Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30479.t1 | XP_013452478.1 | 96.4 | 364 | 13 | 0 | 76 | 439 | 171 | 534 | 2.90E-202 | 714.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30479.t1 | Q9P7G4 | 40.8 | 179 | 95 | 4 | 257 | 426 | 146 | 322 | 9.8e-29 | 129.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30479.t1 | A0A072UAP6 | 96.4 | 364 | 13 | 0 | 76 | 439 | 171 | 534 | 2.1e-202 | 714.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049983 | MS.gene30479 | 0.800302 | 1.54E-48 | -1.69E-46 |
| MS.gene050654 | MS.gene30479 | 0.818225 | 2.19E-52 | -1.69E-46 |
| MS.gene050941 | MS.gene30479 | 0.807124 | 5.89E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene30479 | 0.814567 | 1.44E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene30479 | 0.811413 | 7.09E-51 | -1.69E-46 |
| MS.gene051676 | MS.gene30479 | 0.801131 | 1.04E-48 | -1.69E-46 |
| MS.gene052342 | MS.gene30479 | 0.804048 | 2.60E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene30479 | 0.805311 | 1.42E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene30479 | 0.801266 | 9.76E-49 | -1.69E-46 |
| MS.gene05350 | MS.gene30479 | 0.801866 | 7.35E-49 | -1.69E-46 |
| MS.gene054772 | MS.gene30479 | 0.804809 | 1.81E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene30479 | 0.837594 | 4.74E-57 | -1.69E-46 |
| MS.gene056181 | MS.gene30479 | 0.81496 | 1.18E-51 | -1.69E-46 |
| MS.gene056787 | MS.gene30479 | 0.801467 | 8.88E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene30479 | 0.805914 | 1.06E-49 | -1.69E-46 |
| MS.gene058708 | MS.gene30479 | -0.81654 | 5.25E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene30479 | 0.839854 | 1.24E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene30479 | 0.828168 | 1.04E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30479.t1 | MTR_6g463380 | 94.989 | 439 | 22 | 0 | 1 | 439 | 96 | 534 | 0.0 | 866 |
| MS.gene30479.t1 | MTR_3g006860 | 92.255 | 439 | 34 | 0 | 1 | 439 | 92 | 530 | 0.0 | 838 |
| MS.gene30479.t1 | MTR_6g463380 | 94.150 | 359 | 21 | 0 | 1 | 359 | 96 | 454 | 0.0 | 706 |
| MS.gene30479.t1 | MTR_6g463380 | 94.398 | 357 | 20 | 0 | 1 | 357 | 96 | 452 | 0.0 | 703 |
| MS.gene30479.t1 | MTR_6g079410 | 48.998 | 449 | 137 | 12 | 45 | 431 | 46 | 464 | 7.11e-127 | 375 |
| MS.gene30479.t1 | MTR_6g061650 | 53.191 | 329 | 105 | 8 | 109 | 433 | 32 | 315 | 3.91e-104 | 312 |
| MS.gene30479.t1 | MTR_6g006850 | 36.335 | 322 | 155 | 7 | 122 | 436 | 29 | 307 | 1.02e-54 | 184 |
| MS.gene30479.t1 | MTR_1g014390 | 46.701 | 197 | 75 | 3 | 237 | 430 | 119 | 288 | 8.36e-49 | 168 |
| MS.gene30479.t1 | MTR_6g006710 | 33.887 | 301 | 118 | 6 | 142 | 436 | 68 | 293 | 7.03e-43 | 153 |
| MS.gene30479.t1 | MTR_1g029560 | 42.157 | 204 | 93 | 5 | 239 | 436 | 18 | 202 | 6.60e-41 | 145 |
| MS.gene30479.t1 | MTR_1g012010 | 45.833 | 120 | 62 | 1 | 240 | 359 | 124 | 240 | 1.89e-25 | 104 |
| MS.gene30479.t1 | MTR_1g012015 | 60.000 | 75 | 27 | 1 | 359 | 430 | 23 | 97 | 3.91e-24 | 96.7 |
| MS.gene30479.t1 | MTR_7g025575 | 59.091 | 88 | 29 | 2 | 358 | 439 | 13 | 99 | 5.13e-24 | 96.7 |
| MS.gene30479.t1 | MTR_6g080120 | 68.000 | 50 | 14 | 1 | 358 | 407 | 1 | 48 | 1.45e-13 | 65.9 |
| MS.gene30479.t1 | MTR_6g079950 | 41.791 | 67 | 38 | 1 | 370 | 436 | 1 | 66 | 5.24e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30479.t1 | AT5G51740 | 57.604 | 434 | 158 | 6 | 10 | 439 | 31 | 442 | 4.61e-175 | 497 |
| MS.gene30479.t1 | AT5G51740 | 57.604 | 434 | 158 | 6 | 10 | 439 | 74 | 485 | 1.09e-174 | 498 |
| MS.gene30479.t1 | AT5G51740 | 53.561 | 351 | 139 | 4 | 10 | 357 | 74 | 403 | 8.21e-129 | 378 |
Find 98 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAAGAGGTTAGGGAAAA+TGG | 0.112500 | 6.4:+41221609 | MS.gene30479:CDS |
| TCCAAAGGTGTTAGCTTTAA+TGG | 0.157644 | 6.4:+41221664 | MS.gene30479:CDS |
| TGGACTGAATTGGGAGATTT+TGG | 0.167567 | 6.4:+41222308 | MS.gene30479:CDS |
| TGTCAAGGTGGTAACTTTAA+TGG | 0.209828 | 6.4:+41221565 | MS.gene30479:CDS |
| TTGAGATAAATAAGAATATT+GGG | 0.260342 | 6.4:+41221635 | MS.gene30479:CDS |
| TTTGAGATAAATAAGAATAT+TGG | 0.272846 | 6.4:+41221634 | MS.gene30479:CDS |
| ATCCTAACTCTCACACTTTC+AGG | 0.275058 | 6.4:-41222027 | None:intergenic |
| GGATTCTGAAACCAATTCTT+TGG | 0.281604 | 6.4:-41221808 | None:intergenic |
| GCAGAGATAGCAACTATTAT+TGG | 0.282923 | 6.4:+41222420 | MS.gene30479:CDS |
