Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31562.t1 | XP_003597072.1 | 95.6 | 205 | 6 | 1 | 1 | 205 | 1 | 202 | 2.40E-104 | 388.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31562.t1 | Q8L4N1 | 66.7 | 171 | 49 | 2 | 25 | 191 | 45 | 211 | 3.2e-60 | 233.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31562.t1 | G7IRL4 | 95.6 | 205 | 6 | 1 | 1 | 205 | 1 | 202 | 1.8e-104 | 388.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene31562 | -0.811735 | 6.03E-51 | -1.69E-46 |
| MS.gene049284 | MS.gene31562 | -0.823249 | 1.53E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene31562 | -0.804198 | 2.42E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene31562 | -0.806726 | 7.15E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene31562 | 0.815687 | 8.14E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene31562 | -0.821516 | 3.87E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene31562 | -0.841304 | 5.15E-58 | -1.69E-46 |
| MS.gene052178 | MS.gene31562 | -0.819552 | 1.09E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene31562 | 0.860336 | 2.22E-63 | -1.69E-46 |
| MS.gene052340 | MS.gene31562 | -0.804993 | 1.65E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene31562 | -0.816842 | 4.49E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene31562 | -0.823754 | 1.17E-53 | -1.69E-46 |
| MS.gene053907 | MS.gene31562 | -0.811127 | 8.18E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene31562 | -0.813976 | 1.95E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene31562 | -0.816904 | 4.35E-52 | -1.69E-46 |
| MS.gene056979 | MS.gene31562 | -0.843922 | 1.04E-58 | -1.69E-46 |
| MS.gene05811 | MS.gene31562 | -0.804385 | 2.22E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene31562 | -0.815364 | 9.60E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene31562 | -0.807898 | 4.04E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene31562 | -0.831469 | 1.64E-55 | -1.69E-46 |
| MS.gene059894 | MS.gene31562 | -0.880048 | 7.56E-70 | -1.69E-46 |
| MS.gene059899 | MS.gene31562 | -0.8293 | 5.56E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene31562 | -0.815634 | 8.36E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31562.t1 | MTR_2g089350 | 95.610 | 205 | 6 | 1 | 1 | 205 | 1 | 202 | 1.53e-142 | 400 |
| MS.gene31562.t1 | MTR_1717s0010 | 63.265 | 196 | 58 | 3 | 21 | 202 | 38 | 233 | 5.19e-74 | 227 |
| MS.gene31562.t1 | MTR_1527s0010 | 63.265 | 196 | 58 | 3 | 21 | 202 | 38 | 233 | 5.19e-74 | 227 |
| MS.gene31562.t1 | MTR_2g081250 | 41.333 | 150 | 64 | 4 | 4 | 153 | 3 | 128 | 2.50e-31 | 114 |
| MS.gene31562.t1 | MTR_1g087200 | 31.977 | 172 | 90 | 7 | 24 | 186 | 5 | 158 | 3.16e-20 | 85.5 |
| MS.gene31562.t1 | MTR_1g083950 | 30.000 | 170 | 102 | 5 | 25 | 192 | 9 | 163 | 1.66e-19 | 84.0 |
| MS.gene31562.t1 | MTR_5g065980 | 35.028 | 177 | 92 | 8 | 21 | 184 | 4 | 170 | 8.04e-19 | 82.4 |
| MS.gene31562.t1 | MTR_5g065980 | 35.028 | 177 | 90 | 8 | 21 | 184 | 4 | 168 | 2.14e-18 | 81.3 |
| MS.gene31562.t1 | MTR_1g054765 | 30.387 | 181 | 96 | 6 | 26 | 188 | 4 | 172 | 6.70e-17 | 77.0 |
| MS.gene31562.t1 | MTR_1g088640 | 29.012 | 162 | 96 | 3 | 29 | 187 | 16 | 161 | 9.38e-17 | 76.3 |
| MS.gene31562.t1 | MTR_1g054750 | 30.857 | 175 | 97 | 5 | 26 | 188 | 23 | 185 | 4.09e-16 | 75.1 |
| MS.gene31562.t1 | MTR_2g034200 | 29.878 | 164 | 104 | 3 | 23 | 184 | 3 | 157 | 5.02e-16 | 74.3 |
| MS.gene31562.t1 | MTR_1g088640 | 29.630 | 162 | 98 | 3 | 29 | 187 | 16 | 164 | 2.58e-15 | 72.4 |
