Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31520.t1 | XP_013465033.1 | 95.4 | 502 | 22 | 1 | 1 | 502 | 1 | 501 | 5.10E-259 | 903.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31520.t1 | Q8S8I1 | 38.0 | 366 | 190 | 8 | 150 | 479 | 101 | 465 | 5.3e-55 | 216.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31520.t1 | A0A072VC90 | 95.4 | 502 | 22 | 1 | 1 | 502 | 1 | 501 | 3.7e-259 | 903.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049501 | MS.gene31520 | 0.800609 | 1.33E-48 | -1.69E-46 |
| MS.gene051265 | MS.gene31520 | 0.814898 | 1.22E-51 | -1.69E-46 |
| MS.gene05288 | MS.gene31520 | 0.84479 | 6.08E-59 | -1.69E-46 |
| MS.gene05289 | MS.gene31520 | 0.813764 | 2.17E-51 | -1.69E-46 |
| MS.gene053074 | MS.gene31520 | 0.825527 | 4.47E-54 | -1.69E-46 |
| MS.gene05468 | MS.gene31520 | 0.803301 | 3.72E-49 | -1.69E-46 |
| MS.gene054713 | MS.gene31520 | 0.865576 | 5.34E-65 | -1.69E-46 |
| MS.gene055357 | MS.gene31520 | 0.803855 | 2.86E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene31520 | 0.825425 | 4.72E-54 | -1.69E-46 |
| MS.gene055860 | MS.gene31520 | 0.871784 | 5.25E-67 | -1.69E-46 |
| MS.gene058042 | MS.gene31520 | 0.830904 | 2.26E-55 | -1.69E-46 |
| MS.gene058168 | MS.gene31520 | 0.841261 | 5.29E-58 | -1.69E-46 |
| MS.gene059006 | MS.gene31520 | 0.805493 | 1.30E-49 | -1.69E-46 |
| MS.gene059124 | MS.gene31520 | 0.808058 | 3.73E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene31520 | 0.809184 | 2.14E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31520.t1 | MTR_2g090050 | 95.418 | 502 | 22 | 1 | 1 | 502 | 1 | 501 | 0.0 | 954 |
| MS.gene31520.t1 | MTR_1g106735 | 28.807 | 243 | 169 | 3 | 245 | 484 | 369 | 610 | 8.10e-28 | 117 |
| MS.gene31520.t1 | MTR_1g018440 | 28.490 | 351 | 215 | 8 | 150 | 492 | 299 | 621 | 1.26e-26 | 114 |
| MS.gene31520.t1 | MTR_1g106735 | 28.689 | 244 | 169 | 4 | 245 | 484 | 369 | 611 | 2.91e-26 | 112 |
| MS.gene31520.t1 | MTR_4g130490 | 32.889 | 225 | 134 | 3 | 265 | 485 | 399 | 610 | 3.08e-26 | 112 |
| MS.gene31520.t1 | MTR_4g130490 | 33.824 | 204 | 118 | 3 | 265 | 464 | 399 | 589 | 4.27e-23 | 103 |
| MS.gene31520.t1 | MTR_2g028220 | 27.273 | 198 | 144 | 0 | 287 | 484 | 283 | 480 | 1.88e-19 | 91.7 |
| MS.gene31520.t1 | MTR_4g130490 | 34.932 | 146 | 78 | 3 | 265 | 406 | 399 | 531 | 8.76e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31520.t1 | AT2G20815 | 37.838 | 370 | 191 | 9 | 150 | 482 | 101 | 468 | 4.39e-73 | 239 |
| MS.gene31520.t1 | AT2G20815 | 37.736 | 371 | 191 | 10 | 150 | 482 | 72 | 440 | 1.68e-71 | 234 |
| MS.gene31520.t1 | AT2G20815 | 37.736 | 371 | 191 | 10 | 150 | 482 | 101 | 469 | 2.45e-71 | 235 |
| MS.gene31520.t1 | AT2G20815 | 32.961 | 358 | 177 | 9 | 150 | 482 | 72 | 391 | 3.32e-53 | 185 |
| MS.gene31520.t1 | AT2G24070 | 32.877 | 219 | 137 | 1 | 265 | 483 | 376 | 584 | 4.44e-29 | 121 |
| MS.gene31520.t1 | AT2G24070 | 32.877 | 219 | 137 | 1 | 265 | 483 | 376 | 584 | 4.44e-29 | 121 |
| MS.gene31520.t1 | AT2G24070 | 32.877 | 219 | 137 | 1 | 265 | 483 | 376 | 584 | 4.44e-29 | 121 |
| MS.gene31520.t1 | AT4G30710 | 32.273 | 220 | 137 | 3 | 265 | 483 | 412 | 620 | 3.84e-28 | 119 |
| MS.gene31520.t1 | AT4G30710 | 32.273 | 220 | 137 | 3 | 265 | 483 | 412 | 620 | 3.84e-28 | 119 |
| MS.gene31520.t1 | AT4G30710 | 32.273 | 220 | 137 | 3 | 265 | 483 | 412 | 620 | 1.49e-27 | 117 |
| MS.gene31520.t1 | AT4G25190 | 28.832 | 274 | 165 | 5 | 239 | 489 | 128 | 394 | 6.40e-26 | 109 |
| MS.gene31520.t1 | AT4G30710 | 32.227 | 211 | 131 | 3 | 265 | 474 | 412 | 611 | 1.05e-25 | 111 |
