AlfalfaGEDB | MS.gene32694

M. sativa cultivar XinJiangDaYe / MS.gene32694

KEGG: -
GO: -
PFAM: PF20168.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32694.t1	XP_003603302.1	92.3	805	59	1	1	805	1	802	0.00E+00	1171.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32694.t1	Q04264	29.8	205	136	5	20	223	19	216	2.5e-14	82.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32694.t1	G7J9V3	92.3	805	59	1	1	805	1	802	0.0e+00	1171.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049824	MS.gene32694	0.825415	4.75E-54	-1.69E-46
MS.gene051247	MS.gene32694	0.804497	2.10E-49	-1.69E-46
MS.gene051700	MS.gene32694	0.823095	1.67E-53	-1.69E-46
MS.gene051720	MS.gene32694	0.816552	5.22E-52	-1.69E-46
MS.gene051744	MS.gene32694	0.815809	7.64E-52	-1.69E-46
MS.gene052516	MS.gene32694	0.811037	8.55E-51	-1.69E-46
MS.gene053079	MS.gene32694	0.800648	1.31E-48	-1.69E-46
MS.gene053122	MS.gene32694	0.806595	7.62E-50	-1.69E-46
MS.gene053144	MS.gene32694	0.80286	4.59E-49	-1.69E-46
MS.gene053226	MS.gene32694	0.844932	5.57E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32694.t1	MTR_3g106100	96.025	805	29	1	1	805	1	802	0.0	1550
MS.gene32694.t1	MTR_1g014270	64.062	320	92	1	1	297	1	320	2.41e-137	430
MS.gene32694.t1	MTR_1g014270	38.354	571	266	15	293	805	388	930	2.42e-63	229
MS.gene32694.t1	MTR_1g014300	64.253	221	79	0	6	226	18	238	4.94e-93	291
MS.gene32694.t1	MTR_4g006875	48.165	218	113	0	36	253	1	218	9.02e-67	236
MS.gene32694.t1	MTR_4g006875	31.915	141	71	3	455	593	630	747	2.68e-14	77.4
MS.gene32694.t1	MTR_4g006875	46.457	254	135	1	4	256	6	259	1.32e-65	234
MS.gene32694.t1	MTR_4g006875	31.915	141	71	3	455	593	668	785	3.07e-14	77.4
MS.gene32694.t1	MTR_4g134080	46.977	215	114	0	23	237	29	243	5.53e-54	203
MS.gene32694.t1	MTR_4g134080	33.945	109	51	3	496	587	1324	1428	8.75e-15	79.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32694.t1	AT4G31880	39.948	776	330	23	1	678	1	738	1.39e-137	429
MS.gene32694.t1	AT4G31880	40.129	775	329	23	1	678	1	737	1.59e-137	429
MS.gene32694.t1	AT1G80810	52.174	253	119	1	1	253	5	255	2.38e-81	274
MS.gene32694.t1	AT1G15940	51.894	264	125	1	9	272	13	274	7.25e-81	280
MS.gene32694.t1	AT1G80810	52.174	253	119	1	1	253	5	255	1.19e-80	276
MS.gene32694.t1	AT1G80810	52.709	203	96	0	51	253	1	203	3.60e-67	238
MS.gene32694.t1	AT1G80810	52.709	203	96	0	51	253	1	203	3.62e-67	238
MS.gene32694.t1	AT1G80810	52.709	203	96	0	51	253	1	203	3.62e-67	238
MS.gene32694.t1	AT5G47690	48.165	218	113	0	9	226	6	223	2.28e-50	192
MS.gene32694.t1	AT5G47690	42.697	89	47	2	502	587	1333	1420	7.50e-17	86.3