| MS.gene31562.t1 | MTR_4g064933 | 30.120 | 166 | 103 | 4 | 22 | 184 | 2 | 157 | 8.84e-15 | 70.9 |
| MS.gene31562.t1 | MTR_7g065770 | 27.160 | 162 | 107 | 3 | 25 | 184 | 5 | 157 | 1.82e-13 | 67.4 |
| MS.gene31562.t1 | MTR_4g019800 | 26.627 | 169 | 99 | 5 | 25 | 184 | 5 | 157 | 6.03e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31562.t1 | AT1G11360 | 66.146 | 192 | 53 | 3 | 1 | 191 | 20 | 200 | 5.96e-86 | 257 |
| MS.gene31562.t1 | AT1G11360 | 66.146 | 192 | 53 | 3 | 1 | 191 | 20 | 200 | 5.96e-86 | 257 |
| MS.gene31562.t1 | AT1G11360 | 66.146 | 192 | 53 | 3 | 1 | 191 | 20 | 200 | 5.96e-86 | 257 |
| MS.gene31562.t1 | AT1G11360 | 66.146 | 192 | 53 | 3 | 1 | 191 | 20 | 200 | 5.96e-86 | 257 |
| MS.gene31562.t1 | AT5G54430 | 67.836 | 171 | 49 | 3 | 22 | 191 | 45 | 210 | 1.67e-66 | 208 |
| MS.gene31562.t1 | AT5G54430 | 67.836 | 171 | 49 | 3 | 22 | 191 | 45 | 210 | 1.67e-66 | 208 |
| MS.gene31562.t1 | AT5G54430 | 67.836 | 171 | 49 | 3 | 22 | 191 | 45 | 210 | 1.80e-66 | 207 |
| MS.gene31562.t1 | AT5G54430 | 67.836 | 171 | 49 | 3 | 22 | 191 | 45 | 210 | 1.80e-66 | 207 |
| MS.gene31562.t1 | AT5G54430 | 67.836 | 171 | 49 | 3 | 22 | 191 | 45 | 210 | 2.12e-66 | 208 |
| MS.gene31562.t1 | AT5G54430 | 67.836 | 171 | 49 | 3 | 22 | 191 | 45 | 210 | 2.12e-66 | 208 |
| MS.gene31562.t1 | AT4G27320 | 64.912 | 171 | 60 | 0 | 21 | 191 | 41 | 211 | 5.22e-65 | 204 |
| MS.gene31562.t1 | AT4G27320 | 64.912 | 171 | 60 | 0 | 21 | 191 | 41 | 211 | 6.27e-65 | 204 |
| MS.gene31562.t1 | AT3G21210 | 48.205 | 195 | 58 | 7 | 7 | 198 | 2 | 156 | 3.95e-34 | 131 |
| MS.gene31562.t1 | AT3G58450 | 34.286 | 175 | 90 | 6 | 27 | 189 | 32 | 193 | 1.96e-19 | 84.7 |
| MS.gene31562.t1 | AT3G58450 | 33.143 | 175 | 85 | 6 | 27 | 189 | 32 | 186 | 4.23e-18 | 80.9 |
| MS.gene31562.t1 | AT1G09740 | 34.270 | 178 | 100 | 6 | 21 | 191 | 4 | 171 | 4.79e-18 | 80.1 |
| MS.gene31562.t1 | AT1G09740 | 34.270 | 178 | 100 | 6 | 21 | 191 | 4 | 171 | 4.79e-18 | 80.1 |
| MS.gene31562.t1 | AT3G11930 | 27.919 | 197 | 116 | 7 | 5 | 188 | 13 | 196 | 8.53e-18 | 80.1 |
| MS.gene31562.t1 | AT3G03270 | 33.728 | 169 | 93 | 4 | 22 | 184 | 2 | 157 | 1.09e-17 | 79.0 |
| MS.gene31562.t1 | AT3G11930 | 27.179 | 195 | 122 | 5 | 5 | 188 | 13 | 198 | 2.45e-17 | 79.0 |
| MS.gene31562.t1 | AT3G11930 | 28.788 | 198 | 114 | 8 | 5 | 188 | 13 | 197 | 3.26e-17 | 78.6 |
| MS.gene31562.t1 | AT3G17020 | 28.834 | 163 | 104 | 3 | 25 | 184 | 7 | 160 | 1.18e-16 | 76.3 |
| MS.gene31562.t1 | AT3G53990 | 29.697 | 165 | 99 | 5 | 25 | 184 | 5 | 157 | 2.31e-14 | 69.7 |
| MS.gene31562.t1 | AT3G62550 | 31.737 | 167 | 92 | 6 | 24 | 184 | 6 | 156 | 2.77e-14 | 69.7 |
| MS.gene31562.t1 | AT3G11930 | 25.792 | 221 | 117 | 8 | 5 | 188 | 13 | 223 | 7.26e-14 | 69.7 |
| MS.gene31562.t1 | AT2G47710 | 26.347 | 167 | 100 | 5 | 27 | 187 | 10 | 159 | 5.90e-12 | 63.2 |
| MS.gene31562.t1 | AT3G03270 | 30.818 | 159 | 93 | 4 | 22 | 173 | 2 | 150 | 1.67e-11 | 62.8 |
| MS.gene31562.t1 | AT1G68300 | 29.518 | 166 | 93 | 7 | 25 | 184 | 10 | 157 | 5.11e-11 | 60.5 |
Find 96 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGATGATGCATCATTTA+AGG | 0.170680 | 2.4:+11590353 | MS.gene31562:CDS |
| AACCTCACTTTGAGTCTTAT+TGG | 0.171123 | 2.4:-11590232 | None:intergenic |
| TGGATTGAGTGCTGTGATTA+TGG | 0.202284 | 2.4:+11589229 | MS.gene31562:CDS |
| ACCGTCGGCGGTGGCGGCGG+TGG | 0.208659 | 2.4:-11589033 | None:intergenic |
| CGTCGGCGGTGGCGGCGGTG+GGG | 0.235216 | 2.4:-11589031 | None:intergenic |
