Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32919.t1 | XP_003603098.1 | 96.9 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 1.60E-176 | 628.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32919.t1 | Q8GXG1 | 84.3 | 325 | 48 | 1 | 1 | 322 | 1 | 325 | 6.9e-157 | 554.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32919.t1 | G7J705 | 96.9 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 1.1e-176 | 628.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054742 | MS.gene32919 | 0.812853 | 3.44E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene32919 | 0.827627 | 1.41E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033042 | MS.gene32919 | PPI |
| MS.gene32919 | MS.gene033041 | PPI |
| MS.gene32919 | MS.gene063515 | PPI |
| MS.gene32919 | MS.gene044476 | PPI |
| MS.gene32919 | MS.gene063514 | PPI |
| MS.gene32919 | MS.gene038825 | PPI |
| MS.gene32919 | MS.gene044475 | PPI |
| MS.gene32919 | MS.gene038824 | PPI |
| MS.gene03345 | MS.gene32919 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32919.t1 | MTR_3g102370 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0.0 | 642 |
| MS.gene32919.t1 | MTR_1g094030 | 87.578 | 322 | 38 | 1 | 1 | 322 | 1 | 320 | 0.0 | 580 |
| MS.gene32919.t1 | MTR_1g018760 | 86.154 | 325 | 42 | 2 | 1 | 322 | 1 | 325 | 0.0 | 572 |
| MS.gene32919.t1 | MTR_4g109900 | 59.006 | 322 | 124 | 2 | 3 | 321 | 2 | 318 | 8.65e-130 | 373 |
| MS.gene32919.t1 | MTR_4g109920 | 57.764 | 322 | 129 | 3 | 3 | 321 | 2 | 319 | 8.72e-127 | 365 |
| MS.gene32919.t1 | MTR_8g031580 | 28.990 | 307 | 171 | 7 | 6 | 277 | 23 | 317 | 4.92e-26 | 106 |
| MS.gene32919.t1 | MTR_8g031580 | 28.990 | 307 | 171 | 7 | 6 | 277 | 23 | 317 | 1.44e-25 | 105 |
| MS.gene32919.t1 | MTR_3g008180 | 28.571 | 252 | 157 | 6 | 67 | 297 | 77 | 326 | 9.36e-17 | 80.1 |
| MS.gene32919.t1 | MTR_8g031580 | 26.201 | 229 | 124 | 6 | 85 | 278 | 1 | 219 | 1.68e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32919.t1 | AT3G16150 | 84.308 | 325 | 48 | 1 | 1 | 322 | 1 | 325 | 0.0 | 565 |
| MS.gene32919.t1 | AT5G08100 | 57.716 | 324 | 122 | 3 | 1 | 321 | 1 | 312 | 8.16e-127 | 365 |
| MS.gene32919.t1 | AT5G08100 | 56.967 | 244 | 91 | 2 | 80 | 321 | 1 | 232 | 4.44e-93 | 276 |
| MS.gene32919.t1 | AT4G00590 | 27.564 | 312 | 185 | 7 | 6 | 282 | 15 | 320 | 6.97e-20 | 89.7 |
| MS.gene32919.t1 | AT5G61540 | 28.947 | 266 | 150 | 9 | 67 | 300 | 80 | 338 | 4.55e-18 | 84.3 |
| MS.gene32919.t1 | AT4G00590 | 26.174 | 298 | 192 | 6 | 6 | 282 | 15 | 305 | 3.13e-16 | 79.3 |
| MS.gene32919.t1 | AT5G61540 | 29.167 | 240 | 131 | 9 | 93 | 300 | 4 | 236 | 9.60e-15 | 73.2 |
| MS.gene32919.t1 | AT5G61540 | 29.167 | 240 | 131 | 9 | 93 | 300 | 4 | 236 | 9.60e-15 | 73.2 |
