Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33521.t1 | GAU43663.1 | 89 | 308 | 22 | 4 | 1 | 296 | 1 | 308 | 2.30E-142 | 515 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33521.t1 | Q9S7N9 | 67.3 | 205 | 62 | 3 | 93 | 296 | 57 | 257 | 4.5e-70 | 266.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33521.t1 | A0A2Z6NNS2 | 89.0 | 308 | 22 | 4 | 1 | 296 | 1 | 308 | 1.7e-142 | 515.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049861 | MS.gene33521 | 0.809296 | 2.03E-50 | -1.69E-46 |
| MS.gene050384 | MS.gene33521 | 0.803518 | 3.35E-49 | -1.69E-46 |
| MS.gene050386 | MS.gene33521 | 0.815059 | 1.12E-51 | -1.69E-46 |
| MS.gene050646 | MS.gene33521 | 0.82207 | 2.88E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene33521 | 0.809076 | 2.26E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene33521 | 0.801007 | 1.10E-48 | -1.69E-46 |
| MS.gene052072 | MS.gene33521 | 0.803803 | 2.93E-49 | -1.69E-46 |
| MS.gene057233 | MS.gene33521 | 0.855306 | 6.89E-62 | -1.69E-46 |
| MS.gene057234 | MS.gene33521 | 0.830033 | 3.69E-55 | -1.69E-46 |
| MS.gene057999 | MS.gene33521 | 0.816122 | 6.51E-52 | -1.69E-46 |
| MS.gene058054 | MS.gene33521 | 0.842704 | 2.20E-58 | -1.69E-46 |
| MS.gene058055 | MS.gene33521 | 0.8497 | 2.73E-60 | -1.69E-46 |
| MS.gene058074 | MS.gene33521 | 0.830087 | 3.58E-55 | -1.69E-46 |
| MS.gene059590 | MS.gene33521 | 0.804477 | 2.12E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene33521 | 0.805938 | 1.05E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013509 | MS.gene33521 | PPI |
| MS.gene06837 | MS.gene33521 | PPI |
| MS.gene06836 | MS.gene33521 | PPI |
| MS.gene33521 | MS.gene06621 | PPI |
| MS.gene06838 | MS.gene33521 | PPI |
| MS.gene06620 | MS.gene33521 | PPI |
| MS.gene33521 | MS.gene057233 | PPI |
| MS.gene013510 | MS.gene33521 | PPI |
| MS.gene057233 | MS.gene33521 | PPI |
| MS.gene057234 | MS.gene33521 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33521.t1 | MTR_3g092510 | 97.324 | 299 | 5 | 1 | 1 | 296 | 1 | 299 | 0.0 | 605 |
| MS.gene33521.t1 | MTR_3g092510 | 43.878 | 98 | 51 | 2 | 181 | 277 | 281 | 375 | 1.05e-15 | 77.0 |
| MS.gene33521.t1 | MTR_3g092550 | 74.062 | 320 | 45 | 10 | 1 | 296 | 1 | 306 | 2.96e-156 | 441 |
| MS.gene33521.t1 | MTR_3g092550 | 42.529 | 87 | 49 | 1 | 181 | 266 | 288 | 374 | 1.35e-14 | 73.9 |
| MS.gene33521.t1 | MTR_2g070540 | 58.462 | 195 | 79 | 1 | 102 | 296 | 28 | 220 | 1.64e-76 | 235 |
| MS.gene33521.t1 | MTR_2g070540 | 42.353 | 85 | 48 | 1 | 185 | 268 | 206 | 290 | 4.65e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33521.t1 | AT3G49390 | 52.703 | 296 | 120 | 6 | 1 | 296 | 1 | 276 | 9.95e-97 | 289 |
| MS.gene33521.t1 | AT3G49390 | 46.465 | 99 | 47 | 4 | 181 | 278 | 258 | 351 | 9.17e-15 | 73.9 |