| ACCTCACTTTGAGTCTTATT+GGG | 0.252222 | 2.4:-11590231 | None:intergenic |
| GTCGGCGGTGGCGGCGGTGG+GGG | 0.286804 | 2.4:-11589030 | None:intergenic |
| CCGTCGGCGGTGGCGGCGGT+GGG | 0.293253 | 2.4:-11589032 | None:intergenic |
| CGTTCTCTACGGCGCCGATT+GGG | 0.323896 | 2.4:+11588995 | MS.gene31562:CDS |
| TTGAGTCTTATTGGGGATCT+TGG | 0.324929 | 2.4:-11590223 | None:intergenic |
| CCGTTCTCTACGGCGCCGAT+TGG | 0.330764 | 2.4:+11588994 | MS.gene31562:CDS |
| AGAATCATCCAAAGCTCTAT+TGG | 0.365393 | 2.4:-11590166 | None:intergenic |
| TCGAGCCGGGTGATCCGGTT+CGG | 0.366540 | 2.4:-11588829 | None:intergenic |
| TTTGTCCTGTTGTTGTTGTA+AGG | 0.379033 | 2.4:+11589333 | MS.gene31562:CDS |
| ATCGCCACCGTCGGCGGTGG+CGG | 0.381717 | 2.4:-11589039 | None:intergenic |
| GGATTGAGTGCTGTGATTAT+GGG | 0.392819 | 2.4:+11589230 | MS.gene31562:CDS |
| GCCACCGTCGGCGGTGGCGG+CGG | 0.401210 | 2.4:-11589036 | None:intergenic |
| TATGAAGGAAAGATTGTGTT+TGG | 0.411316 | 2.4:+11589193 | MS.gene31562:CDS |
| TTCACAATGTGAATCTTAAA+CGG | 0.413061 | 2.4:-11589161 | None:intergenic |
| GGCGGTGGCGCCGGAGTTGA+AGG | 0.418319 | 2.4:+11589374 | MS.gene31562:CDS |
| GAGAATCGAGCCGGGTGATC+CGG | 0.418386 | 2.4:-11588834 | None:intergenic |
| CGAGCCGGGTGATCCGGTTC+GGG | 0.434205 | 2.4:-11588828 | None:intergenic |
| GGCACTCCCGTGCCACTAGC+AGG | 0.436548 | 2.4:-11590312 | None:intergenic |
| ACCATCATTCCCTTCAACTC+CGG | 0.437183 | 2.4:-11589384 | None:intergenic |
| CCCGTGCCACTAGCAGGCAT+TGG | 0.438693 | 2.4:-11590306 | None:intergenic |
| CCCACCGCCGCCACCGCCGA+CGG | 0.446499 | 2.4:+11589032 | MS.gene31562:CDS |
| GGAGGGGACGGAACCCCAAT+CGG | 0.448915 | 2.4:-11589009 | None:intergenic |
| TGCGACTTTGCGGTGTGAAC+CGG | 0.449024 | 2.4:-11588865 | None:intergenic |
| ACCGCCGCCACCGCCGACGG+TGG | 0.455733 | 2.4:+11589035 | MS.gene31562:CDS |
| GCGACGAAGAGAAGTTCTAA+TGG | 0.460127 | 2.4:+11589269 | MS.gene31562:CDS |
| CCGTGCCACTAGCAGGCATT+GGG | 0.461976 | 2.4:-11590305 | None:intergenic |
| TGTTGTTGTTGTAAGGTATC+CGG | 0.464214 | 2.4:+11589340 | MS.gene31562:CDS |
| CACCAATGGTTGTGCAAGAT+CGG | 0.464706 | 2.4:-11589126 | None:intergenic |
| GAGAGTGATGGCGGTGGCGC+CGG | 0.471955 | 2.4:+11589365 | MS.gene31562:CDS |
| GGATACCTTACAACAACAAC+AGG | 0.473220 | 2.4:-11589338 | None:intergenic |
| AGAAGTTCTAATGGGAAGCT+TGG | 0.473262 | 2.4:+11589278 | MS.gene31562:CDS |
| ATCACCGGTTCGGCCCGAAC+CGG | 0.473685 | 2.4:+11588815 | MS.gene31562:CDS |
| ATAAGACTCAAAGTGAGGTT+AGG | 0.474616 | 2.4:+11590235 | MS.gene31562:CDS |
| TGATCCGGTTCGGGCCGAAC+CGG | 0.474957 | 2.4:-11588819 | None:intergenic |
| TTTCGCATCCAATAGAGCTT+TGG | 0.479692 | 2.4:+11590158 | MS.gene31562:CDS |
| GGCATCGCCACCGTCGGCGG+TGG | 0.483223 | 2.4:-11589042 | None:intergenic |
| CAACGGCGATTGCGACTTTG+CGG | 0.486543 | 2.4:-11588875 | None:intergenic |
| ATTATGGGAAGCCGTGGATT+CGG | 0.487024 | 2.4:+11589245 | MS.gene31562:CDS |
| TGTGAAAGATCATGATATGA+AGG | 0.493312 | 2.4:+11589178 | MS.gene31562:CDS |
| TGTGTCGAAGTGGGAGGAAG+AGG | 0.494490 | 2.4:+11590122 | MS.gene31562:intron |
| AGGAGGATGACGGTGTCGCC+TGG | 0.496895 | 2.4:-11588954 | None:intergenic |
| CGACGAAGAGAAGTTCTAAT+GGG | 0.501552 | 2.4:+11589270 | MS.gene31562:CDS |
| CGATCTTGCACAACCATTGG+TGG | 0.502670 | 2.4:+11589127 | MS.gene31562:CDS |
| CCCAATGCCTGCTAGTGGCA+CGG | 0.505492 | 2.4:+11590305 | MS.gene31562:CDS |
| AAAGCGCCTACGCCGTCCGA+TGG | 0.507961 | 2.4:+11588910 | MS.gene31562:CDS |
| CCAATGCCTGCTAGTGGCAC+GGG | 0.512889 | 2.4:+11590306 | MS.gene31562:CDS |
| TCGGGCCGAACCGGTGATTG+TGG | 0.519250 | 2.4:-11588810 | None:intergenic |
