Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31028.t1 | XP_003602502.1 | 97 | 233 | 6 | 1 | 1 | 232 | 12 | 244 | 7.70E-117 | 429.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31028.t1 | Q9SVB7 | 78.8 | 113 | 19 | 1 | 125 | 232 | 192 | 304 | 4.2e-47 | 189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31028.t1 | G7JAC1 | 97.0 | 233 | 6 | 1 | 1 | 232 | 12 | 244 | 5.5e-117 | 429.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene31028 | 0.824401 | 8.23E-54 | -1.69E-46 |
| MS.gene049350 | MS.gene31028 | 0.90433 | 1.37E-79 | -1.69E-46 |
| MS.gene049368 | MS.gene31028 | 0.803066 | 4.16E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene31028 | 0.813383 | 2.63E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene31028 | 0.809613 | 1.74E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene31028 | 0.809669 | 1.69E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene31028 | 0.801912 | 7.20E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene31028 | 0.812804 | 3.53E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene31028 | 0.822085 | 2.86E-53 | -1.69E-46 |
| MS.gene054142 | MS.gene31028 | 0.804062 | 2.59E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene31028 | 0.80987 | 1.53E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene31028 | 0.810487 | 1.12E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene31028 | 0.813013 | 3.17E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene31028 | 0.805662 | 1.20E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene31028 | 0.800896 | 1.16E-48 | -1.69E-46 |
| MS.gene056005 | MS.gene31028 | 0.818076 | 2.37E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene31028 | 0.811735 | 6.03E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene31028 | 0.808992 | 2.36E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene31028 | 0.801198 | 1.01E-48 | -1.69E-46 |
| MS.gene057132 | MS.gene31028 | 0.801185 | 1.01E-48 | -1.69E-46 |
| MS.gene058852 | MS.gene31028 | 0.813087 | 3.06E-51 | -1.69E-46 |
| MS.gene061188 | MS.gene31028 | 0.808514 | 2.98E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATCTTACTTCTAGTTT+TGG | 0.279525 | 3.3:+78894689 | MS.gene31028:CDS |
| TCAGCAAAATTTGCAGCTTC+AGG | 0.298513 | 3.3:-78894623 | None:intergenic |
| TATGTGGTTATCACCATTCT+TGG | 0.301275 | 3.3:-78896567 | None:intergenic |
| GATTCTTCAAGTTCATTTGA+TGG | 0.326616 | 3.3:-78896612 | None:intergenic |
| AAACATGACCTTACCTCCTT+TGG | 0.332541 | 3.3:+78894541 | MS.gene31028:CDS |