| MS.gene33521.t1 | AT3G49390 | 52.703 | 296 | 120 | 6 | 1 | 296 | 1 | 276 | 9.95e-97 | 289 |
| MS.gene33521.t1 | AT3G49390 | 46.465 | 99 | 47 | 4 | 181 | 278 | 258 | 351 | 9.17e-15 | 73.9 |
| MS.gene33521.t1 | AT3G49390 | 52.703 | 296 | 120 | 6 | 1 | 296 | 1 | 276 | 9.95e-97 | 289 |
| MS.gene33521.t1 | AT3G49390 | 46.465 | 99 | 47 | 4 | 181 | 278 | 258 | 351 | 9.17e-15 | 73.9 |
| MS.gene33521.t1 | AT4G10610 | 65.238 | 210 | 58 | 3 | 93 | 296 | 57 | 257 | 9.71e-95 | 283 |
| MS.gene33521.t1 | AT4G10610 | 65.238 | 210 | 58 | 3 | 93 | 296 | 57 | 257 | 1.25e-94 | 283 |
| MS.gene33521.t1 | AT4G10610 | 40.404 | 99 | 55 | 2 | 181 | 278 | 239 | 334 | 1.95e-14 | 73.2 |
| MS.gene33521.t1 | AT1G32790 | 66.351 | 211 | 66 | 2 | 90 | 296 | 71 | 280 | 2.28e-93 | 281 |
| MS.gene33521.t1 | AT1G32790 | 43.478 | 92 | 51 | 1 | 181 | 271 | 262 | 353 | 1.17e-15 | 76.6 |
| MS.gene33521.t1 | AT1G32790 | 66.351 | 211 | 66 | 2 | 90 | 296 | 71 | 280 | 2.69e-93 | 282 |
| MS.gene33521.t1 | AT1G53650 | 56.410 | 195 | 70 | 2 | 101 | 295 | 49 | 228 | 2.05e-74 | 231 |
| MS.gene33521.t1 | AT1G53650 | 42.529 | 87 | 49 | 1 | 181 | 266 | 211 | 297 | 2.88e-14 | 72.4 |
| MS.gene33521.t1 | AT3G14450 | 48.536 | 239 | 102 | 4 | 70 | 296 | 19 | 248 | 2.42e-73 | 228 |
| MS.gene33521.t1 | AT3G14450 | 39.326 | 89 | 53 | 1 | 181 | 268 | 230 | 318 | 5.10e-13 | 68.9 |
| MS.gene33521.t1 | AT5G24440 | 43.478 | 299 | 111 | 6 | 1 | 296 | 1 | 244 | 1.72e-68 | 216 |
| MS.gene33521.t1 | AT5G24440 | 44.304 | 79 | 43 | 1 | 189 | 266 | 234 | 312 | 5.05e-12 | 65.9 |
| MS.gene33521.t1 | AT1G53650 | 54.726 | 201 | 70 | 3 | 101 | 295 | 49 | 234 | 3.32e-68 | 215 |
| MS.gene33521.t1 | AT1G53650 | 42.529 | 87 | 49 | 1 | 181 | 266 | 217 | 303 | 4.88e-14 | 71.6 |
Find 74 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGACTTGATGAACCGATTT+TGG | 0.114098 | 3.1:+74505876 | None:intergenic |
| CGGTTCATCAAGTCAGAATT+TGG | 0.175529 | 3.1:-74505869 | MS.gene33521:CDS |
| TGAAGCTGTAATTACCATTT+TGG | 0.185564 | 3.1:+74505740 | None:intergenic |
| TGTTCAGAACCAGCAGTTTA+TGG | 0.209925 | 3.1:-74505692 | MS.gene33521:CDS |
| TTAAGAAGTATAAAATTGTT+AGG | 0.257529 | 3.1:+74505478 | None:intergenic |
| GACAGGTGCAATGGCAGTTT+TGG | 0.297685 | 3.1:+74504458 | None:intergenic |
| TTAGCTGCTGGACCTGCTGC+TGG | 0.319582 | 3.1:-74505511 | MS.gene33521:CDS |
| TCCATACCCTACGGTTAGTT+TGG | 0.330085 | 3.1:+74505434 | None:intergenic |
| GGCAAATCGGAGAATAGAAT+TGG | 0.332888 | 3.1:+74504663 | None:intergenic |
| AGCGAATCATAAAGTGGATA+TGG | 0.334771 | 3.1:-74505282 | MS.gene33521:CDS |
| GCTGGACCTGCTGCTGGGTT+TGG | 0.337646 | 3.1:-74505505 | MS.gene33521:CDS |
| TTCATTGAGTTTACAGATGA+AGG | 0.345676 | 3.1:-74504640 | MS.gene33521:intron |
| TAAGCGTGAAATGAGGGATT+TGG | 0.349931 | 3.1:-74505608 | MS.gene33521:CDS |
| TTCAACCATCAACACCAAAA+TGG | 0.363787 | 3.1:-74505754 | MS.gene33521:CDS |