| GCTCGATTCTCTCTCCCATC+CGG | 0.521090 | 2.4:+11588846 | MS.gene31562:CDS |
| AACCGATCTTGCACAACCAT+TGG | 0.523574 | 2.4:+11589124 | MS.gene31562:CDS |
| TGAATCCACAATCACCGGTT+CGG | 0.526182 | 2.4:+11588805 | MS.gene31562:CDS |
| GGAGTTTCTGATTCCACCAA+TGG | 0.528495 | 2.4:-11589140 | None:intergenic |
| GCGCCGTAGAGAACGGAAGT+TGG | 0.529716 | 2.4:-11588987 | None:intergenic |
| AAGTTGGACGGACGTGGAGG+AGG | 0.532912 | 2.4:-11588971 | None:intergenic |
| AAGTTGGTCATGACTGCTGC+TGG | 0.534126 | 2.4:-11590333 | None:intergenic |
| CCTCACTTTGAGTCTTATTG+GGG | 0.541523 | 2.4:-11590230 | None:intergenic |
| GATTGTGTTTGGAAGTTGAA+CGG | 0.542960 | 2.4:+11589204 | MS.gene31562:CDS |
| CTCGGAGGCATCGCCACCGT+CGG | 0.543219 | 2.4:-11589048 | None:intergenic |
| TCGGCCCGAACCGGATCACC+CGG | 0.544498 | 2.4:+11588824 | MS.gene31562:CDS |
| GTTCTCTACGGCGCCGATTG+GGG | 0.546679 | 2.4:+11588996 | MS.gene31562:CDS |
| AGCAGCAGTCATGACCAACT+TGG | 0.552750 | 2.4:+11590335 | MS.gene31562:CDS |
| CCACCGCCATCACTCTCCTC+CGG | 0.553044 | 2.4:-11589359 | None:intergenic |
| CGTCCAACTTCCGTTCTCTA+CGG | 0.556201 | 2.4:+11588984 | MS.gene31562:CDS |
| GAACGGAAGTTGGACGGACG+TGG | 0.556761 | 2.4:-11588977 | None:intergenic |
| AAGCGCCTACGCCGTCCGAT+GGG | 0.559124 | 2.4:+11588911 | MS.gene31562:CDS |
| CCAATCGGCGCCGTAGAGAA+CGG | 0.564627 | 2.4:-11588994 | None:intergenic |
| CAACATGAATCCACAATCAC+CGG | 0.570327 | 2.4:+11588800 | None:intergenic |
| AAATGATGCATCATCCAAGT+TGG | 0.570890 | 2.4:-11590349 | None:intergenic |
| GATGGGAGAGAGAATCGAGC+CGG | 0.579454 | 2.4:-11588843 | None:intergenic |
| ATGGGAGAGAGAATCGAGCC+GGG | 0.583700 | 2.4:-11588842 | None:intergenic |
| CTTTGCGGTGTGAACCGGAT+GGG | 0.583999 | 2.4:-11588860 | None:intergenic |
| TCTTCGTCGCACCGAATCCA+CGG | 0.588772 | 2.4:-11589256 | None:intergenic |
| AACTGCCCATCGGACGGCGT+AGG | 0.589727 | 2.4:-11588916 | None:intergenic |
| CGTAGAGAACGGAAGTTGGA+CGG | 0.593295 | 2.4:-11588983 | None:intergenic |
| GGAGGCATCGCCACCGTCGG+CGG | 0.602626 | 2.4:-11589045 | None:intergenic |
| TGTTTGGAAGTTGAACGGCT+TGG | 0.605669 | 2.4:+11589209 | MS.gene31562:CDS |
| GGATGACGGTGTCGCCTGGT+CGG | 0.607279 | 2.4:-11588950 | None:intergenic |
| CCGGAGGAGAGTGATGGCGG+TGG | 0.619622 | 2.4:+11589359 | MS.gene31562:CDS |
| ACTTTGCGGTGTGAACCGGA+TGG | 0.620134 | 2.4:-11588861 | None:intergenic |
| GCTTTCGTCGCTGAGATCAA+CGG | 0.620909 | 2.4:-11588892 | None:intergenic |
| AGGTATCCGGAGGAGAGTGA+TGG | 0.623434 | 2.4:+11589353 | MS.gene31562:CDS |
| GTTCAAAATTATCTCCGACC+AGG | 0.624222 | 2.4:+11588936 | MS.gene31562:CDS |
| GCCGGAGTTGAAGGGAATGA+TGG | 0.624545 | 2.4:+11589383 | MS.gene31562:CDS |
| CGACGGTGGCGATGCCTCCG+AGG | 0.636822 | 2.4:+11589049 | MS.gene31562:CDS |
| GCGGTGGCGCCGGAGTTGAA+GGG | 0.640757 | 2.4:+11589375 | MS.gene31562:CDS |
| ACAGACCCAATGCCTGCTAG+TGG | 0.643490 | 2.4:+11590300 | MS.gene31562:CDS |
| CCCCAATAAGACTCAAAGTG+AGG | 0.655344 | 2.4:+11590230 | MS.gene31562:CDS |
| TATCCGGAGGAGAGTGATGG+CGG | 0.657096 | 2.4:+11589356 | MS.gene31562:CDS |
| TGTTGTTGTAAGGTATCCGG+AGG | 0.667970 | 2.4:+11589343 | MS.gene31562:CDS |
| CGGAAGTTGGACGGACGTGG+AGG | 0.669422 | 2.4:-11588974 | None:intergenic |
| ACGGACGTGGAGGAGGATGA+CGG | 0.677052 | 2.4:-11588964 | None:intergenic |
| GCTGTGATTATGGGAAGCCG+TGG | 0.685112 | 2.4:+11589239 | MS.gene31562:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTATATTTCACATATTA+AGG | - | chr2.4:11590069-11590088 | None:intergenic | 15.0% |
