Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29755.t1 | XP_003616826.1 | 94.9 | 373 | 19 | 0 | 1 | 373 | 25 | 397 | 2.20E-190 | 674.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29755.t1 | Q9SF32 | 29.7 | 229 | 140 | 6 | 29 | 244 | 60 | 280 | 2.8e-08 | 61.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29755.t1 | G7K7F4 | 94.9 | 373 | 19 | 0 | 1 | 373 | 25 | 397 | 1.6e-190 | 674.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene29755 | 0.827857 | 1.24E-54 | -1.69E-46 |
| MS.gene050689 | MS.gene29755 | 0.815683 | 8.16E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene29755 | 0.845185 | 4.75E-59 | -1.69E-46 |
| MS.gene051328 | MS.gene29755 | 0.815376 | 9.54E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene29755 | 0.801484 | 8.81E-49 | -1.69E-46 |
| MS.gene051850 | MS.gene29755 | 0.801066 | 1.07E-48 | -1.69E-46 |
| MS.gene051885 | MS.gene29755 | 0.815732 | 7.95E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene29755 | 0.827811 | 1.27E-54 | -1.69E-46 |
| MS.gene052516 | MS.gene29755 | 0.812841 | 3.46E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene29755 | 0.817094 | 3.94E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene29755 | 0.847308 | 1.26E-59 | -1.69E-46 |
| MS.gene053581 | MS.gene29755 | 0.849607 | 2.90E-60 | -1.69E-46 |
| MS.gene054584 | MS.gene29755 | 0.835728 | 1.42E-56 | -1.69E-46 |
| MS.gene055465 | MS.gene29755 | 0.828559 | 8.41E-55 | -1.69E-46 |
| MS.gene055466 | MS.gene29755 | 0.827456 | 1.55E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene29755 | 0.824734 | 6.88E-54 | -1.69E-46 |
| MS.gene055469 | MS.gene29755 | 0.826581 | 2.51E-54 | -1.69E-46 |
| MS.gene055537 | MS.gene29755 | 0.826963 | 2.03E-54 | -1.69E-46 |
| MS.gene055580 | MS.gene29755 | -0.844173 | 8.90E-59 | -1.69E-46 |
| MS.gene055890 | MS.gene29755 | 0.809064 | 2.28E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene29755 | 0.835381 | 1.73E-56 | -1.69E-46 |
| MS.gene056043 | MS.gene29755 | -0.844896 | 5.69E-59 | -1.69E-46 |
| MS.gene058852 | MS.gene29755 | 0.801361 | 9.34E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene29755 | 0.825894 | 3.65E-54 | -1.69E-46 |
| MS.gene060194 | MS.gene29755 | 0.806858 | 6.71E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene29755 | 0.825714 | 4.03E-54 | -1.69E-46 |
| MS.gene060884 | MS.gene29755 | 0.813926 | 2.00E-51 | -1.69E-46 |
| MS.gene060886 | MS.gene29755 | 0.805809 | 1.12E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29755.t1 | MTR_5g084680 | 94.906 | 373 | 19 | 0 | 1 | 373 | 25 | 397 | 0.0 | 731 |
| MS.gene29755.t1 | MTR_6g033415 | 30.000 | 170 | 100 | 4 | 80 | 234 | 106 | 271 | 5.08e-11 | 64.3 |
