AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06836


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06836.t1 MTR_3g092550 85.797 345 3 1 1 299 1 345 0.0 599
MS.gene06836.t1 MTR_3g092550 41.379 87 50 1 145 230 288 374 4.09e-13 69.3
MS.gene06836.t1 MTR_3g092510 71.429 350 37 8 1 299 1 338 6.87e-169 473
MS.gene06836.t1 MTR_3g092510 42.857 98 52 2 145 241 281 375 3.65e-14 72.4
MS.gene06836.t1 MTR_2g070540 60.345 232 56 2 104 299 28 259 4.47e-96 285
MS.gene06836.t1 MTR_2g070540 43.529 85 47 1 149 232 206 290 4.10e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06836.t1 AT4G10610 60.357 280 66 3 55 299 27 296 7.70e-119 344
MS.gene06836.t1 AT4G10610 60.357 280 66 3 55 299 27 296 1.90e-118 344
MS.gene06836.t1 AT4G10610 41.414 99 54 2 145 242 239 334 1.46e-14 73.6
MS.gene06836.t1 AT3G49390 51.506 332 110 4 1 299 1 314 8.67e-117 340
MS.gene06836.t1 AT3G49390 46.465 99 47 4 145 242 258 351 6.90e-14 71.6
MS.gene06836.t1 AT3G49390 51.506 332 110 4 1 299 1 314 8.67e-117 340
MS.gene06836.t1 AT3G49390 46.465 99 47 4 145 242 258 351 6.90e-14 71.6
MS.gene06836.t1 AT3G49390 51.506 332 110 4 1 299 1 314 8.67e-117 340
MS.gene06836.t1 AT3G49390 46.465 99 47 4 145 242 258 351 6.90e-14 71.6
MS.gene06836.t1 AT1G32790 61.887 265 57 2 79 299 55 319 1.03e-115 338
MS.gene06836.t1 AT1G32790 44.565 92 50 1 145 235 262 353 4.76e-16 77.8
MS.gene06836.t1 AT1G32790 61.887 265 57 2 79 299 55 319 1.87e-115 338
MS.gene06836.t1 AT1G32790 43.038 79 44 1 145 222 262 340 4.31e-11 63.5
MS.gene06836.t1 AT1G53650 63.182 220 58 3 103 299 49 268 2.40e-95 284
MS.gene06836.t1 AT1G53650 43.678 87 48 1 145 230 211 297 2.66e-14 72.4
MS.gene06836.t1 AT3G14450 57.322 239 60 1 103 299 49 287 4.35e-94 281
MS.gene06836.t1 AT3G14450 41.573 89 51 1 145 232 230 318 1.87e-13 70.1
MS.gene06836.t1 AT1G53650 59.735 226 62 2 103 299 49 274 4.62e-92 276
MS.gene06836.t1 AT1G53650 43.678 87 48 1 145 230 217 303 3.46e-14 72.0
MS.gene06836.t1 AT5G24440 42.643 333 107 7 1 299 1 283 2.16e-84 256
MS.gene06836.t1 AT5G24440 45.570 79 42 1 153 230 234 312 4.02e-12 66.2

Find 80 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATTCTTCCAGTGAGAATT+TGG 0.139421 3.1:-74568744 MS.gene06836:CDS
CTCACTGGAAGAATCGATTT+TGG 0.195831 3.1:+74568751 None:intergenic
GTTCAGATTCTGATCGGTTT+TGG 0.204217 3.1:+74568670 None:intergenic
TGATGGGTATGGTGGGAATG+GGG 0.303136 3.1:-74568510 MS.gene06836:CDS
CAAGCGTGAAATGAGGGATT+TGG 0.308282 3.1:-74568477 MS.gene06836:CDS