| !!! | ACTTTTCATTGTTATTAATT+TGG | + | chr2.4:11589778-11589797 | MS.gene31562:intron | 15.0% |
| !!! | TTGTAGTTATTTTTAAAAGA+TGG | + | chr2.4:11589615-11589634 | MS.gene31562:intron | 15.0% |
| !! | ATTAGTATATTTCACATCTT+AGG | - | chr2.4:11590015-11590034 | None:intergenic | 20.0% |
| !!! | TTGGATTTTTGGAATTATAT+GGG | + | chr2.4:11589822-11589841 | MS.gene31562:intron | 20.0% |
| !!! | TTTGGATTTTTGGAATTATA+TGG | + | chr2.4:11589821-11589840 | MS.gene31562:intron | 20.0% |
| ! | AAAAAAAGACAAGATAGTTG+TGG | + | chr2.4:11590275-11590294 | MS.gene31562:CDS | 25.0% |
| ! | AATCCAAAAACAAAACACAA+AGG | - | chr2.4:11589870-11589889 | None:intergenic | 25.0% |
| ! | TTAAAAGATGGTTACAAAGT+AGG | + | chr2.4:11589627-11589646 | MS.gene31562:intron | 25.0% |
| ! | TTCACAATGTGAATCTTAAA+CGG | - | chr2.4:11589164-11589183 | None:intergenic | 25.0% |
| !! | AGTGAATATTTTCTATTCGA+TGG | + | chr2.4:11589574-11589593 | MS.gene31562:intron | 25.0% |
| !! | TATGATTGGATTTTGCATAT+TGG | + | chr2.4:11589987-11590006 | MS.gene31562:intron | 25.0% |
| !! | TCATTGTTATTAATTTGGCA+TGG | + | chr2.4:11589783-11589802 | MS.gene31562:intron | 25.0% |
| !!! | ATTGTCATGTTTTGGATTTT+TGG | + | chr2.4:11589811-11589830 | MS.gene31562:intron | 25.0% |
| !!! | ATTTTTGGAATTATATGGGT+TGG | + | chr2.4:11589826-11589845 | MS.gene31562:intron | 25.0% |
| !!! | TTTTTGGAATTATATGGGTT+GGG | + | chr2.4:11589827-11589846 | MS.gene31562:intron | 25.0% |
| ACATATTAAGGAGCAAACAA+AGG | - | chr2.4:11590057-11590076 | None:intergenic | 30.0% | |
| CATATTAAGGAGCAAACAAA+GGG | - | chr2.4:11590056-11590075 | None:intergenic | 30.0% | |
| GTTAAATGACTATGTACTGA+CGG | - | chr2.4:11589708-11589727 | None:intergenic | 30.0% | |
| TATGAAGGAAAGATTGTGTT+TGG | + | chr2.4:11589193-11589212 | MS.gene31562:CDS | 30.0% | |
| TGTGAAAGATCATGATATGA+AGG | + | chr2.4:11589178-11589197 | MS.gene31562:CDS | 30.0% | |
| ! | ATGATAGCGATCATATGTTT+AGG | + | chr2.4:11589933-11589952 | MS.gene31562:intron | 30.0% |
| !! | AGAAGATGATGGATTTCTAT+TGG | + | chr2.4:11589658-11589677 | MS.gene31562:intron | 30.0% |
| !! | ATCATATGTTTAGGTTGAAG+AGG | + | chr2.4:11589942-11589961 | MS.gene31562:intron | 30.0% |
| !!! | CTTCCTTTGTGTTTTGTTTT+TGG | + | chr2.4:11589864-11589883 | MS.gene31562:intron | 30.0% |
| AAATGATGCATCATCCAAGT+TGG | - | chr2.4:11590352-11590371 | None:intergenic | 35.0% | |
| AGAATCATCCAAAGCTCTAT+TGG | - | chr2.4:11590169-11590188 | None:intergenic | 35.0% | |
| ATAAGACTCAAAGTGAGGTT+AGG | + | chr2.4:11590235-11590254 | MS.gene31562:CDS | 35.0% | |
| CTTGGATGATGCATCATTTA+AGG | + | chr2.4:11590353-11590372 | MS.gene31562:CDS | 35.0% | |
| GATTGTGTTTGGAAGTTGAA+CGG | + | chr2.4:11589204-11589223 | MS.gene31562:CDS | 35.0% | |
| TATTGAGGAAGAACATGAAG+AGG | + | chr2.4:11589430-11589449 | MS.gene31562:intron | 35.0% | |
| TCATAATACCCTGAAAGTGA+TGG | - | chr2.4:11589972-11589991 | None:intergenic | 35.0% | |
| TCATGTTCTTCCTCAATAAC+AGG | - | chr2.4:11589428-11589447 | None:intergenic | 35.0% | |
| TGAACTTCATCCTGTTATTG+AGG | + | chr2.4:11589415-11589434 | MS.gene31562:intron | 35.0% | |
| ! | AACCTCACTTTGAGTCTTAT+TGG | - | chr2.4:11590235-11590254 | None:intergenic | 35.0% |
| ! | CACTTTCAGGGTATTATGAT+TGG | + | chr2.4:11589973-11589992 | MS.gene31562:intron | 35.0% |
| ! | GATAATTTTGAACTGCCCAT+CGG | - | chr2.4:11588929-11588948 | None:intergenic | 35.0% |
| ! | GTTATTAATTTGGCATGGAG+TGG | + | chr2.4:11589788-11589807 | MS.gene31562:intron | 35.0% |
| ! | TGTTGTTGTTGTAAGGTATC+CGG | + | chr2.4:11589340-11589359 | MS.gene31562:CDS | 35.0% |