| MS.gene29755.t1 | MTR_7g100790 | 31.176 | 170 | 96 | 5 | 80 | 234 | 107 | 270 | 7.47e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29755.t1 | AT5G35670 | 39.086 | 394 | 160 | 11 | 2 | 334 | 27 | 401 | 1.40e-67 | 220 |
| MS.gene29755.t1 | AT3G09710 | 30.317 | 221 | 133 | 6 | 35 | 242 | 66 | 278 | 1.19e-13 | 72.4 |
| MS.gene29755.t1 | AT3G52290 | 32.948 | 173 | 101 | 4 | 80 | 241 | 107 | 275 | 1.97e-13 | 71.6 |
| MS.gene29755.t1 | AT2G26410 | 34.637 | 179 | 96 | 6 | 80 | 242 | 147 | 320 | 2.75e-13 | 71.6 |
| MS.gene29755.t1 | AT2G26410 | 34.637 | 179 | 96 | 6 | 80 | 242 | 147 | 320 | 2.75e-13 | 71.6 |
Find 38 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATTTGTTGAGTGATAA+AGG | 0.252466 | 5.3:+68471774 | MS.gene29755:CDS |
| TGCTTCTTCATTGAATGATT+TGG | 0.260584 | 5.3:-68471856 | None:intergenic |
| AATGATTTGGAGTTTGAATT+TGG | 0.314828 | 5.3:-68471843 | None:intergenic |
| ACAAGATTCTTAGATGCTTC+TGG | 0.335180 | 5.3:+68473715 | MS.gene29755:CDS |
| GTCTTGCTTATATCTTGCTT+TGG | 0.338818 | 5.3:-68474684 | None:intergenic |
| GGCTTATGCTTTCTCACAAC+AGG | 0.367408 | 5.3:+68473339 | MS.gene29755:CDS |
| GACACCATAAGCTCAGAAAA+TGG | 0.367645 | 5.3:+68472589 | MS.gene29755:CDS |
| TTAAAATTAGTCTTTGTTGC+TGG | 0.390747 | 5.3:-68473838 | None:intergenic |
| AAGTCCAGATAGAAAATCTA+TGG | 0.396813 | 5.3:+68472639 | MS.gene29755:CDS |
| ACTCAACAAATCTTCTTGTA+TGG | 0.397260 | 5.3:-68471766 | None:intergenic |
| CGAAAATAGAAGATGGATAT+CGG | 0.405240 | 5.3:+68471650 | MS.gene29755:CDS |
| ATCAGCATATAGAAGTTTCA+AGG | 0.419115 | 5.3:+68471896 | MS.gene29755:CDS |
| TCATCATGAAATTGATAACT+TGG | 0.439924 | 5.3:-68473895 | None:intergenic |
| AACTAAAGCAATAAAGCAAA+AGG | 0.480169 | 5.3:+68472759 | MS.gene29755:CDS |
| ACATCAGTTGAAGTACAAAC+AGG | 0.491365 | 5.3:+68472664 | MS.gene29755:CDS |
| ATTCTTCCGAAAATAGAAGA+TGG | 0.516203 | 5.3:+68471643 | MS.gene29755:CDS |
| GTAGCAATGTTTCGAAAATG+AGG | 0.518133 | 5.3:+68473272 | MS.gene29755:CDS |
| AATGAGGATGCAAGACAGAA+TGG | 0.526107 | 5.3:+68473288 | MS.gene29755:CDS |
| TTTCATACTGCTTCATCGCA+TGG | 0.540116 | 5.3:-68473657 | None:intergenic |
| ACATGGAACAAAATATGAGC+TGG | 0.546448 | 5.3:+68473578 | MS.gene29755:CDS |
| TTTAAATGAGAAAACTTCAG+TGG | 0.556481 | 5.3:-68472692 | None:intergenic |
| TGAGCTGGAGTTGGCTCGAA+AGG | 0.559271 | 5.3:+68473593 | MS.gene29755:CDS |
| AACAAAATATGAGCTGGAGT+TGG | 0.563437 | 5.3:+68473584 | MS.gene29755:CDS |
| TGGCTCAAACAATGCTAACA+AGG | 0.571871 | 5.3:+68474647 | MS.gene29755:CDS |
| AAGCTAGGAGAACTGTGTCT+AGG | 0.575861 | 5.3:+68473860 | MS.gene29755:CDS |
| ACAGAATGGAAGCAGCTACA+AGG | 0.585908 | 5.3:+68473302 | MS.gene29755:CDS |
| TCGAAAGGTGGATGGCAACT+CGG | 0.586917 | 5.3:+68473608 | MS.gene29755:CDS |
| ATTTCATGATGAACATACAA+AGG | 0.587203 | 5.3:+68473906 | MS.gene29755:CDS |