| AAATGTGTTCGCTTCGTATA+AGG | 0.292798 | 6.4:-41221907 | None:intergenic |
| AACCAATTCTTTGGCCCTCT+TGG | 0.319495 | 6.4:-41221799 | None:intergenic |
| TGGTGTTGAAGGATTTCTTT+AGG | 0.322830 | 6.4:+41225442 | MS.gene30479:CDS |
| TCTTCAATTCCTAAGAGGTT+AGG | 0.330856 | 6.4:+41221601 | MS.gene30479:CDS |
| TGGGAAGATAGTCGTGTTTA+CGG | 0.331309 | 6.4:+41222371 | MS.gene30479:CDS |
| CCATCCAAATGCGACGTATA+AGG | 0.337352 | 6.4:-41222288 | None:intergenic |
| CGCATTTGGATGGACTGAAT+TGG | 0.338297 | 6.4:+41222298 | MS.gene30479:CDS |
| CCAAAGGTGTTAGCTTTAAT+GGG | 0.339118 | 6.4:+41221665 | MS.gene30479:CDS |
| GCAACCTTATACGTCGCATT+TGG | 0.340962 | 6.4:+41222284 | MS.gene30479:CDS |
| GACATAGTGTTGACAATATC+AGG | 0.345694 | 6.4:-41222889 | None:intergenic |
| AAGAGATGGAGAAGAGTCTT+GGG | 0.345827 | 6.4:+41221944 | MS.gene30479:CDS |
| ACACTTTCAGGATGCATTGC+AGG | 0.348683 | 6.4:-41222015 | None:intergenic |
| GTCAAGGTGGTAACTTTAAT+GGG | 0.361635 | 6.4:+41221566 | MS.gene30479:CDS |
| AGACTCTTCTCCATCTCTTT+CGG | 0.364887 | 6.4:-41221940 | None:intergenic |
| ATGAGGTTCTTGATGACAAA+TGG | 0.368009 | 6.4:+41222223 | MS.gene30479:CDS |
| AGCCAAGAGGGCCAAAGAAT+TGG | 0.368828 | 6.4:+41221797 | MS.gene30479:CDS |
| AAGAAAACGAGCAGAATTAC+TGG | 0.372401 | 6.4:+41225361 | MS.gene30479:CDS |
| CCCATTAAAGCTAACACCTT+TGG | 0.373919 | 6.4:-41221665 | None:intergenic |
| CTTCAATTCCTAAGAGGTTA+GGG | 0.379836 | 6.4:+41221602 | MS.gene30479:CDS |
| CCTAAGAGGTTAGGGAAAAT+GGG | 0.389385 | 6.4:+41221610 | MS.gene30479:CDS |
| CATCTTCTCAGCACTGTGTC+TGG | 0.400313 | 6.4:-41222812 | None:intergenic |
| GCTTCAGAAAATTCTGTGTT+TGG | 0.406389 | 6.4:+41222123 | MS.gene30479:CDS |
| CATCAAGAACCTCATCTTCC+CGG | 0.407792 | 6.4:-41222215 | None:intergenic |
| AAGGGAAAGTTGGAGGGAAT+TGG | 0.419080 | 6.4:+41222190 | MS.gene30479:CDS |
| GGGAAGATAGTCGTGTTTAC+GGG | 0.423649 | 6.4:+41222372 | MS.gene30479:CDS |
| AGAGAAGGACATGGTGTTGA+AGG | 0.427494 | 6.4:+41225431 | MS.gene30479:CDS |
| GCATTTGGATGGACTGAATT+GGG | 0.433979 | 6.4:+41222299 | MS.gene30479:CDS |
| AGAATTGGTTTCAGAATCCT+AGG | 0.434255 | 6.4:+41221812 | MS.gene30479:CDS |
| ACTGAAAATGAAGGGAAAGT+TGG | 0.438682 | 6.4:+41222180 | MS.gene30479:CDS |
| GTTGAAGAGAGGGTTGAGTA+AGG | 0.449933 | 6.4:+41222074 | MS.gene30479:CDS |
| ACCTAAAGTCTACGAAAAGT+TGG | 0.458356 | 6.4:+41225283 | MS.gene30479:CDS |
| TTTGGTGGTGAAGGATCCTA+TGG | 0.460965 | 6.4:+41222326 | MS.gene30479:CDS |
| TATTTCGCTACTCATCCATC+TGG | 0.461058 | 6.4:+41225338 | MS.gene30479:CDS |
| ATCTAAAAGCTTAGAATCGC+CGG | 0.472748 | 6.4:-41225315 | None:intergenic |
| AAAGAGATGGAGAAGAGTCT+TGG | 0.473631 | 6.4:+41221943 | MS.gene30479:CDS |
| AGAATTACTGGCTCAAGCTC+AGG | 0.477979 | 6.4:+41225373 | MS.gene30479:CDS |
| AATAATTACCTTCTGGAGAA+AGG | 0.480591 | 6.4:-41222931 | None:intergenic |
| CCTTATACGTCGCATTTGGA+TGG | 0.481840 | 6.4:+41222288 | MS.gene30479:CDS |
| AGAAGATGACAAAGAATATG+TGG | 0.484136 | 6.4:+41222827 | MS.gene30479:CDS |
| AAGTTGGAGGGAATTGGCAC+CGG | 0.485472 | 6.4:+41222196 | MS.gene30479:CDS |
| TGAGGTTCTTGATGACAAAT+GGG | 0.495986 | 6.4:+41222224 | MS.gene30479:CDS |
| AATAATAAGAATATTAGAGT+TGG | 0.496382 | 6.4:+41221541 | MS.gene30479:CDS |
| AATCCTAGGCATGTTATGAT+TGG | 0.503650 | 6.4:+41221826 | MS.gene30479:CDS |
| ATCCTGAAAGTGTGAGAGTT+AGG | 0.512578 | 6.4:+41222025 | MS.gene30479:CDS |
| AATGCATTGACTGAAAATGA+AGG | 0.512873 | 6.4:+41222171 | MS.gene30479:CDS |
| ATTGGTGTAGTGGTAGGTTC+TGG | 0.513588 | 6.4:+41221844 | MS.gene30479:CDS |
| CCTAAAGTCTACGAAAAGTT+GGG | 0.514744 | 6.4:+41225284 | MS.gene30479:CDS |
| TTATCGAAGCGTTGAAGAGA+GGG | 0.518421 | 6.4:+41222064 | MS.gene30479:CDS |
| AATATTAGAGTTGGTTGTCA+AGG | 0.519986 | 6.4:+41221550 | MS.gene30479:CDS |
| ACAAATGGGTTCAGAAGAGT+AGG | 0.530526 | 6.4:+41222238 | MS.gene30479:CDS |
| AGTTGGAGGGAATTGGCACC+GGG | 0.532756 | 6.4:+41222197 | MS.gene30479:CDS |
| TGAGATAAATAAGAATATTG+GGG | 0.535578 | 6.4:+41221636 | MS.gene30479:CDS |
| TGCCACACGTGGATCGTAGC+CGG | 0.536111 | 6.4:-41225261 | None:intergenic |
| ATTAGAGTTGGTTGTCAAGG+TGG | 0.541340 | 6.4:+41221553 | MS.gene30479:CDS |
| CTTCCCACCAGGTAAGCAAA+AGG | 0.542507 | 6.4:-41222355 | None:intergenic |
| GATAAATAAGAATATTGGGG+TGG | 0.543034 | 6.4:+41221639 | MS.gene30479:CDS |
| AATATTGGGGTGGGTTCCAA+AGG | 0.550451 | 6.4:+41221649 | MS.gene30479:CDS |
