:62780126-62780145 | MS.gene28995:intron | 25.0% |
| !!! | TTTGGATGACTGTATTTTAA+TGG | + | chr3.1:62778234-62778253 | MS.gene28995:intron | 25.0% |
| AAATGTGACTCAAAACACAA+GGG | - | chr3.1:62779237-62779256 | None:intergenic | 30.0% | |
| AAATTAGGAAGTAAGGTTAG+AGG | - | chr3.1:62779668-62779687 | None:intergenic | 30.0% | |
| AACATCTTATTGTTATGGTC+AGG | + | chr3.1:62778505-62778524 | MS.gene28995:intron | 30.0% | |
| AACTGCAATTCTTATGTCAT+TGG | + | chr3.1:62780266-62780285 | MS.gene28995:intron | 30.0% | |
| AAGAAACGAAAATCTTCACT+TGG | - | chr3.1:62777699-62777718 | None:intergenic | 30.0% | |
| AAGATCACAACAATAATGTG+TGG | - | chr3.1:62778708-62778727 | None:intergenic | 30.0% | |
| ACTGCAATATTATTTCCAGT+TGG | + | chr3.1:62780619-62780638 | MS.gene28995:intron | 30.0% | |
| ACTGCAATTCTTATGTCATT+GGG | + | chr3.1:62780267-62780286 | MS.gene28995:intron | 30.0% | |
| GATCGTTTATCATGAATTCA+TGG | - | chr3.1:62780331-62780350 | None:intergenic | 30.0% | |
| GCATTAGAAATTAGGAAGTA+AGG | - | chr3.1:62779675-62779694 | None:intergenic | 30.0% | |
| TATGTGCAAGTGCAATATAT+TGG | - | chr3.1:62778430-62778449 | None:intergenic | 30.0% | |
| TGTGAACTACTATATAATGC+CGG | + | chr3.1:62779390-62779409 | MS.gene28995:CDS | 30.0% | |
| TTAGTTTAAGAGTTCTCTGA+TGG | + | chr3.1:62779727-62779746 | MS.gene28995:intron | 30.0% | |
| TTCTCACAAGTTTAATTGGT+TGG | + | chr3.1:62779859-62779878 | MS.gene28995:intron | 30.0% | |
| TTTAGTTAGTTACCTCTAGT+AGG | + | chr3.1:62778453-62778472 | MS.gene28995:intron | 30.0% | |
| ! | AATCTGGAATACATAACACA+TGG | - | chr3.1:62780307-62780326 | None:intergenic | 30.0% |
| ! | AGAAGTATAATGTTCTAGTG+TGG | - | chr3.1:62779843-62779862 | None:intergenic | 30.0% |
| ! | AGCAAAATTTGTGATTTTCC+TGG | - | chr3.1:62778828-62778847 | None:intergenic | 30.0% |
| ! | ATGTGTTTTCACAGAGTAAA+TGG | + | chr3.1:62777891-62777910 | MS.gene28995:intron | 30.0% |
| ! | ATTTTGAATTGAAGCAAGTC+AGG | + | chr3.1:62777541-62777560 | MS.gene28995:CDS | 30.0% |
| ! | GATTATTTGGGATTTCTCAA+AGG | + | chr3.1:62777970-62777989 | MS.gene28995:intron | 30.0% |
| ! | GCAAAATTTGTGATTTTCCT+GGG | - | chr3.1:62778827-62778846 | None:intergenic | 30.0% |
| ! | TAGCATGTAGTTTCATCTTT+TGG | - | chr3.1:62780186-62780205 | None:intergenic | 30.0% |
| ! | TTTTGAATTGAAGCAAGTCA+GGG | + | chr3.1:62777542-62777561 | MS.gene28995:CDS | 30.0% |
| !! | AACAATTAGTTCTGCATCTT+TGG | - | chr3.1:62779094-62779113 | None:intergenic | 30.0% |