| AAGCTGAATCTTCTTCTGCA+AGG | 0.601371 | 5.3:-68471710 | None:intergenic |
| TACAAGGAGAGAAAGAGCAT+TGG | 0.605289 | 5.3:+68473318 | MS.gene29755:CDS |
| CTAGGAGAACTGTGTCTAGG+AGG | 0.606464 | 5.3:+68473863 | MS.gene29755:CDS |
| GAGTTGGCTCGAAAGGTGGA+TGG | 0.611180 | 5.3:+68473600 | MS.gene29755:CDS |
| GAATAGTTATCAAAATGAAG+TGG | 0.611561 | 5.3:-68473775 | None:intergenic |
| TTACAGGTAAGCATGAAAGA+TGG | 0.615493 | 5.3:+68474627 | MS.gene29755:intron |
| GCTGGAGTTGGCTCGAAAGG+TGG | 0.621737 | 5.3:+68473596 | MS.gene29755:CDS |
| TCGGTTAAATCATACTTGTG+TGG | 0.650715 | 5.3:+68471669 | MS.gene29755:CDS |
| AGATTCTTAGATGCTTCTGG+TGG | 0.671963 | 5.3:+68473718 | MS.gene29755:CDS |
| ACTAGCAAAACATAACAACA+TGG | 0.703514 | 5.3:+68473561 | MS.gene29755:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTATATTTATAATA+TGG | - | chr5.3:68474602-68474621 | None:intergenic | 0.0% |
| !!! | AAATATTTTTAAAAATCCAA+CGG | + | chr5.3:68472158-68472177 | MS.gene29755:intron | 10.0% |
| !!! | AATTAAATTCTTTAAAAAGA+TGG | + | chr5.3:68472230-68472249 | MS.gene29755:intron | 10.0% |
| !!! | TATCATTTATATAACTTTTA+TGG | + | chr5.3:68472118-68472137 | MS.gene29755:intron | 10.0% |
| !! | GTATAATTAATTAAGAAAAG+TGG | - | chr5.3:68473100-68473119 | None:intergenic | 15.0% |
| !! | TATTAATTGATTACTTCAAT+TGG | + | chr5.3:68471932-68471951 | MS.gene29755:intron | 15.0% |
| !! | TTATATTTATAATATGGTAG+TGG | - | chr5.3:68474596-68474615 | None:intergenic | 15.0% |
| !!! | AAATACTAATTTTTTATGCA+TGG | - | chr5.3:68472508-68472527 | None:intergenic | 15.0% |
| !!! | ATATAACTTTTATGGTAAAT+AGG | + | chr5.3:68472126-68472145 | MS.gene29755:intron | 15.0% |
| !!! | TAATAACATTGAAATTTTTC+AGG | + | chr5.3:68473225-68473244 | MS.gene29755:intron | 15.0% |
| !!! | TATAATTTTTATGTTGTTAC+AGG | + | chr5.3:68474611-68474630 | MS.gene29755:intron | 15.0% |
| !! | TTCATAGTGTAATATAAACA+AGG | + | chr5.3:68474238-68474257 | MS.gene29755:intron | 20.0% |
| !!! | AAGAAAAAGGTTTTAAATTG+TGG | - | chr5.3:68472383-68472402 | None:intergenic | 20.0% |
| !!! | AATCTATTTTTGAAACCTTT+TGG | - | chr5.3:68472044-68472063 | None:intergenic | 20.0% |
| !!! | ATAAAGTTTAAAGTATGTTC+TGG | - | chr5.3:68472927-68472946 | None:intergenic | 20.0% |
| !!! | TAAATGATAGTAATTTGTGA+TGG | - | chr5.3:68472107-68472126 | None:intergenic | 20.0% |
| !!! | TAGATAGTACATTATGTTTT+TGG | + | chr5.3:68473973-68473992 | MS.gene29755:intron | 20.0% |
| !!! | TGACAATGTAAAATGTTTTA+AGG | - | chr5.3:68472082-68472101 | None:intergenic | 20.0% |
| ! | AAATATGTAAAGAAGATGCT+TGG | + | chr5.3:68473009-68473028 | MS.gene29755:intron | 25.0% |
| ! | AACTAAAGCAATAAAGCAAA+AGG | + | chr5.3:68472759-68472778 | MS.gene29755:CDS | 25.0% |
| ! | ACTTAGACGAAGTATAATAT+AGG | + | chr5.3:68473168-68473187 | MS.gene29755:intron | 25.0% |
