Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32869.t1 | PNY09726.1 | 84.9 | 914 | 128 | 3 | 35 | 942 | 32 | 941 | 0.00E+00 | 1536.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32869.t1 | O04472 | 63.5 | 509 | 176 | 3 | 43 | 542 | 21 | 528 | 1.6e-193 | 677.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32869.t1 | A0A2K3P354 | 84.9 | 914 | 128 | 3 | 35 | 942 | 32 | 941 | 0.0e+00 | 1536.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70604 | MS.gene32869 | PPI |
| MS.gene022275 | MS.gene32869 | PPI |
| MS.gene56947 | MS.gene32869 | PPI |
| MS.gene32869 | MS.gene91317 | PPI |
| MS.gene86930 | MS.gene32869 | PPI |
| MS.gene32869 | MS.gene96701 | PPI |
| MS.gene074377 | MS.gene32869 | PPI |
| MS.gene25932 | MS.gene32869 | PPI |
| MS.gene32869 | MS.gene43290 | PPI |
| MS.gene033221 | MS.gene32869 | PPI |
| MS.gene32869 | MS.gene71606 | PPI |
| MS.gene60344 | MS.gene32869 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32869.t1 | MTR_3g103230 | 96.875 | 544 | 16 | 1 | 1 | 544 | 1 | 543 | 0.0 | 1081 |
| MS.gene32869.t1 | MTR_5g022110 | 72.978 | 544 | 139 | 1 | 1 | 544 | 1 | 536 | 0.0 | 812 |
| MS.gene32869.t1 | MTR_3g103240 | 96.491 | 399 | 11 | 1 | 544 | 942 | 1 | 396 | 0.0 | 799 |
| MS.gene32869.t1 | MTR_8g063220 | 61.328 | 512 | 193 | 2 | 36 | 544 | 13 | 522 | 0.0 | 664 |
| MS.gene32869.t1 | MTR_3g078270 | 58.537 | 533 | 205 | 3 | 15 | 544 | 2 | 521 | 0.0 | 654 |
| MS.gene32869.t1 | MTR_4g106750 | 58.949 | 514 | 208 | 1 | 34 | 544 | 8 | 521 | 0.0 | 639 |
| MS.gene32869.t1 | MTR_5g035180 | 57.198 | 514 | 215 | 3 | 35 | 544 | 15 | 527 | 0.0 | 622 |
| MS.gene32869.t1 | MTR_1g106085 | 58.020 | 505 | 206 | 3 | 43 | 544 | 15 | 516 | 0.0 | 603 |
| MS.gene32869.t1 | MTR_4g106750 | 58.599 | 471 | 192 | 1 | 77 | 544 | 2 | 472 | 0.0 | 575 |
| MS.gene32869.t1 | MTR_2g016460 | 53.216 | 513 | 233 | 3 | 35 | 544 | 5 | 513 | 0.0 | 565 |
| MS.gene32869.t1 | MTR_8g086520 | 52.849 | 509 | 231 | 4 | 41 | 544 | 9 | 513 | 0.0 | 563 |
| MS.gene32869.t1 | MTR_3g080390 | 50.984 | 508 | 243 | 3 | 41 | 544 | 4 | 509 | 0.0 | 536 |
| MS.gene32869.t1 | MTR_8g086520 | 55.684 | 431 | 191 | 0 | 41 | 471 | 9 | 439 | 1.27e-174 | 516 |
| MS.gene32869.t1 | MTR_5g015270 | 63.636 | 396 | 122 | 6 | 552 | 942 | 1 | 379 | 1.80e-173 | 509 |
| MS.gene32869.t1 | MTR_5g015270 | 63.000 | 400 | 114 | 5 | 552 | 942 | 1 | 375 | 7.32e-173 | 507 |
| MS.gene32869.t1 | MTR_1g021120 | 50.491 | 509 | 242 | 4 | 40 | 543 | 32 | 535 | 3.54e-165 | 494 |
| MS.gene32869.t1 | MTR_8g086520 | 55.357 | 392 | 175 | 0 | 41 | 432 | 9 | 400 | 5.93e-157 | 468 |
| MS.gene32869.t1 | MTR_4g106750 | 58.537 | 369 | 147 | 2 | 182 | 544 | 1 | 369 | 9.30e-148 | 442 |
| MS.gene32869.t1 | MTR_8g086520 | 53.283 | 396 | 176 | 4 | 154 | 544 | 6 | 397 | 2.16e-143 | 432 |
| MS.gene32869.t1 | MTR_4g115580 | 41.562 | 397 | 182 | 6 | 546 | 942 | 16 | 362 | 1.15e-94 | 303 |
| MS.gene32869.t1 | MTR_8g068550 | 32.752 | 516 | 306 | 6 | 70 | 550 | 244 | 753 | 5.35e-88 | 298 |
| MS.gene32869.t1 | MTR_2g084895 | 34.205 | 497 | 284 | 6 | 69 | 528 | 164 | 654 | 8.27e-86 | 290 |
| MS.gene32869.t1 | MTR_5g032020 | 34.047 | 514 | 296 | 8 | 69 | 546 | 185 | 691 | 1.62e-84 | 287 |
| MS.gene32869.t1 | MTR_2g103510 | 29.779 | 544 | 333 | 10 | 20 | 541 | 60 | 576 | 3.62e-79 | 269 |
| MS.gene32869.t1 | MTR_4g055290 | 32.164 | 513 | 300 | 7 | 69 | 544 | 171 | 672 | 6.97e-79 | 271 |
| MS.gene32869.t1 | MTR_0066s0050 | 50.829 | 181 | 89 | 0 | 757 | 937 | 1 | 181 | 3.25e-55 | 189 |
