AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33412


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33412.t1 MTR_4g013260 95.197 229 10 1 1 229 266 493 6.60e-153 434
MS.gene33412.t1 MTR_4g013260 41.071 112 55 3 41 150 163 265 2.76e-16 77.4
MS.gene33412.t1 MTR_7g071120 59.504 242 79 6 3 229 258 495 8.48e-86 263
MS.gene33412.t1 MTR_7g071120 56.452 62 22 2 71 130 166 224 1.73e-15 75.1
MS.gene33412.t1 MTR_5g074400 70.073 137 36 3 8 140 354 489 7.21e-60 197
MS.gene33412.t1 MTR_5g074400 56.452 62 22 2 71 130 243 301 1.15e-15 75.9
MS.gene33412.t1 MTR_3g031220 66.901 142 41 3 3 141 297 435 9.53e-59 193
MS.gene33412.t1 MTR_3g031220 49.333 75 33 2 62 132 185 258 2.00e-16 77.8
MS.gene33412.t1 MTR_3g009470 66.187 139 38 4 9 145 436 567 4.16e-51 176
MS.gene33412.t1 MTR_3g009470 56.667 60 25 1 71 130 280 338 4.67e-15 73.9
MS.gene33412.t1 MTR_5g094430 75.000 96 24 0 51 146 210 305 7.90e-47 160
MS.gene33412.t1 MTR_5g094430 55.000 60 26 1 71 130 66 124 1.24e-13 69.7
MS.gene33412.t1 MTR_5g094430 75.000 96 24 0 51 146 232 327 9.60e-47 160
MS.gene33412.t1 MTR_5g094430 55.000 60 26 1 71 130 88 146 1.15e-13 69.7
MS.gene33412.t1 MTR_5g094430 75.789 95 23 0 52 146 345 439 3.01e-46 161
MS.gene33412.t1 MTR_5g094430 55.000 60 26 1 71 130 200 258 7.59e-14 70.5
MS.gene33412.t1 MTR_3g056100 80.233 86 17 0 48 133 235 320 7.91e-46 158
MS.gene33412.t1 MTR_3g056100 56.667 60 25 1 71 130 99 157 1.81e-14 72.0
MS.gene33412.t1 MTR_3g056100 80.233 86 17 0 48 133 248 333 8.50e-46 158
MS.gene33412.t1 MTR_3g056100 56.667 60 25 1 71 130 99 157 1.65e-14 72.4
MS.gene33412.t1 MTR_3g056100 80.233 86 17 0 48 133 379 464 1.75e-45 159
MS.gene33412.t1 MTR_3g056100 56.667 60 25 1 71 130 243 301 1.02e-14 73.2
MS.gene33412.t1 MTR_7g080020 61.765 136 36 4 26 155 451 576 1.94e-45 161
MS.gene33412.t1 MTR_7g080020 49.412 85 39 3 71 152 280 363 2.29e-15 75.1
MS.gene33412.t1 MTR_5g042920 71.717 99 28 0 47 145 296 394 1.94e-45 157
MS.gene33412.t1 MTR_5g042920 61.290 62 19 3 71 130 151 209 7.08e-16 76.3
MS.gene33412.t1 MTR_3g056100 80.233 86 17 0 48 133 392 477 2.03e-45 159
MS.gene33412.t1 MTR_3g056100 56.667 60 25 1 71 130 243 301 1.01e-14 73.2
MS.gene33412.t1 MTR_7g011820 64.545 110 28 1 52 161 391 489 5.19e-44 154
MS.gene33412.t1 MTR_7g011820 42.609 115 40 4 54 152 196 300 5.75e-16 76.6
MS.gene33412.t1 MTR_7g080000 60.305 131 40 3 6 133 373 494 7.22e-44 156
MS.gene33412.t1 MTR_7g080000 61.905 63 19 3 70 130 233 292 2.60e-15 74.7
MS.gene33412.t1 MTR_4g082580 53.030 132 56 2 24 155 237 362 8.12e-42 146
MS.gene33412.t1 MTR_4g082580 55.000 60 27 0 71 130 145 204 1.12e-13 69.7
MS.gene33412.t1 MTR_5g097490 48.872 133 55 2 31 163 215 334 2.83e-35 129
MS.gene33412.t1 MTR_5g097490 42.466 73 41 1 69 141 90 161 1.50e-11 63.5
MS.gene33412.t1 MTR_1g077780 65.823 79 27 0 52 130 43 121 9.37e-34 119
MS.gene33412.t1 MTR_7g100510 56.000 100 41 1 32 131 325 421 1.08e-33 125
MS.gene33412.t1 MTR_7g100510 44.944 89 43 3 47 130 160 247 9.58e-15 72.8
MS.gene33412.t1 MTR_3g031220 64.130 92 27 3 3 91 297 385 2.32e-30 115
MS.gene33412.t1 MTR_3g031220 49.333 75 33 2 62 132 185 258 1.10e-16 78.2
MS.gene33412.t1 MTR_8g007270 61.842 76 29 0 52 127 135 210 7.28e-30 111
MS.gene33412.t1 MTR_4g094588 64.865 74 26 0 57 130 164 237 7.83e-30 113
MS.gene33412.t1 MTR_1g015140 61.842 76 28 1 52 127 84 158 1.20e-28 106
MS.gene33412.t1 MTR_4g130900 40.136 147 77 2 46 186 334 475 6.10e-28 110
MS.gene33412.t1 MTR_3g095080 59.459 74 30 0 54 127 151 224 7.77e-28 106
MS.gene33412.t1 MTR_3g095080 59.459 74 30 0 54 127 127 200 8.51e-28 105
MS.gene33412.t1 MTR_2g033820 53.261 92 43 0 55 146 187 278 1.07e-27 108