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Find 0 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACACAGATAGTTCCATT+TGG	-	24279:84111-84130	None:intergenic	30.0%
AAAACATTGATGTGGAATTG+TGG	+	24279:87205-87224	MS.gene32694:intron	30.0%
AAACACAGATAGTTCCATTT+GGG	-	24279:84110-84129	None:intergenic	30.0%
AAACATTGATGTGGAATTGT+GGG	+	24279:87206-87225	MS.gene32694:intron	30.0%
AAATTAAGAAACGGCAAGAA+AGG	-	24279:88334-88353	None:intergenic	30.0%
AATTGGACACATCAGAAAAA+AGG	-	24279:88504-88523	None:intergenic	30.0%
ACAAAAAAAATCTTCGGTTG+GGG	-	24279:87752-87771	None:intergenic	30.0%
ACTTAAAAGCCCAAAAAAAC+AGG	-	24279:87267-87286	None:intergenic	30.0%
AGTAAAACATACAGAAGTCT+TGG	+	24279:84200-84219	MS.gene32694:intron	30.0%
ATAATAACTAGTGTGATACG+CGG	-	24279:84010-84029	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
24279	gene	83614	89539	83614	ID=MS.gene32694
24279	mRNA	83614	89539	83614	ID=MS.gene32694.t1;Parent=MS.gene32694
24279	exon	83614	83715	83614	ID=MS.gene32694.t1.exon1;Parent=MS.gene32694.t1
24279	CDS	83614	83715	83614	ID=cds.MS.gene32694.t1;Parent=MS.gene32694.t1
24279	exon	84267	84470	84267	ID=MS.gene32694.t1.exon2;Parent=MS.gene32694.t1
24279	CDS	84267	84470	84267	ID=cds.MS.gene32694.t1;Parent=MS.gene32694.t1
24279	exon	84583	84764	84583	ID=MS.gene32694.t1.exon3;Parent=MS.gene32694.t1
24279	CDS	84583	84764	84583	ID=cds.MS.gene32694.t1;Parent=MS.gene32694.t1
24279	exon	85163	85289	85163	ID=MS.gene32694.t1.exon4;Parent=MS.gene32694.t1
24279	CDS	85163	85289	85163	ID=cds.MS.gene32694.t1;Parent=MS.gene32694.t1
24279	exon	85409	86254	85409	ID=MS.gene32694.t1.exon5;Parent=MS.gene32694.t1
24279	CDS	85409	86254	85409	ID=cds.MS.gene32694.t1;Parent=MS.gene32694.t1
24279	exon	86385	86492	86385	ID=MS.gene32694.t1.exon6;Parent=MS.gene32694.t1
24279	CDS	86385	86492	86385	ID=cds.MS.gene32694.t1;Parent=MS.gene32694.t1
24279	exon	86691	86764	86691	ID=MS.gene32694.t1.exon7;Parent=MS.gene32694.t1
24279	CDS	86691	86764	86691	ID=cds.MS.gene32694.t1;Parent=MS.gene32694.t1
24279	exon	87384	87435	87384	ID=MS.gene32694.t1.exon8;Parent=MS.gene32694.t1
24279	CDS	87384	87435	87384	ID=cds.MS.gene32694.t1;Parent=MS.gene32694.t1
24279	exon	87899	87985	87899	ID=MS.gene32694.t1.exon9;Parent=MS.gene32694.t1
24279	CDS	87899	87985	87899	ID=cds.MS.gene32694.t1;Parent=MS.gene32694.t1
24279	exon	88058	88101	88058	ID=MS.gene32694.t1.exon10;Parent=MS.gene32694.t1
24279	CDS	88058	88101	88058	ID=cds.MS.gene32694.t1;Parent=MS.gene32694.t1
24279	exon	88393	88464	88393	ID=MS.gene32694.t1.exon11;Parent=MS.gene32694.t1
24279	CDS	88393	88464	88393	ID=cds.MS.gene32694.t1;Parent=MS.gene32694.t1
24279	exon	89020	89539	89020	ID=MS.gene32694.t1.exon12;Parent=MS.gene32694.t1
24279	CDS	89020	89539	89020	ID=cds.MS.gene32694.t1;Parent=MS.gene32694.t1