| MS.gene31520.t1 | AT4G25190 | 28.727 | 275 | 165 | 6 | 239 | 489 | 128 | 395 | 2.15e-24 | 105 |
| MS.gene31520.t1 | AT1G49890 | 28.794 | 257 | 157 | 5 | 244 | 484 | 400 | 646 | 1.79e-23 | 104 |
| MS.gene31520.t1 | AT3G19570 | 28.646 | 192 | 137 | 0 | 293 | 484 | 450 | 641 | 6.24e-23 | 102 |
| MS.gene31520.t1 | AT5G43160 | 28.889 | 180 | 128 | 0 | 306 | 485 | 82 | 261 | 1.25e-20 | 92.0 |
| MS.gene31520.t1 | AT5G43160 | 28.889 | 180 | 128 | 0 | 306 | 485 | 82 | 261 | 1.25e-20 | 92.0 |
| MS.gene31520.t1 | AT3G19570 | 30.233 | 172 | 120 | 0 | 293 | 464 | 450 | 621 | 6.74e-20 | 93.6 |
| MS.gene31520.t1 | AT3G60000 | 27.835 | 194 | 136 | 2 | 292 | 483 | 250 | 441 | 3.68e-18 | 87.4 |
| MS.gene31520.t1 | AT3G60000 | 28.994 | 169 | 116 | 2 | 292 | 458 | 250 | 416 | 7.28e-16 | 80.1 |
| MS.gene31520.t1 | AT2G44190 | 26.866 | 201 | 143 | 2 | 287 | 485 | 264 | 462 | 8.54e-16 | 80.1 |
| MS.gene31520.t1 | AT3G19570 | 31.724 | 145 | 99 | 0 | 293 | 437 | 450 | 594 | 2.25e-15 | 79.3 |
| MS.gene31520.t1 | AT3G19570 | 31.724 | 145 | 99 | 0 | 293 | 437 | 450 | 594 | 2.25e-15 | 79.3 |
Find 101 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGTTAACATTGACTTAA+TGG | 0.231221 | 2.4:+11042385 | None:intergenic |
| AATTCACCATCGAATGGTTT+TGG | 0.272527 | 2.4:-11043425 | MS.gene31520:CDS |
| CAAACGTTCTAATCTCTCTA+TGG | 0.280044 | 2.4:+11043945 | None:intergenic |
| AAGAAGCTTAATTCTAATAA+TGG | 0.280763 | 2.4:-11043851 | MS.gene31520:CDS |
| TGTGTCTCCTATCGTCTTCC+TGG | 0.281185 | 2.4:+11044137 | None:intergenic |
| TTCAACTCCTTTCGCCTTTG+TGG | 0.332527 | 2.4:+11043502 | None:intergenic |
| AACCATTCGATGGTGAATTA+AGG | 0.340592 | 2.4:+11043429 | None:intergenic |
| TCATCCAAGGAAAACCTTCC+CGG | 0.341093 | 2.4:+11043815 | None:intergenic |
| ACAAGAGCAATTGGTGGTTC+TGG | 0.341427 | 2.4:-11043911 | MS.gene31520:CDS |
| TCAACTCCTTTCGCCTTTGT+GGG | 0.346043 | 2.4:+11043503 | None:intergenic |
| TAATGGTTCAGGCATTGTTC+CGG | 0.354864 | 2.4:-11043834 | MS.gene31520:CDS |
| CTTAATTCTAATAATGGTTC+AGG | 0.357073 | 2.4:-11043845 | MS.gene31520:CDS |
| GTTAAAGTTATTGGAAGCTT+GGG | 0.357089 | 2.4:-11042792 | MS.gene31520:CDS |
| CATAACAGTATTTCTGAACT+TGG | 0.357992 | 2.4:+11042973 | None:intergenic |
| CAATGAAGCTTTGGCTTCTC+CGG | 0.358325 | 2.4:-11043732 | MS.gene31520:CDS |
| AGGAAATTCAGTGGATTCTA+TGG | 0.360707 | 2.4:+11044198 | None:intergenic |
| TTGTTCTATAATTCTATCTT+CGG | 0.365225 | 2.4:+11044027 | None:intergenic |
| TGCTGCAATACTATCAGAAT+TGG | 0.365699 | 2.4:-11041865 | MS.gene31520:CDS |
| AGCAGAATGCAAACACTCTT+TGG | 0.368717 | 2.4:+11042730 | None:intergenic |
| GCCTGGTTCAATTTGAAGAT+TGG | 0.377854 | 2.4:-11041639 | MS.gene31520:CDS |
| AGAGCAATTTGATATGTGTC+TGG | 0.382143 | 2.4:-11043006 | MS.gene31520:CDS |
| AATGGTTCAGGCATTGTTCC+GGG | 0.388413 | 2.4:-11043833 | MS.gene31520:CDS |
| CAAAGCTTCATTGTTGGATT+CGG | 0.388717 | 2.4:+11043742 | None:intergenic |
| ACTGCTAGGGATTACTTCAT+AGG | 0.393630 | 2.4:-11041590 | None:intergenic |
| TACATCCATTGCTATTCGTC+AGG | 0.402804 | 2.4:-11042426 | MS.gene31520:CDS |
| AATGATCAAACAAGAGCAAT+TGG | 0.411484 | 2.4:-11043920 | MS.gene31520:CDS |
| CGAATCCAACAATGAAGCTT+TGG | 0.417224 | 2.4:-11043741 | MS.gene31520:CDS |
| GCATCACTCATCAACCTTGT+AGG | 0.424035 | 2.4:+11043686 | None:intergenic |
| AGTTAAAGTTATTGGAAGCT+TGG | 0.426135 | 2.4:-11042793 | MS.gene31520:CDS |
| GAAGAGGACTAATTCGATTA+CGG | 0.428004 | 2.4:-11043585 | MS.gene31520:CDS |
| AAGAGGACTAATTCGATTAC+GGG | 0.433019 | 2.4:-11043584 | MS.gene31520:CDS |
| CAAGTCATCGATTCAGAGCC+AGG | 0.435846 | 2.4:-11044155 | MS.gene31520:CDS |