| !! | ACAATTAGTTCTGCATCTTT+GGG | - | chr3.1:62779093-62779112 | None:intergenic | 30.0% |
| !! | TTTGACTTGATGTTATGAAC+AGG | + | chr3.1:62778909-62778928 | MS.gene28995:intron | 30.0% |
| !!! | TGGATGACTGTATTTTAATG+GGG | + | chr3.1:62778236-62778255 | MS.gene28995:intron | 30.0% |
| !!! | TTGAAGGAGTTTTAAGCAAT+AGG | - | chr3.1:62778087-62778106 | None:intergenic | 30.0% |
| AAATTAAGGTTCTTACCCCA+AGG | + | chr3.1:62778293-62778312 | MS.gene28995:intron | 35.0% | |
| AATGTGACTCAAAACACAAG+GGG | - | chr3.1:62779236-62779255 | None:intergenic | 35.0% | |
| AATTAAGGTTCTTACCCCAA+GGG | + | chr3.1:62778294-62778313 | MS.gene28995:intron | 35.0% | |
| ACAACATTCTTCTTCTGCAA+AGG | - | chr3.1:62777498-62777517 | None:intergenic | 35.0% | |
| ACTTAGAGAAATGTAGGTGT+TGG | - | chr3.1:62777333-62777352 | None:intergenic | 35.0% | |
| AGCTCAGGGATGAAAAATTA+AGG | + | chr3.1:62778279-62778298 | MS.gene28995:intron | 35.0% | |
| ATCAGGTTCAGAACAACATA+AGG | - | chr3.1:62779347-62779366 | None:intergenic | 35.0% | |
| ATCATGAATTCATGGCAATC+TGG | - | chr3.1:62780323-62780342 | None:intergenic | 35.0% | |
| ATTCGATCCAGAAACTAACA+TGG | - | chr3.1:62778058-62778077 | None:intergenic | 35.0% | |
| CAATTTCAATGACAAAAGGG+AGG | + | chr3.1:62780070-62780089 | MS.gene28995:intron | 35.0% | |
| CCAATATTCAATGTCGATGA+TGG | + | chr3.1:62778782-62778801 | MS.gene28995:CDS | 35.0% | |
| CCATCATCGACATTGAATAT+TGG | - | chr3.1:62778785-62778804 | None:intergenic | 35.0% | |
| GAAATGTGACTCAAAACACA+AGG | - | chr3.1:62779238-62779257 | None:intergenic | 35.0% | |
| GAAGAATGTTCATAGATCGT+TGG | + | chr3.1:62780468-62780487 | MS.gene28995:intron | 35.0% | |
| GACATTGAATATTGGAATCC+AGG | - | chr3.1:62778777-62778796 | None:intergenic | 35.0% | |
| TACTTGTCAAAAGACAGTGT+AGG | - | chr3.1:62778954-62778973 | None:intergenic | 35.0% | |
| TTCAACTAGACAGAAGTCTA+TGG | + | chr3.1:62777402-62777421 | MS.gene28995:CDS | 35.0% | |
| TTCTGTCTAGTTGAAGAAGA+AGG | - | chr3.1:62777397-62777416 | None:intergenic | 35.0% | |
| ! | AACCTTGTTGTGTTCATTTG+AGG | - | chr3.1:62778371-62778390 | None:intergenic | 35.0% |
| ! | ACCTTGTTGTGTTCATTTGA+GGG | - | chr3.1:62778370-62778389 | None:intergenic | 35.0% |
| ! | ATGTAGTTTCATCTTTTGGC+AGG | - | chr3.1:62780182-62780201 | None:intergenic | 35.0% |
| ! | ATTTGTGATTTTCCTGGGAA+TGG | - | chr3.1:62778822-62778841 | None:intergenic | 35.0% |