| AGAAAAGAGAAGAGATGATT+AGG | 0.382555 | 3.1:-74505259 | MS.gene33521:CDS |
| GGCTGTAGGTTGTTGATTGT+CGG | 0.389761 | 3.1:-74504699 | MS.gene33521:intron |
| AGGGCTGCTGTAAGCCTGTC+TGG | 0.404077 | 3.1:-74504519 | MS.gene33521:CDS |
| CAGCTTCAAGACTCATCAAA+TGG | 0.409609 | 3.1:-74505725 | MS.gene33521:CDS |
| AAGCCTGTCTGGAACTATGC+TGG | 0.410248 | 3.1:-74504508 | MS.gene33521:CDS |
| AAGAATGGCTACACTACTAA+TGG | 0.438109 | 3.1:-74505314 | MS.gene33521:CDS |
| ATCGAAACCGAGGACCGATC+AGG | 0.441198 | 3.1:-74505797 | MS.gene33521:CDS |
| TAAGAAGTATAAAATTGTTA+GGG | 0.444999 | 3.1:+74505479 | None:intergenic |
| TTCACATCCTGATCGGTCCT+CGG | 0.451129 | 3.1:+74505790 | None:intergenic |
| GAAAATGTTGGTGCCAAAAT+CGG | 0.469626 | 3.1:-74505889 | MS.gene33521:CDS |
| TAGCTGCTGGACCTGCTGCT+GGG | 0.473262 | 3.1:-74505510 | MS.gene33521:CDS |
| TTGGAAGGCAGCACTCTCAA+TGG | 0.478989 | 3.1:+74504477 | None:intergenic |
| TAAACTCAATGAAGGCAAAT+CGG | 0.481637 | 3.1:+74504650 | None:intergenic |
| CTAGGTTACCGAAGAGCAGC+TGG | 0.486453 | 3.1:-74505097 | MS.gene33521:intron |
| GGTATGAGAAATGGTGAGAA+TGG | 0.491432 | 3.1:-74505643 | MS.gene33521:CDS |
| TTCATCTGTAAACTCAATGA+AGG | 0.492617 | 3.1:+74504642 | None:intergenic |
| TGGAAGGCAGCACTCTCAAT+GGG | 0.493363 | 3.1:+74504478 | None:intergenic |
| CAGTTTATGGTGAACAATGA+TGG | 0.493578 | 3.1:-74505679 | MS.gene33521:CDS |
| GCTGTAGGTTGTTGATTGTC+GGG | 0.497702 | 3.1:-74504698 | MS.gene33521:intron |
| GAGAGATGCCAGCTGCTCTT+CGG | 0.503624 | 3.1:+74505089 | None:intergenic |
| AGCCTGTCTGGAACTATGCT+GGG | 0.503870 | 3.1:-74504507 | MS.gene33521:CDS |
| GTGATGAATGGTATGAGAAA+TGG | 0.508297 | 3.1:-74505652 | MS.gene33521:CDS |
| GCATCTCTCTTTCTTAATTG+CGG | 0.509572 | 3.1:-74505075 | MS.gene33521:CDS |
| TGTGTCTGATATTGATCAGC+TGG | 0.511413 | 3.1:-74505225 | MS.gene33521:intron |
| AATAATTATGCTAATGCTAA+CGG | 0.512676 | 3.1:-74505457 | MS.gene33521:CDS |
| GTTTCAGTCTGAAGATGAAA+GGG | 0.512987 | 3.1:-74504304 | MS.gene33521:intron |
| TGTTTCAGTCTGAAGATGAA+AGG | 0.515245 | 3.1:-74504305 | MS.gene33521:intron |
| GCAAATCGGAGAATAGAATT+GGG | 0.516838 | 3.1:+74504664 | None:intergenic |
| AAAGAGAAGAGATGATTAGG+AGG | 0.524216 | 3.1:-74505256 | MS.gene33521:CDS |
| AATCATGGCTACTTAGCTGC+TGG | 0.525224 | 3.1:-74505523 | MS.gene33521:CDS |
| CATTGTTCACCATAAACTGC+TGG | 0.530549 | 3.1:+74505683 | None:intergenic |
| GGGTAACCAAACCCAGCAGC+AGG | 0.537106 | 3.1:+74505499 | None:intergenic |
| AGGCACAAATTCCTCAGCCA+TGG | 0.537373 | 3.1:+74505561 | None:intergenic |
| AGCTTCAAGACTCATCAAAT+GGG | 0.539915 | 3.1:-74505724 | MS.gene33521:CDS |
| CTGCACAAACATTGACAAGA+AGG | 0.541546 | 3.1:-74504259 | None:intergenic |
| GCGAAGAGCGAATCATAAAG+TGG | 0.552369 | 3.1:-74505288 | MS.gene33521:CDS |
| CCGTCGCTAACAAATAATCA+TGG | 0.562558 | 3.1:-74505538 | MS.gene33521:CDS |