Find 91 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATGGAGGTTGGAATT+TGG | 0.172718 | 3.1:+81294762 | MS.gene32919:CDS |
| GTTCATGGAGGTTGGAATTT+GGG | 0.266618 | 3.1:+81294763 | MS.gene32919:CDS |
| TCAATTGTAATGGAATGTTT+AGG | 0.266625 | 3.1:+81294720 | MS.gene32919:CDS |
| TCTTATTGCTGTGTCTAATA+AGG | 0.277779 | 3.1:+81294679 | MS.gene32919:CDS |
| CAATTGTAATGGAATGTTTA+GGG | 0.287602 | 3.1:+81294721 | MS.gene32919:CDS |
| AATAAGGGTGAAGTGGCTTA+TGG | 0.294879 | 3.1:+81294695 | MS.gene32919:CDS |
| CGTCTTGATGAAGGGTTTGC+TGG | 0.320904 | 3.1:+81294656 | MS.gene32919:CDS |
| GGTTGGGCTATTGCTGTTCA+TGG | 0.339677 | 3.1:+81293405 | MS.gene32919:CDS |
| CTTCTTCCTGACGGTGTGTT+GGG | 0.348702 | 3.1:-81293452 | None:intergenic |
| TGTGCTGCTGCAACCTCAAC+TGG | 0.368919 | 3.1:+81294431 | MS.gene32919:CDS |
| AAAGGAAGCTAATACAATAT+TGG | 0.379155 | 3.1:+81294173 | MS.gene32919:CDS |
| TGACGGTGTGTTGGGAGATT+AGG | 0.380062 | 3.1:-81293444 | None:intergenic |
| TTTCAGCATACCAACATTAT+CGG | 0.395803 | 3.1:-81294145 | None:intergenic |
| AGGGGATGTGCAACTGAGAA+TGG | 0.403815 | 3.1:+81294740 | MS.gene32919:CDS |
| ATAAGGGTGAAGTGGCTTAT+GGG | 0.407004 | 3.1:+81294696 | MS.gene32919:CDS |
| ACAAGACGAGCAAGAGAGAT+AGG | 0.408661 | 3.1:-81293931 | None:intergenic |
| AGCAAAAGGAACGGTGGAAA+TGG | 0.416209 | 3.1:+81293840 | MS.gene32919:CDS |
| GCTTATGGGTTCAATTGTAA+TGG | 0.420402 | 3.1:+81294710 | MS.gene32919:CDS |
| CTCTCTTGCTCGTCTTGTAA+TGG | 0.424211 | 3.1:+81293936 | MS.gene32919:CDS |
| CTTACCGAATGTCTCAATCT+TGG | 0.425909 | 3.1:+81293486 | MS.gene32919:CDS |
| CATTCTTACCTCGCCTTCTC+CGG | 0.431764 | 3.1:+81293970 | MS.gene32919:CDS |
| CTTATTGCTGTGTCTAATAA+GGG | 0.432612 | 3.1:+81294680 | MS.gene32919:CDS |
| GCTTCTTCCTGACGGTGTGT+TGG | 0.433299 | 3.1:-81293453 | None:intergenic |
| ATTGCTGTTCATGGCGGCGC+AGG | 0.433314 | 3.1:+81293414 | MS.gene32919:CDS |
| TTCAGCATACCAACATTATC+GGG | 0.458771 | 3.1:-81294144 | None:intergenic |
| GGATCTGCTCTGACAGCAAA+AGG | 0.463031 | 3.1:+81293826 | MS.gene32919:CDS |
| ATTAAGCATCGTCTTGATGA+AGG | 0.463221 | 3.1:+81294647 | MS.gene32919:CDS |
| AACAAAATGAGTGGTCGAAT+CGG | 0.464428 | 3.1:+81294464 | MS.gene32919:CDS |
| AGAAGAATTTGCTAGGGAAC+AGG | 0.465537 | 3.1:+81293996 | MS.gene32919:CDS |
| GACGTCGAGTGCGGAAGCAT+TGG | 0.472505 | 3.1:-81293526 | None:intergenic |
| TGCAACTGAGAATGGGTTCA+TGG | 0.477091 | 3.1:+81294748 | MS.gene32919:CDS |
| ACCACACATCCGACGGTCTC+CGG | 0.480495 | 3.1:-81294389 | None:intergenic |
| TAATCTCCCAACACACCGTC+AGG | 0.481716 | 3.1:+81293446 | MS.gene32919:CDS |
| ACGTGAAGTGGCTGCAGTTA+TGG | 0.491646 | 3.1:+81294583 | MS.gene32919:CDS |
| AAATTCTTCTGCACCGGAGA+AGG | 0.500532 | 3.1:-81293983 | None:intergenic |