Gene Sequence

>MS.gene32694

ATGGCGTTTGATCAAAAGGAACTGGAAGAGCAGCTTATTCAAGCTGGGAACAAGCTTGCAGATCCTCCTTCATCGGTGGATGAGCTTCTCTCATTGCTCAATGTAATCTCTATCTCTTTCATTTCACTAATTTTTCAACATTGTGATTTTCAGTTTTTTTTATTCTGGTTATGACATTTATATTTGATATACCAATCAGTGGAATTTTAAAAATGTGATTTTTTTTTTTTTTTTGTGTCTTGGATGTTTGGCATGTTGATTCCAAATTGTCACTTTCAAAACCCTAAATTTGCTTTGTTATAATGGGGTTAATTAATGTTACTGAATATATGCTTTGAGTGATCATAGAATTAAATTTGCATATCTATTCGCACTGGTATTAAAAGTGTTTATCCGCGTATCACACTAGTTATTATTAACATTAACATCCCGGTATATATCATAATCAACATCAATCTTTGGTGTTTGGCTTGTTTGTTGTGCATGCTTCAAGCCCAAATGGAACTATCTGTGTTTTCATTTTATGGTGTAAGCTCTGGGATGGTTGATTCATGACACAGTATAAAAGGTTGAATTTTTTAGGCAAAGTAAAACATACAGAAGTCTTGGTACATATTTTCAATCTGATCTAATCTTTTCCCTGGGCACTGCAGCGACTTGAGAGTTACTTAGCAAAGGTGGAACAGGCACCTAGAACGTCTATGCGAATTGCGCTTGCTCCATCTATGAAAGAATTGGTTGGGGATAAACTTTTAAGGCATCCGGATCCGGATGTGAAAGCTGCACTTGCCGCTTGCATCAGTGAAATCACAAGAATCTCTGCACCCGATACTCCTTATGATGATGATCAAATGAAGGTGTGTATAATTTTTTTTGATACAGTTTCAATGGCCTGTCTGTTGTCATGCACTTTACAACTGACATCAGTAAGTAATTCAGCTAAGTTTTGCTAATGAATTTTTCTTGCAGGAGATATTCCAATTAATTGTATCTTCATTTGAAAATCTACATGACAAGTTAAGCCGATCGTACGAGAATAGGAGAATAATCCTCGAAACTGTTGCAAAGGTCAGATCATGTGTGGTAATGTTGGACCTTGAATGTGATGCGCTGATTTTGGAGATGTTTCAGCATTTTTTGAAGACCATAAGGTGAGACCCTAGGAGCAATTTTTTGTTATTCAAGTCCAGCACTATCATGGGTTTGGATGCTATTATTTATGATTATTTCACCTCAAATTTGATCTGATCTATCATGATACCATATAGTTGCTACATTCACATTTTTCACCAAACATCTCAAGCTTTTGGGAAATTGGGAGAGTTGCTTAATCCTTAGAGCTTTTATGTTCTATTAAACAGTTTTCTTTTAACTCGGGGGATAAAGGGACATGTTAGAGATGTAATATAAAGCCGTTCACATGCTTTTACCTGGAAACTCAAGTTCTTAGGATAGTTTATGACATATGCATACAAAAGCTTTTCATTTGATATTTGGAGAAATTTATACGTGGGGGATGTGATTCTAACCAGCTCCATTTGAAAATCAGGGATCATCATCCAAAGGATGTTTTTTCATCCATGGAAACCATTATGACACTTGTTCTTGAGGAAAGTGAAGAGATATCCTTTGATTTGCTTTCTCCACTCCTGGAGAGCATTAAGAAAAACAACGAGGTTGGAGTTTGACAGTTTTGATTTTAATTCTTCCTAGTAGATTATGATTTTGAGTTTGAACCTTGTTTAAATCGTTAATATATTTATCATTGTCATTGTTATTAATCATCGTGGTCCAGGAAGTTTTCCCGATTGCCCGGAAATTGGGAGAGAGGGTCCTCGAAAGCTGTGGATCCAAACTAAAGCCCTGCTTGGTGCAAGCAGTGAGAACATTGGGTATATCTCTGGATGATTACAGTGAAGTACTTGGTTCAATTTGCCAAGAGGAAGCTAAGGAAGCTAAGGCCATTAAAGAGGCTGCACAATCGCCAAAAGATAATCGAAATGGGAATAGAAATTCCAAGTCAGTCACAAACGATGGGGTTGCACGCGTTGGAGAAGATGAGGAGTTCAATGATTTGGATGGAAGAAAAGTTGAACAAAAACCAGAAGAAGCCACCAAGAAGAGCAGGAGAAAACCGAGTCATTCAACGAAATCTGCTAAACCATCTGAAAAGATGATTGATTCTGAAAGTCACAGAAAAAAAGTTCTGAGTTCCTCACACGAGGACCAGGAAGTTGCGTATGCAGTTACAAGTCGAAGAGCATACAATGTTGAATCTCAAGTTATGACTTCTCCTTCACCTAGTGACAGCCTCCCTGACGAAAATCATTCAGAGAAACTTTGCAAAGCAGAAACAAAAGATAACCCCTCAAATGTCGAGGTTGCAGAGGCTGTTTCAAAAAAGGTATCTGAAGGAGCAAGTATATCAAAAGCCAAACCTGTCAAGCAGCCAGTGAGAAAGGTGCTTGGTCAGAACTCAGGCGTAAAAAATACTGCTGGTACAGATTCAGGCAAAAAACAAAGTGGGTCTGCTAGTGGTGCTGATGCTAAAAAGCACTCAGCCAGGAAATTGGATGATAACGAGGGTGGTGGTGGATCCTCTTCCAGGCAGCTGGTAGATAAGAAAAAGCGGGGGCAGGAGGTTCTTTTTCGTGCTTTTTTAACATCTTTTTTCTTATTATTTTTTACTATTATTTCAACACGATTTTGTTTTGCTTCATTCATTTTAAAAACAAATTATTTATGGAATCATTTTTTTTTTGTTAATATAGGAAATGGTTTCTTCTCCAAGGTCTGATATCAAATCATCTGAAGATGAAAAGTTAGAGGAGACTACCACGACAAATGGAAAGAGGAAACACGCCTCGGGAAGAAAAAATGTGTGTATCTTGTTTGACATTTACACTTAATTTCTAAAAATAATATGAAATCTTCATGATGTGATGTATTGATTAGGATTTAGGGTACATTTTCTTTTGGAGAATTCTTTCTGTAGATACGTCTGGTCTTCCTAGTTAGCAATCACAAAACTTTATTTTTCTTGTCATTTTGATCGCTAATTGTCTTGCTGCTATCAGGAGTCTGATATCATGGAACATGATCAAAACCTTGTCGGTGTAAGACTTGAAGTATGGTGGCCGAAGGATCGTCAGTAAGTACTCTGCATTACCATTTCTGAATTTTTGACATGCTGTCTTAAGAGATTTTGGCTAACAAGGGTGCAGGGAGTGTTATATACTGTGTGGCATTTACATGTAAAATTGTAAATATCTAGTTTTTGCATACATGGTTGCACAAGATGTTTGATATGACGTTGCATTGTGTGCCTAATGTTTTGTGTGATTTCATCACTTTTTTATTACGTTGATAACAATTATATGTAATCATTGTGTAGACCTTTTTGGCGATGTTATCATGGTCTTCATGGTTTGACTTCTAGAGTTTGCTTCCTGACCTATATTGTAAACTGCAATAGTTGTCTTATGTAAGCAATTATGATATGTTAAACAACGACATATTGTCTATTGTGGTTACACACCAAATTACTGTTTCTGAACTGCAATAGTTGTCTTCTGTAAACTTTACTGTGAGAAAACATTGATGTGGAATTGTGGGAAAGGATATTTAAACTAAAAGAAGGAATGTCATATCCTGTTTTTTTGGGCTTTTAAGTTTGCTCATGCATCTTCTATTCTTGCTCTTAGTCTGCCTTTTCATTTTGTAGAATATAAATATATTATCTCTTTTGACAAATATATGATTGTTTGCAGGTTTTACAAAGGTGTCATTGAATCTTTTGATTTTCGCAAAAAGAAACACAAGGTGACTTGGCTGTTTATTAAGTCATTCCTGCACCCTCCCCTTCTATTCTTTATGGTCTATTGTATGGATTCTGATTATTTCTTCTCCTTTGGATAGTAATTGTCCCACTCTGACTATTTCTTCCAATGAATTTCTTATTTAAAAGCGTGAATGTGTGTGTCTACTTTAGGGTGTACATTTAAGATATAACTTTAAATGGTATAAAAATATAACATGCTGGATTTGAAATCCTGGGCTCTATTGTTGTTCCCCCTCTCAAGCAAGCAGTGGTTTTAAACTATAATCAGAAAAGTTTTTCCCAAAAAAGAATAAACCCCAACCGAAGATTTTTTTTGTGCTTTCTTATTAAGCTAGAAACTAGAAAGGTTGGCATAATGAAAAAAATGCTGTATCATAACAGCATTTTTTAAAAGCTTATACAAACGCACTTGTTATCTTCTGATGCTTGTTTTTTCTATTTTAGGTGGTTTATGACGATGGTGAAGTTGAAGTATTAAATCTTGCCAGGGAAAAGTGGAACATCATTGAAGCTGATTCAGATGCAGATGAGGTTGGTCTATACCTTACATTACACCATAATCTTTCCCGTGTCTAAATTAATGACAATTATTTCTGTGGACAGGAAGAAGAAAGTGATCGTGGCAGTCTTGATGCTTCCACTGAAATGTATGTGTTGCATAGCATTAGTGTCTTTTGTTGTTGAAATTTTAGCGTTTTTTTATTAGATACATCATTTTACTACATCGTCAGAAAACTATCCTAAATTATTTTGTTTGCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCACGTTCCTCCTTTATTATATGGAGCTTAATTGAATGTGTCTTGTGGCCAATATGATCTGCCTTTCTTGCCGTTTCTTAATTTGGTCTTGTTTATGGTGTATTGTTTTTTGATCCTATTCAGGCCTGCAAGGAAGAAAACAAAACCAAGTTCCGATGAACCAACTAAGCAAGGAATGCCAGGTCTTTCTTCCAGGTTTGTCAATATCAATATATCAACTTTTCTGAACCACCTTTTTTCTGATGTGTCCAATTTTCTACTTGGATTTGTCGTGGGGGAGCAATTGGGTTAATAAATCAAAGGGAACAACACAATTTTGCTTTTTTACTTTTACATGTTTATTAAAGTTTTAAGTTATATAATATGAATTCAATGACAATGCATTGATGGAGTAAATACGTTTTTACACATTCCTGTTAAAAAATTGTTTTTACATATAATTTCAATCATATTTCATTATATTCCAACATCATACTGTATTATATTAGGAGGTTGTTTGTGCAGTTTTAGAGGATAGTACAATACGATTGTACATCTTAAGCTGTCAGTGTTTAGTTATTAAACTCATTATATTTTCTCAAAGCATTCTCATTGTGTTAAATAGAAAAAGTATTAAATAAAATAAATGAATTTATTATCTTGCAAGTATAAAATTGCAAGTATAAAAATGATTTAATACTTTCTTTATTTAATGTCATTTTTTTGTTGACACCGTTATTTACTATCATATTTTCCTTCTTCGATTTGTAGTGGTGGAGCATCAGGATCAAGTAAATCAAAGGGTGTACTGAAGTTTGGTCAGAAGTCTACGGGTGGATACAAATCGAACGAATCCAAGACTGTTAGTGATTCTGAGGATGAAGTTAGCAGAAAGTTTAAGGACAGCACTCCTAAAAGTGGTAGCAGTAAATCTGCTACACAGACAATGACTGGTAAATCCAAGAACATTGGTGGTTCCAAGACAAGCAAAAGAAAGGATGATGACACTATCGTGCCAAAACCTTCAGTCAAGTCTAAGCAGGAAACCCCAAAGAGTGGAATATCCAAACAAAAAACCCCAAAGACTGCTGCTTCTGAGGGAAAGCCCCCAAAAAGTGGTGAAAAGTCCACTGTCGACAGTGGTGGCAAGGGGAAATCTAATTCATTGAAGAAAAAAGACTTGGAGGATGATGACTTTGAATCAGATGTTTCTGCAAGCGAGGAGGTAGAAGATACAAAAGTCAAGACATCAGGTGATGCCATGAAGGGAAAGAAGCGTCAGAGAAGCTAG