| MS.gene32869.t1 | MTR_8g086535 | 63.636 | 99 | 36 | 0 | 334 | 432 | 18 | 116 | 8.70e-34 | 126 |
| MS.gene32869.t1 | MTR_0066s0040 | 60.000 | 60 | 24 | 0 | 578 | 637 | 7 | 66 | 8.57e-21 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32869.t1 | AT1G65550 | 62.620 | 519 | 183 | 4 | 35 | 544 | 14 | 530 | 0.0 | 702 |
| MS.gene32869.t1 | AT5G62890 | 59.533 | 514 | 205 | 1 | 34 | 544 | 8 | 521 | 0.0 | 648 |
| MS.gene32869.t1 | AT5G62890 | 59.533 | 514 | 205 | 1 | 34 | 544 | 8 | 521 | 0.0 | 648 |
| MS.gene32869.t1 | AT5G62890 | 59.533 | 514 | 205 | 1 | 34 | 544 | 8 | 521 | 0.0 | 648 |
| MS.gene32869.t1 | AT1G60030 | 59.406 | 505 | 202 | 1 | 43 | 544 | 23 | 527 | 0.0 | 639 |
| MS.gene32869.t1 | AT5G49990 | 59.055 | 508 | 205 | 1 | 40 | 544 | 10 | 517 | 0.0 | 611 |
| MS.gene32869.t1 | AT5G49990 | 59.055 | 508 | 205 | 1 | 40 | 544 | 10 | 517 | 0.0 | 611 |
| MS.gene32869.t1 | AT5G49990 | 59.055 | 508 | 205 | 1 | 40 | 544 | 10 | 517 | 0.0 | 611 |
| MS.gene32869.t1 | AT5G49990 | 59.055 | 508 | 205 | 1 | 40 | 544 | 10 | 517 | 0.0 | 611 |
| MS.gene32869.t1 | AT1G10540 | 54.953 | 535 | 225 | 5 | 18 | 544 | 2 | 528 | 0.0 | 604 |
| MS.gene32869.t1 | AT5G62890 | 61.369 | 453 | 172 | 1 | 34 | 483 | 8 | 460 | 0.0 | 589 |
| MS.gene32869.t1 | AT1G49960 | 56.944 | 504 | 214 | 1 | 44 | 544 | 12 | 515 | 0.0 | 583 |
| MS.gene32869.t1 | AT2G34190 | 52.663 | 507 | 235 | 2 | 41 | 544 | 9 | 513 | 0.0 | 561 |
| MS.gene32869.t1 | AT2G05760 | 49.606 | 508 | 250 | 3 | 41 | 544 | 4 | 509 | 4.37e-180 | 531 |
| MS.gene32869.t1 | AT4G37680 | 62.899 | 407 | 114 | 5 | 549 | 942 | 3 | 385 | 1.51e-178 | 522 |
| MS.gene32869.t1 | AT4G37680 | 62.899 | 407 | 114 | 5 | 549 | 942 | 3 | 385 | 1.51e-178 | 522 |
| MS.gene32869.t1 | AT4G37680 | 62.899 | 407 | 114 | 5 | 549 | 942 | 3 | 385 | 1.51e-178 | 522 |
| MS.gene32869.t1 | AT4G37680 | 62.899 | 407 | 114 | 5 | 549 | 942 | 8 | 390 | 2.00e-178 | 522 |
| MS.gene32869.t1 | AT4G37680 | 62.899 | 407 | 114 | 5 | 549 | 942 | 8 | 390 | 2.00e-178 | 522 |
| MS.gene32869.t1 | AT4G38320 | 64.021 | 378 | 100 | 4 | 566 | 931 | 21 | 374 | 8.28e-168 | 494 |
| MS.gene32869.t1 | AT5G25420 | 55.056 | 445 | 119 | 5 | 35 | 473 | 26 | 395 | 4.41e-163 | 484 |
| MS.gene32869.t1 | AT2G26510 | 48.062 | 516 | 260 | 3 | 34 | 544 | 26 | 538 | 1.26e-157 | 475 |
| MS.gene32869.t1 | AT1G10540 | 55.612 | 392 | 165 | 3 | 19 | 407 | 3 | 388 | 1.48e-150 | 451 |
| MS.gene32869.t1 | AT2G26510 | 48.663 | 374 | 192 | 0 | 34 | 407 | 26 | 399 | 4.01e-113 | 354 |
| MS.gene32869.t1 | AT2G26510 | 49.003 | 351 | 179 | 0 | 44 | 394 | 36 | 386 | 3.99e-106 | 336 |
| MS.gene32869.t1 | AT4G30850 | 38.992 | 377 | 189 | 8 | 568 | 937 | 8 | 350 | 5.17e-78 | 258 |
| MS.gene32869.t1 | AT4G30850 | 38.992 | 377 | 189 | 8 | 568 | 937 | 8 | 350 | 5.17e-78 | 258 |
| MS.gene32869.t1 | AT2G27810 | 30.565 | 566 | 342 | 10 | 1 | 528 | 125 | 677 | 2.93e-74 | 259 |
| MS.gene32869.t1 | AT2G24150 | 39.773 | 352 | 159 | 5 | 576 | 926 | 26 | 325 | 9.71e-74 | 246 |
| MS.gene32869.t1 | AT4G38050 | 31.835 | 534 | 315 | 8 | 52 | 546 | 175 | 698 | 1.54e-73 | 257 |
| MS.gene32869.t1 | AT2G27810 | 32.515 | 489 | 304 | 5 | 1 | 471 | 125 | 605 | 3.02e-73 | 256 |
| MS.gene32869.t1 | AT2G27810 | 32.135 | 473 | 295 | 5 | 1 | 455 | 125 | 589 | 3.21e-68 | 239 |
| MS.gene32869.t1 | AT5G20270 | 50.754 | 199 | 98 | 0 | 744 | 942 | 134 | 332 | 1.14e-63 | 218 |
| MS.gene32869.t1 | AT5G20270 | 42.353 | 85 | 48 | 1 | 563 | 647 | 36 | 119 | 3.00e-19 | 90.5 |
| MS.gene32869.t1 | AT2G27810 | 32.160 | 426 | 263 | 5 | 1 | 408 | 125 | 542 | 6.70e-59 | 211 |
| MS.gene32869.t1 | AT2G24150 | 47.644 | 191 | 100 | 0 | 744 | 934 | 54 | 244 | 6.43e-54 | 188 |
| MS.gene32869.t1 | AT2G40710 | 79.570 | 93 | 19 | 0 | 850 | 942 | 1 | 93 | 7.26e-48 | 165 |
| MS.gene32869.t1 | AT4G38290 | 70.000 | 90 | 25 | 1 | 853 | 942 | 21 | 108 | 2.15e-39 | 142 |
Find 222 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCTTGGTTGCTTTCATTT+TGG | 0.169248 | 3.1:+81728546 | MS.gene32869:CDS |
| ACATTTCTTCAATCTTTATT+TGG | 0.205778 | 3.1:+81726218 | MS.gene32869:CDS |
| CAGAGTACGTTGTTTGTTTC+CGG | 0.207698 | 3.1:+81726188 | MS.gene32869:CDS |
| TTATGGGATTCTTGGGATTA+TGG | 0.208045 | 3.1:+81726519 | MS.gene32869:CDS |
| ATTTATGAAGATTAGGTATA+TGG | 0.208878 | 3.1:-81730756 | None:intergenic |
| AGAGATTCACTCAGACAATT+AGG | 0.214814 | 3.1:+81726453 | MS.gene32869:intron |
| CTCTTTCCTCTTCACCATTA+AGG | 0.218618 | 3.1:-81730089 | None:intergenic |
| CTTAGGCTTCATAACATTAA+TGG | 0.223971 | 3.1:+81732121 | MS.gene32869:CDS |
| AATATCAATTTATGCATTAT+AGG | 0.225849 | 3.1:-81732248 | None:intergenic |
| ATGGGTTAATTTACCTTAGA+TGG | 0.229234 | 3.1:+81732465 | MS.gene32869:CDS |
| CTTAACTTCTCATCATTATC+AGG | 0.240676 | 3.1:+81730811 | MS.gene32869:CDS |
| TTTCAGAACCAAATTTGTTT+TGG | 0.241303 | 3.1:+81728285 | MS.gene32869:CDS |
| ATATTAATGGGAGTTCTTTA+TGG | 0.250378 | 3.1:+81732314 | MS.gene32869:CDS |
| TGAGAAGCCCAAAACAAATT+TGG | 0.250863 | 3.1:-81728293 | None:intergenic |
| GCATTATACTGTGTATTCTT+TGG | 0.261773 | 3.1:+81728107 | MS.gene32869:CDS |
| CCAAATGGTTATGGGATTCT+TGG | 0.270090 | 3.1:+81726511 | MS.gene32869:CDS |
| TCATAAAACCAGCTGATATC+TGG | 0.294816 | 3.1:-81727838 | None:intergenic |
| GGCATGTTTGGTTCTGTAAC+AGG | 0.296118 | 3.1:+81727668 | MS.gene32869:CDS |
| TCTTTGCTCAATGGCATGTT+TGG | 0.302794 | 3.1:+81727656 | MS.gene32869:CDS |
| GTTAGAAGCAATGAATTCTA+TGG | 0.305839 | 3.1:+81728655 | MS.gene32869:CDS |
| GCTTGAACAGCTGACATAAT+TGG | 0.308881 | 3.1:-81726287 | None:intergenic |
| ATGGGAGTTCTTTATGGTTT+GGG | 0.312017 | 3.1:+81732320 | MS.gene32869:CDS |
| TGCTTCGCTCTTCTTTATGA+TGG | 0.316685 | 3.1:+81732208 | MS.gene32869:CDS |
| GGAAGTCCTACCTTCAACTA+TGG | 0.318637 | 3.1:+81727314 | MS.gene32869:CDS |
| TGCATGTTTCCAAATGGTTA+TGG | 0.320849 | 3.1:+81726502 | MS.gene32869:CDS |
| ACTTCCTAAACTCGGACTTT+TGG | 0.322867 | 3.1:-81732181 | None:intergenic |
| CTTTCAAATCTCTCCATCTA+AGG | 0.323627 | 3.1:-81732478 | None:intergenic |
| AACTATTGAGATTACAGAAT+TGG | 0.325604 | 3.1:-81728264 | None:intergenic |
| TTAGGCTTCATAACATTAAT+GGG | 0.326165 | 3.1:+81732122 | MS.gene32869:CDS |
| TACAGGCTATGAGATATTAA+TGG | 0.327075 | 3.1:+81732301 | MS.gene32869:CDS |
| AACTATAGTTGTTCCTCAAA+TGG | 0.329633 | 3.1:+81726026 | MS.gene32869:CDS |
| TAAAACGGCCACCTTGTAAT+TGG | 0.329711 | 3.1:-81731906 | None:intergenic |
| ATTCGTTGCCAGCTTTCTTA+AGG | 0.331599 | 3.1:+81730169 | MS.gene32869:CDS |
| GCTTCCAGCACTACTTGTTA+TGG | 0.334174 | 3.1:+81726818 | MS.gene32869:CDS |
| AAGGGACAATGAATTCATAT+TGG | 0.343226 | 3.1:+81730188 | MS.gene32869:CDS |
| TTTCATGTCTTGGTTGTGGC+GGG | 0.346388 | 3.1:+81732422 | MS.gene32869:CDS |
| GAGATTCACTCAGACAATTA+GGG | 0.347157 | 3.1:+81726454 | MS.gene32869:intron |
| AATGGGAGTTCTTTATGGTT+TGG | 0.350382 | 3.1:+81732319 | MS.gene32869:CDS |
| CCGGGAAAGTTTGATATTGC+TGG | 0.352558 | 3.1:+81732383 | MS.gene32869:CDS |