GTTCAACGTCTGAGGCTTCT+TGG 0.322437 3.1:-74566718 MS.gene06836:CDS
TTGATGGGTATGGTGGGAAT+GGG 0.325031 3.1:-74568511 MS.gene06836:CDS
TTCAACGTCTGAGGCTTCTT+GGG 0.327500 3.1:-74566717 MS.gene06836:CDS
TGCAAACCGAAGAATGGAAT+TGG 0.331294 3.1:+74567470 None:intergenic
GTTGATGGGTATGGTGGGAA+TGG 0.353054 3.1:-74568512 MS.gene06836:CDS
TGGTTTCATGGCTCATCAAA+TGG 0.357089 3.1:-74568573 MS.gene06836:CDS
GATGGGTATGGTGGGAATGG+GGG 0.359851 3.1:-74568509 MS.gene06836:CDS
ACCAACAACGTTGGTGTTAA+CGG 0.363856 3.1:+74568640 None:intergenic
AAATGGTAACCATGGTTTCA+TGG 0.371051 3.1:-74568585 MS.gene06836:CDS
CAGAATCAGCATTTGGTTGA+TGG 0.381258 3.1:-74568527 MS.gene06836:CDS
ATGGGTCAGATGCATGGAAA+TGG 0.381795 3.1:-74568554 MS.gene06836:CDS
TTATGTCTACAGTTGGTGCT+AGG 0.385817 3.1:-74567352 MS.gene06836:intron
TGTGTCTGACATTGATCAAC+AGG 0.401213 3.1:-74568057 MS.gene06836:intron
GGGATCCCAATTCCATTCTT+CGG 0.402516 3.1:-74567476 MS.gene06836:CDS
TGGGGTTCAGAATCAGCATT+TGG 0.410154 3.1:-74568534 MS.gene06836:CDS
ATTTGTGCAATAAATTGTTC+TGG 0.413198 3.1:+74567088 None:intergenic
GGAATTTGTGCCACCTTCAC+TGG 0.418984 3.1:-74568420 MS.gene06836:intron
AACCTGTCTGGAACCATGCT+TGG 0.422116 3.1:-74567320 MS.gene06836:CDS
AGTGTATCATAAGATGGATA+TGG 0.424924 3.1:-74568114 MS.gene06836:CDS
ATGAAACCATGGTTACCATT+TGG 0.426411 3.1:+74568587 None:intergenic
TGGGTCAGATGCATGGAAAT+GGG 0.429882 3.1:-74568553 MS.gene06836:CDS
ACCGTTAACACCAACGTTGT+TGG 0.430956 3.1:-74568641 MS.gene06836:CDS
AGGGCTGCTTTGAACCTGTC+TGG 0.436132 3.1:-74567332 MS.gene06836:CDS
AGAAAAGAGAAGAGATGATT+CGG 0.457909 3.1:-74568091 MS.gene06836:CDS
TTGTTGATTGCCGAGTATGC+GGG 0.466260 3.1:-74567497 MS.gene06836:CDS
TATGTCTACAGTTGGTGCTA+GGG 0.469753 3.1:-74567351 MS.gene06836:intron
TTCGTTGAGTTTACTGATGA+AGG 0.475411 3.1:-74567447 MS.gene06836:intron
CAGCATTTGGTTGATGGGTA+TGG 0.475828 3.1:-74568521 MS.gene06836:CDS
AGAATCAGCATTTGGTTGAT+GGG 0.479989 3.1:-74568526 MS.gene06836:CDS
AACGAATGCAAACCGAAGAA+TGG 0.495857 3.1:+74567464 None:intergenic
GGACAACAGTGTTGTTTCAT+CGG 0.497652 3.1:-74568723 MS.gene06836:CDS
GCAAACCGAAGAATGGAATT+GGG 0.498667 3.1:+74567471 None:intergenic
GGTGCAATAGCAGTCTTTGA+AGG 0.507414 3.1:+74567275 None:intergenic
TTTGAAGGCAGCACTCTCAA+TGG 0.508142 3.1:+74567290 None:intergenic
CTAGGTTACTGAAGAGCAGC+TGG 0.510566 3.1:-74567936 MS.gene06836:intron
GGTTTCATGGCTCATCAAAT+GGG 0.513313 3.1:-74568572 MS.gene06836:CDS