| ! | TTTGTCCTGTTGTTGTTGTA+AGG | + | chr2.4:11589333-11589352 | MS.gene31562:CDS | 35.0% |
| !! | ACCTCACTTTGAGTCTTATT+GGG | - | chr2.4:11590234-11590253 | None:intergenic | 35.0% |
| !! | AGATGATGGATTTCTATTGG+AGG | + | chr2.4:11589661-11589680 | MS.gene31562:intron | 35.0% |
| !!! | CATTTTTTGACGTGATTCCT+CGG | - | chr2.4:11589069-11589088 | None:intergenic | 35.0% |
| ACTTCGACACATGTTGTTCA+AGG | - | chr2.4:11590113-11590132 | None:intergenic | 40.0% | |
| AGGCTTACATGAGAAGATGA+TGG | + | chr2.4:11589647-11589666 | MS.gene31562:intron | 40.0% | |
| CGAGGAATCACGTCAAAAAA+TGG | + | chr2.4:11589067-11589086 | MS.gene31562:CDS | 40.0% | |
| GGATACCTTACAACAACAAC+AGG | - | chr2.4:11589341-11589360 | None:intergenic | 40.0% | |
| GTTCAAAATTATCTCCGACC+AGG | + | chr2.4:11588936-11588955 | MS.gene31562:CDS | 40.0% | |
| TGAACAACATGTGTCGAAGT+GGG | + | chr2.4:11590113-11590132 | MS.gene31562:intron | 40.0% | |
| TTGAACAACATGTGTCGAAG+TGG | + | chr2.4:11590112-11590131 | MS.gene31562:intron | 40.0% | |
| TTTCGCATCCAATAGAGCTT+TGG | + | chr2.4:11590158-11590177 | MS.gene31562:CDS | 40.0% | |
| ! | AGAAGTTCTAATGGGAAGCT+TGG | + | chr2.4:11589278-11589297 | MS.gene31562:CDS | 40.0% |
| ! | CGACGAAGAGAAGTTCTAAT+GGG | + | chr2.4:11589270-11589289 | MS.gene31562:CDS | 40.0% |
| ! | GATGCTGATGATGAACACAA+AGG | + | chr2.4:11589461-11589480 | MS.gene31562:intron | 40.0% |
| ! | GATGGATTTCTATTGGAGGA+CGG | + | chr2.4:11589665-11589684 | MS.gene31562:intron | 40.0% |
| ! | GGATTGAGTGCTGTGATTAT+GGG | + | chr2.4:11589230-11589249 | MS.gene31562:CDS | 40.0% |
| ! | TGGATTGAGTGCTGTGATTA+TGG | + | chr2.4:11589229-11589248 | MS.gene31562:CDS | 40.0% |
| !! | CCTCACTTTGAGTCTTATTG+GGG | - | chr2.4:11590233-11590252 | None:intergenic | 40.0% |
| !! | GAATTATATGGGTTGGGAGA+GGG | + | chr2.4:11589833-11589852 | MS.gene31562:intron | 40.0% |
| !! | TTGAGTCTTATTGGGGATCT+TGG | - | chr2.4:11590226-11590245 | None:intergenic | 40.0% |
| !! | TTTGCAATTCGAGTTGAGCT+TGG | + | chr2.4:11589901-11589920 | MS.gene31562:intron | 40.0% |
| !!! | AAGATCGGTTGCTTTTGTTG+AGG | - | chr2.4:11589114-11589133 | None:intergenic | 40.0% |
| !!! | TGGAGTGGATTGTCATGTTT+TGG | + | chr2.4:11589803-11589822 | MS.gene31562:intron | 40.0% |
| AACCGATCTTGCACAACCAT+TGG | + | chr2.4:11589124-11589143 | MS.gene31562:CDS | 45.0% | |
| ACCATCATTCCCTTCAACTC+CGG | - | chr2.4:11589387-11589406 | None:intergenic | 45.0% | |
| AGAGGAATGCCATCACTTTC+AGG | + | chr2.4:11589960-11589979 | MS.gene31562:intron | 45.0% | |
| ATTATGGGAAGCCGTGGATT+CGG | + | chr2.4:11589245-11589264 | MS.gene31562:CDS | 45.0% | |
| CACCAATGGTTGTGCAAGAT+CGG | - | chr2.4:11589129-11589148 | None:intergenic | 45.0% | |
| CCCCAATAAGACTCAAAGTG+AGG | + | chr2.4:11590230-11590249 | MS.gene31562:CDS | 45.0% | |
| GAGGAATGCCATCACTTTCA+GGG | + | chr2.4:11589961-11589980 | MS.gene31562:intron | 45.0% | |
| GGAGTTTCTGATTCCACCAA+TGG | - | chr2.4:11589143-11589162 | None:intergenic | 45.0% | |
| TGTTTGGAAGTTGAACGGCT+TGG | + | chr2.4:11589209-11589228 | MS.gene31562:CDS | 45.0% | |
| ! | ATTTTGAACTGCCCATCGGA+CGG | - | chr2.4:11588925-11588944 | None:intergenic | 45.0% |
| ! | GCGACGAAGAGAAGTTCTAA+TGG | + | chr2.4:11589269-11589288 | MS.gene31562:CDS | 45.0% |
| ! | TGAATCCACAATCACCGGTT+CGG | + | chr2.4:11588805-11588824 | MS.gene31562:CDS | 45.0% |
| ! | TGTTGTTGTAAGGTATCCGG+AGG | + | chr2.4:11589343-11589362 | MS.gene31562:CDS | 45.0% |
| ! | TTTTTGACGTGATTCCTCGG+AGG | - | chr2.4:11589066-11589085 | None:intergenic | 45.0% |