MS.gene33412.t1 MTR_7g109800 46.218 119 54 2 52 170 126 234 1.29e-27 107
MS.gene33412.t1 MTR_5g091390 62.162 74 28 0 57 130 143 216 1.30e-27 107
MS.gene33412.t1 MTR_8g096730 55.422 83 37 0 47 129 46 128 1.93e-27 102
MS.gene33412.t1 MTR_1g086790 57.895 76 32 0 55 130 142 217 7.77e-27 105
MS.gene33412.t1 MTR_3g104750 55.263 76 34 0 52 127 85 160 1.37e-26 100
MS.gene33412.t1 MTR_8g092140 58.667 75 30 1 54 127 142 216 1.55e-26 102
MS.gene33412.t1 MTR_5g043880 56.962 79 34 0 49 127 102 180 1.63e-26 103
MS.gene33412.t1 MTR_8g092010 39.098 133 79 1 1 131 36 168 2.08e-26 100
MS.gene33412.t1 MTR_7g028415 63.235 68 25 0 62 129 84 151 4.01e-26 100
MS.gene33412.t1 MTR_7g028710 63.235 68 25 0 62 129 84 151 4.01e-26 100
MS.gene33412.t1 MTR_7g079010 60.526 76 30 0 52 127 122 197 4.50e-26 101
MS.gene33412.t1 MTR_4g132430 51.899 79 37 1 53 130 109 187 8.86e-25 100
MS.gene33412.t1 MTR_3g095040 54.667 75 34 0 57 131 104 178 1.83e-24 96.7
MS.gene33412.t1 MTR_2g023930 51.899 79 37 1 53 130 287 365 1.93e-24 101
MS.gene33412.t1 MTR_3g053330 44.681 94 51 1 54 146 234 327 2.10e-24 100
MS.gene33412.t1 MTR_7g110720 53.247 77 35 1 55 130 173 249 2.23e-24 100
MS.gene33412.t1 MTR_7g110720 50.000 84 41 1 48 130 193 276 2.31e-24 100
MS.gene33412.t1 MTR_4g094412 53.165 79 36 1 55 132 227 305 2.34e-24 100
MS.gene33412.t1 MTR_4g094412 53.165 79 36 1 55 132 218 296 2.40e-24 100
MS.gene33412.t1 MTR_4g132430 51.899 79 37 1 53 130 243 321 3.45e-24 100
MS.gene33412.t1 MTR_4g107970 51.899 79 37 1 54 131 161 239 5.01e-24 100
MS.gene33412.t1 MTR_4g107970 51.899 79 37 1 54 131 238 316 7.93e-24 99.8
MS.gene33412.t1 MTR_2g088000 51.899 79 37 1 53 130 331 409 9.48e-24 99.4
MS.gene33412.t1 MTR_4g122530 53.247 77 36 0 55 131 192 268 2.47e-23 97.4
MS.gene33412.t1 MTR_5g097500 47.126 87 46 0 56 142 215 301 5.36e-23 95.1
MS.gene33412.t1 MTR_1g009613 38.168 131 65 4 12 129 194 321 3.05e-22 93.2
MS.gene33412.t1 MTR_3g009470 61.176 85 26 3 9 91 436 515 3.40e-22 94.7
MS.gene33412.t1 MTR_3g009470 56.667 60 25 1 71 130 280 338 4.27e-15 73.9
MS.gene33412.t1 MTR_1g078260 46.667 105 54 2 25 127 200 304 4.08e-22 94.4
MS.gene33412.t1 MTR_4g094908 50.633 79 35 2 52 129 250 325 4.85e-22 92.8
MS.gene33412.t1 MTR_2g105060 41.525 118 53 4 48 160 144 250 5.98e-22 92.0
MS.gene33412.t1 MTR_2g105060 41.880 117 52 4 49 160 70 175 6.59e-22 90.5
MS.gene33412.t1 MTR_2g045360 45.361 97 45 3 50 141 193 286 9.78e-22 92.8
MS.gene33412.t1 MTR_4g049790 49.367 79 39 1 53 130 294 372 9.97e-22 93.6
MS.gene33412.t1 MTR_7g009730 50.649 77 37 1 54 129 202 278 1.46e-21 92.8
MS.gene33412.t1 MTR_5g016610 53.333 75 34 1 58 131 186 260 2.24e-21 89.7
MS.gene33412.t1 MTR_6g086555 52.632 76 35 1 57 131 192 267 3.16e-21 91.3
MS.gene33412.t1 MTR_4g049760 40.708 113 53 2 58 156 277 389 1.62e-20 89.7
MS.gene33412.t1 MTR_3g106060 36.567 134 67 3 12 127 62 195 2.87e-19 84.7
MS.gene33412.t1 MTR_4g127040 49.351 77 35 2 52 127 229 302 3.71e-19 84.7
MS.gene33412.t1 MTR_4g007060 41.748 103 45 3 69 162 126 222 3.91e-19 84.0
MS.gene33412.t1 MTR_1g070455 49.351 77 35 2 52 127 277 350 4.46e-19 84.7
MS.gene33412.t1 MTR_4g007060 41.748 103 45 3 69 162 160 256 5.17e-19 84.3
MS.gene33412.t1 MTR_7g062220 59.649 57 23 0 71 127 124 180 1.01e-18 83.6
MS.gene33412.t1 MTR_1g013760 41.304 92 48 3 42 127 106 197 8.49e-18 80.5
MS.gene33412.t1 MTR_1g013790 41.758 91 52 1 59 148 89 179 1.13e-17 79.7
MS.gene33412.t1 MTR_4g047580 34.746 118 63 2 53 156 263 380 2.35e-16 77.8
MS.gene33412.t1 MTR_1g099600 35.577 104 65 2 52 154 167 269 2.78e-16 76.6
MS.gene33412.t1 MTR_2g032030 42.045 88 49 2 64 150 261 347 3.20e-16 77.4