| ! | GAATTGGTAACAGTGATTGT+GGG | - | chr3.1:62777305-62777324 | None:intergenic | 35.0% |
| ! | TCATTTTCTCTCGACCATAA+TGG | - | chr3.1:62777778-62777797 | None:intergenic | 35.0% |
| ! | TCTTTTTGCTTACGATATGC+AGG | + | chr3.1:62780532-62780551 | MS.gene28995:intron | 35.0% |
| ! | TTAATCCTTTTGGTCTGTTG+TGG | + | chr3.1:62779552-62779571 | MS.gene28995:intron | 35.0% |
| ! | TTAGTTTCTGGATCGAATCT+GGG | + | chr3.1:62778060-62778079 | MS.gene28995:intron | 35.0% |
| !! | AGTAAATGGAGCCTAGTTTT+TGG | + | chr3.1:62777905-62777924 | MS.gene28995:intron | 35.0% |
| !! | CAATTAGTTCTGCATCTTTG+GGG | - | chr3.1:62779092-62779111 | None:intergenic | 35.0% |
| !! | GCTCTTTTTGCATGTTTTGA+AGG | + | chr3.1:62778733-62778752 | MS.gene28995:intron | 35.0% |
| !!! | GGATGACTGTATTTTAATGG+GGG | + | chr3.1:62778237-62778256 | MS.gene28995:intron | 35.0% |
| !!! | TTTGCATGTTTTGAAGGCAT+GGG | + | chr3.1:62778739-62778758 | MS.gene28995:intron | 35.0% |
| !!! | TTTTGCATGTTTTGAAGGCA+TGG | + | chr3.1:62778738-62778757 | MS.gene28995:intron | 35.0% |
| ACTAATTGTTGCATGCCAGA+AGG | + | chr3.1:62779104-62779123 | MS.gene28995:CDS | 40.0% | |
| ACTAGACAGAAGTCTATGGT+TGG | + | chr3.1:62777406-62777425 | MS.gene28995:CDS | 40.0% | |
| ACTCTTGAAGCGAACCATTA+TGG | + | chr3.1:62777761-62777780 | MS.gene28995:intron | 40.0% | |
| AGTTAGTTACCTCTAGTAGG+AGG | + | chr3.1:62778456-62778475 | MS.gene28995:intron | 40.0% | |
| ATTGAAGCAAGTCAGGGATA+TGG | + | chr3.1:62777548-62777567 | MS.gene28995:CDS | 40.0% | |
| CAAGTGCAATATATTGGCCA+AGG | - | chr3.1:62778424-62778443 | None:intergenic | 40.0% | |
| CCAAAACAGGTTTGTGTAAC+CGG | - | chr3.1:62779412-62779431 | None:intergenic | 40.0% | |
| CCAATTCCAGCAAACTTAAG+AGG | - | chr3.1:62779607-62779626 | None:intergenic | 40.0% | |
| CTAATTGTTGCATGCCAGAA+GGG | + | chr3.1:62779105-62779124 | MS.gene28995:CDS | 40.0% | |
| CTGTCATGAGTGATTGATCT+TGG | + | chr3.1:62778543-62778562 | MS.gene28995:intron | 40.0% | |
| GACTTGATGTTATGAACAGG+AGG | + | chr3.1:62778912-62778931 | MS.gene28995:intron | 40.0% | |
| GAGTGAGGCATAATTAGTAG+CGG | - | chr3.1:62777357-62777376 | None:intergenic | 40.0% | |
| GCTTTCAACAGTTACTACCA+AGG | - | chr3.1:62778570-62778589 | None:intergenic | 40.0% | |
| GGTAAGGTAAGAGACATTGA+AGG | - | chr3.1:62778103-62778122 | None:intergenic | 40.0% | |
| GTCTAGTTGAAGAAGAAGGA+CGG | - | chr3.1:62777393-62777412 | None:intergenic | 40.0% | |