| CTGAACTTACTAATTTCTTC+TGG | 0.337305 | 3.3:+78896646 | MS.gene31028:CDS |
| ACAGATCCAAAGTGAATTCA+TGG | 0.376673 | 3.3:+78894738 | MS.gene31028:CDS |
| CTTTGGATCTGTTCAAAGAA+AGG | 0.382028 | 3.3:-78894727 | None:intergenic |
| AAAGGAGGTAAGGTCATGTT+TGG | 0.420084 | 3.3:-78894539 | None:intergenic |
| TCATGAGATCCCTATGCAAA+TGG | 0.425861 | 3.3:+78894496 | MS.gene31028:CDS |
| CCATAGCTTGTTTGATCAAG+AGG | 0.452922 | 3.3:+78894469 | None:intergenic |
| TATGATTGAATTTAGGGCAT+GGG | 0.455045 | 3.3:+78895174 | MS.gene31028:intron |
| TACCTTTCAAAGATTGATGA+TGG | 0.466958 | 3.3:-78894571 | None:intergenic |
| TGAAGAAAATGAAGGGAAGA+AGG | 0.467112 | 3.3:+78895293 | MS.gene31028:CDS |
| CATCATCAAAATCAACAACT+AGG | 0.470537 | 3.3:+78895253 | MS.gene31028:CDS |
| CATGAGATCCCTATGCAAAT+GGG | 0.477999 | 3.3:+78894497 | MS.gene31028:CDS |
| ATCTCACCATGAATTCACTT+TGG | 0.483028 | 3.3:-78894744 | None:intergenic |
| ATCATCAAAATCAACAACTA+GGG | 0.483451 | 3.3:+78895254 | MS.gene31028:CDS |
| GAAGGAAGGTGAGGGAGCCT+AGG | 0.492345 | 3.3:+78895311 | MS.gene31028:CDS |
| AGAAGTAACTGATAGCTTGA+TGG | 0.501267 | 3.3:+78895198 | MS.gene31028:CDS |
| AAGGTCATGTTTGGAGGGAA+AGG | 0.503288 | 3.3:-78894530 | None:intergenic |
| ACGTGTGGAGCGGTTGGCTG+AGG | 0.504103 | 3.3:+78896542 | MS.gene31028:CDS |
| TTGAACAGCTGTTGCAAGGA+GGG | 0.504686 | 3.3:-78894648 | None:intergenic |
| TGAAGGGAAGAAGGAAGGTG+AGG | 0.508932 | 3.3:+78895302 | MS.gene31028:CDS |
| ATCTGTTCAAAGAAAGGAGT+TGG | 0.513213 | 3.3:-78894721 | None:intergenic |
| AATAAAGATGAAGAAAATGA+AGG | 0.519125 | 3.3:+78895285 | MS.gene31028:CDS |
| GAAGTAACTGATAGCTTGAT+GGG | 0.521967 | 3.3:+78895199 | MS.gene31028:CDS |
| AGCATGTCTTCCTTCATATG+TGG | 0.525478 | 3.3:-78896583 | None:intergenic |
| GCAATTATCCAAAGGAGGTA+AGG | 0.525699 | 3.3:-78894549 | None:intergenic |
| GAAAATGAAGGGAAGAAGGA+AGG | 0.526149 | 3.3:+78895297 | MS.gene31028:CDS |
| ATGATTGAATTTAGGGCATG+GGG | 0.530214 | 3.3:+78895175 | MS.gene31028:intron |
| GAAGGGAAGAAGGAAGGTGA+GGG | 0.532669 | 3.3:+78895303 | MS.gene31028:CDS |
| GGAGGTAAGGTCATGTTTGG+AGG | 0.539020 | 3.3:-78894536 | None:intergenic |
| GGTTACAAGTGGAGGAAGTA+CGG | 0.540793 | 3.3:+78895376 | MS.gene31028:CDS |
| TGCCATCATCAATCTTTGAA+AGG | 0.544773 | 3.3:+78894569 | MS.gene31028:CDS |
| TATTGAACCCCATTTGCATA+GGG | 0.544992 | 3.3:-78894505 | None:intergenic |
| ATATTGAACCCCATTTGCAT+AGG | 0.547777 | 3.3:-78894506 | None:intergenic |
| ATAAAGATGAAGAAAATGAA+GGG | 0.547814 | 3.3:+78895286 | MS.gene31028:CDS |