| CAGGGAAAACGCTGGACTAT+TGG | 0.360278 | 3.1:+81727784 | MS.gene32869:intron |
| ATATGGTCAGAAAGAGAAAA+AGG | 0.360689 | 3.1:-81730615 | None:intergenic |
| TATGCAGCTTCTGCAGGTCT+TGG | 0.365022 | 3.1:+81728235 | MS.gene32869:intron |
| GCATGTTTCCAAATGGTTAT+GGG | 0.366673 | 3.1:+81726503 | MS.gene32869:CDS |
| TTCGTTGCCAGCTTTCTTAA+GGG | 0.373786 | 3.1:+81730170 | MS.gene32869:CDS |
| CATTGTTTCAGGCATTTGAT+TGG | 0.375360 | 3.1:+81730586 | MS.gene32869:intron |
| GGACTTGGTCTCTATCATCT+TGG | 0.375669 | 3.1:+81726599 | MS.gene32869:CDS |
| CAAATGGTTATGGGATTCTT+GGG | 0.379964 | 3.1:+81726512 | MS.gene32869:CDS |
| TGGGAGAAGTTCAGTATCTA+TGG | 0.388930 | 3.1:+81728625 | MS.gene32869:CDS |
| CCAGGTAATTGCTCTTTAGC+TGG | 0.392454 | 3.1:-81725707 | None:intergenic |
| TCTGTTATCAGCCGCGGAAC+TGG | 0.392882 | 3.1:+81727526 | MS.gene32869:CDS |
| TCTTTAGCTGGGTGTGCTAC+TGG | 0.394583 | 3.1:-81725695 | None:intergenic |
| TTCCATACCTTTGCCAATCA+TGG | 0.396450 | 3.1:+81728082 | MS.gene32869:CDS |
| AGGAACATGCAGGTCCTAGA+TGG | 0.397588 | 3.1:+81728371 | MS.gene32869:CDS |
| ATTGTTTCAGGCATTTGATT+GGG | 0.400092 | 3.1:+81730587 | MS.gene32869:intron |
| AGCTCTCATAACAGTGTATA+TGG | 0.402562 | 3.1:-81730632 | None:intergenic |
| ACACACAATGGTGGCTGCCT+TGG | 0.409130 | 3.1:+81728531 | MS.gene32869:CDS |
| ATTATCAGGCTGGAATGTTA+TGG | 0.409926 | 3.1:+81730825 | MS.gene32869:CDS |
| TTTATGAAGATTAGGTATAT+GGG | 0.415696 | 3.1:-81730755 | None:intergenic |
| CAGTATAATGCTGCCATGAT+TGG | 0.416838 | 3.1:-81728095 | None:intergenic |
| CAGCATTACATTCTGACTCT+TGG | 0.422869 | 3.1:+81725985 | MS.gene32869:CDS |
| CTGATATCTGGATGACTCTT+CGG | 0.422907 | 3.1:-81727826 | None:intergenic |
| CCAAGAATCCCATAACCATT+TGG | 0.423135 | 3.1:-81726511 | None:intergenic |
| CGATTGCCAACTGTAGTTGT+TGG | 0.425209 | 3.1:+81726245 | MS.gene32869:CDS |
| TCATGTCTTGGTTGTGGCGG+GGG | 0.427974 | 3.1:+81732424 | MS.gene32869:CDS |
| CAACAACTACAGTTGGCAAT+CGG | 0.429632 | 3.1:-81726244 | None:intergenic |
| CGAATATTATCAAGTAAAAC+AGG | 0.430454 | 3.1:+81728351 | MS.gene32869:CDS |
| GTCCCTTATGTAACATTCAC+TGG | 0.434961 | 3.1:+81726578 | MS.gene32869:CDS |
| GCTTCGCTCTTCTTTATGAT+GGG | 0.435363 | 3.1:+81732209 | MS.gene32869:CDS |
| CTGAGGATTATCTGCTTCAA+TGG | 0.437077 | 3.1:-81730231 | None:intergenic |
| TGAAGGGAATCCACGATCAT+TGG | 0.440413 | 3.1:-81730655 | None:intergenic |
| ATTTGAGGAACAACTATAGT+TGG | 0.440677 | 3.1:-81726024 | None:intergenic |
| AAGTACACATCGACCTCATA+AGG | 0.441893 | 3.1:-81726335 | None:intergenic |
| GTAATTGGTGGGACTATTGA+AGG | 0.444189 | 3.1:-81731891 | None:intergenic |
| AAAAGTTTCCCCATAGTTGA+AGG | 0.447309 | 3.1:-81727324 | None:intergenic |
| TTGGGCTTCTCATTCTTCCT+CGG | 0.448057 | 3.1:+81728304 | MS.gene32869:CDS |
| ACAGGCTATGAGATATTAAT+GGG | 0.453812 | 3.1:+81732302 | MS.gene32869:CDS |
| CACATAAATGAGTAATATAC+AGG | 0.454030 | 3.1:-81732074 | None:intergenic |
| GGAGTAGCTTCTTTGCTCAA+TGG | 0.454916 | 3.1:+81727647 | MS.gene32869:CDS |
| CATATTTGCATGTAGTCTAC+TGG | 0.455099 | 3.1:+81727454 | MS.gene32869:intron |
| GAAACATGCACTTATAATCA+AGG | 0.460770 | 3.1:-81726489 | None:intergenic |
| TCAGATAATCTCACCCATCT+AGG | 0.467136 | 3.1:-81728385 | None:intergenic |
| ACATTGCTTCCACCCATTTG+AGG | 0.468464 | 3.1:-81726039 | None:intergenic |
| CTTCCCCATTGAAAAGGATA+AGG | 0.469030 | 3.1:-81727296 | None:intergenic |
| ACTATAGTTGTTCCTCAAAT+GGG | 0.470243 | 3.1:+81726027 | MS.gene32869:CDS |