MS.gene33412.t1 MTR_3g108960 43.590 78 43 1 52 128 295 372 4.49e-16 76.6
MS.gene33412.t1 MTR_7g109600 50.000 62 30 1 72 132 54 115 4.75e-16 75.5
MS.gene33412.t1 MTR_8g087000 44.444 72 39 1 72 142 78 149 5.01e-16 75.1
MS.gene33412.t1 MTR_2g032030 42.045 88 49 2 64 150 261 347 5.07e-16 76.6
MS.gene33412.t1 MTR_8g087000 44.444 72 39 1 72 142 77 148 5.41e-16 74.7
MS.gene33412.t1 MTR_2g083870 47.826 69 35 1 72 139 81 149 1.51e-15 73.9
MS.gene33412.t1 MTR_8g028565 42.391 92 41 3 72 162 156 236 2.28e-15 74.3
MS.gene33412.t1 MTR_8g098945 49.231 65 32 1 70 133 128 192 2.69e-15 73.2
MS.gene33412.t1 MTR_0117s0040 45.455 77 39 2 52 127 57 131 2.78e-15 72.8
MS.gene33412.t1 MTR_2g024350 48.485 66 33 1 66 130 3 68 2.98e-15 72.4
MS.gene33412.t1 MTR_2g016770 43.902 82 38 2 72 152 36 110 6.38e-15 71.2
MS.gene33412.t1 MTR_2g016770 43.902 82 38 2 72 152 28 102 9.80e-15 70.9
MS.gene33412.t1 MTR_2g024380 48.485 66 33 1 66 130 246 311 1.15e-14 72.8
MS.gene33412.t1 MTR_1g077760 67.500 40 13 0 52 91 95 134 2.42e-14 67.8
MS.gene33412.t1 MTR_7g079040 51.667 60 28 1 72 130 155 214 3.25e-14 70.9
MS.gene33412.t1 MTR_5g074200 53.333 60 27 1 71 130 220 278 7.39e-14 69.7
MS.gene33412.t1 MTR_8g067635 41.667 84 39 2 69 151 347 421 1.97e-13 69.3
MS.gene33412.t1 MTR_8g069935 40.845 71 38 2 71 140 331 398 2.47e-13 68.9
MS.gene33412.t1 MTR_5g044695 52.174 46 22 0 53 98 59 104 3.39e-13 64.3
MS.gene33412.t1 MTR_8g067650 41.667 84 39 2 69 151 337 411 4.43e-13 68.2
MS.gene33412.t1 MTR_3g090860 40.789 76 40 2 70 142 132 205 2.33e-12 65.5
MS.gene33412.t1 MTR_6g053200 39.437 71 42 1 71 140 330 400 5.03e-12 65.1
MS.gene33412.t1 MTR_6g038890 52.174 46 22 0 53 98 170 215 7.01e-12 63.2
MS.gene33412.t1 MTR_3g095080 60.000 40 16 0 54 93 151 190 1.26e-11 62.0
MS.gene33412.t1 MTR_8g099350 48.276 58 27 1 71 125 132 189 1.55e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33412.t1 AT2G38470 56.250 192 60 7 6 195 299 468 1.00e-60 199
MS.gene33412.t1 AT2G38470 54.839 62 23 2 71 130 184 242 3.28e-15 74.3
MS.gene33412.t1 AT5G56270 75.728 103 22 1 31 133 450 549 7.98e-48 167
MS.gene33412.t1 AT5G56270 55.738 61 24 2 71 130 273 331 4.78e-14 71.2
MS.gene33412.t1 AT5G07100 68.966 116 20 3 21 133 101 203 3.46e-47 155
MS.gene33412.t1 AT5G07100 40.217 92 44 1 59 139 1 92 5.56e-15 71.6
MS.gene33412.t1 AT5G07100 68.966 116 20 3 21 133 101 203 3.46e-47 155
MS.gene33412.t1 AT5G07100 40.217 92 44 1 59 139 1 92 5.56e-15 71.6
MS.gene33412.t1 AT5G07100 68.966 116 20 3 21 133 101 203 3.46e-47 155
MS.gene33412.t1 AT5G07100 40.217 92 44 1 59 139 1 92 5.56e-15 71.6
MS.gene33412.t1 AT5G07100 68.966 116 20 3 21 133 101 203 3.46e-47 155
MS.gene33412.t1 AT5G07100 40.217 92 44 1 59 139 1 92 5.56e-15 71.6
MS.gene33412.t1 AT5G07100 68.966 116 20 3 21 133 194 296 5.18e-47 157
MS.gene33412.t1 AT5G07100 40.426 94 45 1 57 139 92 185 6.98e-16 75.5
MS.gene33412.t1 AT4G26640 63.333 120 38 1 24 143 164 277 1.99e-46 158
MS.gene33412.t1 AT4G26640 54.839 62 27 1 69 130 33 93 2.96e-14 71.2
MS.gene33412.t1 AT4G26640 63.333 120 38 1 24 143 164 277 1.99e-46 158
MS.gene33412.t1 AT4G26640 54.839 62 27 1 69 130 33 93 2.96e-14 71.2
MS.gene33412.t1 AT4G26640 63.333 120 38 1 24 143 164 277 1.99e-46 158
MS.gene33412.t1 AT4G26640 54.839 62 27 1 69 130 33 93 2.96e-14 71.2
MS.gene33412.t1 AT4G26640 63.333 120 38 1 24 143 164 277 1.99e-46 158
MS.gene33412.t1 AT4G26640 54.839 62 27 1 69 130 33 93 2.96e-14 71.2
MS.gene33412.t1 AT4G26640 63.333 120 38 1 24 143 300 413 5.17e-46 160
MS.gene33412.t1 AT4G26640 54.839 62 27 1 69 130 169 229 2.07e-14 72.0
MS.gene33412.t1 AT4G26640 63.333 120 38 1 24 143 268 381 5.52e-46 159