GTTGGTGTTCAGATTCTGAT+CGG 0.518468 3.1:+74568664 None:intergenic
TCTCTTTCTTAACTGCGGCC+AGG 0.521464 3.1:-74567909 MS.gene06836:intron
CAACAAGACAGTGTTCCAAA+TGG 0.534163 3.1:-74568602 MS.gene06836:CDS
CATTTGGTTGATGGGTATGG+TGG 0.535130 3.1:-74568518 MS.gene06836:CDS
AATTGGGATCCCCGCATACT+CGG 0.536460 3.1:+74567487 None:intergenic
CATCAAATGGGTCAGATGCA+TGG 0.537520 3.1:-74568560 MS.gene06836:CDS
AACGTTGGTGTTAACGGTGT+TGG 0.540243 3.1:+74568646 None:intergenic
AAGCAATCCGAGTTGAATGA+TGG 0.541752 3.1:+74566689 None:intergenic
TTGCACAAATCTCGACAAGA+AGG 0.542950 3.1:-74567075 MS.gene06836:intron
GCGTGAAATGAGGGATTTGG+AGG 0.545654 3.1:-74568474 MS.gene06836:CDS
TCAACGTCTGAGGCTTCTTG+GGG 0.545879 3.1:-74566716 MS.gene06836:CDS
GCGAAGAGTGTATCATAAGA+TGG 0.548157 3.1:-74568120 MS.gene06836:CDS
GAGTTTCAAGCGTGAAATGA+GGG 0.552128 3.1:-74568483 MS.gene06836:CDS
ACTGTTGTCCAAATTCTCAC+TGG 0.555026 3.1:+74568736 None:intergenic
ATCCAAGCATGGTTCCAGAC+AGG 0.558907 3.1:+74567318 None:intergenic
GTTGTGTTGCAGAGGAAGAA+TGG 0.563277 3.1:-74568158 MS.gene06836:intron
TCATGTAGGTTCAACGTCTG+AGG 0.564696 3.1:-74566726 MS.gene06836:intron
AGAGTTTCAAGCGTGAAATG+AGG 0.568029 3.1:-74568484 MS.gene06836:CDS
GTTGTTGATTGCCGAGTATG+CGG 0.576812 3.1:-74567498 MS.gene06836:CDS
ATGGCGGTAGCTGAGAATGT+TGG 0.580311 3.1:-74568776 MS.gene06836:CDS
CTTTGAATCTATCTGTGGCG+AGG 0.582020 3.1:-74566910 MS.gene06836:intron
CACTTCTTTGAATCTATCTG+TGG 0.587202 3.1:-74566915 MS.gene06836:CDS
GTTGTCAAAGCTGAATCCTA+TGG 0.587744 3.1:-74568447 MS.gene06836:CDS
ATTTGGTTGATGGGTATGGT+GGG 0.591826 3.1:-74568517 MS.gene06836:CDS
AAAGCTGAATCCTATGGCTG+AGG 0.594772 3.1:-74568441 MS.gene06836:CDS
GGGATTACCATCATTCAACT+CGG 0.607758 3.1:-74566696 MS.gene06836:CDS
TGTTGATTGCCGAGTATGCG+GGG 0.611381 3.1:-74567496 MS.gene06836:CDS
TTTGATGAGCCATGAAACCA+TGG 0.614650 3.1:+74568576 None:intergenic
AAAGAGAAGAGATGATTCGG+AGG 0.615099 3.1:-74568088 MS.gene06836:CDS
AGTGTTCCAAATGGTAACCA+TGG 0.620845 3.1:-74568593 MS.gene06836:CDS
GCGGCTCTCTTTCTTAACTG+CGG 0.622650 3.1:-74567914 MS.gene06836:CDS
GGGTCAGATGCATGGAAATG+GGG 0.623897 3.1:-74568552 MS.gene06836:CDS
TGATAATTAGTAACCAGTGA+AGG 0.626417 3.1:+74568407 None:intergenic
GGCACAAATTCCTCAGCCAT+AGG 0.629252 3.1:+74568431 None:intergenic
CAATGGATAATATCCAAGCA+TGG 0.634411 3.1:+74567307 None:intergenic
TGTTTCATCGGACTCAACTG+AGG 0.647222 3.1:-74568711 MS.gene06836:CDS
TAATTAGTAACCAGTGAAGG+TGG 0.655408 3.1:+74568410 None:intergenic