| TCTCTTTCTTAATTGCGGCC+AGG | 0.567558 | 3.1:-74505070 | MS.gene33521:intron |
| AATGATGGATATGTGATGAA+TGG | 0.569689 | 3.1:-74505664 | MS.gene33521:CDS |
| GTTGTTGTTCACATCCTGAT+CGG | 0.571533 | 3.1:+74505783 | None:intergenic |
| TGATTATTTGTTAGCGACGG+AGG | 0.572810 | 3.1:+74505541 | None:intergenic |
| ACCCCAGCATAGTTCCAGAC+AGG | 0.575054 | 3.1:+74504505 | None:intergenic |
| GGCACAAATTCCTCAGCCAT+GGG | 0.576547 | 3.1:+74505562 | None:intergenic |
| ATGGCTGTTGCTGAAAATGT+TGG | 0.578892 | 3.1:-74505901 | MS.gene33521:CDS |
| CCATGATTATTTGTTAGCGA+CGG | 0.584715 | 3.1:+74505538 | None:intergenic |
| GTTGTTGATTGTCGGGTATG+CGG | 0.593806 | 3.1:-74504691 | MS.gene33521:CDS |
| AAAGCTGAATCCCATGGCTG+AGG | 0.595003 | 3.1:-74505572 | MS.gene33521:CDS |
| TTGTACATGCAGAGAGTGCA+AGG | 0.595706 | 3.1:-74504539 | MS.gene33521:intron |
| ATCATCTGACTCAACTGAGG+TGG | 0.609851 | 3.1:-74505824 | MS.gene33521:CDS |
| CTAACGGCCAAACTAACCGT+AGG | 0.628743 | 3.1:-74505441 | MS.gene33521:CDS |
| TGTTGGATTGACAGGTGCAA+TGG | 0.631796 | 3.1:+74504449 | None:intergenic |
| GCCTGTCTGGAACTATGCTG+GGG | 0.640656 | 3.1:-74504506 | MS.gene33521:CDS |
| ATGAGAAATGGTGAGAATGG+AGG | 0.651521 | 3.1:-74505640 | MS.gene33521:CDS |
| TAACGGCCAAACTAACCGTA+GGG | 0.656336 | 3.1:-74505440 | MS.gene33521:intron |
| GTTGTCAAAGCTGAATCCCA+TGG | 0.699172 | 3.1:-74505578 | MS.gene33521:CDS |
| CGTATCATCTGACTCAACTG+AGG | 0.701261 | 3.1:-74505827 | MS.gene33521:CDS |
| AGGTGGAGAAATCGAAACCG+AGG | 0.703142 | 3.1:-74505807 | MS.gene33521:CDS |
| GATCAGGATGTGAACAACAA+CGG | 0.735570 | 3.1:-74505781 | MS.gene33521:CDS |
| TGTACATGCAGAGAGTGCAA+GGG | 0.746861 | 3.1:-74504538 | MS.gene33521:intron |
| TTGAGTCAGATGATACGACG+TGG | 0.773827 | 3.1:+74505833 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAATTTAATCATATACAA+AGG | - | chr3.1:74505263-74505282 | MS.gene33521:CDS | 15.0% |
| !!! | TAAGAAGTATAAAATTGTTA+GGG | + | chr3.1:74504685-74504704 | None:intergenic | 15.0% |
| !!! | TTAAGAAGTATAAAATTGTT+AGG | + | chr3.1:74504686-74504705 | None:intergenic | 15.0% |
| !! | AAAAACACATCATTGTATTA+AGG | + | chr3.1:74504821-74504840 | None:intergenic | 20.0% |
| !! | AATAATTATGCTAATGCTAA+CGG | - | chr3.1:74504704-74504723 | MS.gene33521:intron | 20.0% |
| !!! | ATTGTCATTTGTACTATTTA+GGG | - | chr3.1:74505385-74505404 | MS.gene33521:intron | 20.0% |
| !!! | TAATGATTGTTGTTTTATGT+CGG | - | chr3.1:74505038-74505057 | MS.gene33521:intron | 20.0% |
| ! | AGGTAAATTATTATTCACTC+TGG | + | chr3.1:74505799-74505818 | None:intergenic | 25.0% |
| ! | GTTAAAAAATATACCTTCGA+TGG | + | chr3.1:74505245-74505264 | None:intergenic | 25.0% |
| ! | TAGTACAAATGACAATGTAA+CGG | + | chr3.1:74505381-74505400 | None:intergenic | 25.0% |
| !! | CATTGTCATTTGTACTATTT+AGG | - | chr3.1:74505384-74505403 | MS.gene33521:intron | 25.0% |