| !! | GGAATTATATGGGTTGGGAG+AGG | + | chr2.4:11589832-11589851 | MS.gene31562:intron | 45.0% |
| ACAACATGTGTCGAAGTGGG+AGG | + | chr2.4:11590116-11590135 | MS.gene31562:intron | 50.0% | |
| AGCAGCAGTCATGACCAACT+TGG | + | chr2.4:11590335-11590354 | MS.gene31562:CDS | 50.0% | |
| CGATCTTGCACAACCATTGG+TGG | + | chr2.4:11589127-11589146 | MS.gene31562:CDS | 50.0% | |
| CGTAGAGAACGGAAGTTGGA+CGG | - | chr2.4:11588986-11589005 | None:intergenic | 50.0% | |
| CGTCCAACTTCCGTTCTCTA+CGG | + | chr2.4:11588984-11589003 | MS.gene31562:CDS | 50.0% | |
| GCTTTCGTCGCTGAGATCAA+CGG | - | chr2.4:11588895-11588914 | None:intergenic | 50.0% | |
| ! | AAGTTGGTCATGACTGCTGC+TGG | - | chr2.4:11590336-11590355 | None:intergenic | 50.0% |
| ACAGACCCAATGCCTGCTAG+TGG | + | chr2.4:11590300-11590319 | MS.gene31562:CDS | 55.0% | |
| ACTTTGCGGTGTGAACCGGA+TGG | - | chr2.4:11588864-11588883 | None:intergenic | 55.0% | |
| AGGTATCCGGAGGAGAGTGA+TGG | + | chr2.4:11589353-11589372 | MS.gene31562:CDS | 55.0% | |
| ATGGGAGAGAGAATCGAGCC+GGG | - | chr2.4:11588845-11588864 | None:intergenic | 55.0% | |
| CAACGGCGATTGCGACTTTG+CGG | - | chr2.4:11588878-11588897 | None:intergenic | 55.0% | |
| CTTTGCGGTGTGAACCGGAT+GGG | - | chr2.4:11588863-11588882 | None:intergenic | 55.0% | |
| GATGGGAGAGAGAATCGAGC+CGG | - | chr2.4:11588846-11588865 | None:intergenic | 55.0% | |
| GCCGGAGTTGAAGGGAATGA+TGG | + | chr2.4:11589383-11589402 | MS.gene31562:CDS | 55.0% | |
| GCTCGATTCTCTCTCCCATC+CGG | + | chr2.4:11588846-11588865 | MS.gene31562:CDS | 55.0% | |
| GCTGTGATTATGGGAAGCCG+TGG | + | chr2.4:11589239-11589258 | MS.gene31562:CDS | 55.0% | |
| TATCCGGAGGAGAGTGATGG+CGG | + | chr2.4:11589356-11589375 | MS.gene31562:CDS | 55.0% | |
| TCTTCGTCGCACCGAATCCA+CGG | - | chr2.4:11589259-11589278 | None:intergenic | 55.0% | |
| TGCGACTTTGCGGTGTGAAC+CGG | - | chr2.4:11588868-11588887 | None:intergenic | 55.0% | |
| TGTGTCGAAGTGGGAGGAAG+AGG | + | chr2.4:11590122-11590141 | MS.gene31562:intron | 55.0% | |
| AAGTTGGACGGACGTGGAGG+AGG | - | chr2.4:11588974-11588993 | None:intergenic | 60.0% | |
| ACGGACGTGGAGGAGGATGA+CGG | - | chr2.4:11588967-11588986 | None:intergenic | 60.0% | |
| CCAATCGGCGCCGTAGAGAA+CGG | - | chr2.4:11588997-11589016 | None:intergenic | 60.0% | |
| CCAATGCCTGCTAGTGGCAC+GGG | + | chr2.4:11590306-11590325 | MS.gene31562:CDS | 60.0% | |
| CCCAATGCCTGCTAGTGGCA+CGG | + | chr2.4:11590305-11590324 | MS.gene31562:CDS | 60.0% | |
| GAACGGAAGTTGGACGGACG+TGG | - | chr2.4:11588980-11588999 | None:intergenic | 60.0% | |
| GAGAATCGAGCCGGGTGATC+CGG | - | chr2.4:11588837-11588856 | None:intergenic | 60.0% | |
| GCGCCGTAGAGAACGGAAGT+TGG | - | chr2.4:11588990-11589009 | None:intergenic | 60.0% | |
| ! | CCGTGCCACTAGCAGGCATT+GGG | - | chr2.4:11590308-11590327 | None:intergenic | 60.0% |
| !! | CGTTCTCTACGGCGCCGATT+GGG | + | chr2.4:11588995-11589014 | MS.gene31562:CDS | 60.0% |
| !! | GTTCTCTACGGCGCCGATTG+GGG | + | chr2.4:11588996-11589015 | MS.gene31562:CDS | 60.0% |
| AACTGCCCATCGGACGGCGT+AGG | - | chr2.4:11588919-11588938 | None:intergenic | 65.0% | |
| AAGCGCCTACGCCGTCCGAT+GGG | + | chr2.4:11588911-11588930 | MS.gene31562:CDS | 65.0% | |
| CCACCGCCATCACTCTCCTC+CGG | - | chr2.4:11589362-11589381 | None:intergenic | 65.0% | |
| CGGAAGTTGGACGGACGTGG+AGG | - | chr2.4:11588977-11588996 | None:intergenic | 65.0% | |
| GGAGGGGACGGAACCCCAAT+CGG | - | chr2.4:11589012-11589031 | None:intergenic | 65.0% | |
| TCGAGCCGGGTGATCCGGTT+CGG | - | chr2.4:11588832-11588851 | None:intergenic | 65.0% | |