| ! | ATCAGAAAATATTAGAAGAG+TGG | + | chr5.3:68472982-68473001 | MS.gene29755:intron | 25.0% |
| ! | ATTTCATGATGAACATACAA+AGG | + | chr5.3:68473906-68473925 | MS.gene29755:CDS | 25.0% |
| ! | CAAAAAAAATCTTGATGTCA+TGG | + | chr5.3:68474341-68474360 | MS.gene29755:intron | 25.0% |
| ! | GAATAGTTATCAAAATGAAG+TGG | - | chr5.3:68473778-68473797 | None:intergenic | 25.0% |
| ! | GTAAAAAATCTTCACATTGT+CGG | + | chr5.3:68472199-68472218 | MS.gene29755:intron | 25.0% |
| ! | TTTAAATGAGAAAACTTCAG+TGG | - | chr5.3:68472695-68472714 | None:intergenic | 25.0% |
| !! | AAACTTTAAAGGTAAACTCA+TGG | - | chr5.3:68472011-68472030 | None:intergenic | 25.0% |
| !! | AATGATTTGGAGTTTGAATT+TGG | - | chr5.3:68471846-68471865 | None:intergenic | 25.0% |
| !! | ACTGAAGTTTTCTCATTTAA+AGG | + | chr5.3:68472694-68472713 | MS.gene29755:CDS | 25.0% |
| !! | GATCTATTTAAAACTAGTTG+AGG | - | chr5.3:68474014-68474033 | None:intergenic | 25.0% |
| !! | TCATCATGAAATTGATAACT+TGG | - | chr5.3:68473898-68473917 | None:intergenic | 25.0% |
| !!! | AACCTTTTTAGAGACTAAAT+CGG | - | chr5.3:68473411-68473430 | None:intergenic | 25.0% |
| !!! | AATTTGAACCAACTTTTTCT+TGG | - | chr5.3:68471987-68472006 | None:intergenic | 25.0% |
| !!! | CAAAGACTAATTTTAAAGCT+AGG | + | chr5.3:68473845-68473864 | MS.gene29755:CDS | 25.0% |
| !!! | CTTGAATTTTAAAACATTGC+TGG | - | chr5.3:68473040-68473059 | None:intergenic | 25.0% |
| !!! | TGAAATTTTTCAGGAAGATT+GGG | + | chr5.3:68473234-68473253 | MS.gene29755:intron | 25.0% |
| !!! | TTAAAATTAGTCTTTGTTGC+TGG | - | chr5.3:68473841-68473860 | None:intergenic | 25.0% |
| !!! | TTGAAATTTTTCAGGAAGAT+TGG | + | chr5.3:68473233-68473252 | MS.gene29755:intron | 25.0% |
| AAGTCCAGATAGAAAATCTA+TGG | + | chr5.3:68472639-68472658 | MS.gene29755:CDS | 30.0% | |
| ACACATTGATCTCAAGAAAA+AGG | - | chr5.3:68472396-68472415 | None:intergenic | 30.0% | |
| ACTAGCAAAACATAACAACA+TGG | + | chr5.3:68473561-68473580 | MS.gene29755:CDS | 30.0% | |
| ACTCAACAAATCTTCTTGTA+TGG | - | chr5.3:68471769-68471788 | None:intergenic | 30.0% | |
| AGACGAAGTATAATATAGGA+CGG | + | chr5.3:68473172-68473191 | MS.gene29755:intron | 30.0% | |
| ATCAGCATATAGAAGTTTCA+AGG | + | chr5.3:68471896-68471915 | MS.gene29755:CDS | 30.0% | |
| ATTCTTCCGAAAATAGAAGA+TGG | + | chr5.3:68471643-68471662 | MS.gene29755:CDS | 30.0% | |
| CAAAAAAGTCTGGTCAAATA+CGG | - | chr5.3:68472344-68472363 | None:intergenic | 30.0% | |
| CGAAAATAGAAGATGGATAT+CGG | + | chr5.3:68471650-68471669 | MS.gene29755:CDS | 30.0% | |
| CGTGATATTACAAAAAAGTC+TGG | - | chr5.3:68472354-68472373 | None:intergenic | 30.0% | |
| CTTGCAATAACTATGTCATT+AGG | - | chr5.3:68474522-68474541 | None:intergenic | 30.0% | |
| TGCTTCTTCATTGAATGATT+TGG | - | chr5.3:68471859-68471878 | None:intergenic | 30.0% | |