| TAATGATCTGGCCAACAATC+AGG | - | chr3.1:62779364-62779383 | None:intergenic | 40.0% | |
| TAATGTTCTAGTGTGGCAAC+TGG | - | chr3.1:62779836-62779855 | None:intergenic | 40.0% | |
| TCTTTGTTGATCAGTCCAAC+TGG | - | chr3.1:62780637-62780656 | None:intergenic | 40.0% | |
| TGAGATTAGATAGCTACCCA+AGG | - | chr3.1:62779645-62779664 | None:intergenic | 40.0% | |
| TGATGTTATGAACAGGAGGT+TGG | + | chr3.1:62778916-62778935 | MS.gene28995:intron | 40.0% | |
| TGGGATTTCTCAAAGGCTTT+GGG | + | chr3.1:62777977-62777996 | MS.gene28995:intron | 40.0% | |
| TTCACAAGCAGCTAATGATC+TGG | - | chr3.1:62779376-62779395 | None:intergenic | 40.0% | |
| TTGGGATTTCTCAAAGGCTT+TGG | + | chr3.1:62777976-62777995 | MS.gene28995:intron | 40.0% | |
| ! | CGGTTACACAAACCTGTTTT+GGG | + | chr3.1:62779410-62779429 | MS.gene28995:CDS | 40.0% |
| ! | GGAATTGGTAACAGTGATTG+TGG | - | chr3.1:62777306-62777325 | None:intergenic | 40.0% |
| ! | GTTAGTTTCTGGATCGAATC+TGG | + | chr3.1:62778059-62778078 | MS.gene28995:intron | 40.0% |
| ! | GTTGTTCTGAACCTGATTGT+TGG | + | chr3.1:62779350-62779369 | MS.gene28995:intron | 40.0% |
| ! | TCTGGTGAGCTTAATCCTTT+TGG | + | chr3.1:62779542-62779561 | MS.gene28995:intron | 40.0% |
| ! | TTAGTGGCCATGTTAGTTTC+TGG | + | chr3.1:62778048-62778067 | MS.gene28995:intron | 40.0% |
| !! | AGAAATGTAGGTGTTGGTGT+TGG | - | chr3.1:62777327-62777346 | None:intergenic | 40.0% |
| !! | CCTCTTAAGTTTGCTGGAAT+TGG | + | chr3.1:62779604-62779623 | MS.gene28995:CDS | 40.0% |
| !! | CTTAAGTTTGCTGGAATTGG+TGG | + | chr3.1:62779607-62779626 | MS.gene28995:CDS | 40.0% |
| !! | CTTTATTGTTGTTTGGGGCA+TGG | + | chr3.1:62779914-62779933 | MS.gene28995:intron | 40.0% |
| !! | GCTCTTGCTTTTGTTTACCT+TGG | + | chr3.1:62778404-62778423 | MS.gene28995:intron | 40.0% |
| !!! | ACAAACCTGTTTTGGGTTCA+AGG | + | chr3.1:62779417-62779436 | MS.gene28995:CDS | 40.0% |
| AATAGACTGTCCGTCGATCT+AGG | - | chr3.1:62780139-62780158 | None:intergenic | 45.0% | |
| ACAAGCCCCTTCTTGATGTT+CGG | + | chr3.1:62778344-62778363 | MS.gene28995:CDS | 45.0% | |
| AGCGGCACTTAGAGAAATGT+AGG | - | chr3.1:62777339-62777358 | None:intergenic | 45.0% | |
| AGTTTACTAAAGAGCCGCGT+AGG | - | chr3.1:62778136-62778155 | None:intergenic | 45.0% | |
| ATCTGTATCCCCAACCTTCT+TGG | - | chr3.1:62780670-62780689 | None:intergenic | 45.0% | |
| CGTGTTTGCTTTGTAGCTCA+GGG | + | chr3.1:62778265-62778284 | MS.gene28995:intron | 45.0% | |
| CTCGTTCTTACCCAAAGTTG+CGG | + | chr3.1:62779059-62779078 | MS.gene28995:CDS | 45.0% | |