| !!! | CAAATCATTTTAGTATTGCT+TGG | + | chr3.1:74505343-74505362 | None:intergenic | 25.0% |
| !!! | TACAATGATGTGTTTTTTAG+AGG | - | chr3.1:74504824-74504843 | MS.gene33521:intron | 25.0% |
| AACAAAATATCCATACCCTA+CGG | + | chr3.1:74504739-74504758 | None:intergenic | 30.0% | |
| ACAAACGAAAGAAAGAAAAG+AGG | + | chr3.1:74505819-74505838 | None:intergenic | 30.0% | |
| ACACGTCATTTACTATTGTT+TGG | + | chr3.1:74505290-74505309 | None:intergenic | 30.0% | |
| ACATCATAGACAAAACGTAT+CGG | + | chr3.1:74505123-74505142 | None:intergenic | 30.0% | |
| AGAAAAGAGAAGAGATGATT+AGG | - | chr3.1:74504902-74504921 | MS.gene33521:intron | 30.0% | |
| CTCTTTCATTAATTTCCTGT+TGG | - | chr3.1:74504764-74504783 | MS.gene33521:intron | 30.0% | |
| GCATATGACCAACAAATATT+TGG | + | chr3.1:74505558-74505577 | None:intergenic | 30.0% | |
| GGTAAACCATCATTAAGAAA+GGG | + | chr3.1:74505415-74505434 | None:intergenic | 30.0% | |
| TAAACTCAATGAAGGCAAAT+CGG | + | chr3.1:74505514-74505533 | None:intergenic | 30.0% | |
| TAATAGTTCTCTTCAGAAAG+AGG | + | chr3.1:74505155-74505174 | None:intergenic | 30.0% | |
| TGGTAAACCATCATTAAGAA+AGG | + | chr3.1:74505416-74505435 | None:intergenic | 30.0% | |
| TTCATCTGTAAACTCAATGA+AGG | + | chr3.1:74505522-74505541 | None:intergenic | 30.0% | |
| TTCATTGAGTTTACAGATGA+AGG | - | chr3.1:74505521-74505540 | MS.gene33521:CDS | 30.0% | |
| ! | TGAAGCTGTAATTACCATTT+TGG | + | chr3.1:74504424-74504443 | None:intergenic | 30.0% |
| !! | AATGATGGATATGTGATGAA+TGG | - | chr3.1:74504497-74504516 | MS.gene33521:CDS | 30.0% |
| !!! | AATTACCATTTTGGTGTTGA+TGG | + | chr3.1:74504415-74504434 | None:intergenic | 30.0% |
| !!! | TGTGTTTTTTAGAGGAAGAA+TGG | - | chr3.1:74504832-74504851 | MS.gene33521:intron | 30.0% |
| AAAGAGAAGAGATGATTAGG+AGG | - | chr3.1:74504905-74504924 | MS.gene33521:intron | 35.0% | |
| AAGAATGGCTACACTACTAA+TGG | - | chr3.1:74504847-74504866 | MS.gene33521:intron | 35.0% | |
| AGCGAATCATAAAGTGGATA+TGG | - | chr3.1:74504879-74504898 | MS.gene33521:intron | 35.0% | |
| AGCTTCAAGACTCATCAAAT+GGG | - | chr3.1:74504437-74504456 | MS.gene33521:CDS | 35.0% | |
| ATTTGATCTGATACCATCGA+AGG | - | chr3.1:74505229-74505248 | MS.gene33521:CDS | 35.0% | |
| CACCAACACCAAATATTTGT+TGG | - | chr3.1:74505547-74505566 | MS.gene33521:CDS | 35.0% | |
| CAGTTTATGGTGAACAATGA+TGG | - | chr3.1:74504482-74504501 | MS.gene33521:CDS | 35.0% | |
| CATAGCATCAAAAAACCAAC+AGG | + | chr3.1:74504782-74504801 | None:intergenic | 35.0% | |
| GCAAATCGGAGAATAGAATT+GGG | + | chr3.1:74505500-74505519 | None:intergenic | 35.0% | |
| GCATCTCTCTTTCTTAATTG+CGG | - | chr3.1:74505086-74505105 | MS.gene33521:CDS | 35.0% | |
| GTGATGAATGGTATGAGAAA+TGG | - | chr3.1:74504509-74504528 | MS.gene33521:CDS | 35.0% | |
| GTTTCAGTCTGAAGATGAAA+GGG | - | chr3.1:74505857-74505876 | MS.gene33521:CDS | 35.0% | |