| AGATGTTCATAAGCTTCGTT+TGG | 0.444101 | 2.4:-11043393 | MS.gene31520:CDS |
| TGTGTGCAGAGTTCCTCTTT+TGG | 0.450064 | 2.4:-11042708 | MS.gene31520:CDS |
| AGAAGCCAAAGCTTCATTGT+TGG | 0.458888 | 2.4:+11043736 | None:intergenic |
| TCACAGTGGGCTTTGTCACC+AGG | 0.459279 | 2.4:-11043545 | MS.gene31520:CDS |
| GGAGCTTCTGATTCTAACAT+TGG | 0.470930 | 2.4:-11043641 | MS.gene31520:CDS |
| CTTTGTTGACGAGGGTTCAC+CGG | 0.482670 | 2.4:+11044247 | None:intergenic |
| CTGTTCTACGTCGTCAACTC+TGG | 0.489175 | 2.4:-11044096 | MS.gene31520:CDS |
| CAACTGCAGGATTTACTGCT+AGG | 0.490974 | 2.4:-11041604 | MS.gene31520:CDS |
| TTCTATGGAGGTGGAAGGCG+AGG | 0.496580 | 2.4:+11044213 | None:intergenic |
| TTGATAATCGTTTGATTCAG+TGG | 0.496593 | 2.4:-11043370 | MS.gene31520:CDS |
| TTCAGTGGATTCTATGGAGG+TGG | 0.499093 | 2.4:+11044204 | None:intergenic |
| TTCAATTTGAAGATTGGCAA+AGG | 0.500856 | 2.4:-11041633 | MS.gene31520:CDS |
| ACCTTAGCACCTTCCAAAAG+AGG | 0.508872 | 2.4:+11042695 | None:intergenic |
| CTTGTAGGAACTTCCACCAC+TGG | 0.509361 | 2.4:+11043701 | None:intergenic |
| GGTGGTTCTGGAAGATTCAC+AGG | 0.510011 | 2.4:-11043899 | MS.gene31520:CDS |
| GACTTGCGTATGACGGAGGA+AGG | 0.513844 | 2.4:+11044172 | None:intergenic |
| GCCAATCTTCAAATTGAACC+AGG | 0.515880 | 2.4:+11041638 | None:intergenic |
| GAGCTTCTGATTCTAACATT+GGG | 0.516533 | 2.4:-11043640 | MS.gene31520:CDS |
| ACATAACATATCTGTTGTTG+AGG | 0.527727 | 2.4:-11041790 | MS.gene31520:intron |
| GAATTAGTCCTCTTCATCAT+CGG | 0.532045 | 2.4:+11043593 | None:intergenic |
| CTTGAAAACTCTGACCTCCC+TGG | 0.540193 | 2.4:+11043527 | None:intergenic |
| CTTGCGTATGACGGAGGAAG+GGG | 0.541168 | 2.4:+11044174 | None:intergenic |
| GGCCTTAATTCACCATCGAA+TGG | 0.542030 | 2.4:-11043431 | MS.gene31520:CDS |
| GAAGTGTTTCGCGCCTTCAT+CGG | 0.542889 | 2.4:+11044271 | None:intergenic |
| CGTTGAAACCGATGATGAAG+AGG | 0.543848 | 2.4:-11043601 | MS.gene31520:CDS |
| CAACTCCTTTCGCCTTTGTG+GGG | 0.545829 | 2.4:+11043504 | None:intergenic |
| ATTGGAAGCTTGGGGAAGCA+TGG | 0.549278 | 2.4:-11042783 | MS.gene31520:CDS |
| TGAACCCTCGTCAACAAAGA+AGG | 0.550286 | 2.4:-11044243 | MS.gene31520:CDS |
| GCAAAGGAAATATCAACTGC+AGG | 0.551022 | 2.4:-11041617 | MS.gene31520:CDS |
| TCTAACATTGGGAATTTGAA+CGG | 0.552992 | 2.4:-11043629 | MS.gene31520:CDS |
| AACTGCAGGATTTACTGCTA+GGG | 0.555292 | 2.4:-11041603 | MS.gene31520:CDS |
| TTGTTTCCAAAACCATTCGA+TGG | 0.559989 | 2.4:+11043419 | None:intergenic |
| TTCAGAGCCAGGAAGACGAT+AGG | 0.569143 | 2.4:-11044144 | MS.gene31520:CDS |
| AATCGATGACTTGCGTATGA+CGG | 0.572620 | 2.4:+11044165 | None:intergenic |
| TCAAGCCCCACAAAGGCGAA+AGG | 0.573131 | 2.4:-11043509 | MS.gene31520:CDS |
| GAGCAATTTGATATGTGTCT+GGG | 0.582338 | 2.4:-11043005 | MS.gene31520:CDS |
| TCCGGCAAGAAAACCAGTGG+TGG | 0.587118 | 2.4:-11043714 | MS.gene31520:CDS |
| GAAACCTTCTTTGTTGACGA+GGG | 0.587157 | 2.4:+11044239 | None:intergenic |
| GTTCAGGCATTGTTCCGGGA+AGG | 0.588050 | 2.4:-11043829 | MS.gene31520:CDS |
| CACAGTGGGCTTTGTCACCA+GGG | 0.588640 | 2.4:-11043544 | MS.gene31520:CDS |
| AGAATGCAAACACTCTTTGG+TGG | 0.589899 | 2.4:+11042733 | None:intergenic |
| AAGCAGTGTAAAGTGCAGCC+TGG | 0.591075 | 2.4:-11041656 | MS.gene31520:CDS |
| AAATTCAAGTATAACTAGCT+CGG | 0.591285 | 2.4:-11043771 | MS.gene31520:CDS |
| CAGTGGTGGAAGTTCCTACA+AGG | 0.591497 | 2.4:-11043700 | MS.gene31520:CDS |
| GAAGGCGCGAAACACTTCTC+CGG | 0.599113 | 2.4:-11044266 | MS.gene31520:CDS |
| ACTTGCGTATGACGGAGGAA+GGG | 0.602214 | 2.4:+11044173 | None:intergenic |