| GAGAATGGGTTCATGGAGGT+TGG | 0.502391 | 3.1:+81294755 | MS.gene32919:CDS |
| ATCGGTGATTCACCTCTCAT+AGG | 0.503828 | 3.1:+81294482 | MS.gene32919:CDS |
| GATAGTCCAGTGAAAATGAA+TGG | 0.507847 | 3.1:+81294344 | MS.gene32919:CDS |
| GATTCACCTCTCATAGGTGC+TGG | 0.508182 | 3.1:+81294488 | MS.gene32919:CDS |
| CCTAGCAAATTCTTCTGCAC+CGG | 0.509592 | 3.1:-81293989 | None:intergenic |
| GTGTGTGGAGTTTCTTGCAC+TGG | 0.514229 | 3.1:+81294527 | MS.gene32919:CDS |
| GGGGATGTGCAACTGAGAAT+GGG | 0.515436 | 3.1:+81294741 | MS.gene32919:CDS |
| TACAGCACCACATCTTCTCT+TGG | 0.517030 | 3.1:-81293884 | None:intergenic |
| GTTCATTAACCCTCCAGTTG+AGG | 0.518302 | 3.1:-81294444 | None:intergenic |
| GGAGTTTCTTGCACTGGTGA+AGG | 0.536295 | 3.1:+81294533 | MS.gene32919:CDS |
| GGAAATGGAGGCTAGTATCA+TGG | 0.537266 | 3.1:+81293855 | MS.gene32919:CDS |
| GATACCAAGATTGAGACATT+CGG | 0.538052 | 3.1:-81293490 | None:intergenic |
| CCGGTGCAGAAGAATTTGCT+AGG | 0.539891 | 3.1:+81293989 | MS.gene32919:CDS |
| GACCGTCGGATGTGTGGTGG+TGG | 0.541481 | 3.1:+81294394 | MS.gene32919:CDS |
| GCTGTTTCGCTTCTTCCTGA+CGG | 0.541711 | 3.1:-81293461 | None:intergenic |
| GTTATGGAGTACAAAGGCTA+TGG | 0.546040 | 3.1:+81294599 | MS.gene32919:CDS |
| TGGCACTCTTGCACGTGAAG+TGG | 0.556232 | 3.1:+81294571 | MS.gene32919:CDS |
| TTCATCACTCCCGATAATGT+TGG | 0.557667 | 3.1:+81294135 | MS.gene32919:CDS |
| AATTGTAATGGAATGTTTAG+GGG | 0.558475 | 3.1:+81294722 | MS.gene32919:CDS |
| GAGAAGGCGAGGTAAGAATG+AGG | 0.562126 | 3.1:-81293967 | None:intergenic |
| CTATGGACTTCAACAAGCTG+TGG | 0.581002 | 3.1:+81294616 | MS.gene32919:CDS |
| GTTTGATTATCGAATTCCAA+CGG | 0.581762 | 3.1:+81294304 | MS.gene32919:intron |
| GCCGGAGACCGTCGGATGTG+TGG | 0.582295 | 3.1:+81294388 | MS.gene32919:CDS |
| GAAGGTGAAGCTATCATTCG+TGG | 0.583136 | 3.1:+81294551 | MS.gene32919:CDS |
| TGTTCATGGCGGCGCAGGTG+TGG | 0.589949 | 3.1:+81293419 | MS.gene32919:CDS |
| GCCGATGAGCATTTACGCGC+CGG | 0.592527 | 3.1:+81294370 | MS.gene32919:CDS |
| AGAAGGCGAGGTAAGAATGA+GGG | 0.593655 | 3.1:-81293966 | None:intergenic |
| CCACGGCCAGAATTGAAAAG+TGG | 0.595287 | 3.1:-81293805 | None:intergenic |
| TTAAGCATCGTCTTGATGAA+GGG | 0.596066 | 3.1:+81294648 | MS.gene32919:CDS |
| TTGCTGTCAGAGCAGATCCA+CGG | 0.605965 | 3.1:-81293822 | None:intergenic |
| TGCTCTGACAGCAAAAGGAA+CGG | 0.607232 | 3.1:+81293831 | MS.gene32919:CDS |
| TTTCTAGGGCGTGGAGACTG+AGG | 0.612061 | 3.1:+81294101 | MS.gene32919:intron |
| GTCCACCACCACACATCCGA+CGG | 0.619811 | 3.1:-81294396 | None:intergenic |
| TGTGTCTAATAAGGGTGAAG+TGG | 0.621047 | 3.1:+81294688 | MS.gene32919:CDS |
| AAAAGGAACGGTGGAAATGG+AGG | 0.622339 | 3.1:+81293843 | MS.gene32919:CDS |
| CGGTGCAGAAGAATTTGCTA+GGG | 0.622722 | 3.1:+81293990 | MS.gene32919:CDS |