| CTTCTATTAGTTGCATCCGC+CGG | 0.553436 | 6.4:+41225242 | MS.gene30479:CDS |
| TACGGCTACCTTTCTCCAGA+AGG | 0.558879 | 6.4:+41222923 | MS.gene30479:CDS |
| GAAAATGAAGGGAAAGTTGG+AGG | 0.559808 | 6.4:+41222183 | MS.gene30479:CDS |
| GAGCGAGTTTGAGAAGATGA+AGG | 0.561104 | 6.4:+41221969 | MS.gene30479:CDS |
| AAGCAAAAGGCATTAACCAT+AGG | 0.561244 | 6.4:-41222342 | None:intergenic |
| ATAAATAAGAATATTGGGGT+GGG | 0.563572 | 6.4:+41221640 | MS.gene30479:CDS |
| TTTAGGAGATTAGACAAAAG+GGG | 0.565002 | 6.4:+41221709 | MS.gene30479:CDS |
| GTTATGATTGGTGTAGTGGT+AGG | 0.565631 | 6.4:+41221838 | MS.gene30479:CDS |
| ACACCAATCATAACATGCCT+AGG | 0.568681 | 6.4:-41221829 | None:intergenic |
| GAAATTGAAGCTGATTACAT+TGG | 0.569179 | 6.4:+41225218 | MS.gene30479:CDS |
| GGTTGAGTAAGGAGAATGTG+TGG | 0.571308 | 6.4:+41222085 | MS.gene30479:CDS |
| CTGTGTTTGGTGAAGAAAGT+GGG | 0.573793 | 6.4:+41222136 | MS.gene30479:CDS |
| ACTGGCTCAAGCTCAGGTGA+TGG | 0.577941 | 6.4:+41225379 | MS.gene30479:CDS |
| TCTGTGTTTGGTGAAGAAAG+TGG | 0.579845 | 6.4:+41222135 | MS.gene30479:CDS |
| GAGTTTGAGAAGATGAAGGC+GGG | 0.581578 | 6.4:+41221973 | MS.gene30479:CDS |
| ATGCATTGACTGAAAATGAA+GGG | 0.590623 | 6.4:+41222172 | MS.gene30479:CDS |
| GCATGTTATGATTGGTGTAG+TGG | 0.600913 | 6.4:+41221834 | MS.gene30479:CDS |
| AGCAACTATTATTGGACATG+AGG | 0.602186 | 6.4:+41222428 | MS.gene30479:CDS |
| ATTATCGAAGCGTTGAAGAG+AGG | 0.605086 | 6.4:+41222063 | MS.gene30479:CDS |
| CGAGTTTGAGAAGATGAAGG+CGG | 0.609178 | 6.4:+41221972 | MS.gene30479:CDS |
| GAAGATGACAAAGAATATGT+GGG | 0.612484 | 6.4:+41222828 | MS.gene30479:CDS |
| GAATTGGCACCGGGAAGATG+AGG | 0.612493 | 6.4:+41222206 | MS.gene30479:CDS |
| AAAATGAAGGGAAAGTTGGA+GGG | 0.619844 | 6.4:+41222184 | MS.gene30479:CDS |
| TGATTAGGTTGGACATGCTG+TGG | 0.626030 | 6.4:+41222789 | MS.gene30479:intron |
| AACACGACTATCTTCCCACC+AGG | 0.637312 | 6.4:-41222366 | None:intergenic |
| CGCCGGCTACGATCCACGTG+TGG | 0.642188 | 6.4:+41225259 | MS.gene30479:CDS |
| ATATATAAGACTGTAAGAGA+AGG | 0.650562 | 6.4:+41225416 | MS.gene30479:CDS |
| AGAGATGGAGAAGAGTCTTG+GGG | 0.653875 | 6.4:+41221945 | MS.gene30479:CDS |
| TAGACTTTAGGTGCCACACG+TGG | 0.667217 | 6.4:-41225272 | None:intergenic |
| CACACGTGGATCGTAGCCGG+CGG | 0.706408 | 6.4:-41225258 | None:intergenic |
| GTTTGGTGAAGAAAGTGGGA+AGG | 0.710512 | 6.4:+41222140 | MS.gene30479:CDS |
| AAGACTGTAAGAGAAGGACA+TGG | 0.732952 | 6.4:+41225422 | MS.gene30479:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATTTATATTTATTA+TGG | + | chr6.4:41225148-41225167 | MS.gene30479:intron | 0.0% |
| !! | ATAAAAATTATAAGTGTTTA+TGG | - | chr6.4:41224250-41224269 | None:intergenic | 10.0% |
| !! | CTGAAAAATTATAAAAAATT+GGG | - | chr6.4:41225194-41225213 | None:intergenic | 10.0% |
| !!! | AAAATGTACAAATTTAAAAT+TGG | - | chr6.4:41224610-41224629 | None:intergenic | 10.0% |
| !!! | AATTTTGATTTATCATATAT+TGG | + | chr6.4:41224165-41224184 | MS.gene30479:intron | 10.0% |
| !! | AATAATAAGAATATTAGAGT+TGG | + | chr6.4:41221541-41221560 | MS.gene30479:CDS | 15.0% |
| !! | ATATTGAAAAGAAGATTAAA+CGG | - | chr6.4:41224740-41224759 | None:intergenic | 15.0% |
| !! | CCTGAAAAATTATAAAAAAT+TGG | - | chr6.4:41225195-41225214 | None:intergenic | 15.0% |
| !! | TTGAGATAAATAAGAATATT+GGG | + | chr6.4:41221635-41221654 | MS.gene30479:CDS | 15.0% |
| !! | TTTATTAAGCAATATGAAAT+TGG | + | chr6.4:41224033-41224052 | MS.gene30479:intron | 15.0% |
| !!! | ATTGGAAATTTTATTTTAGT+TGG | + | chr6.4:41224051-41224070 | MS.gene30479:intron | 15.0% |
| !!! | ATTTTAATTATACACAAATG+TGG | + | chr6.4:41225111-41225130 | MS.gene30479:intron | 15.0% |
| !!! | CCAATTTTTTATAATTTTTC+AGG | + | chr6.4:41225192-41225211 | MS.gene30479:intron | 15.0% |
| !!! | TTGAAGTTAATAAGAATTTT+AGG | + | chr6.4:41221734-41221753 | MS.gene30479:CDS | 15.0% |
| !!! | TTTGAGATAAATAAGAATAT+TGG | + | chr6.4:41221634-41221653 | MS.gene30479:CDS | 15.0% |
| !!! | TTTGATTTGTTTAACTTATT+AGG | + | chr6.4:41222457-41222476 | MS.gene30479:intron | 15.0% |
| !!! | TTTTTATAACTGTGTATTTT+GGG | + | chr6.4:41221869-41221888 | MS.gene30479:CDS | 15.0% |
| !!! | TTTTTTATAATTTTTCAGGA+TGG | + | chr6.4:41225196-41225215 | MS.gene30479:intron | 15.0% |
| !! | AAATTCCAATTCGTATTTAT+AGG | - | chr6.4:41224150-41224169 | None:intergenic | 20.0% |
| !! | CAAATAAAGAAAGAAAACAT+TGG | - | chr6.4:41223929-41223948 | None:intergenic | 20.0% |