| TTCATAAAACATCCAAGTCA+TGG | + | chr5.3:68473948-68473967 | MS.gene29755:intron | 30.0% | |
| TTGAATGTAACTACATGTGT+TGG | - | chr5.3:68474154-68474173 | None:intergenic | 30.0% | |
| TTGACACATAGTAAATTCGA+GGG | + | chr5.3:68473459-68473478 | MS.gene29755:intron | 30.0% | |
| TTTGACACATAGTAAATTCG+AGG | + | chr5.3:68473458-68473477 | MS.gene29755:intron | 30.0% | |
| ! | AACCGATTTAGTCTCTAAAA+AGG | + | chr5.3:68473406-68473425 | MS.gene29755:intron | 30.0% |
| ! | CGATATCCATCTTCTATTTT+CGG | - | chr5.3:68471652-68471671 | None:intergenic | 30.0% |
| ! | TATTGTGTTAGTGTCTTGTT+CGG | + | chr5.3:68474194-68474213 | MS.gene29755:intron | 30.0% |
| !! | GAAGATTTGTTGAGTGATAA+AGG | + | chr5.3:68471774-68471793 | MS.gene29755:CDS | 30.0% |
| !!! | GTAAAATGTTTTAAGGTGCA+TGG | - | chr5.3:68472075-68472094 | None:intergenic | 30.0% |
| AAATCTTGATGTCATGGATC+TGG | + | chr5.3:68474347-68474366 | MS.gene29755:intron | 35.0% | |
| AACAAAATATGAGCTGGAGT+TGG | + | chr5.3:68473584-68473603 | MS.gene29755:CDS | 35.0% | |
| AATGTAACTACATGTGTTGG+TGG | - | chr5.3:68474151-68474170 | None:intergenic | 35.0% | |
| AATTAAGAAAAGTGGCCTAG+TGG | - | chr5.3:68473092-68473111 | None:intergenic | 35.0% | |
| ACAAGATTCTTAGATGCTTC+TGG | + | chr5.3:68473715-68473734 | MS.gene29755:CDS | 35.0% | |
| ACATCAGTTGAAGTACAAAC+AGG | + | chr5.3:68472664-68472683 | MS.gene29755:CDS | 35.0% | |
| ACATGGAACAAAATATGAGC+TGG | + | chr5.3:68473578-68473597 | MS.gene29755:CDS | 35.0% | |
| ACCTCATTCCAAGAAAAAGT+TGG | + | chr5.3:68471976-68471995 | MS.gene29755:intron | 35.0% | |
| CATGCTACATATTTCAGTTG+AGG | + | chr5.3:68472554-68472573 | MS.gene29755:intron | 35.0% | |
| GAAGTATAATATAGGACGGA+GGG | + | chr5.3:68473176-68473195 | MS.gene29755:intron | 35.0% | |
| GCATCACAAGCAAACTTTAA+AGG | - | chr5.3:68472022-68472041 | None:intergenic | 35.0% | |
| GTAGCAATGTTTCGAAAATG+AGG | + | chr5.3:68473272-68473291 | MS.gene29755:CDS | 35.0% | |
| GTCTTGCTTATATCTTGCTT+TGG | - | chr5.3:68474687-68474706 | None:intergenic | 35.0% | |
| TATTGATGTGACCACAATTG+TGG | + | chr5.3:68474298-68474317 | MS.gene29755:intron | 35.0% | |
| TCGGTTAAATCATACTTGTG+TGG | + | chr5.3:68471669-68471688 | MS.gene29755:CDS | 35.0% | |
| TGACATATACTAGCAAGAGA+AGG | - | chr5.3:68474572-68474591 | None:intergenic | 35.0% | |
| TGGAAGTTTAATCTTCCACT+AGG | + | chr5.3:68473074-68473093 | MS.gene29755:intron | 35.0% | |
| TTACAGGTAAGCATGAAAGA+TGG | + | chr5.3:68474627-68474646 | MS.gene29755:intron | 35.0% | |
| TTATAATCACAACGCAGTTG+CGG | - | chr5.3:68472301-68472320 | None:intergenic | 35.0% | |
| ! | AGAAGGAATATAAGAGCACA+TGG | - | chr5.3:68474555-68474574 | None:intergenic | 35.0% |
| ! | AGTCTCTAAAAAGGTTCATG+AGG | + | chr5.3:68473415-68473434 | MS.gene29755:intron | 35.0% |