| GAAGGCGAGGTAAGAATGAG+GGG | 0.630197 | 3.1:-81293965 | None:intergenic |
| ATTTACGCGCCGGAGACCGT+CGG | 0.633728 | 3.1:+81294380 | MS.gene32919:CDS |
| ATGGAGGCTAGTATCATGGA+TGG | 0.635651 | 3.1:+81293859 | MS.gene32919:CDS |
| GCTGCTGCAACCTCAACTGG+AGG | 0.639990 | 3.1:+81294434 | MS.gene32919:CDS |
| TCCGGCGCGTAAATGCTCAT+CGG | 0.640097 | 3.1:-81294371 | None:intergenic |
| AAGTTCGACGACGTCGAGTG+CGG | 0.645430 | 3.1:-81293535 | None:intergenic |
| CTGCTGCAACCTCAACTGGA+GGG | 0.645800 | 3.1:+81294435 | MS.gene32919:CDS |
| CGAGTGCGGAAGCATTGGAT+CGG | 0.648150 | 3.1:-81293521 | None:intergenic |
| TAAGTTCCAGCACCTATGAG+AGG | 0.650295 | 3.1:-81294494 | None:intergenic |
| CTTCTGCACCGGAGAAGGCG+AGG | 0.656386 | 3.1:-81293978 | None:intergenic |
| GGAGACCGTCGGATGTGTGG+TGG | 0.674288 | 3.1:+81294391 | MS.gene32919:CDS |
| GATGGTACCAAGAGAAGATG+TGG | 0.682088 | 3.1:+81293877 | MS.gene32919:CDS |
| TGGTATGCTGAAACTCGCAA+AGG | 0.682548 | 3.1:+81294155 | MS.gene32919:CDS |
| TGGGCTATTGCTGTTCATGG+CGG | 0.684758 | 3.1:+81293408 | MS.gene32919:CDS |
| GCTGCAGTTATGGAGTACAA+AGG | 0.689411 | 3.1:+81294593 | MS.gene32919:CDS |
| ACTTATGCATGTGAAGTGTG+TGG | 0.696667 | 3.1:+81294512 | MS.gene32919:CDS |
| GGGTTAATGAACAAAATGAG+TGG | 0.702733 | 3.1:+81294455 | MS.gene32919:CDS |
| TCTGACAGCAAAAGGAACGG+TGG | 0.711989 | 3.1:+81293834 | MS.gene32919:CDS |
| TGTGTGGTGGTGGACAGTCA+AGG | 0.729603 | 3.1:+81294404 | MS.gene32919:CDS |
| AACTGAGAATGGGTTCATGG+AGG | 0.788867 | 3.1:+81294751 | MS.gene32919:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATATTATTGTCATTA+TGG | - | chr3.1:81293692-81293711 | None:intergenic | 10.0% |
| !! | AATATTTATAGATCAAAAAT+TGG | - | chr3.1:81294049-81294068 | None:intergenic | 10.0% |
| !! | ATTTATATCATTCATAATCA+TGG | + | chr3.1:81293607-81293626 | MS.gene32919:intron | 15.0% |
| !! | GATTATGAATGATATAAATT+AGG | - | chr3.1:81293606-81293625 | None:intergenic | 15.0% |
| !! | TTTATATCATTCATAATCAT+GGG | + | chr3.1:81293608-81293627 | MS.gene32919:intron | 15.0% |
| !!! | GTTTTTAATCAAAAGATATT+TGG | + | chr3.1:81294070-81294089 | MS.gene32919:intron | 15.0% |
| !! | AAATTAGGTTAGGTTTATTA+CGG | - | chr3.1:81293591-81293610 | None:intergenic | 20.0% |
| !! | TGAATGATATAAATTAGGTT+AGG | - | chr3.1:81293601-81293620 | None:intergenic | 20.0% |
| !! | TTATTATTGAATGTGTTTGA+TGG | + | chr3.1:81294270-81294289 | MS.gene32919:intron | 20.0% |
| !!! | TTCTGTTTTAGTTGATTTTA+GGG | + | chr3.1:81293746-81293765 | MS.gene32919:intron | 20.0% |
| !!! | TTTCTGTTTTAGTTGATTTT+AGG | + | chr3.1:81293745-81293764 | MS.gene32919:intron | 20.0% |
| ! | AAAGGAAGCTAATACAATAT+TGG | + | chr3.1:81294173-81294192 | MS.gene32919:CDS | 25.0% |