| AGAAACCTTCTTTGTTGACG+AGG | 0.602654 | 2.4:+11044238 | None:intergenic |
| GATCAAACAAGAGCAATTGG+TGG | 0.611838 | 2.4:-11043917 | MS.gene31520:CDS |
| AGAGGCCTGACGAATAGCAA+TGG | 0.620659 | 2.4:+11042421 | None:intergenic |
| GTGGATTCTATGGAGGTGGA+AGG | 0.624761 | 2.4:+11044208 | None:intergenic |
| CGATGACTTGCGTATGACGG+AGG | 0.625049 | 2.4:+11044168 | None:intergenic |
| TTAAAGTTATTGGAAGCTTG+GGG | 0.630426 | 2.4:-11042791 | MS.gene31520:CDS |
| AAGCTTGGGGAAGCATGGAA+AGG | 0.635943 | 2.4:-11042778 | MS.gene31520:CDS |
| AATGGAAGCTGCGAGATCAG+AGG | 0.638515 | 2.4:+11042403 | None:intergenic |
| TGAGTGATGCAACATTGAGA+AGG | 0.641073 | 2.4:-11043673 | MS.gene31520:CDS |
| CAAGAGTTCGAAATCACAGT+GGG | 0.647303 | 2.4:-11043558 | MS.gene31520:CDS |
| ACATTGAGAAGGGCTAGAAG+AGG | 0.654076 | 2.4:-11043662 | MS.gene31520:CDS |
| TTCTCCGGCAAGAAAACCAG+TGG | 0.654553 | 2.4:-11043717 | MS.gene31520:CDS |
| TCTATGGAGGTGGAAGGCGA+GGG | 0.655607 | 2.4:+11044214 | None:intergenic |
| AAATTCAGTGGATTCTATGG+AGG | 0.656704 | 2.4:+11044201 | None:intergenic |
| GAGTGATGCAACATTGAGAA+GGG | 0.656920 | 2.4:-11043672 | MS.gene31520:CDS |
| CGTATGACGGAGGAAGGGGA+AGG | 0.662645 | 2.4:+11044178 | None:intergenic |
| GGAAGGGGAAGGAAATTCAG+TGG | 0.670014 | 2.4:+11044189 | None:intergenic |
| AATTTGATATGTGTCTGGGA+TGG | 0.675214 | 2.4:-11043001 | MS.gene31520:CDS |
| CAAACAAGTGTACCTCGGTG+TGG | 0.734371 | 2.4:+11043300 | None:intergenic |
| AGTGGGCTTTGTCACCAGGG+AGG | 0.741250 | 2.4:-11043541 | MS.gene31520:CDS |
| ACAAGAGTTCGAAATCACAG+TGG | 0.753232 | 2.4:-11043559 | MS.gene31520:CDS |
| AGAGGACTAATTCGATTACG+GGG | 0.771281 | 2.4:-11043583 | MS.gene31520:CDS |
| AAACATTTCTCGCCACACCG+AGG | 0.776407 | 2.4:-11043312 | MS.gene31520:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATATAAAAAAAATTCAA+CGG | + | chr2.4:11043330-11043349 | None:intergenic | 10.0% |
| !! | ATGATTAATTGAATATAAAA+AGG | - | chr2.4:11043630-11043649 | MS.gene31520:CDS | 10.0% |
| !! | ATTAATTACAAAAACAAATT+TGG | + | chr2.4:11043011-11043030 | None:intergenic | 10.0% |
| !!! | AAATCCTTTTAATTTATTTA+TGG | - | chr2.4:11044140-11044159 | MS.gene31520:CDS | 10.0% |
| !!! | TTAATATTTGAAATTGTTAA+CGG | + | chr2.4:11043283-11043302 | None:intergenic | 10.0% |
| !! | AAATTGAATTAACATTATCT+TGG | - | chr2.4:11042815-11042834 | MS.gene31520:intron | 15.0% |
| !! | TCAACCATAAATAAATTAAA+AGG | + | chr2.4:11044147-11044166 | None:intergenic | 15.0% |
| !!! | CGTTTAAAAATTTAAAATCA+TGG | + | chr2.4:11043693-11043712 | None:intergenic | 15.0% |
| !! | AAATCATGGTTAATTATGTT+CGG | + | chr2.4:11043679-11043698 | None:intergenic | 20.0% |
| !! | AAGAAGCTTAATTCTAATAA+TGG | - | chr2.4:11042008-11042027 | MS.gene31520:intron | 20.0% |
| !! | AATAAATGGTTAACTACATT+CGG | - | chr2.4:11043604-11043623 | MS.gene31520:CDS | 20.0% |
| !! | GTTAATGCAATTCAAATAAA+TGG | - | chr2.4:11043590-11043609 | MS.gene31520:CDS | 20.0% |
| !! | TCATAAATTTGACAATAATG+TGG | - | chr2.4:11043564-11043583 | MS.gene31520:CDS | 20.0% |
| !! | TTGTTCTATAATTCTATCTT+CGG | + | chr2.4:11041835-11041854 | None:intergenic | 20.0% |
| !!! | AACTGATTTATTGTTGTTTT+TGG | - | chr2.4:11043042-11043061 | MS.gene31520:intron | 20.0% |
| !!! | AAGTGATATTTTTCGATTTA+AGG | - | chr2.4:11043213-11043232 | MS.gene31520:intron | 20.0% |
| !!! | AGTGATATTTTTCGATTTAA+GGG | - | chr2.4:11043214-11043233 | MS.gene31520:intron | 20.0% |
| !!! | GATTTTATCACTATATATGT+TGG | - | chr2.4:11044169-11044188 | MS.gene31520:CDS | 20.0% |
| ! | AAATTCAAGTATAACTAGCT+CGG | - | chr2.4:11042088-11042107 | MS.gene31520:intron | 25.0% |