| TGTTTCAGTCTGAAGATGAA+AGG | - | chr3.1:74505856-74505875 | MS.gene33521:CDS | 35.0% | |
| TTCAACCATCAACACCAAAA+TGG | - | chr3.1:74504407-74504426 | MS.gene33521:intron | 35.0% | |
| ! | CCATGATTATTTGTTAGCGA+CGG | + | chr3.1:74504626-74504645 | None:intergenic | 35.0% |
| ! | GGTTTTCCCTTTCTTAATGA+TGG | - | chr3.1:74505406-74505425 | MS.gene33521:intron | 35.0% |
| !! | ATCTAAGAAAAGCATTACCC+TGG | + | chr3.1:74505745-74505764 | None:intergenic | 35.0% |
| !! | GAAAATGTTGGTGCCAAAAT+CGG | - | chr3.1:74504272-74504291 | MS.gene33521:CDS | 35.0% |
| !! | GACCAACAAATATTTGGTGT+TGG | + | chr3.1:74505552-74505571 | None:intergenic | 35.0% |
| !! | GTTGTTTTATGTCGGAATCT+AGG | - | chr3.1:74505046-74505065 | MS.gene33521:intron | 35.0% |
| !! | TCTAAGAAAAGCATTACCCT+GGG | + | chr3.1:74505744-74505763 | None:intergenic | 35.0% |
| !!! | AGAGTTTTAAGCGTGAAATG+AGG | - | chr3.1:74504546-74504565 | MS.gene33521:intron | 35.0% |
| !!! | GAGTTTTAAGCGTGAAATGA+GGG | - | chr3.1:74504547-74504566 | MS.gene33521:intron | 35.0% |
| ATGAGAAATGGTGAGAATGG+AGG | - | chr3.1:74504521-74504540 | MS.gene33521:CDS | 40.0% | |
| ATGGCTGTTGCTGAAAATGT+TGG | - | chr3.1:74504260-74504279 | MS.gene33521:CDS | 40.0% | |
| ATTACCCTGGGCAAAAATGT+TGG | + | chr3.1:74505732-74505751 | None:intergenic | 40.0% | |
| CAGCTTCAAGACTCATCAAA+TGG | - | chr3.1:74504436-74504455 | MS.gene33521:intron | 40.0% | |
| CATTGTTCACCATAAACTGC+TGG | + | chr3.1:74504481-74504500 | None:intergenic | 40.0% | |
| CCGTCGCTAACAAATAATCA+TGG | - | chr3.1:74504623-74504642 | MS.gene33521:intron | 40.0% | |
| CGGTTCATCAAGTCAGAATT+TGG | - | chr3.1:74504292-74504311 | MS.gene33521:CDS | 40.0% | |
| CTTTCGTTTGTGATGACTGA+TGG | - | chr3.1:74505828-74505847 | MS.gene33521:CDS | 40.0% | |
| GATCAGGATGTGAACAACAA+CGG | - | chr3.1:74504380-74504399 | MS.gene33521:intron | 40.0% | |
| GGCAAAAATGTTGGATTGAC+AGG | + | chr3.1:74505723-74505742 | None:intergenic | 40.0% | |
| GGCAAATCGGAGAATAGAAT+TGG | + | chr3.1:74505501-74505520 | None:intergenic | 40.0% | |
| GGTATGAGAAATGGTGAGAA+TGG | - | chr3.1:74504518-74504537 | MS.gene33521:CDS | 40.0% | |
| TAAGCGTGAAATGAGGGATT+TGG | - | chr3.1:74504553-74504572 | MS.gene33521:intron | 40.0% | |
| TCTGATATTGATCAGCTGGT+AGG | - | chr3.1:74504940-74504959 | MS.gene33521:intron | 40.0% | |
| TGTGTCTGATATTGATCAGC+TGG | - | chr3.1:74504936-74504955 | MS.gene33521:intron | 40.0% | |
| TGTTCAGAACCAGCAGTTTA+TGG | - | chr3.1:74504469-74504488 | MS.gene33521:CDS | 40.0% | |
| ! | CAATCCAACATTTTTGCCCA+GGG | - | chr3.1:74505725-74505744 | MS.gene33521:CDS | 40.0% |
| ! | GTTGTTGTTCACATCCTGAT+CGG | + | chr3.1:74504381-74504400 | None:intergenic | 40.0% |
| ! | TCAATCCAACATTTTTGCCC+AGG | - | chr3.1:74505724-74505743 | MS.gene33521:CDS | 40.0% |