| ATGGTGATAACCACATATGA+AGG | 0.551016 | 3.3:+78896573 | MS.gene31028:CDS |
| AAAGAAACGTGTGGAGCGGT+TGG | 0.558270 | 3.3:+78896536 | MS.gene31028:CDS |
| GCTTCAGGAGAAAGTGATGA+AGG | 0.566189 | 3.3:-78894608 | None:intergenic |
| GACGTGGATGTGTTGGATGA+TGG | 0.572793 | 3.3:+78895355 | MS.gene31028:CDS |
| GAGGTAAGGTCATGTTTGGA+GGG | 0.578786 | 3.3:-78894535 | None:intergenic |
| GAGGAAGTACGGACAGAAAG+TGG | 0.580020 | 3.3:+78895387 | MS.gene31028:CDS |
| TATGAGCGACGTGGATGTGT+TGG | 0.583583 | 3.3:+78895348 | MS.gene31028:CDS |
| GTTGGCTGAGGATCCAAGAA+TGG | 0.588263 | 3.3:+78896554 | MS.gene31028:CDS |
| TAAAGAACACACAGCATCCA+AGG | 0.591239 | 3.3:+78895410 | MS.gene31028:CDS |
| AGATGATCTTCAAATTCTCG+TGG | 0.612771 | 3.3:-78894674 | None:intergenic |
| GACAATTATCTTGTGTGCAA+CGG | 0.619219 | 3.3:-78896509 | None:intergenic |
| TGGATGATGGTTACAAGTGG+AGG | 0.635586 | 3.3:+78895368 | MS.gene31028:CDS |
| ATGAGATCCCTATGCAAATG+GGG | 0.638441 | 3.3:+78894498 | MS.gene31028:CDS |
| TGATGATGGCAATTATCCAA+AGG | 0.643521 | 3.3:-78894557 | None:intergenic |
| TCATCAAAATCAACAACTAG+GGG | 0.646236 | 3.3:+78895255 | MS.gene31028:CDS |
| ATAGTCTTGAAGCAAAACCT+AGG | 0.654328 | 3.3:-78895328 | None:intergenic |
| TTGTCGAGTAAAGAAACGTG+TGG | 0.654452 | 3.3:+78896527 | MS.gene31028:CDS |
| CTTCAAGACTATGAGCGACG+TGG | 0.655053 | 3.3:+78895339 | MS.gene31028:CDS |
| TGTTGGATGATGGTTACAAG+TGG | 0.666245 | 3.3:+78895365 | MS.gene31028:CDS |
| TTTGAACAGCTGTTGCAAGG+AGG | 0.670990 | 3.3:-78894649 | None:intergenic |
| TGATGGCAATTATCCAAAGG+AGG | 0.672690 | 3.3:-78894554 | None:intergenic |
| GAGTAAAGAAACGTGTGGAG+CGG | 0.683085 | 3.3:+78896532 | MS.gene31028:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAATCTTAACATTTT+GGG | - | chr3.3:78895889-78895908 | None:intergenic | 10.0% |
| !!! | ATTTGCTTATATTTTTTTAA+GGG | + | chr3.3:78895084-78895103 | MS.gene31028:intron | 10.0% |
| !!! | TAAAATAAATCTTAACATTT+TGG | - | chr3.3:78895890-78895909 | None:intergenic | 10.0% |
| !!! | TATTTGCTTATATTTTTTTA+AGG | + | chr3.3:78895083-78895102 | MS.gene31028:intron | 10.0% |
| !! | ATTTACCTATCAAAAAATAT+AGG | + | chr3.3:78895046-78895065 | MS.gene31028:intron | 15.0% |
| !! | AATAAAGATGAAGAAAATGA+AGG | + | chr3.3:78895285-78895304 | MS.gene31028:CDS | 20.0% |
| !! | ATAAAGATGAAGAAAATGAA+GGG | + | chr3.3:78895286-78895305 | MS.gene31028:CDS | 20.0% |
| !! | ATTAAATATAGATACTAGTC+TGG | + | chr3.3:78894828-78894847 | MS.gene31028:intron | 20.0% |
| !! | CAAGCAAAATTGTATATAAA+AGG | - | chr3.3:78895832-78895851 | None:intergenic | 20.0% |