Protein sequence

>MS.gene32694.t1

MAFDQKELEEQLIQAGNKLADPPSSVDELLSLLNRLESYLAKVEQAPRTSMRIALAPSMKELVGDKLLRHPDPDVKAALAACISEITRISAPDTPYDDDQMKEIFQLIVSSFENLHDKLSRSYENRRIILETVAKVRSCVVMLDLECDALILEMFQHFLKTIRDHHPKDVFSSMETIMTLVLEESEEISFDLLSPLLESIKKNNEEVFPIARKLGERVLESCGSKLKPCLVQAVRTLGISLDDYSEVLGSICQEEAKEAKAIKEAAQSPKDNRNGNRNSKSVTNDGVARVGEDEEFNDLDGRKVEQKPEEATKKSRRKPSHSTKSAKPSEKMIDSESHRKKVLSSSHEDQEVAYAVTSRRAYNVESQVMTSPSPSDSLPDENHSEKLCKAETKDNPSNVEVAEAVSKKVSEGASISKAKPVKQPVRKVLGQNSGVKNTAGTDSGKKQSGSASGADAKKHSARKLDDNEGGGGSSSRQLVDKKKRGQEEMVSSPRSDIKSSEDEKLEETTTTNGKRKHASGRKNESDIMEHDQNLVGVRLEVWWPKDRQFYKGVIESFDFRKKKHKVVYDDGEVEVLNLAREKWNIIEADSDADEEEESDRGSLDASTEMPARKKTKPSSDEPTKQGMPGLSSSGGASGSSKSKGVLKFGQKSTGGYKSNESKTVSDSEDEVSRKFKDSTPKSGSSKSATQTMTGKSKNIGGSKTSKRKDDDTIVPKPSVKSKQETPKSGISKQKTPKTAASEGKPPKSGEKSTVDSGGKGKSNSLKKKDLEDDDFESDVSASEEVEDTKVKTSGDAMKGKKRQRS