| !! | CACGTTAAATATTAAGATAA+GGG | + | chr6.4:41223064-41223083 | MS.gene30479:intron | 20.0% |
| !! | CCAAATTAATTCATTTGTAT+AGG | + | chr6.4:41224512-41224531 | MS.gene30479:intron | 20.0% |
| !! | CCTATACAAATGAATTAATT+TGG | - | chr6.4:41224515-41224534 | None:intergenic | 20.0% |
| !! | GAATGAAATTAATGCAAATA+TGG | - | chr6.4:41224362-41224381 | None:intergenic | 20.0% |
| !! | TCAAATAAGTTAATCCAAAT+AGG | - | chr6.4:41222483-41222502 | None:intergenic | 20.0% |
| !! | TGAGATAAATAAGAATATTG+GGG | + | chr6.4:41221636-41221655 | MS.gene30479:CDS | 20.0% |
| !! | TGGTATTCTTGTATAAATTA+AGG | - | chr6.4:41224108-41224127 | None:intergenic | 20.0% |
| !! | TTAAGCTATTTATTCAAACA+AGG | + | chr6.4:41222705-41222724 | MS.gene30479:intron | 20.0% |
| !!! | GGACTTTTATTAATTTTTGT+TGG | - | chr6.4:41223487-41223506 | None:intergenic | 20.0% |
| !!! | GTTTTTATAACTGTGTATTT+TGG | + | chr6.4:41221868-41221887 | MS.gene30479:CDS | 20.0% |
| ! | AAGAGCAACAAAAATTCAAT+TGG | - | chr6.4:41222978-41222997 | None:intergenic | 25.0% |
| ! | AATTATAAGTGTTTATGGAG+AGG | - | chr6.4:41224245-41224264 | None:intergenic | 25.0% |
| ! | ACAAACCTATAAATACGAAT+TGG | + | chr6.4:41224142-41224161 | MS.gene30479:intron | 25.0% |
| ! | ATAAATAAGAATATTGGGGT+GGG | + | chr6.4:41221640-41221659 | MS.gene30479:CDS | 25.0% |
| ! | ATATATAAGACTGTAAGAGA+AGG | + | chr6.4:41225416-41225435 | MS.gene30479:CDS | 25.0% |
| ! | ATTATAAGTGTTTATGGAGA+GGG | - | chr6.4:41224244-41224263 | None:intergenic | 25.0% |
| ! | ATTGGTTATAAAGAGAGAAA+AGG | - | chr6.4:41222960-41222979 | None:intergenic | 25.0% |
| ! | CAAACCAAACAAAAACAAAA+TGG | - | chr6.4:41223725-41223744 | None:intergenic | 25.0% |
| ! | GAAAAATTATGTGTTTGAGT+TGG | - | chr6.4:41223275-41223294 | None:intergenic | 25.0% |
| ! | GAAACAATATATGATATGTC+TGG | + | chr6.4:41222551-41222570 | MS.gene30479:intron | 25.0% |
| ! | GACTCATTTCATTGATATAT+AGG | + | chr6.4:41223009-41223028 | MS.gene30479:intron | 25.0% |
| ! | GCACGTTAAATATTAAGATA+AGG | + | chr6.4:41223063-41223082 | MS.gene30479:intron | 25.0% |
| ! | TAACCGTTTCTTAAAATCAA+GGG | + | chr6.4:41223513-41223532 | MS.gene30479:intron | 25.0% |
| ! | TAAGGGAAAAACATGAAATT+AGG | + | chr6.4:41223081-41223100 | MS.gene30479:intron | 25.0% |
| ! | TGCAAATATGGATGTAATTT+CGG | - | chr6.4:41224350-41224369 | None:intergenic | 25.0% |
| ! | TTTAGTGTAATTACAAGTGT+CGG | + | chr6.4:41224892-41224911 | MS.gene30479:intron | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | - | chr6.4:41224861-41224880 | None:intergenic | 25.0% |
| !! | CATTTACATTTGTTTCTTGT+TGG | + | chr6.4:41224691-41224710 | MS.gene30479:intron | 25.0% |
| !! | TCTTTCTTTATTTGTTGCTA+TGG | + | chr6.4:41223935-41223954 | MS.gene30479:intron | 25.0% |
| !! | TTTAACTTATTAGGCCTATT+TGG | + | chr6.4:41222466-41222485 | MS.gene30479:intron | 25.0% |
| !! | TTTAAGAAACGGTTACATTT+TGG | - | chr6.4:41223508-41223527 | None:intergenic | 25.0% |
| !!! | ATTTTAGGAGATTAGACAAA+AGG | + | chr6.4:41221707-41221726 | MS.gene30479:CDS | 25.0% |
| !!! | CATTTTGTTTTTGTTTGGTT+TGG | + | chr6.4:41223723-41223742 | MS.gene30479:intron | 25.0% |
| !!! | GTTTGTCATGGTATTTTTTA+TGG | - | chr6.4:41224128-41224147 | None:intergenic | 25.0% |
| !!! | TTCTCCATTTTGTTTTTGTT+TGG | + | chr6.4:41223718-41223737 | MS.gene30479:intron | 25.0% |
| !!! | TTTTAGGAGATTAGACAAAA+GGG | + | chr6.4:41221708-41221727 | MS.gene30479:CDS | 25.0% |
| AACAGTGCAAATCATAAAAG+AGG | - | chr6.4:41223834-41223853 | None:intergenic | 30.0% | |
| AACCATAATGAGTCTGATTT+CGG | + | chr6.4:41224632-41224651 | MS.gene30479:intron | 30.0% | |
| AGAAGATGACAAAGAATATG+TGG | + | chr6.4:41222827-41222846 | MS.gene30479:CDS | 30.0% | |
| ATGAAGTTTAGCTGAATTAG+TGG | + | chr6.4:41223114-41223133 | MS.gene30479:intron | 30.0% | |
| ATTTGAATGTAGTATGAGCA+TGG | + | chr6.4:41223299-41223318 | MS.gene30479:intron | 30.0% | |
| CAACTGTTTGAGAGATATTA+CGG | + | chr6.4:41222529-41222548 | MS.gene30479:intron | 30.0% | |
| CTTAAGCGCTTATTTGATAA+AGG | + | chr6.4:41222662-41222681 | MS.gene30479:intron | 30.0% | |
| GAAATTGAAGCTGATTACAT+TGG | + | chr6.4:41225218-41225237 | MS.gene30479:CDS | 30.0% | |
| GAAGATGACAAAGAATATGT+GGG | + | chr6.4:41222828-41222847 | MS.gene30479:CDS | 30.0% | |
| GATAAATAAGAATATTGGGG+TGG | + | chr6.4:41221639-41221658 | MS.gene30479:CDS | 30.0% | |