| !! | GGTTATACTATAACATATAT+AGG | - | chr3.3:78895746-78895765 | None:intergenic | 20.0% |
| !! | GTGGAATATTTGAAAATTTA+AGG | - | chr3.3:78894777-78894796 | None:intergenic | 20.0% |
| !! | TTCTAATAAACAATAATGAG+AGG | - | chr3.3:78895511-78895530 | None:intergenic | 20.0% |
| !!! | ATTTGCCTATATTTTTTGAT+AGG | - | chr3.3:78895054-78895073 | None:intergenic | 20.0% |
| !!! | TATAGTACTATTTTCCTTTT+TGG | - | chr3.3:78896436-78896455 | None:intergenic | 20.0% |
| !!! | TATTTGCCTTATGATTATTT+TGG | + | chr3.3:78895536-78895555 | MS.gene31028:intron | 20.0% |
| ! | AAAAGAGAGAAAATTTGAAG+TGG | - | chr3.3:78895451-78895470 | None:intergenic | 25.0% |
| ! | AAACTTAACTCTCTTTACAA+AGG | - | chr3.3:78895144-78895163 | None:intergenic | 25.0% |
| ! | AAGTAAAAACCATCATTACT+AGG | - | chr3.3:78896310-78896329 | None:intergenic | 25.0% |
| ! | ATACTATAACATATATAGGC+TGG | - | chr3.3:78895742-78895761 | None:intergenic | 25.0% |
| ! | ATCATCAAAATCAACAACTA+GGG | + | chr3.3:78895254-78895273 | MS.gene31028:CDS | 25.0% |
| ! | GTACAGCATAAATAAAAAAC+AGG | - | chr3.3:78896335-78896354 | None:intergenic | 25.0% |
| ! | GTATTAAGGACAAAGAAAAT+GGG | - | chr3.3:78896370-78896389 | None:intergenic | 25.0% |
| ! | GTTGGATATGATTGAATTTA+GGG | + | chr3.3:78895168-78895187 | MS.gene31028:intron | 25.0% |
| ! | TAAGCACCAAAATAATCATA+AGG | - | chr3.3:78895545-78895564 | None:intergenic | 25.0% |
| ! | TAATAAACAATAATGAGAGG+AGG | - | chr3.3:78895508-78895527 | None:intergenic | 25.0% |
| ! | TATATATTGAATGAGTGCAA+AGG | - | chr3.3:78895787-78895806 | None:intergenic | 25.0% |
| ! | TGTAATCCAAGTTACTATAT+AGG | - | chr3.3:78896396-78896415 | None:intergenic | 25.0% |
| !! | TGATAAGTTTTCATTTGAGT+GGG | - | chr3.3:78896032-78896051 | None:intergenic | 25.0% |
| !! | TTGATAAGTTTTCATTTGAG+TGG | - | chr3.3:78896033-78896052 | None:intergenic | 25.0% |
| !!! | TACTATATAGGAAGGTATTA+AGG | - | chr3.3:78896384-78896403 | None:intergenic | 25.0% |
| AACATTTGCTTGAATTTGTG+TGG | + | chr3.3:78896167-78896186 | MS.gene31028:intron | 30.0% | |
| ACATTTGCTTGAATTTGTGT+GGG | + | chr3.3:78896168-78896187 | MS.gene31028:intron | 30.0% | |
| AGATTTCACTTTATGTCTTC+TGG | + | chr3.3:78895604-78895623 | MS.gene31028:intron | 30.0% | |
| ATCCAAGTTACTATATAGGA+AGG | - | chr3.3:78896392-78896411 | None:intergenic | 30.0% | |
| CATCATCAAAATCAACAACT+AGG | + | chr3.3:78895253-78895272 | MS.gene31028:CDS | 30.0% | |
| CTGAACTTACTAATTTCTTC+TGG | + | chr3.3:78896646-78896665 | MS.gene31028:CDS | 30.0% | |