| ! | GTAGCCATAGATTTTCTATC+TGG | - | chr5.3:68472646-68472665 | None:intergenic | 35.0% |
| ! | TATTTTACAACCGTTGTCGA+GGG | - | chr5.3:68473499-68473518 | None:intergenic | 35.0% |
| ! | TCTGAACTAGCACATGATTT+TGG | + | chr5.3:68472810-68472829 | MS.gene29755:intron | 35.0% |
| ! | TTCAAGTGTGATGATGATGT+TGG | + | chr5.3:68473054-68473073 | MS.gene29755:intron | 35.0% |
| ! | TTCACCATTTTCTGAGCTTA+TGG | - | chr5.3:68472596-68472615 | None:intergenic | 35.0% |
| ! | TTTACAACAGTTTTCAGCAC+AGG | + | chr5.3:68472731-68472750 | MS.gene29755:CDS | 35.0% |
| !! | ACCAACTTTTTCTTGGAATG+AGG | - | chr5.3:68471980-68471999 | None:intergenic | 35.0% |
| !! | CTCGACTGTTGATTTGAAAT+CGG | + | chr5.3:68474479-68474498 | MS.gene29755:intron | 35.0% |
| AAGCTGAATCTTCTTCTGCA+AGG | - | chr5.3:68471713-68471732 | None:intergenic | 40.0% | |
| AATGAGGATGCAAGACAGAA+TGG | + | chr5.3:68473288-68473307 | MS.gene29755:CDS | 40.0% | |
| AATTCTGATTCCCTCGACAA+CGG | + | chr5.3:68473486-68473505 | MS.gene29755:intron | 40.0% | |
| AGATTATAACTGCGTCGTTG+GGG | + | chr5.3:68472263-68472282 | MS.gene29755:intron | 40.0% | |
| AGATTCTTAGATGCTTCTGG+TGG | + | chr5.3:68473718-68473737 | MS.gene29755:CDS | 40.0% | |
| CGAAGTATAATATAGGACGG+AGG | + | chr5.3:68473175-68473194 | MS.gene29755:intron | 40.0% | |
| CGACGCAGTTATAATCTCAA+TGG | - | chr5.3:68472260-68472279 | None:intergenic | 40.0% | |
| GACACCATAAGCTCAGAAAA+TGG | + | chr5.3:68472589-68472608 | MS.gene29755:CDS | 40.0% | |
| GAGATTATAACTGCGTCGTT+GGG | + | chr5.3:68472262-68472281 | MS.gene29755:intron | 40.0% | |
| GGTGAAGAAAAAGAGAGTTG+TGG | + | chr5.3:68473739-68473758 | MS.gene29755:CDS | 40.0% | |
| GTACTATCTAAGCCATGACT+TGG | - | chr5.3:68473963-68473982 | None:intergenic | 40.0% | |
| TCTTGAGATCAATGTGTGTG+TGG | + | chr5.3:68472399-68472418 | MS.gene29755:intron | 40.0% | |
| TGAGATTATAACTGCGTCGT+TGG | + | chr5.3:68472261-68472280 | MS.gene29755:intron | 40.0% | |
| TGGCTCAAACAATGCTAACA+AGG | + | chr5.3:68474647-68474666 | MS.gene29755:CDS | 40.0% | |
| TGTCAATCAATCGTAACCGT+TGG | - | chr5.3:68472177-68472196 | None:intergenic | 40.0% | |
| TTTCATACTGCTTCATCGCA+TGG | - | chr5.3:68473660-68473679 | None:intergenic | 40.0% | |
| ! | AGTTTGCTTGTGATGCCAAA+AGG | + | chr5.3:68472026-68472045 | MS.gene29755:intron | 40.0% |
| ! | GTATTTTACAACCGTTGTCG+AGG | - | chr5.3:68473500-68473519 | None:intergenic | 40.0% |
| ! | TACAAGGAGAGAAAGAGCAT+TGG | + | chr5.3:68473318-68473337 | MS.gene29755:CDS | 40.0% |
| AAGCTAGGAGAACTGTGTCT+AGG | + | chr5.3:68473860-68473879 | MS.gene29755:CDS | 45.0% | |
| AAGGTTGTAGACCACGATTG+TGG | + | chr5.3:68474257-68474276 | MS.gene29755:intron | 45.0% | |