| CTTTGATGCTGCTGAAGAAG+AGG | + | chr3.1:62779443-62779462 | MS.gene28995:CDS | 45.0% | |
| GAGTGATTGATCTTGGACCT+TGG | + | chr3.1:62778550-62778569 | MS.gene28995:intron | 45.0% | |
| GCCCTCAAATGAACACAACA+AGG | + | chr3.1:62778366-62778385 | MS.gene28995:CDS | 45.0% | |
| GGTAACAGTGATTGTGGGAA+GGG | - | chr3.1:62777300-62777319 | None:intergenic | 45.0% | |
| GTGGTGTTTCGGAATTCCTT+GGG | + | chr3.1:62779626-62779645 | MS.gene28995:CDS | 45.0% | |
| TAGATCGACGGACAGTCTAT+TGG | + | chr3.1:62780138-62780157 | MS.gene28995:intron | 45.0% | |
| TAGATGTTGGAACCATTCCC+AGG | + | chr3.1:62778807-62778826 | MS.gene28995:CDS | 45.0% | |
| TAGTAGGAGGTGACAAGGAA+AGG | + | chr3.1:62778469-62778488 | MS.gene28995:intron | 45.0% | |
| TGATGCATGTTGAAGACCCA+TGG | + | chr3.1:62779963-62779982 | MS.gene28995:intron | 45.0% | |
| TGGTAACAGTGATTGTGGGA+AGG | - | chr3.1:62777301-62777320 | None:intergenic | 45.0% | |
| TGTTATGAACAGGAGGTTGG+TGG | + | chr3.1:62778919-62778938 | MS.gene28995:intron | 45.0% | |
| ! | CCGGTTACACAAACCTGTTT+TGG | + | chr3.1:62779409-62779428 | MS.gene28995:CDS | 45.0% |
| ! | CTGCGATCTTCTTTTGCGTT+TGG | + | chr3.1:62778216-62778235 | MS.gene28995:intron | 45.0% |
| ! | GGTGTTGTAAGAAGAGAGTG+AGG | - | chr3.1:62777372-62777391 | None:intergenic | 45.0% |
| ! | GTCGATGATGGTCTAGATGT+TGG | + | chr3.1:62778794-62778813 | MS.gene28995:CDS | 45.0% |
| !! | GTAGGTGTTGGTGTTGGAAT+TGG | - | chr3.1:62777321-62777340 | None:intergenic | 45.0% |
| !! | TGCTGGAATTGGTGGTGTTT+CGG | + | chr3.1:62779615-62779634 | MS.gene28995:CDS | 45.0% |
| !!! | AACCTGTTTTGGGTTCAAGG+AGG | + | chr3.1:62779420-62779439 | MS.gene28995:CDS | 45.0% |
| !!! | GTTTTGAAGGCATGGGTGAA+AGG | + | chr3.1:62778746-62778765 | MS.gene28995:intron | 45.0% |
| ACCTCTAGTAGGAGGTGACA+AGG | + | chr3.1:62778464-62778483 | MS.gene28995:intron | 50.0% | |
| ACTGCATATCCAGCTTCCCT+TGG | - | chr3.1:62778313-62778332 | None:intergenic | 50.0% | |
| AGCCTCCTTGAACCCAAAAC+AGG | - | chr3.1:62779425-62779444 | None:intergenic | 50.0% | |
| CAGAAAGAGATGGGAAGCTC+TGG | + | chr3.1:62777578-62777597 | MS.gene28995:CDS | 50.0% | |
| CAGAGCTTCCCATCTCTTTC+TGG | - | chr3.1:62777580-62777599 | None:intergenic | 50.0% | |
| CATGGGTGAAAGGTTCAACC+TGG | + | chr3.1:62778756-62778775 | MS.gene28995:CDS | 50.0% | |
| CTGCATATCCAGCTTCCCTT+GGG | - | chr3.1:62778312-62778331 | None:intergenic | 50.0% | |