| ! | TCACTTGTGTAATTAAAATG+TGG | + | chr3.1:81294232-81294251 | MS.gene32919:intron | 25.0% |
| !! | AATTGTAATGGAATGTTTAG+GGG | + | chr3.1:81294722-81294741 | MS.gene32919:CDS | 25.0% |
| !! | CAATTGTAATGGAATGTTTA+GGG | + | chr3.1:81294721-81294740 | MS.gene32919:CDS | 25.0% |
| !! | TCAATTGTAATGGAATGTTT+AGG | + | chr3.1:81294720-81294739 | MS.gene32919:CDS | 25.0% |
| !!! | ATTTGGTCATGTTTTTTCTA+GGG | + | chr3.1:81294087-81294106 | MS.gene32919:intron | 25.0% |
| !!! | TATTTGGTCATGTTTTTTCT+AGG | + | chr3.1:81294086-81294105 | MS.gene32919:intron | 25.0% |
| !!! | TTTAGGGTTCTTTTTGTATT+AGG | + | chr3.1:81293762-81293781 | MS.gene32919:intron | 25.0% |
| AACGATAGATTCGAAAATAC+CGG | - | chr3.1:81293721-81293740 | None:intergenic | 30.0% | |
| CTTATTGCTGTGTCTAATAA+GGG | + | chr3.1:81294680-81294699 | MS.gene32919:CDS | 30.0% | |
| GTTTGATTATCGAATTCCAA+CGG | + | chr3.1:81294304-81294323 | MS.gene32919:intron | 30.0% | |
| TATTGAATGTGTTTGATGGA+CGG | + | chr3.1:81294274-81294293 | MS.gene32919:intron | 30.0% | |
| TCATTCATAATCATGGGAAA+AGG | + | chr3.1:81293614-81293633 | MS.gene32919:intron | 30.0% | |
| TCTTATTGCTGTGTCTAATA+AGG | + | chr3.1:81294679-81294698 | MS.gene32919:CDS | 30.0% | |
| TTTCAGCATACCAACATTAT+CGG | - | chr3.1:81294148-81294167 | None:intergenic | 30.0% | |
| ! | AAGAGAGATAGGATTTTTCA+CGG | - | chr3.1:81293923-81293942 | None:intergenic | 30.0% |
| AACAAAATGAGTGGTCGAAT+CGG | + | chr3.1:81294464-81294483 | MS.gene32919:CDS | 35.0% | |
| ATTCCAACGGAAAAATGTTC+TGG | + | chr3.1:81294317-81294336 | MS.gene32919:CDS | 35.0% | |
| GATACCAAGATTGAGACATT+CGG | - | chr3.1:81293493-81293512 | None:intergenic | 35.0% | |
| GATAGTCCAGTGAAAATGAA+TGG | + | chr3.1:81294344-81294363 | MS.gene32919:CDS | 35.0% | |
| GCTTATGGGTTCAATTGTAA+TGG | + | chr3.1:81294710-81294729 | MS.gene32919:CDS | 35.0% | |
| GGGTTAATGAACAAAATGAG+TGG | + | chr3.1:81294455-81294474 | MS.gene32919:CDS | 35.0% | |
| GTTTATTACGGAAGAGACAT+GGG | - | chr3.1:81293579-81293598 | None:intergenic | 35.0% | |
| TTCAGCATACCAACATTATC+GGG | - | chr3.1:81294147-81294166 | None:intergenic | 35.0% | |
| ! | ATTAAGCATCGTCTTGATGA+AGG | + | chr3.1:81294647-81294666 | MS.gene32919:CDS | 35.0% |
| ! | TTAAGCATCGTCTTGATGAA+GGG | + | chr3.1:81294648-81294667 | MS.gene32919:CDS | 35.0% |
| !! | ACAGATCCACTTTTCAATTC+TGG | + | chr3.1:81293799-81293818 | MS.gene32919:CDS | 35.0% |
| AATAAGGGTGAAGTGGCTTA+TGG | + | chr3.1:81294695-81294714 | MS.gene32919:CDS | 40.0% | |
| ACTTATGCATGTGAAGTGTG+TGG | + | chr3.1:81294512-81294531 | MS.gene32919:CDS | 40.0% | |
| ATAAGGGTGAAGTGGCTTAT+GGG | + | chr3.1:81294696-81294715 | MS.gene32919:CDS | 40.0% | |
| CTTACCGAATGTCTCAATCT+TGG | + | chr3.1:81293486-81293505 | MS.gene32919:CDS | 40.0% | |