| ACAGAATGGAAGCAGCTACA+AGG | + | chr5.3:68473302-68473321 | MS.gene29755:CDS | 45.0% | |
| CCACAACATGACCACAATTG+TGG | - | chr5.3:68474312-68474331 | None:intergenic | 45.0% | |
| CCACAATTGTGGTCATGTTG+TGG | + | chr5.3:68474309-68474328 | MS.gene29755:intron | 45.0% | |
| CTACGTAGAGTTCCAATTGC+AGG | - | chr5.3:68474377-68474396 | None:intergenic | 45.0% | |
| CTGGTCAAATACGGTTGACA+TGG | - | chr5.3:68472335-68472354 | None:intergenic | 45.0% | |
| GGATCTGGATTACCTGCAAT+TGG | + | chr5.3:68474362-68474381 | MS.gene29755:intron | 45.0% | |
| GGCTTATGCTTTCTCACAAC+AGG | + | chr5.3:68473339-68473358 | MS.gene29755:CDS | 45.0% | |
| TATTCGTAGCTGCAACAACG+AGG | - | chr5.3:68473527-68473546 | None:intergenic | 45.0% | |
| TCACGAAACAACCACAATCG+TGG | - | chr5.3:68474271-68474290 | None:intergenic | 45.0% | |
| !! | AATTATTATAAAATAAAACT+TGG | + | chr5.3:68472844-68472863 | MS.gene29755:intron | 5.0% |
| CTAGGAGAACTGTGTCTAGG+AGG | + | chr5.3:68473863-68473882 | MS.gene29755:CDS | 50.0% | |
| TCGAAAGGTGGATGGCAACT+CGG | + | chr5.3:68473608-68473627 | MS.gene29755:CDS | 50.0% | |
| CACACGTAGTCACACTCACG+TGG | - | chr5.3:68474128-68474147 | None:intergenic | 55.0% | |
| ! | GACGGAGGGAGTGTGACATA+AGG | + | chr5.3:68473190-68473209 | MS.gene29755:intron | 55.0% |
| !! | GAGTTGGCTCGAAAGGTGGA+TGG | + | chr5.3:68473600-68473619 | MS.gene29755:CDS | 55.0% |
| !! | TGAGCTGGAGTTGGCTCGAA+AGG | + | chr5.3:68473593-68473612 | MS.gene29755:CDS | 55.0% |
| !! | GCTGGAGTTGGCTCGAAAGG+TGG | + | chr5.3:68473596-68473615 | MS.gene29755:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 68471633 | 68474755 | 68471633 | ID=MS.gene29755 |
| chr5.3 | mRNA | 68471633 | 68474755 | 68471633 | ID=MS.gene29755.t1;Parent=MS.gene29755 |
| chr5.3 | exon | 68471633 | 68471917 | 68471633 | ID=MS.gene29755.t1.exon1;Parent=MS.gene29755.t1 |
| chr5.3 | CDS | 68471633 | 68471917 | 68471633 | ID=cds.MS.gene29755.t1;Parent=MS.gene29755.t1 |
| chr5.3 | exon | 68472571 | 68472780 | 68472571 | ID=MS.gene29755.t1.exon2;Parent=MS.gene29755.t1 |
| chr5.3 | CDS | 68472571 | 68472780 | 68472571 | ID=cds.MS.gene29755.t1;Parent=MS.gene29755.t1 |
| chr5.3 | exon | 68473247 | 68473360 | 68473247 | ID=MS.gene29755.t1.exon3;Parent=MS.gene29755.t1 |
| chr5.3 | CDS | 68473247 | 68473360 | 68473247 | ID=cds.MS.gene29755.t1;Parent=MS.gene29755.t1 |
| chr5.3 | exon | 68473538 | 68473927 | 68473538 | ID=MS.gene29755.t1.exon4;Parent=MS.gene29755.t1 |
| chr5.3 | CDS | 68473538 | 68473927 | 68473538 | ID=cds.MS.gene29755.t1;Parent=MS.gene29755.t1 |
| chr5.3 | exon | 68474633 | 68474755 | 68474633 | ID=MS.gene29755.t1.exon5;Parent=MS.gene29755.t1 |
| chr5.3 | CDS | 68474633 | 68474755 | 68474633 | ID=cds.MS.gene29755.t1;Parent=MS.gene29755.t1 |
| Gene Sequence |
| Protein sequence |