| CTGCTCCACAACAGACCAAA+AGG | - | chr3.1:62779560-62779579 | None:intergenic | 50.0% | |
| GCGTGTTTGCTTTGTAGCTC+AGG | + | chr3.1:62778264-62778283 | MS.gene28995:intron | 50.0% | |
| GGGAACTTCTCCGCAACTTT+GGG | - | chr3.1:62779072-62779091 | None:intergenic | 50.0% | |
| GGTGGTGTTTCGGAATTCCT+TGG | + | chr3.1:62779625-62779644 | MS.gene28995:CDS | 50.0% | |
| TCAGCGCCTCTTAAGTTTGC+TGG | + | chr3.1:62779598-62779617 | MS.gene28995:CDS | 50.0% | |
| TCCTTGTCACCTCCTACTAG+AGG | - | chr3.1:62778468-62778487 | None:intergenic | 50.0% | |
| TGAGGGCCGAACATCAAGAA+GGG | - | chr3.1:62778353-62778372 | None:intergenic | 50.0% | |
| TGCATATCCAGCTTCCCTTG+GGG | - | chr3.1:62778311-62778330 | None:intergenic | 50.0% | |
| TGGGGCATGGTATAGTGCAT+GGG | + | chr3.1:62779927-62779946 | MS.gene28995:intron | 50.0% | |
| TTGAGGGCCGAACATCAAGA+AGG | - | chr3.1:62778354-62778373 | None:intergenic | 50.0% | |
| TTGGGGCATGGTATAGTGCA+TGG | + | chr3.1:62779926-62779945 | MS.gene28995:intron | 50.0% | |
| ! | CTTTTGGTCTGTTGTGGAGC+AGG | + | chr3.1:62779558-62779577 | MS.gene28995:intron | 50.0% |
| AAAGAGCCGCGTAGGTAGCT+CGG | - | chr3.1:62778128-62778147 | None:intergenic | 55.0% | |
| AAGAGCTGCTGCAGCCAAGA+AGG | + | chr3.1:62780653-62780672 | MS.gene28995:CDS | 55.0% | |
| CTGCTGCAGCCAAGAAGGTT+GGG | + | chr3.1:62780658-62780677 | MS.gene28995:CDS | 55.0% | |
| GAGCAGGATCTTGTCGTGGA+GGG | + | chr3.1:62779574-62779593 | MS.gene28995:intron | 55.0% | |
| GAGGGCCGAACATCAAGAAG+GGG | - | chr3.1:62778352-62778371 | None:intergenic | 55.0% | |
| GGCTGCTGCCAGAAAGAGAT+GGG | + | chr3.1:62777569-62777588 | MS.gene28995:CDS | 55.0% | |
| GGGGAACTTCTCCGCAACTT+TGG | - | chr3.1:62779073-62779092 | None:intergenic | 55.0% | |
| GTTCTTACCCCAAGGGAAGC+TGG | + | chr3.1:62778301-62778320 | MS.gene28995:CDS | 55.0% | |
| TACCAACCGAGCTACCTACG+CGG | + | chr3.1:62778119-62778138 | MS.gene28995:intron | 55.0% | |
| TGCTGCAGCCAAGAAGGTTG+GGG | + | chr3.1:62780659-62780678 | MS.gene28995:CDS | 55.0% | |
| TGGCTGCTGCCAGAAAGAGA+TGG | + | chr3.1:62777568-62777587 | MS.gene28995:CDS | 55.0% | |
| TGTGGAGCAGGATCTTGTCG+TGG | + | chr3.1:62779570-62779589 | MS.gene28995:intron | 55.0% | |
| TTGCATGCCAGAAGGGACTG+AGG | + | chr3.1:62779112-62779131 | MS.gene28995:CDS | 55.0% | |
| ! | CGTAGGTAGCTCGGTTGGTA+AGG | - | chr3.1:62778119-62778138 | None:intergenic | 55.0% |
| !! | TGAACAGGAGGTTGGTGGAG+TGG | + | chr3.1:62778924-62778943 | MS.gene28995:intron | 55.0% |