| CTATCATCTTGGTTTCCCTA+TGG | 0.472164 | 3.1:+81726610 | MS.gene32869:CDS |
| GTCTTATTAGTTCTGCTCCA+TGG | 0.472828 | 3.1:+81727103 | MS.gene32869:CDS |
| AGTCCAGTGAATGTTACATA+AGG | 0.473008 | 3.1:-81726581 | None:intergenic |
| TTATCAGCCGCGGAACTGGC+TGG | 0.474227 | 3.1:+81727530 | MS.gene32869:CDS |
| CTGGCAACATGTGTTGAAGT+TGG | 0.474802 | 3.1:+81726795 | MS.gene32869:CDS |
| GGAAATAATGCTGGCGGTGG+CGG | 0.475933 | 3.1:+81725611 | MS.gene32869:CDS |
| TAAGAGGTGGCATGTGCTGC+TGG | 0.476221 | 3.1:-81731964 | None:intergenic |
| AATGCTGGCGGTGGCGGTGA+TGG | 0.476328 | 3.1:+81725617 | MS.gene32869:CDS |
| ACACGTCACCAAGTGCTTGC+CGG | 0.479543 | 3.1:+81730849 | MS.gene32869:CDS |
| ATAATGAGACGCTTAATGTC+TGG | 0.481907 | 3.1:+81730268 | MS.gene32869:CDS |
| TATAAGTGCATGTTTCCAAA+TGG | 0.482279 | 3.1:+81726496 | MS.gene32869:CDS |
| TTGGGATATGCAGCTTCTGC+AGG | 0.486729 | 3.1:+81728229 | MS.gene32869:intron |
| CTTACTAAGGAAAAGTGTTC+CGG | 0.487787 | 3.1:-81730868 | None:intergenic |
| CAGCCGCGGAACTGGCTGGC+TGG | 0.489535 | 3.1:+81727534 | MS.gene32869:CDS |
| TCATTGTCCCTTAAGAAAGC+TGG | 0.491598 | 3.1:-81730177 | None:intergenic |
| TCACATCAGGCAAATGTTGA+AGG | 0.491619 | 3.1:-81730672 | None:intergenic |
| ACTTCTCATCATTATCAGGC+TGG | 0.497246 | 3.1:+81730815 | MS.gene32869:CDS |
| TTGAAGAAATGTGCTTAGTC+CGG | 0.498808 | 3.1:-81726207 | None:intergenic |
| CAACATATGGCTCAAAATGA+AGG | 0.499264 | 3.1:+81725572 | None:intergenic |
| TTTCCCGGCATCCACCTCTC+TGG | 0.499346 | 3.1:-81732368 | None:intergenic |
| GATACCAGAGAGGTGGATGC+CGG | 0.499385 | 3.1:+81732364 | MS.gene32869:CDS |
| GAAGGTGGAGATGGTGGGAA+TGG | 0.499508 | 3.1:+81725590 | MS.gene32869:CDS |
| AACAACTACAGTTGGCAATC+GGG | 0.501292 | 3.1:-81726243 | None:intergenic |
| AAGTAGAGGTAACAAAAGAA+AGG | 0.502445 | 3.1:-81732101 | None:intergenic |
| GAAGTCCTACCTTCAACTAT+GGG | 0.504820 | 3.1:+81727315 | MS.gene32869:CDS |
| GCATAAATTGATATTGCATA+GGG | 0.506029 | 3.1:+81732256 | MS.gene32869:CDS |
| CCTGTAGTTTGCAATGCCTC+AGG | 0.506769 | 3.1:-81732284 | None:intergenic |
| CCAGCAATATCAAACTTTCC+CGG | 0.507254 | 3.1:-81732383 | None:intergenic |
| TGGCAACATGTGTTGAAGTT+GGG | 0.508157 | 3.1:+81726796 | MS.gene32869:CDS |
| CAACATTTGCCTGATGTGAT+CGG | 0.510351 | 3.1:+81730676 | MS.gene32869:CDS |
| GTAGGACTTCCCCATTGAAA+AGG | 0.513415 | 3.1:-81727302 | None:intergenic |
| AACGGCCACCTTGTAATTGG+TGG | 0.514162 | 3.1:-81731903 | None:intergenic |
| CAATAGTCCCACCAATTACA+AGG | 0.519486 | 3.1:+81731895 | MS.gene32869:CDS |
| AAAACCATAACAAGTAGTGC+TGG | 0.520610 | 3.1:-81726822 | None:intergenic |
| ATACCAGAGAGGTGGATGCC+GGG | 0.521141 | 3.1:+81732365 | MS.gene32869:CDS |
| GAACATAGCTCCTCCTAAGA+AGG | 0.521925 | 3.1:-81731931 | None:intergenic |
| ATGCTCAGAGTTGACTATGC+TGG | 0.522550 | 3.1:+81732017 | MS.gene32869:CDS |
| TGGAAAACAAAACTGCAAAT+CGG | 0.523327 | 3.1:-81726981 | None:intergenic |
| CCTCCTAAGAAGGCATAAAA+CGG | 0.523408 | 3.1:-81731921 | None:intergenic |
| CCTGAGGCATTGCAAACTAC+AGG | 0.527374 | 3.1:+81732284 | MS.gene32869:CDS |
| GTCCAGTGAATGTTACATAA+GGG | 0.527838 | 3.1:-81726580 | None:intergenic |
| GCTGGCGGTGGCGGTGATGG+CGG | 0.532310 | 3.1:+81725620 | MS.gene32869:CDS |
| CAAAATGAAGGTGGAGATGG+TGG | 0.533623 | 3.1:+81725584 | MS.gene32869:CDS |
| AGTAGAGGTAACAAAAGAAA+GGG | 0.537603 | 3.1:-81732100 | None:intergenic |
| CAGGTAATTGCTCTTTAGCT+GGG | 0.537966 | 3.1:-81725706 | None:intergenic |
| TTCATGTCTTGGTTGTGGCG+GGG | 0.538064 | 3.1:+81732423 | MS.gene32869:CDS |