| GGTTTATTACGGAAGAGACA+TGG | - | chr3.1:81293580-81293599 | None:intergenic | 40.0% | |
| GTTATGGAGTACAAAGGCTA+TGG | + | chr3.1:81294599-81294618 | MS.gene32919:CDS | 40.0% | |
| GTTCATGGAGGTTGGAATTT+GGG | + | chr3.1:81294763-81294782 | MS.gene32919:CDS | 40.0% | |
| TGTGTCTAATAAGGGTGAAG+TGG | + | chr3.1:81294688-81294707 | MS.gene32919:CDS | 40.0% | |
| TTCATCACTCCCGATAATGT+TGG | + | chr3.1:81294135-81294154 | MS.gene32919:CDS | 40.0% | |
| ! | AGAGATAGGATTTTTCACGG+TGG | - | chr3.1:81293920-81293939 | None:intergenic | 40.0% |
| ! | GTTCCAGAACATTTTTCCGT+TGG | - | chr3.1:81294323-81294342 | None:intergenic | 40.0% |
| !! | AGAAGAATTTGCTAGGGAAC+AGG | + | chr3.1:81293996-81294015 | MS.gene32919:CDS | 40.0% |
| AAAAGGAACGGTGGAAATGG+AGG | + | chr3.1:81293843-81293862 | MS.gene32919:CDS | 45.0% | |
| AAATTCTTCTGCACCGGAGA+AGG | - | chr3.1:81293986-81294005 | None:intergenic | 45.0% | |
| ACAAGACGAGCAAGAGAGAT+AGG | - | chr3.1:81293934-81293953 | None:intergenic | 45.0% | |
| AGAAGGCGAGGTAAGAATGA+GGG | - | chr3.1:81293969-81293988 | None:intergenic | 45.0% | |
| AGCAAAAGGAACGGTGGAAA+TGG | + | chr3.1:81293840-81293859 | MS.gene32919:CDS | 45.0% | |
| ATCGGTGATTCACCTCTCAT+AGG | + | chr3.1:81294482-81294501 | MS.gene32919:CDS | 45.0% | |
| ATGGAGGCTAGTATCATGGA+TGG | + | chr3.1:81293859-81293878 | MS.gene32919:CDS | 45.0% | |
| CCTAGCAAATTCTTCTGCAC+CGG | - | chr3.1:81293992-81294011 | None:intergenic | 45.0% | |
| CTATGGACTTCAACAAGCTG+TGG | + | chr3.1:81294616-81294635 | MS.gene32919:CDS | 45.0% | |
| CTCTCTTGCTCGTCTTGTAA+TGG | + | chr3.1:81293936-81293955 | MS.gene32919:CDS | 45.0% | |
| GAAGGTGAAGCTATCATTCG+TGG | + | chr3.1:81294551-81294570 | MS.gene32919:CDS | 45.0% | |
| GATGGTACCAAGAGAAGATG+TGG | + | chr3.1:81293877-81293896 | MS.gene32919:CDS | 45.0% | |
| GCTGCAGTTATGGAGTACAA+AGG | + | chr3.1:81294593-81294612 | MS.gene32919:CDS | 45.0% | |
| GGAAATGGAGGCTAGTATCA+TGG | + | chr3.1:81293855-81293874 | MS.gene32919:CDS | 45.0% | |
| GGTTCATGGAGGTTGGAATT+TGG | + | chr3.1:81294762-81294781 | MS.gene32919:CDS | 45.0% | |
| GTTCATTAACCCTCCAGTTG+AGG | - | chr3.1:81294447-81294466 | None:intergenic | 45.0% | |
| TAAGTTCCAGCACCTATGAG+AGG | - | chr3.1:81294497-81294516 | None:intergenic | 45.0% | |
| TACAGCACCACATCTTCTCT+TGG | - | chr3.1:81293887-81293906 | None:intergenic | 45.0% | |
| TGCTCTGACAGCAAAAGGAA+CGG | + | chr3.1:81293831-81293850 | MS.gene32919:CDS | 45.0% | |
| TGGTATGCTGAAACTCGCAA+AGG | + | chr3.1:81294155-81294174 | MS.gene32919:CDS | 45.0% | |
| ! | AACTGAGAATGGGTTCATGG+AGG | + | chr3.1:81294751-81294770 | MS.gene32919:CDS | 45.0% |
| ! | GGCAGACCATTCATTTTCAC+TGG | - | chr3.1:81294353-81294372 | None:intergenic | 45.0% |