MS.gene33412.t1 AT4G26640 54.839 62 27 1 69 130 137 197 2.50e-14 72.0
MS.gene33412.t1 AT4G26640 63.333 120 38 1 24 143 340 453 8.14e-46 160
MS.gene33412.t1 AT4G26640 54.839 62 27 1 69 130 209 269 1.87e-14 72.4
MS.gene33412.t1 AT1G13960 68.224 107 24 1 34 130 209 315 2.80e-45 154
MS.gene33412.t1 AT1G13960 60.000 60 23 1 71 130 76 134 2.40e-16 77.4
MS.gene33412.t1 AT1G13960 68.224 107 24 1 34 130 362 468 6.24e-45 157
MS.gene33412.t1 AT1G13960 60.000 60 23 1 71 130 229 287 8.06e-17 79.3
MS.gene33412.t1 AT2G03340 66.055 109 36 1 52 160 396 503 8.67e-44 154
MS.gene33412.t1 AT2G03340 49.425 87 38 2 71 152 250 335 4.44e-18 82.8
MS.gene33412.t1 AT3G01080 82.278 79 14 0 52 130 325 403 1.55e-42 149
MS.gene33412.t1 AT3G01080 53.968 63 28 1 71 133 205 266 2.38e-14 72.0
MS.gene33412.t1 AT3G01080 82.278 79 14 0 52 130 287 365 1.90e-42 149
MS.gene33412.t1 AT3G01080 53.968 63 28 1 71 133 167 228 2.62e-14 71.6
MS.gene33412.t1 AT4G26440 52.841 176 69 5 9 176 312 481 2.59e-42 150
MS.gene33412.t1 AT4G26440 53.226 62 24 2 71 130 178 236 2.35e-13 68.9
MS.gene33412.t1 AT2G30250 66.327 98 31 1 33 130 292 387 6.60e-40 141
MS.gene33412.t1 AT2G30250 45.055 91 42 3 40 130 142 224 4.83e-14 70.9
MS.gene33412.t1 AT2G04880 62.353 85 32 0 52 136 264 348 2.05e-33 125
MS.gene33412.t1 AT2G04880 46.269 67 35 1 69 135 109 174 4.68e-14 70.9
MS.gene33412.t1 AT2G04880 62.353 85 32 0 52 136 288 372 3.88e-33 125
MS.gene33412.t1 AT2G04880 46.269 67 35 1 69 135 109 174 5.14e-14 70.9
MS.gene33412.t1 AT2G44745 47.748 111 57 1 17 127 92 201 2.97e-30 112
MS.gene33412.t1 AT4G18170 63.158 76 28 0 55 130 156 231 4.35e-30 114
MS.gene33412.t1 AT1G29860 64.474 76 27 0 55 130 120 195 1.61e-29 111
MS.gene33412.t1 AT1G55600 60.494 81 32 0 50 130 286 366 9.36e-29 112
MS.gene33412.t1 AT4G30935 51.485 101 45 1 33 133 297 393 1.03e-28 112
MS.gene33412.t1 AT4G39410 61.842 76 29 0 52 127 204 279 1.41e-28 109
MS.gene33412.t1 AT5G46350 59.740 77 31 0 57 133 169 245 1.46e-28 110
MS.gene33412.t1 AT5G26170 60.000 70 28 0 58 127 100 169 1.49e-27 103
MS.gene33412.t1 AT5G49520 59.740 77 31 0 55 131 205 281 6.13e-27 107
MS.gene33412.t1 AT2G47260 57.143 84 35 1 55 137 158 241 6.98e-27 105
MS.gene33412.t1 AT5G13080 49.000 100 43 1 38 129 26 125 1.02e-26 100
MS.gene33412.t1 AT3G01970 62.500 72 27 0 58 129 52 123 1.06e-26 100
MS.gene33412.t1 AT5G41570 57.895 76 32 0 52 127 79 154 1.42e-26 101
MS.gene33412.t1 AT1G69310 57.895 76 32 0 52 127 128 203 1.63e-26 103
MS.gene33412.t1 AT1G69310 57.895 76 32 0 52 127 128 203 1.63e-26 103
MS.gene33412.t1 AT1G69310 57.895 76 32 0 52 127 128 203 1.63e-26 103
MS.gene33412.t1 AT2G37260 57.143 91 39 0 60 150 258 348 1.71e-26 105
MS.gene33412.t1 AT2G37260 54.286 70 28 2 72 138 86 154 1.30e-14 72.4
MS.gene33412.t1 AT2G37260 57.143 91 39 0 60 150 256 346 1.74e-26 105
MS.gene33412.t1 AT2G37260 54.286 70 28 2 72 138 84 152 1.28e-14 72.4
MS.gene33412.t1 AT1G64000 55.696 79 35 0 49 127 92 170 2.14e-26 101
MS.gene33412.t1 AT2G37260 57.143 91 39 0 60 150 338 428 4.72e-26 105
MS.gene33412.t1 AT2G37260 54.286 70 28 2 72 138 166 234 1.54e-14 72.4
MS.gene33412.t1 AT4G04450 54.430 79 35 1 53 130 180 258 1.63e-25 103
MS.gene33412.t1 AT5G64810 59.155 71 29 0 58 128 97 167 2.16e-25 98.6
MS.gene33412.t1 AT4G04450 54.430 79 35 1 53 130 274 352 5.62e-25 102
MS.gene33412.t1 AT5G15130 53.165 79 36 1 54 131 168 246 9.75e-25 102
MS.gene33412.t1 AT1G62300 53.165 79 36 1 53 130 294 372 1.11e-24 102
MS.gene33412.t1 AT5G15130 53.165 79 36 1 54 131 210 288 1.39e-24 101
MS.gene33412.t1 AT2G46130 56.579 76 33 0 52 127 11 86 1.41e-24 94.0