| GTAAAGTAGTGCAACTTAAT+TGG | - | chr6.4:41224277-41224296 | None:intergenic | 30.0% | |
| GTAACCGTTTCTTAAAATCA+AGG | + | chr6.4:41223512-41223531 | MS.gene30479:intron | 30.0% | |
| TACACAAATGTGGTGAATTA+TGG | + | chr6.4:41225121-41225140 | MS.gene30479:intron | 30.0% | |
| TCGTATTTATAGGTTTGTCA+TGG | - | chr6.4:41224140-41224159 | None:intergenic | 30.0% | |
| TTTAGGAGATTAGACAAAAG+GGG | + | chr6.4:41221709-41221728 | MS.gene30479:CDS | 30.0% | |
| ! | AAAACATGGTTATGCCATTT+GGG | - | chr6.4:41224214-41224233 | None:intergenic | 30.0% |
| ! | AATAATTACCTTCTGGAGAA+AGG | - | chr6.4:41222934-41222953 | None:intergenic | 30.0% |
| ! | AATATTAGAGTTGGTTGTCA+AGG | + | chr6.4:41221550-41221569 | MS.gene30479:CDS | 30.0% |
| ! | ATAGGTAATGTTTGTTAGAC+AGG | + | chr6.4:41223027-41223046 | MS.gene30479:intron | 30.0% |
| ! | TTAAAATGCTGCACATTTTG+TGG | - | chr6.4:41221778-41221797 | None:intergenic | 30.0% |
| !! | AACTGTGTATTTTGGGAATA+TGG | + | chr6.4:41221876-41221895 | MS.gene30479:CDS | 30.0% |
| !! | AATGCATTGACTGAAAATGA+AGG | + | chr6.4:41222171-41222190 | MS.gene30479:CDS | 30.0% |
| !! | ATGCATTGACTGAAAATGAA+GGG | + | chr6.4:41222172-41222191 | MS.gene30479:CDS | 30.0% |
| !! | CAACCCTTGATTTTAAGAAA+CGG | - | chr6.4:41223519-41223538 | None:intergenic | 30.0% |
| !!! | GCTTCATTTTAACTTCTTTC+TGG | + | chr6.4:41224769-41224788 | MS.gene30479:intron | 30.0% |
| AAAATGAAGGGAAAGTTGGA+GGG | + | chr6.4:41222184-41222203 | MS.gene30479:CDS | 35.0% | |
| AAACGCAACAAGAAACATGA+AGG | - | chr6.4:41223555-41223574 | None:intergenic | 35.0% | |
| AAATGTGTTCGCTTCGTATA+AGG | - | chr6.4:41221910-41221929 | None:intergenic | 35.0% | |
| AAGAAAACGAGCAGAATTAC+TGG | + | chr6.4:41225361-41225380 | MS.gene30479:CDS | 35.0% | |
| AAGGAGGAATAATTACCTTC+TGG | - | chr6.4:41222941-41222960 | None:intergenic | 35.0% | |
| AATCCTAGGCATGTTATGAT+TGG | + | chr6.4:41221826-41221845 | MS.gene30479:CDS | 35.0% | |
| ACCTAAAGTCTACGAAAAGT+TGG | + | chr6.4:41225283-41225302 | MS.gene30479:CDS | 35.0% | |
| ACTGAAAATGAAGGGAAAGT+TGG | + | chr6.4:41222180-41222199 | MS.gene30479:CDS | 35.0% | |
| AGCAACTATTATTGGACATG+AGG | + | chr6.4:41222428-41222447 | MS.gene30479:CDS | 35.0% | |
| AGGAATAGAGCCAAATCATT+GGG | - | chr6.4:41223243-41223262 | None:intergenic | 35.0% | |
| ATCTAAAAGCTTAGAATCGC+CGG | - | chr6.4:41225318-41225337 | None:intergenic | 35.0% | |
| CAAGAAACATGAAGGATGTA+TGG | - | chr6.4:41223547-41223566 | None:intergenic | 35.0% | |
| CCTAAAGTCTACGAAAAGTT+GGG | + | chr6.4:41225284-41225303 | MS.gene30479:CDS | 35.0% | |
| CTTCAATTCCTAAGAGGTTA+GGG | + | chr6.4:41221602-41221621 | MS.gene30479:CDS | 35.0% | |
| GAAAACATGGTTATGCCATT+TGG | - | chr6.4:41224215-41224234 | None:intergenic | 35.0% | |
| GAAAAGTTGGGAAAAATCTC+CGG | + | chr6.4:41225296-41225315 | MS.gene30479:CDS | 35.0% | |
| GCAGAGATAGCAACTATTAT+TGG | + | chr6.4:41222420-41222439 | MS.gene30479:CDS | 35.0% | |
| GCTTCAGAAAATTCTGTGTT+TGG | + | chr6.4:41222123-41222142 | MS.gene30479:CDS | 35.0% | |
| GGTTATAAAGAGAGAAAAGG+AGG | - | chr6.4:41222957-41222976 | None:intergenic | 35.0% | |
| GTCAAGGTGGTAACTTTAAT+GGG | + | chr6.4:41221566-41221585 | MS.gene30479:CDS | 35.0% | |
| GTTCAGAAGAGTAGGAAAAA+AGG | + | chr6.4:41222246-41222265 | MS.gene30479:CDS | 35.0% | |
| TACTAGAGAATTCATGCATC+AGG | - | chr6.4:41224299-41224318 | None:intergenic | 35.0% | |
| TATGGATGTAATTTCGGAGT+AGG | - | chr6.4:41224344-41224363 | None:intergenic | 35.0% | |
| TCTTCAATTCCTAAGAGGTT+AGG | + | chr6.4:41221601-41221620 | MS.gene30479:CDS | 35.0% | |
| TGTCAAGGTGGTAACTTTAA+TGG | + | chr6.4:41221565-41221584 | MS.gene30479:CDS | 35.0% | |
| ! | AATTATTTTCTGCACAGACC+TGG | + | chr6.4:41223406-41223425 | MS.gene30479:intron | 35.0% |
| ! | AGAATTGGTTTCAGAATCCT+AGG | + | chr6.4:41221812-41221831 | MS.gene30479:CDS | 35.0% |
| ! | ATGAGGTTCTTGATGACAAA+TGG | + | chr6.4:41222223-41222242 | MS.gene30479:CDS | 35.0% |
| ! | ATTTGTTTCTTGTTGGACTG+TGG | + | chr6.4:41224698-41224717 | MS.gene30479:intron | 35.0% |
| ! | CGTTTTCTTCAATTCCTAAG+AGG | + | chr6.4:41221596-41221615 | MS.gene30479:CDS | 35.0% |
| ! | GAAGTATTCATTAGCCCAAA+TGG | + | chr6.4:41224197-41224216 | MS.gene30479:intron | 35.0% |
| ! | GGTTGGTTAGATAGTCAAAA+TGG | - | chr6.4:41225016-41225035 | None:intergenic | 35.0% |
| ! | TGAGGTTCTTGATGACAAAT+GGG | + | chr6.4:41222224-41222243 | MS.gene30479:CDS | 35.0% |