| GATTTCACTTTATGTCTTCT+GGG | + | chr3.3:78895605-78895624 | MS.gene31028:intron | 30.0% | |
| GGTATTAAGGACAAAGAAAA+TGG | - | chr3.3:78896371-78896390 | None:intergenic | 30.0% | |
| GGTTGGATATGATTGAATTT+AGG | + | chr3.3:78895167-78895186 | MS.gene31028:intron | 30.0% | |
| GTTTGTGATTAATATGCAAG+TGG | - | chr3.3:78895025-78895044 | None:intergenic | 30.0% | |
| TACCTTCCTATATAGTAACT+TGG | + | chr3.3:78896387-78896406 | MS.gene31028:intron | 30.0% | |
| TACCTTTCAAAGATTGATGA+TGG | - | chr3.3:78894574-78894593 | None:intergenic | 30.0% | |
| TATGCGTAATGTTGAAAGTT+AGG | + | chr3.3:78895678-78895697 | MS.gene31028:intron | 30.0% | |
| TATGTACTTTAGCACCAAAA+AGG | + | chr3.3:78896419-78896438 | MS.gene31028:intron | 30.0% | |
| TCATCAAAATCAACAACTAG+GGG | + | chr3.3:78895255-78895274 | MS.gene31028:CDS | 30.0% | |
| ! | AGAGTCCTAATTTTCAACAT+CGG | - | chr3.3:78895647-78895666 | None:intergenic | 30.0% |
| ! | ATATGATTGAATTTAGGGCA+TGG | + | chr3.3:78895173-78895192 | MS.gene31028:intron | 30.0% |
| ! | GATTCTTCAAGTTCATTTGA+TGG | - | chr3.3:78896615-78896634 | None:intergenic | 30.0% |
| ! | GTAAAGAGAGTTAAGTTTTG+TGG | + | chr3.3:78895146-78895165 | MS.gene31028:intron | 30.0% |
| ! | TATGATTGAATTTAGGGCAT+GGG | + | chr3.3:78895174-78895193 | MS.gene31028:intron | 30.0% |
| !! | AGTAAGAAGTGTCATATTGT+TGG | - | chr3.3:78896128-78896147 | None:intergenic | 30.0% |
| !!! | GATCATCTTACTTCTAGTTT+TGG | + | chr3.3:78894689-78894708 | MS.gene31028:CDS | 30.0% |
| !!! | GATTATTTTGGTGCTTAAGA+GGG | + | chr3.3:78895548-78895567 | MS.gene31028:intron | 30.0% |
| !!! | TGATTATTTTGGTGCTTAAG+AGG | + | chr3.3:78895547-78895566 | MS.gene31028:intron | 30.0% |
| AACCATCATTACTAGGAGAA+AGG | - | chr3.3:78896303-78896322 | None:intergenic | 35.0% | |
| ACAGATCCAAAGTGAATTCA+TGG | + | chr3.3:78894738-78894757 | MS.gene31028:CDS | 35.0% | |
| ACCATCATTACTAGGAGAAA+GGG | - | chr3.3:78896302-78896321 | None:intergenic | 35.0% | |
| AGAAGTAACTGATAGCTTGA+TGG | + | chr3.3:78895198-78895217 | MS.gene31028:CDS | 35.0% | |
| AGATGATCTTCAAATTCTCG+TGG | - | chr3.3:78894677-78894696 | None:intergenic | 35.0% | |
| ATATTGAACCCCATTTGCAT+AGG | - | chr3.3:78894509-78894528 | None:intergenic | 35.0% | |
| ATCTCACCATGAATTCACTT+TGG | - | chr3.3:78894747-78894766 | None:intergenic | 35.0% | |
| ATCTGTTCAAAGAAAGGAGT+TGG | - | chr3.3:78894724-78894743 | None:intergenic | 35.0% | |
| ATGGTGATAACCACATATGA+AGG | + | chr3.3:78896573-78896592 | MS.gene31028:CDS | 35.0% | |
| CTTTGGATCTGTTCAAAGAA+AGG | - | chr3.3:78894730-78894749 | None:intergenic | 35.0% | |