MS.gene33412.t1 AT1G68150 53.165 79 36 1 55 132 219 297 2.08e-24 99.8
MS.gene33412.t1 AT4G22070 53.165 79 36 1 53 130 279 357 2.20e-24 100
MS.gene33412.t1 AT4G22070 53.165 79 36 1 53 130 279 357 2.20e-24 100
MS.gene33412.t1 AT4G22070 53.165 79 36 1 53 130 279 357 2.20e-24 100
MS.gene33412.t1 AT4G22070 53.165 79 36 1 53 130 279 357 2.20e-24 100
MS.gene33412.t1 AT1G18860 53.846 78 35 1 54 130 222 299 4.14e-24 100
MS.gene33412.t1 AT3G62340 57.143 77 33 0 55 131 102 178 2.10e-23 95.5
MS.gene33412.t1 AT4G31550 50.538 93 41 3 52 142 230 319 1.64e-22 94.0
MS.gene33412.t1 AT4G31550 50.538 93 41 3 52 142 229 318 1.69e-22 94.0
MS.gene33412.t1 AT4G01720 50.649 77 37 1 55 130 223 299 9.03e-22 93.6
MS.gene33412.t1 AT2G23320 49.367 79 36 2 52 129 224 299 1.06e-21 91.7
MS.gene33412.t1 AT1G69310 53.947 76 31 1 52 127 128 199 1.77e-21 90.5
MS.gene33412.t1 AT4G24240 53.333 75 34 1 58 131 268 342 2.37e-21 91.3
MS.gene33412.t1 AT2G24570 54.545 77 31 2 52 127 227 300 7.08e-21 89.4
MS.gene33412.t1 AT1G80840 38.983 118 56 3 69 170 144 261 1.60e-20 88.2
MS.gene33412.t1 AT5G28650 50.649 77 34 2 52 127 246 319 2.12e-20 88.2
MS.gene33412.t1 AT3G04670 50.649 77 34 2 52 127 246 319 5.64e-20 87.0
MS.gene33412.t1 AT2G21900 50.000 74 34 1 60 130 95 168 6.34e-20 84.7
MS.gene33412.t1 AT2G46130 52.632 76 32 1 52 127 11 82 1.31e-19 81.3
MS.gene33412.t1 AT2G30590 50.649 77 37 1 52 127 294 370 2.80e-19 85.5
MS.gene33412.t1 AT4G23550 42.391 92 52 1 60 150 129 220 5.21e-19 84.3
MS.gene33412.t1 AT1G69810 35.659 129 67 3 19 131 79 207 1.03e-18 83.6
MS.gene33412.t1 AT1G69810 35.659 129 67 3 19 131 137 265 1.24e-18 84.0
MS.gene33412.t1 AT2G25000 48.387 62 31 1 70 130 102 163 1.41e-17 79.0
MS.gene33412.t1 AT2G25000 48.387 62 31 1 70 130 102 163 1.41e-17 79.0
MS.gene33412.t1 AT2G25000 48.387 62 31 1 70 130 124 185 2.44e-17 78.6
MS.gene33412.t1 AT4G31800 43.836 73 40 1 59 130 99 171 2.50e-17 78.6
MS.gene33412.t1 AT2G25000 48.387 62 31 1 70 130 145 206 3.49e-17 78.6
MS.gene33412.t1 AT4G31800 43.836 73 40 1 59 130 164 236 3.67e-17 79.0
MS.gene33412.t1 AT4G12020 53.086 81 36 1 11 91 583 661 4.65e-17 80.1
MS.gene33412.t1 AT4G12020 49.180 61 30 1 70 130 467 526 3.69e-12 65.9
MS.gene33412.t1 AT4G12020 53.086 81 36 1 11 91 583 661 4.65e-17 80.1
MS.gene33412.t1 AT4G12020 49.180 61 30 1 70 130 467 526 3.69e-12 65.9
MS.gene33412.t1 AT4G12020 53.086 81 36 1 11 91 583 661 4.72e-17 80.1
MS.gene33412.t1 AT4G12020 49.180 61 30 1 70 130 467 526 3.88e-12 65.9
MS.gene33412.t1 AT4G12020 53.086 81 36 1 11 91 583 661 4.72e-17 80.1
MS.gene33412.t1 AT4G12020 49.180 61 30 1 70 130 467 526 3.51e-12 65.9
MS.gene33412.t1 AT4G12020 53.086 81 36 1 11 91 583 661 5.07e-17 80.1
MS.gene33412.t1 AT4G12020 49.180 61 30 1 70 130 467 526 3.69e-12 65.9
MS.gene33412.t1 AT4G12020 53.086 81 36 1 11 91 583 661 5.07e-17 80.1
MS.gene33412.t1 AT4G12020 49.180 61 30 1 70 130 467 526 3.69e-12 65.9
MS.gene33412.t1 AT4G12020 53.086 81 36 1 11 91 583 661 5.34e-17 80.1
MS.gene33412.t1 AT4G12020 49.180 61 30 1 70 130 467 526 3.82e-12 65.9
MS.gene33412.t1 AT4G12020 53.086 81 36 1 11 91 583 661 5.63e-17 80.1
MS.gene33412.t1 AT4G12020 49.180 61 30 1 70 130 467 526 4.06e-12 65.9
MS.gene33412.t1 AT4G12020 53.086 81 36 1 11 91 583 661 5.77e-17 79.7
MS.gene33412.t1 AT4G12020 49.180 61 30 1 70 130 467 526 5.27e-12 65.5
MS.gene33412.t1 AT4G12020 53.086 81 36 1 11 91 583 661 5.87e-17 80.1
MS.gene33412.t1 AT4G12020 49.180 61 30 1 70 130 467 526 4.00e-12 65.9
MS.gene33412.t1 AT4G12020 53.086 81 36 1 11 91 516 594 6.08e-17 79.7
MS.gene33412.t1 AT4G12020 49.180 61 30 1 70 130 400 459 4.18e-12 65.9