| !! | AAGCAAAAGGCATTAACCAT+AGG | - | chr6.4:41222345-41222364 | None:intergenic | 35.0% |
| !! | ATGTGTTTGAGTTGGTCTTA+AGG | - | chr6.4:41223267-41223286 | None:intergenic | 35.0% |
| !! | CCAAAGGTGTTAGCTTTAAT+GGG | + | chr6.4:41221665-41221684 | MS.gene30479:CDS | 35.0% |
| !! | CTATGTCATCGCTTTTGTTA+CGG | + | chr6.4:41222905-41222924 | MS.gene30479:CDS | 35.0% |
| !! | GACATAGTGTTGACAATATC+AGG | - | chr6.4:41222892-41222911 | None:intergenic | 35.0% |
| !! | GGATTCTGAAACCAATTCTT+TGG | - | chr6.4:41221811-41221830 | None:intergenic | 35.0% |
| !! | TCCAAAGGTGTTAGCTTTAA+TGG | + | chr6.4:41221664-41221683 | MS.gene30479:CDS | 35.0% |
| !!! | TAGCTTTAATGGGTTTTCGT+CGG | + | chr6.4:41221675-41221694 | MS.gene30479:CDS | 35.0% |
| AAAGAGATGGAGAAGAGTCT+TGG | + | chr6.4:41221943-41221962 | MS.gene30479:CDS | 40.0% | |
| AAAGTAGCCATGTCAGAACA+TGG | - | chr6.4:41225037-41225056 | None:intergenic | 40.0% | |
| AAGACTGTAAGAGAAGGACA+TGG | + | chr6.4:41225422-41225441 | MS.gene30479:CDS | 40.0% | |
| AAGAGATGGAGAAGAGTCTT+GGG | + | chr6.4:41221944-41221963 | MS.gene30479:CDS | 40.0% | |
| ACACCAATCATAACATGCCT+AGG | - | chr6.4:41221832-41221851 | None:intergenic | 40.0% | |
| AGACTCTTCTCCATCTCTTT+CGG | - | chr6.4:41221943-41221962 | None:intergenic | 40.0% | |
| AGCTGAATTAGTGGAACTAG+AGG | + | chr6.4:41223123-41223142 | MS.gene30479:intron | 40.0% | |
| AGTCATACCAAGTCCATACA+AGG | - | chr6.4:41223435-41223454 | None:intergenic | 40.0% | |
| AGTCTTAACACTTTGCTGCT+TGG | + | chr6.4:41222766-41222785 | MS.gene30479:intron | 40.0% | |
| ATAGAGCCAAATCATTGGGA+AGG | - | chr6.4:41223239-41223258 | None:intergenic | 40.0% | |
| ATCCTAACTCTCACACTTTC+AGG | - | chr6.4:41222030-41222049 | None:intergenic | 40.0% | |
| CAGGAATAGAGCCAAATCAT+TGG | - | chr6.4:41223244-41223263 | None:intergenic | 40.0% | |
| CCCATTAAAGCTAACACCTT+TGG | - | chr6.4:41221668-41221687 | None:intergenic | 40.0% | |
| CCTAAGAGGTTAGGGAAAAT+GGG | + | chr6.4:41221610-41221629 | MS.gene30479:CDS | 40.0% | |
| CTCCGAAATCAGACTCATTA+TGG | - | chr6.4:41224637-41224656 | None:intergenic | 40.0% | |
| GAAAATGAAGGGAAAGTTGG+AGG | + | chr6.4:41222183-41222202 | MS.gene30479:CDS | 40.0% | |
| GAAGAGTAGGAAAAAAGGTC+AGG | + | chr6.4:41222251-41222270 | MS.gene30479:CDS | 40.0% | |
| GAAGATTAAACGGAAACCCT+AGG | - | chr6.4:41224730-41224749 | None:intergenic | 40.0% | |
| GCATCAACATCTATGAAGCA+CGG | + | chr6.4:41224794-41224813 | MS.gene30479:intron | 40.0% | |
| GCATGTTATGATTGGTGTAG+TGG | + | chr6.4:41221834-41221853 | MS.gene30479:CDS | 40.0% | |
| GTTATGATTGGTGTAGTGGT+AGG | + | chr6.4:41221838-41221857 | MS.gene30479:CDS | 40.0% | |
| TAACCAACCATGTTCTGACA+TGG | + | chr6.4:41225027-41225046 | MS.gene30479:intron | 40.0% | |
| TAGAGCCAAATCATTGGGAA+GGG | - | chr6.4:41223238-41223257 | None:intergenic | 40.0% | |
| TATTTCGCTACTCATCCATC+TGG | + | chr6.4:41225338-41225357 | MS.gene30479:CDS | 40.0% | |
| TCCTAAGAGGTTAGGGAAAA+TGG | + | chr6.4:41221609-41221628 | MS.gene30479:CDS | 40.0% | |
| TCTCTGATTCTGTTCAGTGT+TGG | + | chr6.4:41223982-41224001 | MS.gene30479:intron | 40.0% | |
| TGATGTTGATCTACGAAGCA+CGG | - | chr6.4:41224981-41225000 | None:intergenic | 40.0% | |
| TGGGAAGATAGTCGTGTTTA+CGG | + | chr6.4:41222371-41222390 | MS.gene30479:CDS | 40.0% | |
| TGTCTGTTCAGTGTGTTTGT+TGG | + | chr6.4:41223900-41223919 | MS.gene30479:intron | 40.0% | |
| ! | ACAAATGGGTTCAGAAGAGT+AGG | + | chr6.4:41222238-41222257 | MS.gene30479:CDS | 40.0% |
| ! | ACTGAATTGGGAGATTTTGG+TGG | + | chr6.4:41222311-41222330 | MS.gene30479:CDS | 40.0% |
| ! | ATCCTGAAAGTGTGAGAGTT+AGG | + | chr6.4:41222025-41222044 | MS.gene30479:CDS | 40.0% |
| ! | ATTAGAGTTGGTTGTCAAGG+TGG | + | chr6.4:41221553-41221572 | MS.gene30479:CDS | 40.0% |
| ! | CATAGTCAGAGGTGTAAACT+CGG | - | chr6.4:41223358-41223377 | None:intergenic | 40.0% |
| ! | CCCAACTTTTCGTAGACTTT+AGG | - | chr6.4:41225287-41225306 | None:intergenic | 40.0% |
| ! | CTGTGTTTGGTGAAGAAAGT+GGG | + | chr6.4:41222136-41222155 | MS.gene30479:CDS | 40.0% |
| ! | GTTAATGCCTTTTGCTTACC+TGG | + | chr6.4:41222348-41222367 | MS.gene30479:CDS | 40.0% |
| ! | TCTGTGTTTGGTGAAGAAAG+TGG | + | chr6.4:41222135-41222154 | MS.gene30479:CDS | 40.0% |
| ! | TGCAGCATTTTAAGCCAAGA+GGG | + | chr6.4:41221785-41221804 | MS.gene30479:CDS | 40.0% |