| GAGCTCACCTCAGTCCCTTC+TGG | - | chr3.1:62779122-62779141 | None:intergenic | 60.0% | |
| GCTGCTGCAGCCAAGAAGGT+TGG | + | chr3.1:62780657-62780676 | MS.gene28995:CDS | 60.0% | |
| GGAGCAGGATCTTGTCGTGG+AGG | + | chr3.1:62779573-62779592 | MS.gene28995:intron | 60.0% | |
| AGCCGCGTAGGTAGCTCGGT+TGG | - | chr3.1:62778124-62778143 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 62777284 | 62780692 | 62777284 | ID=MS.gene28995 |
| chr3.1 | mRNA | 62777284 | 62780692 | 62777284 | ID=MS.gene28995.t1;Parent=MS.gene28995 |
| chr3.1 | exon | 62777284 | 62777427 | 62777284 | ID=MS.gene28995.t1.exon1;Parent=MS.gene28995.t1 |
| chr3.1 | CDS | 62777284 | 62777427 | 62777284 | ID=cds.MS.gene28995.t1;Parent=MS.gene28995.t1 |
| chr3.1 | exon | 62777504 | 62777599 | 62777504 | ID=MS.gene28995.t1.exon2;Parent=MS.gene28995.t1 |
| chr3.1 | CDS | 62777504 | 62777599 | 62777504 | ID=cds.MS.gene28995.t1;Parent=MS.gene28995.t1 |
| chr3.1 | exon | 62778301 | 62778387 | 62778301 | ID=MS.gene28995.t1.exon3;Parent=MS.gene28995.t1 |
| chr3.1 | CDS | 62778301 | 62778387 | 62778301 | ID=cds.MS.gene28995.t1;Parent=MS.gene28995.t1 |
| chr3.1 | exon | 62778755 | 62778851 | 62778755 | ID=MS.gene28995.t1.exon4;Parent=MS.gene28995.t1 |
| chr3.1 | CDS | 62778755 | 62778851 | 62778755 | ID=cds.MS.gene28995.t1;Parent=MS.gene28995.t1 |
| chr3.1 | exon | 62778931 | 62778970 | 62778931 | ID=MS.gene28995.t1.exon5;Parent=MS.gene28995.t1 |
| chr3.1 | CDS | 62778931 | 62778970 | 62778931 | ID=cds.MS.gene28995.t1;Parent=MS.gene28995.t1 |
| chr3.1 | exon | 62779059 | 62779133 | 62779059 | ID=MS.gene28995.t1.exon6;Parent=MS.gene28995.t1 |
| chr3.1 | CDS | 62779059 | 62779133 | 62779059 | ID=cds.MS.gene28995.t1;Parent=MS.gene28995.t1 |
| chr3.1 | exon | 62779377 | 62779464 | 62779377 | ID=MS.gene28995.t1.exon7;Parent=MS.gene28995.t1 |
| chr3.1 | CDS | 62779377 | 62779464 | 62779377 | ID=cds.MS.gene28995.t1;Parent=MS.gene28995.t1 |
| chr3.1 | exon | 62779580 | 62779647 | 62779580 | ID=MS.gene28995.t1.exon8;Parent=MS.gene28995.t1 |
| chr3.1 | CDS | 62779580 | 62779647 | 62779580 | ID=cds.MS.gene28995.t1;Parent=MS.gene28995.t1 |
| chr3.1 | exon | 62780638 | 62780692 | 62780638 | ID=MS.gene28995.t1.exon9;Parent=MS.gene28995.t1 |
| chr3.1 | CDS | 62780638 | 62780692 | 62780638 | ID=cds.MS.gene28995.t1;Parent=MS.gene28995.t1 |
| Gene Sequence |
| Protein sequence |