MS.gene33412.t1 AT5G43290 55.932 59 26 0 69 127 112 170 1.12e-16 77.4
MS.gene33412.t1 AT5G52830 35.294 119 66 3 52 169 147 255 2.44e-16 77.0
MS.gene33412.t1 AT1G29280 50.820 61 29 1 72 131 75 135 2.54e-16 75.9
MS.gene33412.t1 AT4G01250 52.381 63 29 1 72 133 129 191 2.72e-16 76.6
MS.gene33412.t1 AT1G30650 40.741 81 47 1 54 133 200 280 2.62e-15 74.7
MS.gene33412.t1 AT2G34830 40.741 81 47 1 54 133 198 278 3.01e-15 74.3
MS.gene33412.t1 AT2G34830 40.741 81 47 1 54 133 207 287 3.19e-15 74.3
MS.gene33412.t1 AT3G01080 53.968 63 28 1 71 133 205 266 1.02e-14 72.4
MS.gene33412.t1 AT3G58710 41.667 84 42 2 62 144 62 139 2.38e-14 70.9
MS.gene33412.t1 AT3G58710 41.667 84 42 2 62 144 61 138 2.45e-14 70.9
MS.gene33412.t1 AT5G45050 44.186 86 34 3 55 133 1137 1215 1.75e-13 69.7
MS.gene33412.t1 AT5G45050 44.186 86 34 3 55 133 1165 1243 1.75e-13 69.7
MS.gene33412.t1 AT5G45050 44.186 86 34 3 55 133 1026 1104 1.83e-13 69.7
MS.gene33412.t1 AT5G24110 31.206 141 90 4 58 192 99 238 1.02e-11 63.5
MS.gene33412.t1 AT2G46400 37.662 77 45 1 52 125 85 161 4.95e-11 61.6

Find 35 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGCTTCTGATCTTTCTT+TGG 0.174215 4.2:-87318586 MS.gene33412:CDS
TGGAGGAGATTATGATGATT+TGG 0.259847 4.2:-87318523 MS.gene33412:CDS
GGAGGAGATTATGATGATTT+GGG 0.288731 4.2:-87318522 MS.gene33412:CDS
ATGGCTTCTGATCTTTCTTT+GGG 0.307243 4.2:-87318585 MS.gene33412:CDS
TTATTTGCATACCTTGGGTT+TGG 0.317158 4.2:+87318104 None:intergenic
GGATATAGGTGGAGGAAATA+TGG 0.321679 4.2:-87318149 MS.gene33412:CDS
TATGGACAGAAAGTAGTTAA+AGG 0.332389 4.2:-87318131 MS.gene33412:CDS
GTCACTGCTGAAGGCCTTAT+AGG 0.353697 4.2:+87317659 None:intergenic
TTCTGATCTTTCTTTGGGAG+AGG 0.403118 4.2:-87318580 MS.gene33412:CDS
AGCCGAGTATTGTTCCGAAT+TGG 0.406866 4.2:+87317499 None:intergenic
ATATTCTTGATGATGGATAT+AGG 0.416334 4.2:-87318163 MS.gene33412:CDS
AATTGGTTCAAATACCAATT+CGG 0.428619 4.2:-87317513 MS.gene33412:CDS
CATGTAATGTTACACCTATA+AGG 0.432770 4.2:-87317673 MS.gene33412:CDS
TTATGATGATTTGGGAATAG+AGG 0.442880 4.2:-87318514 MS.gene33412:CDS
GCAGTAATCACAACATATGA+AGG 0.450008 4.2:-87317776 MS.gene33412:CDS
GAAATTGATATTCTTGATGA+TGG 0.452886 4.2:-87318170 MS.gene33412:CDS
AGAAGGGTGTAGAACTGTTA+AGG 0.478856 4.2:-87318222 MS.gene33412:CDS
GTACTGATCTTACCATCTCT+TGG 0.498802 4.2:+87318491 None:intergenic
GTAGTTTGAACCACAACTCT+AGG 0.508298 4.2:+87318197 None:intergenic
TACCAATTCGGAACAATACT+CGG 0.514905 4.2:-87317501 MS.gene33412:CDS
AGCTATTCTTATTCCACAGA+AGG 0.516161 4.2:-87318239 MS.gene33412:CDS
CTCTTCCTAGAGGTACATCA+TGG 0.532042 4.2:+87317744 None:intergenic
GAATAGTTAGTCACTGCTGA+AGG 0.564525 4.2:+87317650 None:intergenic
CATGATGTACCTCTAGGAAG+AGG 0.569832 4.2:-87317743 MS.gene33412:CDS
TTGATGATGGATATAGGTGG+AGG 0.585484 4.2:-87318157 MS.gene33412:CDS
AACAGTTCTACACCCTTCTG+TGG 0.594037 4.2:+87318226 None:intergenic
TACTACAAATGTGTAATCCA+AGG 0.596332 4.2:-87317845 MS.gene33412:CDS
CATAACCATGATGTACCTCT+AGG 0.598674 4.2:-87317749 MS.gene33412:CDS
GCTATTCTTATTCCACAGAA+GGG 0.600897 4.2:-87318238 MS.gene33412:CDS
CAGTAATCACAACATATGAA+GGG 0.624707 4.2:-87317775 MS.gene33412:CDS
TTAAAGGAAATCCAAACCCA+AGG 0.636841 4.2:-87318115 MS.gene33412:intron
TGTTAAGGAACCTAGAGTTG+TGG 0.637272 4.2:-87318207 MS.gene33412:CDS
CTTGAAATTCCTCTTCCTAG+AGG 0.637467 4.2:+87317734 None:intergenic
TGGGAATAGAGGCCAAGAGA+TGG 0.640179 4.2:-87318503 MS.gene33412:intron
TTCTTGATGATGGATATAGG+TGG 0.671599 4.2:-87318160 MS.gene33412:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTCATTCAATAAA+TGG - chr4.2:87317605-87317624 MS.gene33412:CDS 10.0%
!! CTAAATGATATAATATACTA+CGG - chr4.2:87318013-87318032 MS.gene33412:intron 15.0%