| ! | TGCTCGAGTTATCTCGTTTT+GGG | - | chr6.4:41223385-41223404 | None:intergenic | 40.0% |
| ! | TGGACTGAATTGGGAGATTT+TGG | + | chr6.4:41222308-41222327 | MS.gene30479:CDS | 40.0% |
| ! | TTTTGCCCTTCCCAATGATT+TGG | + | chr6.4:41223230-41223249 | MS.gene30479:intron | 40.0% |
| !! | AAGATGAAGGCGGGTTTTAA+GGG | + | chr6.4:41221982-41222001 | MS.gene30479:CDS | 40.0% |
| !! | ATTATCGAAGCGTTGAAGAG+AGG | + | chr6.4:41222063-41222082 | MS.gene30479:CDS | 40.0% |
| !! | GATTTTGATGCCGAAAGAGA+TGG | + | chr6.4:41221930-41221949 | MS.gene30479:CDS | 40.0% |
| !! | GCATTTGGATGGACTGAATT+GGG | + | chr6.4:41222299-41222318 | MS.gene30479:CDS | 40.0% |
| !! | TTATCGAAGCGTTGAAGAGA+GGG | + | chr6.4:41222064-41222083 | MS.gene30479:CDS | 40.0% |
| !!! | CGTCGGTTTCGAAGAATTTT+AGG | + | chr6.4:41221692-41221711 | MS.gene30479:CDS | 40.0% |
| AACCAATTCTTTGGCCCTCT+TGG | - | chr6.4:41221802-41221821 | None:intergenic | 45.0% | |
| AAGGGAAAGTTGGAGGGAAT+TGG | + | chr6.4:41222190-41222209 | MS.gene30479:CDS | 45.0% | |
| ACACTTTCAGGATGCATTGC+AGG | - | chr6.4:41222018-41222037 | None:intergenic | 45.0% | |
| AGAGATGGAGAAGAGTCTTG+GGG | + | chr6.4:41221945-41221964 | MS.gene30479:CDS | 45.0% | |
| ATTGGTGTAGTGGTAGGTTC+TGG | + | chr6.4:41221844-41221863 | MS.gene30479:CDS | 45.0% | |
| CATCAAGAACCTCATCTTCC+CGG | - | chr6.4:41222218-41222237 | None:intergenic | 45.0% | |
| CCATCCAAATGCGACGTATA+AGG | - | chr6.4:41222291-41222310 | None:intergenic | 45.0% | |
| CCGAAGATGATACACAGCAA+CGG | - | chr6.4:41223628-41223647 | None:intergenic | 45.0% | |
| CCGTTGCTGTGTATCATCTT+CGG | + | chr6.4:41223625-41223644 | MS.gene30479:intron | 45.0% | |
| CCTTATACGTCGCATTTGGA+TGG | + | chr6.4:41222288-41222307 | MS.gene30479:CDS | 45.0% | |
| CGAGTTTGAGAAGATGAAGG+CGG | + | chr6.4:41221972-41221991 | MS.gene30479:CDS | 45.0% | |
| CTTCTATTAGTTGCATCCGC+CGG | + | chr6.4:41225242-41225261 | MS.gene30479:CDS | 45.0% | |
| GAGCGAGTTTGAGAAGATGA+AGG | + | chr6.4:41221969-41221988 | MS.gene30479:CDS | 45.0% | |
| GAGTTTGAGAAGATGAAGGC+GGG | + | chr6.4:41221973-41221992 | MS.gene30479:CDS | 45.0% | |
| GCAACCTTATACGTCGCATT+TGG | + | chr6.4:41222284-41222303 | MS.gene30479:CDS | 45.0% | |
| GCTACACGACTCAACGTATA+GGG | - | chr6.4:41223202-41223221 | None:intergenic | 45.0% | |
| GGGAAGATAGTCGTGTTTAC+GGG | + | chr6.4:41222372-41222391 | MS.gene30479:CDS | 45.0% | |
| GGTTGAGTAAGGAGAATGTG+TGG | + | chr6.4:41222085-41222104 | MS.gene30479:CDS | 45.0% | |
| GTTGAAGAGAGGGTTGAGTA+AGG | + | chr6.4:41222074-41222093 | MS.gene30479:CDS | 45.0% | |
| TAGCCATGTCAGAACATGGT+TGG | - | chr6.4:41225033-41225052 | None:intergenic | 45.0% | |
| TGCTACACGACTCAACGTAT+AGG | - | chr6.4:41223203-41223222 | None:intergenic | 45.0% | |
| ! | AATATTGGGGTGGGTTCCAA+AGG | + | chr6.4:41221649-41221668 | MS.gene30479:CDS | 45.0% |
| ! | AATGCCTTTTGCTTACCTGG+TGG | + | chr6.4:41222351-41222370 | MS.gene30479:CDS | 45.0% |
| ! | AGAGAAGGACATGGTGTTGA+AGG | + | chr6.4:41225431-41225450 | MS.gene30479:CDS | 45.0% |
| ! | ATGCCTTTTGCTTACCTGGT+GGG | + | chr6.4:41222352-41222371 | MS.gene30479:CDS | 45.0% |
| ! | CACTTTGCTGCTTGGTGATT+AGG | + | chr6.4:41222774-41222793 | MS.gene30479:intron | 45.0% |
| ! | CCCATTTTCCCTAACCTCTT+AGG | - | chr6.4:41221613-41221632 | None:intergenic | 45.0% |
| ! | CTGCTCGAGTTATCTCGTTT+TGG | - | chr6.4:41223386-41223405 | None:intergenic | 45.0% |
| ! | GTGCAGCATTTTAAGCCAAG+AGG | + | chr6.4:41221784-41221803 | MS.gene30479:CDS | 45.0% |
| ! | GTTTGGTGAAGAAAGTGGGA+AGG | + | chr6.4:41222140-41222159 | MS.gene30479:CDS | 45.0% |
| ! | TCTGCTCGTTTTCTTCCAGA+TGG | - | chr6.4:41225356-41225375 | None:intergenic | 45.0% |
| ! | TTGCTGCTTGGTGATTAGGT+TGG | + | chr6.4:41222778-41222797 | MS.gene30479:intron | 45.0% |
| ! | TTTTCTTGCGTTTGCGTGTC+AGG | + | chr6.4:41223693-41223712 | MS.gene30479:intron | 45.0% |
| !! | AGAATTACTGGCTCAAGCTC+AGG | + | chr6.4:41225373-41225392 | MS.gene30479:CDS | 45.0% |
| !! | CGCATTTGGATGGACTGAAT+TGG | + | chr6.4:41222298-41222317 | MS.gene30479:CDS | 45.0% |
| !! | GAAGATGAAGGCGGGTTTTA+AGG | + | chr6.4:41221981-41222000 | MS.gene30479:CDS | 45.0% |
| !! | GAGAGGGCATTACGAAAACA+TGG | - | chr6.4:41224228-41224247 | None:intergenic | 45.0% |
| !! | GTTTGAGTTGGTCTTAAGGC+AGG | - | chr6.4:41223263-41223282 | None:intergenic | 45.0% |
| !! | TCGAGTTATCTCGTTTTGGG+AGG | - | chr6.4:41223382-41223401 | None:intergenic | 45.0% |