| ! | ATAATCTAAGTGATCATGAT+AGG | - | chr2.4:11043355-11043374 | MS.gene31520:CDS | 25.0% |
| ! | ATTGTGCTAGTCATTTATTA+CGG | - | chr2.4:11043525-11043544 | MS.gene31520:CDS | 25.0% |
| ! | CAACTTATGAAAACAACTTA+CGG | + | chr2.4:11042623-11042642 | None:intergenic | 25.0% |
| ! | CTTAATTCTAATAATGGTTC+AGG | - | chr2.4:11042014-11042033 | MS.gene31520:intron | 25.0% |
| ! | GGCAGATATTAATCAAAATT+TGG | + | chr2.4:11042990-11043009 | None:intergenic | 25.0% |
| ! | TAATCTAAGTGATCATGATA+GGG | - | chr2.4:11043356-11043375 | MS.gene31520:CDS | 25.0% |
| ! | TGTTGAAATAAACTGAAACT+AGG | - | chr2.4:11042654-11042673 | MS.gene31520:intron | 25.0% |
| ! | TTCAAGAGTAAAAAATCTGT+TGG | - | chr2.4:11042407-11042426 | MS.gene31520:CDS | 25.0% |
| !! | GTTGAAAAACTACTCAATTT+TGG | - | chr2.4:11042374-11042393 | MS.gene31520:CDS | 25.0% |
| !! | TATTTGAAATTGTTAACGGT+CGG | + | chr2.4:11043279-11043298 | None:intergenic | 25.0% |
| !!! | AGAAGTTAACATTGACTTAA+TGG | + | chr2.4:11043477-11043496 | None:intergenic | 25.0% |
| !!! | TTCTCTTTTGCTATATATGA+AGG | - | chr2.4:11043926-11043945 | MS.gene31520:CDS | 25.0% |
| !!! | TTTTTGGCAGTTAAAGTTAT+TGG | - | chr2.4:11043058-11043077 | MS.gene31520:intron | 25.0% |
| AATGATCAAACAAGAGCAAT+TGG | - | chr2.4:11041939-11041958 | MS.gene31520:intron | 30.0% | |
| ACATAACATATCTGTTGTTG+AGG | - | chr2.4:11044069-11044088 | MS.gene31520:CDS | 30.0% | |
| AGTTAAAGTTATTGGAAGCT+TGG | - | chr2.4:11043066-11043085 | MS.gene31520:intron | 30.0% | |
| ATATGAAGGCTTCATTCATA+TGG | - | chr2.4:11043940-11043959 | MS.gene31520:CDS | 30.0% | |
| ATTTGAAAACATGCAAATCG+TGG | - | chr2.4:11043765-11043784 | MS.gene31520:CDS | 30.0% | |
| CCTGTAAGTTAAGCATAAAA+AGG | + | chr2.4:11043400-11043419 | None:intergenic | 30.0% | |
| CGCAAAATTTGACAACAATT+TGG | + | chr2.4:11043894-11043913 | None:intergenic | 30.0% | |
| CTGTATATTTGAACGCAATT+TGG | - | chr2.4:11043720-11043739 | MS.gene31520:CDS | 30.0% | |
| GTTAAAGTTATTGGAAGCTT+GGG | - | chr2.4:11043067-11043086 | MS.gene31520:intron | 30.0% | |
| GTTTATTTCAACAAGTGTTC+CGG | + | chr2.4:11042647-11042666 | None:intergenic | 30.0% | |
| TCTAACATTGGGAATTTGAA+CGG | - | chr2.4:11042230-11042249 | MS.gene31520:intron | 30.0% | |
| TTAAAGTTATTGGAAGCTTG+GGG | - | chr2.4:11043068-11043087 | MS.gene31520:intron | 30.0% | |
| TTCAATTTGAAGATTGGCAA+AGG | - | chr2.4:11044226-11044245 | MS.gene31520:CDS | 30.0% | |
| TTGTGCTAGTCATTTATTAC+GGG | - | chr2.4:11043526-11043545 | MS.gene31520:CDS | 30.0% | |
| ! | CATAACAGTATTTCTGAACT+TGG | + | chr2.4:11042889-11042908 | None:intergenic | 30.0% |
| ! | CCTTTTTATGCTTAACTTAC+AGG | - | chr2.4:11043397-11043416 | MS.gene31520:CDS | 30.0% |
| ! | TTGATAATCGTTTGATTCAG+TGG | - | chr2.4:11042489-11042508 | MS.gene31520:intron | 30.0% |
| !! | AGTTGTTTTCATAAGTTGTC+CGG | - | chr2.4:11042625-11042644 | MS.gene31520:intron | 30.0% |
| !! | ATTGCTATTTCACAAACTTG+AGG | - | chr2.4:11043242-11043261 | MS.gene31520:intron | 30.0% |
| !! | TATTACGGGTTGTGTAATTT+TGG | - | chr2.4:11043540-11043559 | MS.gene31520:CDS | 30.0% |
| !! | TTGCTATTTCACAAACTTGA+GGG | - | chr2.4:11043243-11043262 | MS.gene31520:intron | 30.0% |
| AACCATTCGATGGTGAATTA+AGG | + | chr2.4:11042433-11042452 | None:intergenic | 35.0% | |
| AAGAGGACTAATTCGATTAC+GGG | - | chr2.4:11042275-11042294 | MS.gene31520:intron | 35.0% | |
| AATTTGATATGTGTCTGGGA+TGG | - | chr2.4:11042858-11042877 | MS.gene31520:intron | 35.0% | |
| AGAGCAATTTGATATGTGTC+TGG | - | chr2.4:11042853-11042872 | MS.gene31520:intron | 35.0% | |