| TATGTAACATTCACTGGACT+TGG | 0.538442 | 3.1:+81726584 | MS.gene32869:CDS |
| CACGGGCTGCATCATATTCA+CGG | 0.542160 | 3.1:-81728582 | None:intergenic |
| ACTGCAAATCGGTCAAATGT+AGG | 0.543952 | 3.1:-81726970 | None:intergenic |
| GATTATGGAGAAATGCTGTC+AGG | 0.547810 | 3.1:+81726534 | MS.gene32869:CDS |
| TGTTTCAACTCAGTTGGAGA+AGG | 0.550204 | 3.1:+81726154 | MS.gene32869:intron |
| ATTTCAATCCACTGTCATCA+CGG | 0.551720 | 3.1:-81728600 | None:intergenic |
| AAAGTGTTCCGGCAAGCACT+TGG | 0.552548 | 3.1:-81730857 | None:intergenic |
| GGTGGGAATGGAAATAATGC+TGG | 0.552918 | 3.1:+81725602 | MS.gene32869:CDS |
| CTGATAACAGAAGGTGGCAC+GGG | 0.553647 | 3.1:-81727514 | None:intergenic |
| ATGGTACGTGGTACAAGTGA+AGG | 0.553929 | 3.1:+81730036 | MS.gene32869:CDS |
| AAATACTAACGCCAAGGTGG+AGG | 0.555562 | 3.1:-81725752 | None:intergenic |
| TGCATAAATTGATATTGCAT+AGG | 0.556767 | 3.1:+81732255 | MS.gene32869:CDS |
| CTCTGAGCATAATGTAGGAA+AGG | 0.557613 | 3.1:-81732004 | None:intergenic |
| AGAGTCATCCAGATATCAGC+TGG | 0.558329 | 3.1:+81727830 | MS.gene32869:CDS |
| TAAAATCCTTAATGGTGAAG+AGG | 0.559353 | 3.1:+81730083 | MS.gene32869:CDS |
| CAGACAATTAGGGGAATACA+AGG | 0.563418 | 3.1:+81726464 | MS.gene32869:CDS |
| AAAGAGAACATTCAAAGGTA+CGG | 0.563842 | 3.1:+81730106 | MS.gene32869:CDS |
| GCATATACACATTATCGCGA+TGG | 0.565663 | 3.1:+81732446 | MS.gene32869:CDS |
| GTTTCCCCATAGTTGAAGGT+AGG | 0.565886 | 3.1:-81727320 | None:intergenic |
| TTATGAAGATTAGGTATATG+GGG | 0.566989 | 3.1:-81730754 | None:intergenic |
| GGAACATGCAGGTCCTAGAT+GGG | 0.568067 | 3.1:+81728372 | MS.gene32869:CDS |
| AGTTGCCGCACTGACCGTGC+TGG | 0.569095 | 3.1:+81727081 | MS.gene32869:CDS |
| AACTCAGTTGGAGAAGGCCA+AGG | 0.569555 | 3.1:+81726160 | MS.gene32869:intron |
| TTTCAATCCACTGTCATCAC+GGG | 0.569622 | 3.1:-81728599 | None:intergenic |
| ACGGCCACCTTGTAATTGGT+GGG | 0.571610 | 3.1:-81731902 | None:intergenic |
| GGACAACACAAAGTGGGCTA+AGG | 0.572132 | 3.1:-81726559 | None:intergenic |
| TGCCATGATTGGCAAAGGTA+TGG | 0.573927 | 3.1:-81728084 | None:intergenic |
| CAAGTAAAACAGGAACATGC+AGG | 0.574966 | 3.1:+81728361 | MS.gene32869:CDS |
| GTCAACTCTGAGCATAATGT+AGG | 0.579308 | 3.1:-81732009 | None:intergenic |
| TTCATATACAGATCCTTATG+AGG | 0.584344 | 3.1:+81726322 | MS.gene32869:CDS |
| CTATTGGCATTGACAAGAGT+GGG | 0.584625 | 3.1:+81727800 | MS.gene32869:CDS |
| CTTAGATGGAGAGATTTGAA+AGG | 0.585580 | 3.1:+81732479 | MS.gene32869:CDS |
| CAAGAGTCAGAATGTAATGC+TGG | 0.586166 | 3.1:-81725984 | None:intergenic |
| AGAACATTCAAAGGTACGGA+AGG | 0.586765 | 3.1:+81730110 | MS.gene32869:CDS |
| CATATACACATTATCGCGAT+GGG | 0.591418 | 3.1:+81732447 | MS.gene32869:CDS |
| CCAGCTAAAGAGCAATTACC+TGG | 0.592250 | 3.1:+81725707 | MS.gene32869:CDS |
| ACGGGCTGCATCATATTCAC+GGG | 0.601131 | 3.1:-81728581 | None:intergenic |
| ACTATTGGCATTGACAAGAG+TGG | 0.602157 | 3.1:+81727799 | MS.gene32869:CDS |
| CACATCAGGCAAATGTTGAA+GGG | 0.603623 | 3.1:-81730671 | None:intergenic |
| TAATATTCGGTGAAATATTG+CGG | 0.603876 | 3.1:-81728337 | None:intergenic |
| AATGGAAATAATGCTGGCGG+TGG | 0.605700 | 3.1:+81725608 | MS.gene32869:CDS |
| GCTCAAAATGAAGGTGGAGA+TGG | 0.606475 | 3.1:+81725581 | MS.gene32869:CDS |
| GTTGCGAGTGACAAGCTAAG+AGG | 0.607295 | 3.1:-81731980 | None:intergenic |
| AAATAACCATGCACTTGCAA+TGG | 0.607464 | 3.1:-81727001 | None:intergenic |
| CAACGTACTCTGAATCACCT+TGG | 0.609774 | 3.1:-81726177 | None:intergenic |
| GCTGATAACAGAAGGTGGCA+CGG | 0.610840 | 3.1:-81727515 | None:intergenic |