| !! | TGATTAGGTTGGACATGCTG+TGG | + | chr6.4:41222789-41222808 | MS.gene30479:intron | 45.0% |
| !! | TGGACTGTGGATTAGTCCTA+GGG | + | chr6.4:41224711-41224730 | MS.gene30479:intron | 45.0% |
| !! | TTGGACTGTGGATTAGTCCT+AGG | + | chr6.4:41224710-41224729 | MS.gene30479:intron | 45.0% |
| !! | TTTGGTGGTGAAGGATCCTA+TGG | + | chr6.4:41222326-41222345 | MS.gene30479:CDS | 45.0% |
| !! | TTTTGGGAGGTCATAGTCAG+AGG | - | chr6.4:41223369-41223388 | None:intergenic | 45.0% |
| !!! | AGATGAAGGCGGGTTTTAAG+GGG | + | chr6.4:41221983-41222002 | MS.gene30479:CDS | 45.0% |
| !!! | TTGGGAGATTTTGGTGGTGA+AGG | + | chr6.4:41222317-41222336 | MS.gene30479:CDS | 45.0% |
| AACACGACTATCTTCCCACC+AGG | - | chr6.4:41222369-41222388 | None:intergenic | 50.0% | |
| AAGTTGGAGGGAATTGGCAC+CGG | + | chr6.4:41222196-41222215 | MS.gene30479:CDS | 50.0% | |
| AATGCAACACTCAGCATGCG+AGG | - | chr6.4:41223659-41223678 | None:intergenic | 50.0% | |
| ACAGACCTGGATGCCTTGTA+TGG | + | chr6.4:41223419-41223438 | MS.gene30479:intron | 50.0% | |
| ACGGATACAGACACAGACAC+CGG | + | chr6.4:41224813-41224832 | MS.gene30479:intron | 50.0% | |
| AGCCAAGAGGGCCAAAGAAT+TGG | + | chr6.4:41221797-41221816 | MS.gene30479:CDS | 50.0% | |
| AGGAAAAAAGGTCAGGAGCG+AGG | + | chr6.4:41222258-41222277 | MS.gene30479:CDS | 50.0% | |
| CATCTTCTCAGCACTGTGTC+TGG | - | chr6.4:41222815-41222834 | None:intergenic | 50.0% | |
| CTGGATGCCTTGTATGGACT+TGG | + | chr6.4:41223425-41223444 | MS.gene30479:intron | 50.0% | |
| CTTCCCACCAGGTAAGCAAA+AGG | - | chr6.4:41222358-41222377 | None:intergenic | 50.0% | |
| TACGGCTACCTTTCTCCAGA+AGG | + | chr6.4:41222923-41222942 | MS.gene30479:CDS | 50.0% | |
| ! | CAAGTCCATACAAGGCATCC+AGG | - | chr6.4:41223427-41223446 | None:intergenic | 50.0% |
| ! | TAGACTTTAGGTGCCACACG+TGG | - | chr6.4:41225275-41225294 | None:intergenic | 50.0% |
| !! | GTCAATGTCCGTGTCGTTTC+CGG | - | chr6.4:41224835-41224854 | None:intergenic | 50.0% |
| !! | TACAAGTGTCGGTGTCGTGT+CGG | + | chr6.4:41224903-41224922 | MS.gene30479:intron | 50.0% |
| ACAGCAACGGCATTGCACAC+AGG | - | chr6.4:41223615-41223634 | None:intergenic | 55.0% | |
| AGTTGGAGGGAATTGGCACC+GGG | + | chr6.4:41222197-41222216 | MS.gene30479:CDS | 55.0% | |
| CAACACTCAGCATGCGAGGA+AGG | - | chr6.4:41223655-41223674 | None:intergenic | 55.0% | |
| CACAGACACCGGAAACGACA+CGG | + | chr6.4:41224824-41224843 | MS.gene30479:intron | 55.0% | |
| GATTAGACGTGTCCCGGTGT+CGG | - | chr6.4:41224948-41224967 | None:intergenic | 55.0% | |
| TACGAAGCACGGACACTCCT+CGG | - | chr6.4:41224970-41224989 | None:intergenic | 55.0% | |
| ! | ACTGGCTCAAGCTCAGGTGA+TGG | + | chr6.4:41225379-41225398 | MS.gene30479:CDS | 55.0% |
| ! | GAATTGGCACCGGGAAGATG+AGG | + | chr6.4:41222206-41222225 | MS.gene30479:CDS | 55.0% |
| ! | TCCTCGGATTAGACGTGTCC+CGG | - | chr6.4:41224954-41224973 | None:intergenic | 55.0% |
| ACACGACACGTGTCCGACAC+CGG | + | chr6.4:41224932-41224951 | MS.gene30479:intron | 60.0% | |
| ACCGGGACACGTCTAATCCG+AGG | + | chr6.4:41224950-41224969 | MS.gene30479:intron | 60.0% | |
| TGCCACACGTGGATCGTAGC+CGG | - | chr6.4:41225264-41225283 | None:intergenic | 60.0% | |
| !! | TGTCGGTGTCGTGTCGGTGT+CGG | + | chr6.4:41224909-41224928 | MS.gene30479:intron | 60.0% |
| CACACGTGGATCGTAGCCGG+CGG | - | chr6.4:41225261-41225280 | None:intergenic | 65.0% | |
| CACGACACGTGTCCGACACC+GGG | + | chr6.4:41224933-41224952 | MS.gene30479:intron | 65.0% | |
| ! | CGCCGGCTACGATCCACGTG+TGG | + | chr6.4:41225259-41225278 | MS.gene30479:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 41221529 | 41225463 | 41221529 | ID=MS.gene30479 |
| chr6.4 | mRNA | 41221529 | 41225463 | 41221529 | ID=MS.gene30479.t1;Parent=MS.gene30479 |
| chr6.4 | exon | 41221529 | 41222449 | 41221529 | ID=MS.gene30479.t1.exon1;Parent=MS.gene30479.t1 |
| chr6.4 | CDS | 41221529 | 41222449 | 41221529 | ID=cds.MS.gene30479.t1;Parent=MS.gene30479.t1 |
| chr6.4 | exon | 41222796 | 41222944 | 41222796 | ID=MS.gene30479.t1.exon2;Parent=MS.gene30479.t1 |
| chr6.4 | CDS | 41222796 | 41222944 | 41222796 | ID=cds.MS.gene30479.t1;Parent=MS.gene30479.t1 |
| chr6.4 | exon | 41225214 | 41225463 | 41225214 | ID=MS.gene30479.t1.exon3;Parent=MS.gene30479.t1 |
| chr6.4 | CDS | 41225214 | 41225463 | 41225214 | ID=cds.MS.gene30479.t1;Parent=MS.gene30479.t1 |
| Gene Sequence |
| Protein sequence |