| TCGGGCCGAACCGGTGATTG+TGG | - | chr2.4:11588813-11588832 | None:intergenic | 65.0% | |
| ! | AAAGCGCCTACGCCGTCCGA+TGG | + | chr2.4:11588910-11588929 | MS.gene31562:CDS | 65.0% |
| ! | CCCGTGCCACTAGCAGGCAT+TGG | - | chr2.4:11590309-11590328 | None:intergenic | 65.0% |
| !! | AGGAGGATGACGGTGTCGCC+TGG | - | chr2.4:11588957-11588976 | None:intergenic | 65.0% |
| !! | ATCACCGGTTCGGCCCGAAC+CGG | + | chr2.4:11588815-11588834 | MS.gene31562:CDS | 65.0% |
| !! | CCGTTCTCTACGGCGCCGAT+TGG | + | chr2.4:11588994-11589013 | MS.gene31562:CDS | 65.0% |
| !! | GGATGACGGTGTCGCCTGGT+CGG | - | chr2.4:11588953-11588972 | None:intergenic | 65.0% |
| !! | TGATCCGGTTCGGGCCGAAC+CGG | - | chr2.4:11588822-11588841 | None:intergenic | 65.0% |
| CGAGCCGGGTGATCCGGTTC+GGG | - | chr2.4:11588831-11588850 | None:intergenic | 70.0% | |
| TCGGCCCGAACCGGATCACC+CGG | + | chr2.4:11588824-11588843 | MS.gene31562:CDS | 70.0% | |
| ! | GCGGTGGCGCCGGAGTTGAA+GGG | + | chr2.4:11589375-11589394 | MS.gene31562:CDS | 70.0% |
| ! | GGCACTCCCGTGCCACTAGC+AGG | - | chr2.4:11590315-11590334 | None:intergenic | 70.0% |
| !! | CCGGAGGAGAGTGATGGCGG+TGG | + | chr2.4:11589359-11589378 | MS.gene31562:CDS | 70.0% |
| !! | CTCGGAGGCATCGCCACCGT+CGG | - | chr2.4:11589051-11589070 | None:intergenic | 70.0% |
| !! | GAGAGTGATGGCGGTGGCGC+CGG | + | chr2.4:11589365-11589384 | MS.gene31562:CDS | 70.0% |
| ATCGCCACCGTCGGCGGTGG+CGG | - | chr2.4:11589042-11589061 | None:intergenic | 75.0% | |
| CGACGGTGGCGATGCCTCCG+AGG | + | chr2.4:11589049-11589068 | MS.gene31562:CDS | 75.0% | |
| ! | GGCGGTGGCGCCGGAGTTGA+AGG | + | chr2.4:11589374-11589393 | MS.gene31562:CDS | 75.0% |
| !! | GGAGGCATCGCCACCGTCGG+CGG | - | chr2.4:11589048-11589067 | None:intergenic | 75.0% |
| ! | GGCATCGCCACCGTCGGCGG+TGG | - | chr2.4:11589045-11589064 | None:intergenic | 80.0% |
| ! | ACCGCCGCCACCGCCGACGG+TGG | + | chr2.4:11589035-11589054 | MS.gene31562:CDS | 85.0% |
| ! | CCCACCGCCGCCACCGCCGA+CGG | + | chr2.4:11589032-11589051 | MS.gene31562:CDS | 85.0% |
| ! | GGCGGCGGTGGGGGAGGGGA+CGG | - | chr2.4:11589024-11589043 | None:intergenic | 85.0% |
| !! | ACCGTCGGCGGTGGCGGCGG+TGG | - | chr2.4:11589036-11589055 | None:intergenic | 85.0% |
| !! | CCGTCGGCGGTGGCGGCGGT+GGG | - | chr2.4:11589035-11589054 | None:intergenic | 85.0% |
| !! | CGGTGGCGGCGGTGGGGGAG+GGG | - | chr2.4:11589028-11589047 | None:intergenic | 85.0% |
| !! | CGTCGGCGGTGGCGGCGGTG+GGG | - | chr2.4:11589034-11589053 | None:intergenic | 85.0% |
| !! | GCCACCGTCGGCGGTGGCGG+CGG | - | chr2.4:11589039-11589058 | None:intergenic | 85.0% |
| !! | GCGGTGGCGGCGGTGGGGGA+GGG | - | chr2.4:11589029-11589048 | None:intergenic | 85.0% |
| !! | GTCGGCGGTGGCGGCGGTGG+GGG | - | chr2.4:11589033-11589052 | None:intergenic | 85.0% |
| !! | GGCGGTGGCGGCGGTGGGGG+AGG | - | chr2.4:11589030-11589049 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 11588804 | 11590392 | 11588804 | ID=MS.gene31562 |
| chr2.4 | mRNA | 11588804 | 11590392 | 11588804 | ID=MS.gene31562.t1;Parent=MS.gene31562 |
| chr2.4 | exon | 11588804 | 11589412 | 11588804 | ID=MS.gene31562.t1.exon1;Parent=MS.gene31562.t1 |
| chr2.4 | CDS | 11588804 | 11589412 | 11588804 | ID=cds.MS.gene31562.t1;Parent=MS.gene31562.t1 |
| chr2.4 | exon | 11590132 | 11590392 | 11590132 | ID=MS.gene31562.t1.exon2;Parent=MS.gene31562.t1 |
| chr2.4 | CDS | 11590132 | 11590392 | 11590132 | ID=cds.MS.gene31562.t1;Parent=MS.gene31562.t1 |
| Gene Sequence |
| Protein sequence |