| TATGAAGATTAGGTATATGG+GGG | 0.612249 | 3.1:-81730753 | None:intergenic |
| ATGACAGTGGATTGAAATGG+TGG | 0.613573 | 3.1:+81728605 | MS.gene32869:CDS |
| ATAGTTGTTCCTCAAATGGG+TGG | 0.613909 | 3.1:+81726030 | MS.gene32869:CDS |
| CATATTCGCTTCACACACAA+TGG | 0.614250 | 3.1:+81728519 | MS.gene32869:CDS |
| AATGCTGCCATGATTGGCAA+AGG | 0.615074 | 3.1:-81728089 | None:intergenic |
| TGGTTTGAAAGACGAAACGA+TGG | 0.615591 | 3.1:+81731857 | MS.gene32869:CDS |
| GCATAAATAGTCCTCCACCT+TGG | 0.616612 | 3.1:+81725741 | MS.gene32869:CDS |
| CCACCTTCTGTTATCAGCCG+CGG | 0.618128 | 3.1:+81727520 | MS.gene32869:CDS |
| TATGAACCAACAACTACAGT+TGG | 0.620524 | 3.1:-81726251 | None:intergenic |
| ACATAAGGGACAACACAAAG+TGG | 0.621509 | 3.1:-81726566 | None:intergenic |
| TCGCGAGGATACCAGAGAGG+TGG | 0.627347 | 3.1:+81732357 | MS.gene32869:CDS |
| TGGTACGTGGTACAAGTGAA+GGG | 0.629294 | 3.1:+81730037 | MS.gene32869:CDS |
| GTGATGACAGTGGATTGAAA+TGG | 0.630250 | 3.1:+81728602 | MS.gene32869:CDS |
| TTTATGCAATATTGAACACC+AGG | 0.630678 | 3.1:-81725725 | None:intergenic |
| AGCACGGTACTTCCTAAACT+CGG | 0.631982 | 3.1:-81732189 | None:intergenic |
| ATCCAAAATGAAAGCAACCA+AGG | 0.632215 | 3.1:-81728548 | None:intergenic |
| GTTCCGCGGCTGATAACAGA+AGG | 0.632250 | 3.1:-81727523 | None:intergenic |
| CATATGGCTCAAAATGAAGG+TGG | 0.633129 | 3.1:+81725575 | None:intergenic |
| AGAGGAAAGAGAACATTCAA+AGG | 0.634153 | 3.1:+81730101 | MS.gene32869:CDS |
| TGAAAATACTAACGCCAAGG+TGG | 0.634498 | 3.1:-81725755 | None:intergenic |
| ATTGCATAGGGAAGAGCCTG+AGG | 0.644599 | 3.1:+81732268 | MS.gene32869:CDS |
| CATAAGGGACAACACAAAGT+GGG | 0.647050 | 3.1:-81726565 | None:intergenic |
| TTACCAGCCAGCCAGTTCCG+CGG | 0.648530 | 3.1:-81727537 | None:intergenic |
| ATGTTATGAAGCCTAAGTAG+AGG | 0.652407 | 3.1:-81732115 | None:intergenic |
| GCGAGTGACAAGCTAAGAGG+TGG | 0.652715 | 3.1:-81731977 | None:intergenic |
| AGATTCACTCAGACAATTAG+GGG | 0.653216 | 3.1:+81726455 | MS.gene32869:CDS |
| GAGCTTTAATTTATGTCGCG+AGG | 0.653762 | 3.1:+81732342 | MS.gene32869:CDS |
| TGACAGTGGATTGAAATGGT+GGG | 0.657332 | 3.1:+81728606 | MS.gene32869:CDS |
| CCGCGGCTGATAACAGAAGG+TGG | 0.657716 | 3.1:-81727520 | None:intergenic |
| GCTTATTTCAGGGAAAACGC+TGG | 0.661694 | 3.1:+81727776 | MS.gene32869:intron |
| TATGAGAGCTCCAATGATCG+TGG | 0.662530 | 3.1:+81730645 | MS.gene32869:CDS |
| CACATTGCAGAGATGGTACG+TGG | 0.666052 | 3.1:+81730024 | MS.gene32869:intron |
| ATTCGCTTCACACACAATGG+TGG | 0.666772 | 3.1:+81728522 | MS.gene32869:CDS |
| AAAATGAAGGTGGAGATGGT+GGG | 0.674832 | 3.1:+81725585 | MS.gene32869:CDS |
| ATAAATGAGTAATATACAGG+AGG | 0.676732 | 3.1:-81732071 | None:intergenic |
| TATGAATTGAGAAAATGCTG+AGG | 0.680938 | 3.1:-81730248 | None:intergenic |
| TCATAAAGAAGAGCGAAGCA+CGG | 0.686713 | 3.1:-81732205 | None:intergenic |
| GATGCAGCCCGTGATGACAG+TGG | 0.690780 | 3.1:+81728592 | MS.gene32869:CDS |
| AAGTCCTACCTTCAACTATG+GGG | 0.694616 | 3.1:+81727316 | MS.gene32869:CDS |
| TGGATTATTATCGATCAGAG+TGG | 0.698988 | 3.1:+81730208 | MS.gene32869:CDS |
| TAAGACCAGCACGGTCAGTG+CGG | 0.712401 | 3.1:-81727086 | None:intergenic |
| GGGAATGGAAATAATGCTGG+CGG | 0.720922 | 3.1:+81725605 | MS.gene32869:CDS |
| CAGAACTAATAAGACCAGCA+CGG | 0.727218 | 3.1:-81727095 | None:intergenic |
| ATGTCGCGAGGATACCAGAG+AGG | 0.734846 | 3.1:+81732354 | MS.gene32869:CDS |
| TAGTCCCACCAATTACAAGG+TGG | 0.753371 | 3.1:+81731898 | MS.gene32869:CDS |