| ! | TGATTATTTGTTAGCGACGG+AGG | + | chr3.1:74504623-74504642 | None:intergenic | 40.0% |
| !! | AAAACGTATCGGTTACTACC+TGG | + | chr3.1:74505112-74505131 | None:intergenic | 40.0% |
| !! | CTGACTTGATGAACCGATTT+TGG | + | chr3.1:74504288-74504307 | None:intergenic | 40.0% |
| AACTCGTATTTCCTGGCTGT+AGG | - | chr3.1:74505448-74505467 | MS.gene33521:CDS | 45.0% | |
| AATCATGGCTACTTAGCTGC+TGG | - | chr3.1:74504638-74504657 | MS.gene33521:intron | 45.0% | |
| ACAATCAACAACCTACAGCC+AGG | + | chr3.1:74505462-74505481 | None:intergenic | 45.0% | |
| ATCATCTGACTCAACTGAGG+TGG | - | chr3.1:74504337-74504356 | MS.gene33521:intron | 45.0% | |
| CGTATCATCTGACTCAACTG+AGG | - | chr3.1:74504334-74504353 | MS.gene33521:intron | 45.0% | |
| GCGAAGAGCGAATCATAAAG+TGG | - | chr3.1:74504873-74504892 | MS.gene33521:intron | 45.0% | |
| GTTGTCAAAGCTGAATCCCA+TGG | - | chr3.1:74504583-74504602 | MS.gene33521:intron | 45.0% | |
| TAACGGCCAAACTAACCGTA+GGG | - | chr3.1:74504721-74504740 | MS.gene33521:intron | 45.0% | |
| TCTCTTTCTTAATTGCGGCC+AGG | - | chr3.1:74505091-74505110 | MS.gene33521:CDS | 45.0% | |
| TGTTGGATTGACAGGTGCAA+TGG | + | chr3.1:74505715-74505734 | None:intergenic | 45.0% | |
| TTGAGTCAGATGATACGACG+TGG | + | chr3.1:74504331-74504350 | None:intergenic | 45.0% | |
| ! | CCAGGAAATACGAGTTGACA+CGG | + | chr3.1:74505444-74505463 | None:intergenic | 45.0% |
| ! | GCTGTAGGTTGTTGATTGTC+GGG | - | chr3.1:74505463-74505482 | MS.gene33521:CDS | 45.0% |
| ! | GGCTGTAGGTTGTTGATTGT+CGG | - | chr3.1:74505462-74505481 | MS.gene33521:CDS | 45.0% |
| ! | GTTGTTGATTGTCGGGTATG+CGG | - | chr3.1:74505470-74505489 | MS.gene33521:CDS | 45.0% |
| ! | TACGAGTTGACACGGTAACA+TGG | + | chr3.1:74505436-74505455 | None:intergenic | 45.0% |
| ! | TCCATACCCTACGGTTAGTT+TGG | + | chr3.1:74504730-74504749 | None:intergenic | 45.0% |
| ! | TGTACATGCAGAGAGTGCAA+GGG | - | chr3.1:74505623-74505642 | MS.gene33521:CDS | 45.0% |
| ! | TTGTACATGCAGAGAGTGCA+AGG | - | chr3.1:74505622-74505641 | MS.gene33521:CDS | 45.0% |
| AAAGCTGAATCCCATGGCTG+AGG | - | chr3.1:74504589-74504608 | MS.gene33521:intron | 50.0% | |
| AGGCACAAATTCCTCAGCCA+TGG | + | chr3.1:74504603-74504622 | None:intergenic | 50.0% | |
| AGGTGGAGAAATCGAAACCG+AGG | - | chr3.1:74504354-74504373 | MS.gene33521:intron | 50.0% | |
| CCGTGTCAACTCGTATTTCC+TGG | - | chr3.1:74505441-74505460 | MS.gene33521:CDS | 50.0% | |
| CTAACGGCCAAACTAACCGT+AGG | - | chr3.1:74504720-74504739 | MS.gene33521:intron | 50.0% | |
| GCCAAACTAACCGTAGGGTA+TGG | - | chr3.1:74504726-74504745 | MS.gene33521:intron | 50.0% | |
| GGCACAAATTCCTCAGCCAT+GGG | + | chr3.1:74504602-74504621 | None:intergenic | 50.0% | |
| TGGAAGGCAGCACTCTCAAT+GGG | + | chr3.1:74505686-74505705 | None:intergenic | 50.0% | |
| TTCACATCCTGATCGGTCCT+CGG | + | chr3.1:74504374-74504393 | None:intergenic | 50.0% | |