!! TATCTATAACTATAACTAAA+TGG + chr4.2:87317986-87318005 None:intergenic 15.0%
!! GAACAAGTTATTATCATATA+GGG + chr4.2:87318152-87318171 None:intergenic 20.0%
!! TATGCAAATAATACAACTTA+TGG - chr4.2:87317947-87317966 MS.gene33412:intron 20.0%
!! TGAACAAGTTATTATCATAT+AGG + chr4.2:87318153-87318172 None:intergenic 20.0%
!! TTTATGATTCTCATTATTGT+AGG - chr4.2:87317756-87317775 MS.gene33412:CDS 20.0%
!!! AAACGACTATTATTTTTAGA+CGG - chr4.2:87318085-87318104 MS.gene33412:intron 20.0%
! AAGTTATTATCATATAGGGT+TGG + chr4.2:87318148-87318167 None:intergenic 25.0%
! CATTCAATAAATGGTATATG+TGG - chr4.2:87317614-87317633 MS.gene33412:CDS 25.0%
! GAAATCAACCTCAAAAATAT+TGG + chr4.2:87317725-87317744 None:intergenic 25.0%
! GAAATTGATATTCTTGATGA+TGG - chr4.2:87317869-87317888 MS.gene33412:intron 25.0%
! TTGTATTATTTGCATACCTT+GGG + chr4.2:87317943-87317962 None:intergenic 25.0%
!! AATTGGTTCAAATACCAATT+CGG - chr4.2:87318526-87318545 MS.gene33412:CDS 25.0%
!!! ATATTCTTGATGATGGATAT+AGG - chr4.2:87317876-87317895 MS.gene33412:intron 25.0%
!!! ATGAAGTACCAATATTTTTG+AGG - chr4.2:87317714-87317733 MS.gene33412:CDS 25.0%
CAGTAATCACAACATATGAA+GGG - chr4.2:87318264-87318283 MS.gene33412:CDS 30.0%
CATGTAATGTTACACCTATA+AGG - chr4.2:87318366-87318385 MS.gene33412:intron 30.0%
GATTCTCATTATTGTAGGAA+AGG - chr4.2:87317761-87317780 MS.gene33412:CDS 30.0%
GTTGTATTATTTGCATACCT+TGG + chr4.2:87317944-87317963 None:intergenic 30.0%
TACTACAAATGTGTAATCCA+AGG - chr4.2:87318194-87318213 MS.gene33412:CDS 30.0%
TATGGACAGAAAGTAGTTAA+AGG - chr4.2:87317908-87317927 MS.gene33412:intron 30.0%
! TTATGATGATTTGGGAATAG+AGG - chr4.2:87317525-87317544 MS.gene33412:CDS 30.0%
!! GATGAATTCTAGAAGCTTTT+TGG - chr4.2:87318496-87318515 MS.gene33412:intron 30.0%
!! GTTCAAAATATTGTTTCTGC+AGG - chr4.2:87318168-87318187 MS.gene33412:CDS 30.0%
!!! ACATCACAAACTAGTTTTTC+TGG - chr4.2:87317496-87317515 MS.gene33412:CDS 30.0%
!!! GACTATTATTTTTAGACGGA+AGG - chr4.2:87318089-87318108 MS.gene33412:intron 30.0%
AGCTATTCTTATTCCACAGA+AGG - chr4.2:87317800-87317819 MS.gene33412:CDS 35.0%
ATGGCTTCTGATCTTTCTTT+GGG - chr4.2:87317454-87317473 MS.gene33412:CDS 35.0%
GCACAAAATAATACACCCTT+CGG + chr4.2:87317677-87317696 None:intergenic 35.0%
GCAGTAATCACAACATATGA+AGG - chr4.2:87318263-87318282 MS.gene33412:CDS 35.0%
GCTATTCTTATTCCACAGAA+GGG - chr4.2:87317801-87317820 MS.gene33412:CDS 35.0%
GGAGGAGATTATGATGATTT+GGG - chr4.2:87317517-87317536 MS.gene33412:CDS 35.0%
GGTCACTATTATAAACCAGA+GGG + chr4.2:87317656-87317675 None:intergenic 35.0%
GGTTTATAATAGTGACCGAA+GGG - chr4.2:87317659-87317678 MS.gene33412:CDS 35.0%
TACCAATTCGGAACAATACT+CGG - chr4.2:87318538-87318557 MS.gene33412:CDS 35.0%
TGCTTATAATAGTGACCAGA+GGG + chr4.2:87317575-87317594 None:intergenic 35.0%
TGGAGGAGATTATGATGATT+TGG - chr4.2:87317516-87317535 MS.gene33412:CDS 35.0%
TGGTTTATAATAGTGACCGA+AGG - chr4.2:87317658-87317677 MS.gene33412:CDS 35.0%
TTAAAGGAAATCCAAACCCA+AGG - chr4.2:87317924-87317943 MS.gene33412:intron 35.0%
TTATTTGCATACCTTGGGTT+TGG + chr4.2:87317938-87317957 None:intergenic 35.0%
TTGCTTATAATAGTGACCAG+AGG + chr4.2:87317576-87317595 None:intergenic 35.0%
! AGCTTTTTGGACAGATCAAT+TGG - chr4.2:87318509-87318528 MS.gene33412:CDS 35.0%
!! TTCTTGATGATGGATATAGG+TGG - chr4.2:87317879-87317898 MS.gene33412:intron 35.0%
!!! TCACAAACTAGTTTTTCTGG+AGG - chr4.2:87317499-87317518 MS.gene33412:CDS 35.0%
CACTATTATAAACCAGAGGG+TGG + chr4.2:87317653-87317672 None:intergenic 40.0%
CATAACCATGATGTACCTCT+AGG - chr4.2:87318290-87318309 MS.gene33412:intron 40.0%
CGGTCACTATTATAAACCAG+AGG + chr4.2:87317657-87317676 None:intergenic 40.0%