| GAAGTAACTGATAGCTTGAT+GGG | + | chr3.3:78895199-78895218 | MS.gene31028:CDS | 35.0% | |
| GACAACACTGATAATCATTG+AGG | + | chr3.3:78895570-78895589 | MS.gene31028:intron | 35.0% | |
| GACAATTATCTTGTGTGCAA+CGG | - | chr3.3:78896512-78896531 | None:intergenic | 35.0% | |
| GGAGATAATGAATACTACCT+TGG | - | chr3.3:78895430-78895449 | None:intergenic | 35.0% | |
| GTTTGCCGATGTTGAAAATT+AGG | + | chr3.3:78895639-78895658 | MS.gene31028:intron | 35.0% | |
| TATGTGGTTATCACCATTCT+TGG | - | chr3.3:78896570-78896589 | None:intergenic | 35.0% | |
| TATTGAACCCCATTTGCATA+GGG | - | chr3.3:78894508-78894527 | None:intergenic | 35.0% | |
| TGAAGAAAATGAAGGGAAGA+AGG | + | chr3.3:78895293-78895312 | MS.gene31028:CDS | 35.0% | |
| TGCCATCATCAATCTTTGAA+AGG | + | chr3.3:78894569-78894588 | MS.gene31028:CDS | 35.0% | |
| TTGATGGGAAAAAGAAGTAG+TGG | + | chr3.3:78895214-78895233 | MS.gene31028:CDS | 35.0% | |
| ! | ATAGTCTTGAAGCAAAACCT+AGG | - | chr3.3:78895331-78895350 | None:intergenic | 35.0% |
| ! | ATGATTGAATTTAGGGCATG+GGG | + | chr3.3:78895175-78895194 | MS.gene31028:intron | 35.0% |
| ! | ATGTATTTTGTGGGTCATGA+GGG | + | chr3.3:78895954-78895973 | MS.gene31028:intron | 35.0% |
| ! | TTGCACGACATGTATTTTGT+GGG | + | chr3.3:78895945-78895964 | MS.gene31028:intron | 35.0% |
| ! | TTTGCACGACATGTATTTTG+TGG | + | chr3.3:78895944-78895963 | MS.gene31028:intron | 35.0% |
| !! | AGAGAGTTAAGTTTTGTGGT+TGG | + | chr3.3:78895150-78895169 | MS.gene31028:intron | 35.0% |
| !! | TGATGATGGCAATTATCCAA+AGG | - | chr3.3:78894560-78894579 | None:intergenic | 35.0% |
| !!! | CATCTTACTTCTAGTTTTGG+AGG | + | chr3.3:78894692-78894711 | MS.gene31028:CDS | 35.0% |
| AAACATGACCTTACCTCCTT+TGG | + | chr3.3:78894541-78894560 | MS.gene31028:CDS | 40.0% | |
| AAAGGAGGTAAGGTCATGTT+TGG | - | chr3.3:78894542-78894561 | None:intergenic | 40.0% | |
| AACGGTAGTAGCTTCTACAA+AGG | - | chr3.3:78896494-78896513 | None:intergenic | 40.0% | |
| ACCCTTTCTCCTAGTAATGA+TGG | + | chr3.3:78896298-78896317 | MS.gene31028:intron | 40.0% | |
| AGCATGTCTTCCTTCATATG+TGG | - | chr3.3:78896586-78896605 | None:intergenic | 40.0% | |
| AGGAGAAACTTCTTGGTACT+TGG | - | chr3.3:78895767-78895786 | None:intergenic | 40.0% | |
| AGTGCAAAGGAGAAACTTCT+TGG | - | chr3.3:78895774-78895793 | None:intergenic | 40.0% | |
| ATGAGATCCCTATGCAAATG+GGG | + | chr3.3:78894498-78894517 | MS.gene31028:CDS | 40.0% | |
| ATGGGAAAAAGAAGTAGTGG+AGG | + | chr3.3:78895217-78895236 | MS.gene31028:CDS | 40.0% | |
| CATGAGATCCCTATGCAAAT+GGG | + | chr3.3:78894497-78894516 | MS.gene31028:CDS | 40.0% | |