| AGATGTTCATAAGCTTCGTT+TGG | - | chr2.4:11042466-11042485 | MS.gene31520:intron | 35.0% | |
| CAAACGTTCTAATCTCTCTA+TGG | + | chr2.4:11041917-11041936 | None:intergenic | 35.0% | |
| CAAAGCTTCATTGTTGGATT+CGG | + | chr2.4:11042120-11042139 | None:intergenic | 35.0% | |
| GAAGAGGACTAATTCGATTA+CGG | - | chr2.4:11042274-11042293 | MS.gene31520:intron | 35.0% | |
| GAATTAGTCCTCTTCATCAT+CGG | + | chr2.4:11042269-11042288 | None:intergenic | 35.0% | |
| GAGCAATTTGATATGTGTCT+GGG | - | chr2.4:11042854-11042873 | MS.gene31520:intron | 35.0% | |
| GAGCTTCTGATTCTAACATT+GGG | - | chr2.4:11042219-11042238 | MS.gene31520:intron | 35.0% | |
| GCTAAACATCGTGGTTAATT+TGG | - | chr2.4:11043796-11043815 | MS.gene31520:CDS | 35.0% | |
| GGAAAAATTTCTCTGTCAAC+AGG | - | chr2.4:11043961-11043980 | MS.gene31520:CDS | 35.0% | |
| TCATGGTTAATTATGTTCGG+TGG | + | chr2.4:11043676-11043695 | None:intergenic | 35.0% | |
| TCTTCTGCGAAAAATAAGTC+TGG | - | chr2.4:11041789-11041808 | MS.gene31520:intron | 35.0% | |
| TGCTGCAATACTATCAGAAT+TGG | - | chr2.4:11043994-11044013 | MS.gene31520:CDS | 35.0% | |
| TTAGACAAACAAGTGTACCT+CGG | + | chr2.4:11042567-11042586 | None:intergenic | 35.0% | |
| TTGTTTCCAAAACCATTCGA+TGG | + | chr2.4:11042443-11042462 | None:intergenic | 35.0% | |
| ! | AAATTCAGTGGATTCTATGG+AGG | + | chr2.4:11041661-11041680 | None:intergenic | 35.0% |
| ! | AATTCACCATCGAATGGTTT+TGG | - | chr2.4:11042434-11042453 | MS.gene31520:CDS | 35.0% |
| ! | AGGAAATTCAGTGGATTCTA+TGG | + | chr2.4:11041664-11041683 | None:intergenic | 35.0% |
| ! | CAGTTTAGCATTTTCATCCA+AGG | + | chr2.4:11042060-11042079 | None:intergenic | 35.0% |
| ! | TTTTTCACCTGCAGTAAGTT+TGG | - | chr2.4:11043496-11043515 | MS.gene31520:CDS | 35.0% |
| !! | ATGCTCTAAGACAAGATAAG+TGG | - | chr2.4:11042729-11042748 | MS.gene31520:CDS | 35.0% |
| !! | GACTTATTTTTCGCAGAAGA+AGG | + | chr2.4:11041789-11041808 | None:intergenic | 35.0% |
| AACGCAATTTGGATAGTCAG+TGG | - | chr2.4:11043731-11043750 | MS.gene31520:CDS | 40.0% | |
| AACTGCAGGATTTACTGCTA+GGG | - | chr2.4:11044256-11044275 | MS.gene31520:CDS | 40.0% | |
| ACAAGAGTTCGAAATCACAG+TGG | - | chr2.4:11042300-11042319 | MS.gene31520:intron | 40.0% | |
| AGAAACCTTCTTTGTTGACG+AGG | + | chr2.4:11041624-11041643 | None:intergenic | 40.0% | |
| AGAAGCCAAAGCTTCATTGT+TGG | + | chr2.4:11042126-11042145 | None:intergenic | 40.0% | |
| AGAATGCAAACACTCTTTGG+TGG | + | chr2.4:11043129-11043148 | None:intergenic | 40.0% | |
| AGAGGACTAATTCGATTACG+GGG | - | chr2.4:11042276-11042295 | MS.gene31520:intron | 40.0% | |
| AGCAGAATGCAAACACTCTT+TGG | + | chr2.4:11043132-11043151 | None:intergenic | 40.0% | |
| CAAGAGTTCGAAATCACAGT+GGG | - | chr2.4:11042301-11042320 | MS.gene31520:intron | 40.0% | |
| CGAATCCAACAATGAAGCTT+TGG | - | chr2.4:11042118-11042137 | MS.gene31520:intron | 40.0% | |
| CTAAGTGATCATGATAGGGA+TGG | - | chr2.4:11043360-11043379 | MS.gene31520:CDS | 40.0% | |
| GAAACCTTCTTTGTTGACGA+GGG | + | chr2.4:11041623-11041642 | None:intergenic | 40.0% | |
| GAGTGATGCAACATTGAGAA+GGG | - | chr2.4:11042187-11042206 | MS.gene31520:intron | 40.0% | |
| GATCAAACAAGAGCAATTGG+TGG | - | chr2.4:11041942-11041961 | MS.gene31520:intron | 40.0% | |
| GCAAAGGAAATATCAACTGC+AGG | - | chr2.4:11044242-11044261 | MS.gene31520:CDS | 40.0% | |
| GCCAATCTTCAAATTGAACC+AGG | + | chr2.4:11044224-11044243 | None:intergenic | 40.0% | |
| GCCTGGTTCAATTTGAAGAT+TGG | - | chr2.4:11044220-11044239 | MS.gene31520:CDS | 40.0% | |
| GCTAATGAAGCTAAACATCG+TGG | - | chr2.4:11043787-11043806 | MS.gene31520:CDS | 40.0% | |