CTTGAAATTCCTCTTCCTAG+AGG + chr4.2:87318308-87318327 None:intergenic 40.0%
GAATAGTTAGTCACTGCTGA+AGG + chr4.2:87318392-87318411 None:intergenic 40.0%
GGATATAGGTGGAGGAAATA+TGG - chr4.2:87317890-87317909 MS.gene33412:intron 40.0%
GTAGTTTGAACCACAACTCT+AGG + chr4.2:87317845-87317864 None:intergenic 40.0%
TGTTAAGGAACCTAGAGTTG+TGG - chr4.2:87317832-87317851 MS.gene33412:CDS 40.0%
TTATAATGTAGACCACCCTC+TGG - chr4.2:87317638-87317657 MS.gene33412:CDS 40.0%
! AGAAGGGTGTAGAACTGTTA+AGG - chr4.2:87317817-87317836 MS.gene33412:CDS 40.0%
! GTACTGATCTTACCATCTCT+TGG + chr4.2:87317551-87317570 None:intergenic 40.0%
! GTTTTCTCACAGTACAACCT+TGG + chr4.2:87318214-87318233 None:intergenic 40.0%
! TTCTGATCTTTCTTTGGGAG+AGG - chr4.2:87317459-87317478 MS.gene33412:CDS 40.0%
!! ACGGAAGGAGTACTTAACTT+CGG - chr4.2:87318104-87318123 MS.gene33412:intron 40.0%
!! TTGATGATGGATATAGGTGG+AGG - chr4.2:87317882-87317901 MS.gene33412:intron 40.0%
AACAGTTCTACACCCTTCTG+TGG + chr4.2:87317816-87317835 None:intergenic 45.0%
! AGCCGAGTATTGTTCCGAAT+TGG + chr4.2:87318543-87318562 None:intergenic 45.0%
! CATGATGTACCTCTAGGAAG+AGG - chr4.2:87318296-87318315 MS.gene33412:intron 45.0%
! CTCTTCCTAGAGGTACATCA+TGG + chr4.2:87318298-87318317 None:intergenic 45.0%
TGGGAATAGAGGCCAAGAGA+TGG - chr4.2:87317536-87317555 MS.gene33412:CDS 50.0%
! GTCACTGCTGAAGGCCTTAT+AGG + chr4.2:87318383-87318402 None:intergenic 50.0%
GGTAAGATCAGTACGCCCTC+TGG - chr4.2:87317557-87317576 MS.gene33412:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 87317454 87318607 87317454 ID=MS.gene33412
chr4.2 mRNA 87317454 87318607 87317454 ID=MS.gene33412.t1;Parent=MS.gene33412
chr4.2 exon 87318504 87318607 87318504 ID=MS.gene33412.t1.exon1;Parent=MS.gene33412.t1
chr4.2 CDS 87318504 87318607 87318504 ID=cds.MS.gene33412.t1;Parent=MS.gene33412.t1
chr4.2 exon 87318116 87318283 87318116 ID=MS.gene33412.t1.exon2;Parent=MS.gene33412.t1
chr4.2 CDS 87318116 87318283 87318116 ID=cds.MS.gene33412.t1;Parent=MS.gene33412.t1
chr4.2 exon 87317454 87317871 87317454 ID=MS.gene33412.t1.exon3;Parent=MS.gene33412.t1
chr4.2 CDS 87317454 87317871 87317454 ID=cds.MS.gene33412.t1;Parent=MS.gene33412.t1
Gene Sequence

>MS.gene33412

ATGGCTTCTGATCTTTCTTTGGGAGAGGATGATTTTGATCAAACATCACAAACTAGTTTTTCTGGAGGAGATTATGATGATTTGGGAATAGAGGCCAAGAGATGGTAAGATCAGTACGCCCTCTGGTCACTATTATAAGCAAATATTTATATTTTATATTCATTCAATAAATGGTATATGTGGTTTATAATGTAGACCACCCTCTGGTTTATAATAGTGACCGAAGGGTGTATTATTTTGTGCTTGCAATGCTGATTTGCATGAAGTACCAATATTTTTGAGGTTGATTTCAATATCACTAATTTATGATTCTCATTATTGTAGGAAAGGAGAGAATGAAAATGATAGCTATTCTTATTCCACAGAAGGGTGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATTCTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAATCCAAACCCAAGGTATGCAAATAATACAACTTATGGAAACAAACAAATGCCATTTAGTTATAGTTATAGATAATTGCTTCTAAATGATATAATATACTACGGAACAAATCAACATAATTAATCATTTTCTTAAAAATCGTGCACAAATTTTAAACGACTATTATTTTTAGACGGAAGGAGTACTTAACTTCGGAGTTCTTGATATTTGTTACCAACCCTATATGATAATAACTTGTTCAAAATATTGTTTCTGCAGGAGCTACTACAAATGTGTAATCCAAGGTTGTACTGTGAGAAAACATGTTGAGAGAGCTTCACATGATATTAAAGCAGTAATCACAACATATGAAGGGAAACATAACCATGATGTACCTCTAGGAAGAGGAATTTCAAGCAGTAGCATAAACAACAGAACTTCTCTTAACAACAATACATGTAATGTTACACCTATAAGGCCTTCAGCAGTGACTAACTATTCTAGCTTAGCAAATTTTACAAATTCACTTCATGATTCAAAGCTATCAAATTCTGAAAATCAAGAACATTTTCAGCTTGACATGTTGATGAATTCTAGAAGCTTTTTGGACAGATCAATTGGTTCAAATACCAATTCGGAACAATACTCGGCTAAAGATGACTCATTCTTTCAATCTTTTGTATTGAAGAACTTTTAA

Protein sequence

>MS.gene33412.t1

MASDLSLGEDDFDQTSQTSFSGGDYDDLGIEAKRWKGENENDSYSYSTEGCRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCTVRKHVERASHDIKAVITTYEGKHNHDVPLGRGISSSSINNRTSLNNNTCNVTPIRPSAVTNYSSLANFTNSLHDSKLSNSENQEHFQLDMLMNSRSFLDRSIGSNTNSEQYSAKDDSFFQSFVLKNF