| ATTGCGGTATTGAGACACCG+AGG | 0.806570 | 3.1:-81728321 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81725578 | 81732508 | 81725578 | ID=MS.gene32869 |
| chr3.1 | mRNA | 81725578 | 81732508 | 81725578 | ID=MS.gene32869.t1;Parent=MS.gene32869 |
| chr3.1 | exon | 81725578 | 81725764 | 81725578 | ID=MS.gene32869.t1.exon1;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81725578 | 81725764 | 81725578 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81725962 | 81726059 | 81725962 | ID=MS.gene32869.t1.exon2;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81725962 | 81726059 | 81725962 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81726167 | 81726343 | 81726167 | ID=MS.gene32869.t1.exon3;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81726167 | 81726343 | 81726167 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81726455 | 81726631 | 81726455 | ID=MS.gene32869.t1.exon4;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81726455 | 81726631 | 81726455 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81726795 | 81726854 | 81726795 | ID=MS.gene32869.t1.exon5;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81726795 | 81726854 | 81726795 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81726940 | 81727124 | 81726940 | ID=MS.gene32869.t1.exon6;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81726940 | 81727124 | 81726940 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81727286 | 81727382 | 81727286 | ID=MS.gene32869.t1.exon7;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81727286 | 81727382 | 81727286 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81727469 | 81727555 | 81727469 | ID=MS.gene32869.t1.exon8;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81727469 | 81727555 | 81727469 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81727647 | 81727705 | 81727647 | ID=MS.gene32869.t1.exon9;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81727647 | 81727705 | 81727647 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81727787 | 81727878 | 81727787 | ID=MS.gene32869.t1.exon10;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81727787 | 81727878 | 81727787 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81728060 | 81728137 | 81728060 | ID=MS.gene32869.t1.exon11;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81728060 | 81728137 | 81728060 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81728242 | 81728393 | 81728242 | ID=MS.gene32869.t1.exon12;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81728242 | 81728393 | 81728242 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81728499 | 81728676 | 81728499 | ID=MS.gene32869.t1.exon13;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81728499 | 81728676 | 81728499 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81730034 | 81730292 | 81730034 | ID=MS.gene32869.t1.exon14;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81730034 | 81730292 | 81730034 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81730597 | 81730885 | 81730597 | ID=MS.gene32869.t1.exon15;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81730597 | 81730885 | 81730597 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| chr3.1 | exon | 81731855 | 81732508 | 81731855 | ID=MS.gene32869.t1.exon16;Parent=MS.gene32869.t1 |
| chr3.1 | CDS | 81731855 | 81732508 | 81731855 | ID=cds.MS.gene32869.t1;Parent=MS.gene32869.t1 |
| Gene Sequence |
| Protein sequence |