| GGAGCTTCTGATTCTAACAT+TGG | - | chr2.4:11042218-11042237 | MS.gene31520:intron | 40.0% | |
| TGAGTGATGCAACATTGAGA+AGG | - | chr2.4:11042186-11042205 | MS.gene31520:intron | 40.0% | |
| TGTGTAACCAAACTTACTGC+AGG | + | chr2.4:11043506-11043525 | None:intergenic | 40.0% | |
| ! | AATCGATGACTTGCGTATGA+CGG | + | chr2.4:11041697-11041716 | None:intergenic | 40.0% |
| ! | GGTTAATTATGTTCGGTGGA+TGG | + | chr2.4:11043672-11043691 | None:intergenic | 40.0% |
| ! | TAATGGTTCAGGCATTGTTC+CGG | - | chr2.4:11042025-11042044 | MS.gene31520:intron | 40.0% |
| ! | TACATCCATTGCTATTCGTC+AGG | - | chr2.4:11043433-11043452 | MS.gene31520:CDS | 40.0% |
| ! | TTATGTTCGGTGGATGGTTA+TGG | + | chr2.4:11043666-11043685 | None:intergenic | 40.0% |
| ACATTGAGAAGGGCTAGAAG+AGG | - | chr2.4:11042197-11042216 | MS.gene31520:intron | 45.0% | |
| ACCTTAGCACCTTCCAAAAG+AGG | + | chr2.4:11043167-11043186 | None:intergenic | 45.0% | |
| CAACTGCAGGATTTACTGCT+AGG | - | chr2.4:11044255-11044274 | MS.gene31520:CDS | 45.0% | |
| CGTTGAAACCGATGATGAAG+AGG | - | chr2.4:11042258-11042277 | MS.gene31520:intron | 45.0% | |
| GCATCACTCATCAACCTTGT+AGG | + | chr2.4:11042176-11042195 | None:intergenic | 45.0% | |
| GGCCTTAATTCACCATCGAA+TGG | - | chr2.4:11042428-11042447 | MS.gene31520:CDS | 45.0% | |
| TCAACTCCTTTCGCCTTTGT+GGG | + | chr2.4:11042359-11042378 | None:intergenic | 45.0% | |
| TCATCCAAGGAAAACCTTCC+CGG | + | chr2.4:11042047-11042066 | None:intergenic | 45.0% | |
| TGAACCCTCGTCAACAAAGA+AGG | - | chr2.4:11041616-11041635 | MS.gene31520:CDS | 45.0% | |
| TTCAACTCCTTTCGCCTTTG+TGG | + | chr2.4:11042360-11042379 | None:intergenic | 45.0% | |
| ! | AATGGTTCAGGCATTGTTCC+GGG | - | chr2.4:11042026-11042045 | MS.gene31520:intron | 45.0% |
| ! | ACAAGAGCAATTGGTGGTTC+TGG | - | chr2.4:11041948-11041967 | MS.gene31520:intron | 45.0% |
| ! | CAATGAAGCTTTGGCTTCTC+CGG | - | chr2.4:11042127-11042146 | MS.gene31520:intron | 45.0% |
| ! | TGCAGAGTTCCTCTTTTGGA+AGG | - | chr2.4:11043155-11043174 | MS.gene31520:intron | 45.0% |
| ! | TGTGTGCAGAGTTCCTCTTT+TGG | - | chr2.4:11043151-11043170 | MS.gene31520:intron | 45.0% |
| ! | TTCAGTGGATTCTATGGAGG+TGG | + | chr2.4:11041658-11041677 | None:intergenic | 45.0% |
| !! | AGAGTTTTCAAGCCCCACAA+AGG | - | chr2.4:11042343-11042362 | MS.gene31520:intron | 45.0% |
| !!! | TCCTCTTTTGGAAGGTGCTA+AGG | - | chr2.4:11043163-11043182 | MS.gene31520:intron | 45.0% |
| AAACATTTCTCGCCACACCG+AGG | - | chr2.4:11042547-11042566 | MS.gene31520:intron | 50.0% | |
| AAGCAGTGTAAAGTGCAGCC+TGG | - | chr2.4:11044203-11044222 | MS.gene31520:CDS | 50.0% | |
| AATGGAAGCTGCGAGATCAG+AGG | + | chr2.4:11043459-11043478 | None:intergenic | 50.0% | |
| AGAGGCCTGACGAATAGCAA+TGG | + | chr2.4:11043441-11043460 | None:intergenic | 50.0% | |
| ATTGGAAGCTTGGGGAAGCA+TGG | - | chr2.4:11043076-11043095 | MS.gene31520:intron | 50.0% | |
| CAAACAAGTGTACCTCGGTG+TGG | + | chr2.4:11042562-11042581 | None:intergenic | 50.0% | |
| CAACTCCTTTCGCCTTTGTG+GGG | + | chr2.4:11042358-11042377 | None:intergenic | 50.0% | |
| CTGTTCTACGTCGTCAACTC+TGG | - | chr2.4:11041763-11041782 | MS.gene31520:intron | 50.0% | |
| CTTGAAAACTCTGACCTCCC+TGG | + | chr2.4:11042335-11042354 | None:intergenic | 50.0% | |
| CTTGTAGGAACTTCCACCAC+TGG | + | chr2.4:11042161-11042180 | None:intergenic | 50.0% | |
| CTTTGTTGACGAGGGTTCAC+CGG | + | chr2.4:11041615-11041634 | None:intergenic | 50.0% | |
| GGAAGGGGAAGGAAATTCAG+TGG | + | chr2.4:11041673-11041692 | None:intergenic | 50.0% | |
| GTGGATTCTATGGAGGTGGA+AGG | + | chr2.4:11041654-11041673 | None:intergenic | 50.0% | |