| ! | TGAATGTGTTTGATGGACGG+TGG | + | chr3.1:81294277-81294296 | MS.gene32919:intron | 45.0% |
| ! | TGCAACTGAGAATGGGTTCA+TGG | + | chr3.1:81294748-81294767 | MS.gene32919:CDS | 45.0% |
| !! | CGGTGCAGAAGAATTTGCTA+GGG | + | chr3.1:81293990-81294009 | MS.gene32919:CDS | 45.0% |
| !!! | GTCATGTTTTTTCTAGGGCG+TGG | + | chr3.1:81294092-81294111 | MS.gene32919:intron | 45.0% |
| !!! | AATAATATAATTTTTTAATC+CGG | + | chr3.1:81293699-81293718 | MS.gene32919:intron | 5.0% |
| ACGTGAAGTGGCTGCAGTTA+TGG | + | chr3.1:81294583-81294602 | MS.gene32919:CDS | 50.0% | |
| AGGGGATGTGCAACTGAGAA+TGG | + | chr3.1:81294740-81294759 | MS.gene32919:CDS | 50.0% | |
| CATTCTTACCTCGCCTTCTC+CGG | + | chr3.1:81293970-81293989 | MS.gene32919:CDS | 50.0% | |
| CCACGGCCAGAATTGAAAAG+TGG | - | chr3.1:81293808-81293827 | None:intergenic | 50.0% | |
| CGTCTTGATGAAGGGTTTGC+TGG | + | chr3.1:81294656-81294675 | MS.gene32919:CDS | 50.0% | |
| CTTCTTCCTGACGGTGTGTT+GGG | - | chr3.1:81293455-81293474 | None:intergenic | 50.0% | |
| GAAGGCGAGGTAAGAATGAG+GGG | - | chr3.1:81293968-81293987 | None:intergenic | 50.0% | |
| GAGAAGGCGAGGTAAGAATG+AGG | - | chr3.1:81293970-81293989 | None:intergenic | 50.0% | |
| GATTCACCTCTCATAGGTGC+TGG | + | chr3.1:81294488-81294507 | MS.gene32919:CDS | 50.0% | |
| GGATCTGCTCTGACAGCAAA+AGG | + | chr3.1:81293826-81293845 | MS.gene32919:CDS | 50.0% | |
| GGGGATGTGCAACTGAGAAT+GGG | + | chr3.1:81294741-81294760 | MS.gene32919:CDS | 50.0% | |
| GTGTGTGGAGTTTCTTGCAC+TGG | + | chr3.1:81294527-81294546 | MS.gene32919:CDS | 50.0% | |
| TAATCTCCCAACACACCGTC+AGG | + | chr3.1:81293446-81293465 | MS.gene32919:CDS | 50.0% | |
| TCTGACAGCAAAAGGAACGG+TGG | + | chr3.1:81293834-81293853 | MS.gene32919:CDS | 50.0% | |
| TGACGGTGTGTTGGGAGATT+AGG | - | chr3.1:81293447-81293466 | None:intergenic | 50.0% | |
| TTGCTGTCAGAGCAGATCCA+CGG | - | chr3.1:81293825-81293844 | None:intergenic | 50.0% | |
| ! | CCGGTGCAGAAGAATTTGCT+AGG | + | chr3.1:81293989-81294008 | MS.gene32919:CDS | 50.0% |
| ! | GAGAATGGGTTCATGGAGGT+TGG | + | chr3.1:81294755-81294774 | MS.gene32919:CDS | 50.0% |
| ! | GCTGTTTCGCTTCTTCCTGA+CGG | - | chr3.1:81293464-81293483 | None:intergenic | 50.0% |
| ! | GGAGTTTCTTGCACTGGTGA+AGG | + | chr3.1:81294533-81294552 | MS.gene32919:CDS | 50.0% |
| ! | GGTTGGGCTATTGCTGTTCA+TGG | + | chr3.1:81293405-81293424 | MS.gene32919:CDS | 50.0% |
| ! | TGGGCTATTGCTGTTCATGG+CGG | + | chr3.1:81293408-81293427 | MS.gene32919:CDS | 50.0% |
| !! | CCACTTTTCAATTCTGGCCG+TGG | + | chr3.1:81293805-81293824 | MS.gene32919:CDS | 50.0% |
| AAGTTCGACGACGTCGAGTG+CGG | - | chr3.1:81293538-81293557 | None:intergenic | 55.0% | |
| CTGCTGCAACCTCAACTGGA+GGG | + | chr3.1:81294435-81294454 | MS.gene32919:CDS | 55.0% | |