| GAAAATGAAGGGAAGAAGGA+AGG | + | chr3.3:78895297-78895316 | MS.gene31028:CDS | 40.0% | |
| GCAATTATCCAAAGGAGGTA+AGG | - | chr3.3:78894552-78894571 | None:intergenic | 40.0% | |
| TAAAGAACACACAGCATCCA+AGG | + | chr3.3:78895410-78895429 | MS.gene31028:CDS | 40.0% | |
| TCAGCAAAATTTGCAGCTTC+AGG | - | chr3.3:78894626-78894645 | None:intergenic | 40.0% | |
| TCATGAGATCCCTATGCAAA+TGG | + | chr3.3:78894496-78894515 | MS.gene31028:CDS | 40.0% | |
| TGATGGCAATTATCCAAAGG+AGG | - | chr3.3:78894557-78894576 | None:intergenic | 40.0% | |
| TGTGGGAGCTAATAAAAGTG+TGG | + | chr3.3:78896185-78896204 | MS.gene31028:intron | 40.0% | |
| TTGTCGAGTAAAGAAACGTG+TGG | + | chr3.3:78896527-78896546 | MS.gene31028:CDS | 40.0% | |
| TTTGCTTGACGACATATGTG+TGG | + | chr3.3:78895844-78895863 | MS.gene31028:intron | 40.0% | |
| ! | CATGTATTTTGTGGGTCATG+AGG | + | chr3.3:78895953-78895972 | MS.gene31028:intron | 40.0% |
| ! | GTGGGAGCTAATAAAAGTGT+GGG | + | chr3.3:78896186-78896205 | MS.gene31028:intron | 40.0% |
| ! | GTTTTTGAACAGCTGTTGCA+AGG | - | chr3.3:78894655-78894674 | None:intergenic | 40.0% |
| ! | TGGGAGCTAATAAAAGTGTG+GGG | + | chr3.3:78896187-78896206 | MS.gene31028:intron | 40.0% |
| ! | TGTATTTTGTGGGTCATGAG+GGG | + | chr3.3:78895955-78895974 | MS.gene31028:intron | 40.0% |
| ! | TGTTGGATGATGGTTACAAG+TGG | + | chr3.3:78895365-78895384 | MS.gene31028:CDS | 40.0% |
| !!! | CTTACTTCTAGTTTTGGAGG+AGG | + | chr3.3:78894695-78894714 | MS.gene31028:CDS | 40.0% |
| AAGGTCATGTTTGGAGGGAA+AGG | - | chr3.3:78894533-78894552 | None:intergenic | 45.0% | |
| CGCTCATAATTCATCCACCT+AGG | - | chr3.3:78895983-78896002 | None:intergenic | 45.0% | |
| GAGGTAAGGTCATGTTTGGA+GGG | - | chr3.3:78894538-78894557 | None:intergenic | 45.0% | |
| GAGTAAAGAAACGTGTGGAG+CGG | + | chr3.3:78896532-78896551 | MS.gene31028:CDS | 45.0% | |
| GCTATAGTTCACATGCATGG+TGG | - | chr3.3:78894796-78894815 | None:intergenic | 45.0% | |
| GCTTCAGGAGAAAGTGATGA+AGG | - | chr3.3:78894611-78894630 | None:intergenic | 45.0% | |
| GGTTACAAGTGGAGGAAGTA+CGG | + | chr3.3:78895376-78895395 | MS.gene31028:CDS | 45.0% | |
| GTGGCTATAGTTCACATGCA+TGG | - | chr3.3:78894799-78894818 | None:intergenic | 45.0% | |
| TTGAACAGCTGTTGCAAGGA+GGG | - | chr3.3:78894651-78894670 | None:intergenic | 45.0% | |
| TTTGAACAGCTGTTGCAAGG+AGG | - | chr3.3:78894652-78894671 | None:intergenic | 45.0% | |
| ! | TGGATGATGGTTACAAGTGG+AGG | + | chr3.3:78895368-78895387 | MS.gene31028:CDS | 45.0% |