| TTGGAAGGCAGCACTCTCAA+TGG | + | chr3.1:74505687-74505706 | None:intergenic | 50.0% | |
| ! | AAGCCTGTCTGGAACTATGC+TGG | - | chr3.1:74505653-74505672 | MS.gene33521:CDS | 50.0% |
| ! | AGCCTGTCTGGAACTATGCT+GGG | - | chr3.1:74505654-74505673 | MS.gene33521:CDS | 50.0% |
| ! | GACAGGTGCAATGGCAGTTT+TGG | + | chr3.1:74505706-74505725 | None:intergenic | 50.0% |
| !!! | GGTGCAATGGCAGTTTTGGA+AGG | + | chr3.1:74505702-74505721 | None:intergenic | 50.0% |
| ACCCCAGCATAGTTCCAGAC+AGG | + | chr3.1:74505659-74505678 | None:intergenic | 55.0% | |
| ATCGAAACCGAGGACCGATC+AGG | - | chr3.1:74504364-74504383 | MS.gene33521:intron | 55.0% | |
| CTAGGTTACCGAAGAGCAGC+TGG | - | chr3.1:74505064-74505083 | MS.gene33521:intron | 55.0% | |
| GAGAGATGCCAGCTGCTCTT+CGG | + | chr3.1:74505075-74505094 | None:intergenic | 55.0% | |
| ! | GCCTGTCTGGAACTATGCTG+GGG | - | chr3.1:74505655-74505674 | MS.gene33521:CDS | 55.0% |
| AGGGCTGCTGTAAGCCTGTC+TGG | - | chr3.1:74505642-74505661 | MS.gene33521:CDS | 60.0% | |
| GGGTAACCAAACCCAGCAGC+AGG | + | chr3.1:74504665-74504684 | None:intergenic | 60.0% | |
| TAGCTGCTGGACCTGCTGCT+GGG | - | chr3.1:74504651-74504670 | MS.gene33521:CDS | 60.0% | |
| TTAGCTGCTGGACCTGCTGC+TGG | - | chr3.1:74504650-74504669 | MS.gene33521:CDS | 60.0% | |
| GCTGGACCTGCTGCTGGGTT+TGG | - | chr3.1:74504656-74504675 | MS.gene33521:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 74504260 | 74505923 | 74504260 | ID=MS.gene33521 |
| chr3.1 | mRNA | 74504260 | 74505923 | 74504260 | ID=MS.gene33521.t1;Parent=MS.gene33521 |
| chr3.1 | exon | 74505441 | 74505923 | 74505441 | ID=MS.gene33521.t1.exon1;Parent=MS.gene33521.t1 |
| chr3.1 | CDS | 74505441 | 74505923 | 74505441 | ID=cds.MS.gene33521.t1;Parent=MS.gene33521.t1 |
| chr3.1 | exon | 74505226 | 74505339 | 74505226 | ID=MS.gene33521.t1.exon2;Parent=MS.gene33521.t1 |
| chr3.1 | CDS | 74505226 | 74505339 | 74505226 | ID=cds.MS.gene33521.t1;Parent=MS.gene33521.t1 |
| chr3.1 | exon | 74505071 | 74505115 | 74505071 | ID=MS.gene33521.t1.exon3;Parent=MS.gene33521.t1 |
| chr3.1 | CDS | 74505071 | 74505115 | 74505071 | ID=cds.MS.gene33521.t1;Parent=MS.gene33521.t1 |
| chr3.1 | exon | 74504641 | 74504713 | 74504641 | ID=MS.gene33521.t1.exon4;Parent=MS.gene33521.t1 |
| chr3.1 | CDS | 74504641 | 74504713 | 74504641 | ID=cds.MS.gene33521.t1;Parent=MS.gene33521.t1 |
| chr3.1 | exon | 74504437 | 74504549 | 74504437 | ID=MS.gene33521.t1.exon5;Parent=MS.gene33521.t1 |
| chr3.1 | CDS | 74504437 | 74504549 | 74504437 | ID=cds.MS.gene33521.t1;Parent=MS.gene33521.t1 |
| chr3.1 | exon | 74504260 | 74504319 | 74504260 | ID=MS.gene33521.t1.exon6;Parent=MS.gene33521.t1 |
| chr3.1 | CDS | 74504260 | 74504319 | 74504260 | ID=cds.MS.gene33521.t1;Parent=MS.gene33521.t1 |
| Gene Sequence |
| Protein sequence |