| TGTGTCTCCTATCGTCTTCC+TGG | + | chr2.4:11041725-11041744 | None:intergenic | 50.0% | |
| TTCAGAGCCAGGAAGACGAT+AGG | - | chr2.4:11041715-11041734 | MS.gene31520:intron | 50.0% | |
| TTCTCCGGCAAGAAAACCAG+TGG | - | chr2.4:11042142-11042161 | MS.gene31520:intron | 50.0% | |
| ! | AAGCTTGGGGAAGCATGGAA+AGG | - | chr2.4:11043081-11043100 | MS.gene31520:intron | 50.0% |
| ! | ACTTGCGTATGACGGAGGAA+GGG | + | chr2.4:11041689-11041708 | None:intergenic | 50.0% |
| ! | CAGTGGTGGAAGTTCCTACA+AGG | - | chr2.4:11042159-11042178 | MS.gene31520:intron | 50.0% |
| ! | TGTTCCGGGAAGGTTTTCCT+TGG | - | chr2.4:11042040-11042059 | MS.gene31520:intron | 50.0% |
| !! | CAAGTCATCGATTCAGAGCC+AGG | - | chr2.4:11041704-11041723 | MS.gene31520:intron | 50.0% |
| !! | GGTGGTTCTGGAAGATTCAC+AGG | - | chr2.4:11041960-11041979 | MS.gene31520:intron | 50.0% |
| !!! | TCCACCACTGGTTTTCTTGC+CGG | + | chr2.4:11042149-11042168 | None:intergenic | 50.0% |
| TCAAGCCCCACAAAGGCGAA+AGG | - | chr2.4:11042350-11042369 | MS.gene31520:intron | 55.0% | |
| TCCGGCAAGAAAACCAGTGG+TGG | - | chr2.4:11042145-11042164 | MS.gene31520:intron | 55.0% | |
| TCTATGGAGGTGGAAGGCGA+GGG | + | chr2.4:11041648-11041667 | None:intergenic | 55.0% | |
| TTCTATGGAGGTGGAAGGCG+AGG | + | chr2.4:11041649-11041668 | None:intergenic | 55.0% | |
| ! | CACAGTGGGCTTTGTCACCA+GGG | - | chr2.4:11042315-11042334 | MS.gene31520:intron | 55.0% |
| ! | CGATGACTTGCGTATGACGG+AGG | + | chr2.4:11041694-11041713 | None:intergenic | 55.0% |
| ! | CTTGCGTATGACGGAGGAAG+GGG | + | chr2.4:11041688-11041707 | None:intergenic | 55.0% |
| ! | GAAGGCGCGAAACACTTCTC+CGG | - | chr2.4:11041593-11041612 | MS.gene31520:CDS | 55.0% |
| ! | GACTTGCGTATGACGGAGGA+AGG | + | chr2.4:11041690-11041709 | None:intergenic | 55.0% |
| ! | GTTCAGGCATTGTTCCGGGA+AGG | - | chr2.4:11042030-11042049 | MS.gene31520:intron | 55.0% |
| ! | TCACAGTGGGCTTTGTCACC+AGG | - | chr2.4:11042314-11042333 | MS.gene31520:intron | 55.0% |
| ! | AGTGGGCTTTGTCACCAGGG+AGG | - | chr2.4:11042318-11042337 | MS.gene31520:intron | 60.0% |
| ! | CGTATGACGGAGGAAGGGGA+AGG | + | chr2.4:11041684-11041703 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 11041591 | 11044290 | 11041591 | ID=MS.gene31520 |
| chr2.4 | mRNA | 11041591 | 11044290 | 11041591 | ID=MS.gene31520.t1;Parent=MS.gene31520 |
| chr2.4 | exon | 11043313 | 11044290 | 11043313 | ID=MS.gene31520.t1.exon1;Parent=MS.gene31520.t1 |
| chr2.4 | CDS | 11043313 | 11044290 | 11043313 | ID=cds.MS.gene31520.t1;Parent=MS.gene31520.t1 |
| chr2.4 | exon | 11042907 | 11043026 | 11042907 | ID=MS.gene31520.t1.exon2;Parent=MS.gene31520.t1 |
| chr2.4 | CDS | 11042907 | 11043026 | 11042907 | ID=cds.MS.gene31520.t1;Parent=MS.gene31520.t1 |
| chr2.4 | exon | 11042697 | 11042813 | 11042697 | ID=MS.gene31520.t1.exon3;Parent=MS.gene31520.t1 |
| chr2.4 | CDS | 11042697 | 11042813 | 11042697 | ID=cds.MS.gene31520.t1;Parent=MS.gene31520.t1 |
| chr2.4 | exon | 11042373 | 11042462 | 11042373 | ID=MS.gene31520.t1.exon4;Parent=MS.gene31520.t1 |
| chr2.4 | CDS | 11042373 | 11042462 | 11042373 | ID=cds.MS.gene31520.t1;Parent=MS.gene31520.t1 |
| chr2.4 | exon | 11041791 | 11041898 | 11041791 | ID=MS.gene31520.t1.exon5;Parent=MS.gene31520.t1 |
| chr2.4 | CDS | 11041791 | 11041898 | 11041791 | ID=cds.MS.gene31520.t1;Parent=MS.gene31520.t1 |
| chr2.4 | exon | 11041591 | 11041686 | 11041591 | ID=MS.gene31520.t1.exon6;Parent=MS.gene31520.t1 |
| chr2.4 | CDS | 11041591 | 11041686 | 11041591 | ID=cds.MS.gene31520.t1;Parent=MS.gene31520.t1 |
| Gene Sequence |
| Protein sequence |