| GCTTCTTCCTGACGGTGTGT+TGG | - | chr3.1:81293456-81293475 | None:intergenic | 55.0% | |
| TCCGGCGCGTAAATGCTCAT+CGG | - | chr3.1:81294374-81294393 | None:intergenic | 55.0% | |
| TGGCACTCTTGCACGTGAAG+TGG | + | chr3.1:81294571-81294590 | MS.gene32919:CDS | 55.0% | |
| ! | TGTGCTGCTGCAACCTCAAC+TGG | + | chr3.1:81294431-81294450 | MS.gene32919:CDS | 55.0% |
| !! | CGAGTGCGGAAGCATTGGAT+CGG | - | chr3.1:81293524-81293543 | None:intergenic | 55.0% |
| !! | TGTGTGGTGGTGGACAGTCA+AGG | + | chr3.1:81294404-81294423 | MS.gene32919:CDS | 55.0% |
| !! | TTTCTAGGGCGTGGAGACTG+AGG | + | chr3.1:81294101-81294120 | MS.gene32919:intron | 55.0% |
| ACCACACATCCGACGGTCTC+CGG | - | chr3.1:81294392-81294411 | None:intergenic | 60.0% | |
| ATTTACGCGCCGGAGACCGT+CGG | + | chr3.1:81294380-81294399 | MS.gene32919:CDS | 60.0% | |
| GCCGATGAGCATTTACGCGC+CGG | + | chr3.1:81294370-81294389 | MS.gene32919:CDS | 60.0% | |
| GCTGCTGCAACCTCAACTGG+AGG | + | chr3.1:81294434-81294453 | MS.gene32919:CDS | 60.0% | |
| GTCCACCACCACACATCCGA+CGG | - | chr3.1:81294399-81294418 | None:intergenic | 60.0% | |
| ! | ATTGCTGTTCATGGCGGCGC+AGG | + | chr3.1:81293414-81293433 | MS.gene32919:CDS | 60.0% |
| ! | GACGTCGAGTGCGGAAGCAT+TGG | - | chr3.1:81293529-81293548 | None:intergenic | 60.0% |
| CTTCTGCACCGGAGAAGGCG+AGG | - | chr3.1:81293981-81294000 | None:intergenic | 65.0% | |
| GACCGTCGGATGTGTGGTGG+TGG | + | chr3.1:81294394-81294413 | MS.gene32919:CDS | 65.0% | |
| GGAGACCGTCGGATGTGTGG+TGG | + | chr3.1:81294391-81294410 | MS.gene32919:CDS | 65.0% | |
| TGTTCATGGCGGCGCAGGTG+TGG | + | chr3.1:81293419-81293438 | MS.gene32919:CDS | 65.0% | |
| GCCGGAGACCGTCGGATGTG+TGG | + | chr3.1:81294388-81294407 | MS.gene32919:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81293399 | 81294790 | 81293399 | ID=MS.gene32919 |
| chr3.1 | mRNA | 81293399 | 81294790 | 81293399 | ID=MS.gene32919.t1;Parent=MS.gene32919 |
| chr3.1 | exon | 81293399 | 81293560 | 81293399 | ID=MS.gene32919.t1.exon1;Parent=MS.gene32919.t1 |
| chr3.1 | CDS | 81293399 | 81293560 | 81293399 | ID=cds.MS.gene32919.t1;Parent=MS.gene32919.t1 |
| chr3.1 | exon | 81293784 | 81294017 | 81293784 | ID=MS.gene32919.t1.exon2;Parent=MS.gene32919.t1 |
| chr3.1 | CDS | 81293784 | 81294017 | 81293784 | ID=cds.MS.gene32919.t1;Parent=MS.gene32919.t1 |
| chr3.1 | exon | 81294108 | 81294194 | 81294108 | ID=MS.gene32919.t1.exon3;Parent=MS.gene32919.t1 |
| chr3.1 | CDS | 81294108 | 81294194 | 81294108 | ID=cds.MS.gene32919.t1;Parent=MS.gene32919.t1 |
| chr3.1 | exon | 81294305 | 81294790 | 81294305 | ID=MS.gene32919.t1.exon4;Parent=MS.gene32919.t1 |
| chr3.1 | CDS | 81294305 | 81294790 | 81294305 | ID=cds.MS.gene32919.t1;Parent=MS.gene32919.t1 |
| Gene Sequence |
| Protein sequence |