| !!! | ACTTCTAGTTTTGGAGGAGG+AGG | + | chr3.3:78894698-78894717 | MS.gene31028:CDS | 45.0% |
| !! | ATATATATATATATATATGT+AGG | + | chr3.3:78894958-78894977 | MS.gene31028:intron | 5.0% |
| !! | TATATTTAATAAAAATTAAG+TGG | - | chr3.3:78894818-78894837 | None:intergenic | 5.0% |
| AAAGAAACGTGTGGAGCGGT+TGG | + | chr3.3:78896536-78896555 | MS.gene31028:CDS | 50.0% | |
| CTTCAAGACTATGAGCGACG+TGG | + | chr3.3:78895339-78895358 | MS.gene31028:CDS | 50.0% | |
| GAAGGGAAGAAGGAAGGTGA+GGG | + | chr3.3:78895303-78895322 | MS.gene31028:CDS | 50.0% | |
| GACGTGGATGTGTTGGATGA+TGG | + | chr3.3:78895355-78895374 | MS.gene31028:CDS | 50.0% | |
| GGAGGTAAGGTCATGTTTGG+AGG | - | chr3.3:78894539-78894558 | None:intergenic | 50.0% | |
| GTTGGCTGAGGATCCAAGAA+TGG | + | chr3.3:78896554-78896573 | MS.gene31028:CDS | 50.0% | |
| TATGAGCGACGTGGATGTGT+TGG | + | chr3.3:78895348-78895367 | MS.gene31028:CDS | 50.0% | |
| TGAAGGGAAGAAGGAAGGTG+AGG | + | chr3.3:78895302-78895321 | MS.gene31028:CDS | 50.0% | |
| ! | GAGGAAGTACGGACAGAAAG+TGG | + | chr3.3:78895387-78895406 | MS.gene31028:CDS | 50.0% |
| GAAGGAAGGTGAGGGAGCCT+AGG | + | chr3.3:78895311-78895330 | MS.gene31028:CDS | 60.0% | |
| ! | GAGTGGGAGCGTGTCGAGAT+GGG | - | chr3.3:78896016-78896035 | None:intergenic | 60.0% |
| ! | TGAGTGGGAGCGTGTCGAGA+TGG | - | chr3.3:78896017-78896036 | None:intergenic | 60.0% |
| GGTCATGAGGGGAGCCTAGG+TGG | + | chr3.3:78895966-78895985 | MS.gene31028:intron | 65.0% | |
| GTGGGTCATGAGGGGAGCCT+AGG | + | chr3.3:78895963-78895982 | MS.gene31028:intron | 65.0% | |
| ! | ACGTGTGGAGCGGTTGGCTG+AGG | + | chr3.3:78896542-78896561 | MS.gene31028:CDS | 65.0% |
| ! | TGGGAGCGTGTCGAGATGGG+TGG | - | chr3.3:78896013-78896032 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 78894475 | 78896671 | 78894475 | ID=MS.gene31028 |
| chr3.3 | mRNA | 78894475 | 78896671 | 78894475 | ID=MS.gene31028.t1;Parent=MS.gene31028 |
| chr3.3 | exon | 78894475 | 78894759 | 78894475 | ID=MS.gene31028.t1.exon1;Parent=MS.gene31028.t1 |
| chr3.3 | CDS | 78894475 | 78894759 | 78894475 | ID=cds.MS.gene31028.t1;Parent=MS.gene31028.t1 |
| chr3.3 | exon | 78895189 | 78895431 | 78895189 | ID=MS.gene31028.t1.exon2;Parent=MS.gene31028.t1 |
| chr3.3 | CDS | 78895189 | 78895431 | 78895189 | ID=cds.MS.gene31028.t1;Parent=MS.gene31028.t1 |
| chr3.3 | exon | 78896500 | 78896671 | 78896500 | ID=MS.gene31028.t1.exon3;Parent=MS.gene31028.t1 |
| chr3.3 | CDS | 78896500 | 78896671 | 78896500 | ID=cds.MS.gene31028.t1;Parent=MS.gene31028.t1 |
| Gene Sequence |
| Protein sequence |