ATTGATCACACCAACAACGT+TGG 0.675812 3.1:+74568631 None:intergenic
GGTTACTGAAGAGCAGCTGG+CGG 0.706094 3.1:-74567933 MS.gene06836:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTGTTTTAATTATTTTT+TGG - chr3.1:74568052-74568071 MS.gene06836:intron 10.0%
!!! GTAAAATATTTCCATTATTT+TGG - chr3.1:74568694-74568713 MS.gene06836:CDS 15.0%
!! ACATGAATAAACCAAAATAA+TGG + chr3.1:74568708-74568727 None:intergenic 20.0%
!! CAGAAAAGATAAAAAATATC+AGG + chr3.1:74568283-74568302 None:intergenic 20.0%
!!! AGTGTTTGACTATTTAATTT+TGG - chr3.1:74568663-74568682 MS.gene06836:CDS 20.0%
!!! ATATTTTTCAGTATCTGTTT+TGG - chr3.1:74568441-74568460 MS.gene06836:CDS 20.0%
!!! GAAGCATAAAATTGTTATTA+GGG + chr3.1:74567106-74567125 None:intergenic 20.0%
!!! TGAAGCATAAAATTGTTATT+AGG + chr3.1:74567107-74567126 None:intergenic 20.0%
!!! TTATTTTGGTTTATTCATGT+AGG - chr3.1:74568708-74568727 MS.gene06836:CDS 20.0%
!!! TTTATGCTTCAGAATAATTT+TGG - chr3.1:74567116-74567135 MS.gene06836:CDS 20.0%
! AAACTAAACACAATATCGAA+AGG + chr3.1:74567243-74567262 None:intergenic 25.0%
! AACAGATACTGAAAAATATC+AGG + chr3.1:74568440-74568459 None:intergenic 25.0%
! ACAGATACTGAAAAATATCA+GGG + chr3.1:74568439-74568458 None:intergenic 25.0%
! ATTTGTGCAATAAATTGTTC+TGG + chr3.1:74568363-74568382 None:intergenic 25.0%
! CGATAAATACACCAAAATAA+CGG + chr3.1:74568637-74568656 None:intergenic 25.0%
!! TAGTTTCCTTTTCTTAATGA+TGG - chr3.1:74567886-74567905 MS.gene06836:intron 25.0%
!!! AAGGATTGTTGTTTTTATGT+TGG - chr3.1:74567486-74567505 MS.gene06836:CDS 25.0%
!!! CGTTATTTTGGTGTATTTAT+CGG - chr3.1:74568635-74568654 MS.gene06836:CDS 25.0%
!!! GTTATTTTGGTGTATTTATC+GGG - chr3.1:74568636-74568655 MS.gene06836:CDS 25.0%
!!! GTTTGACTATTTAATTTTGG+AGG - chr3.1:74568666-74568685 MS.gene06836:CDS 25.0%
!!! TTATTTTGGTGTATTTATCG+GGG - chr3.1:74568637-74568656 MS.gene06836:CDS 25.0%
!!! TTGTTTTTATGTTGGAATCT+AGG - chr3.1:74567494-74567513 MS.gene06836:CDS 25.0%
AGAAAAGAGAAGAGATGATT+CGG - chr3.1:74567357-74567376 MS.gene06836:intron 30.0%
AGACATAAAACCGTTAATTC+AGG + chr3.1:74568084-74568103 None:intergenic 30.0%
AGTGTATCATAAGATGGATA+TGG - chr3.1:74567334-74567353 MS.gene06836:CDS 30.0%
CTAAGAAGAAAAATTACCCT+GGG + chr3.1:74568218-74568237 None:intergenic 30.0%
GACATAAAACCGTTAATTCA+GGG + chr3.1:74568083-74568102 None:intergenic 30.0%
TCTAAGAAGAAAAATTACCC+TGG + chr3.1:74568219-74568238 None:intergenic 30.0%
TGATAATTAGTAACCAGTGA+AGG + chr3.1:74567044-74567063 None:intergenic 30.0%
TTGAGCTAATTAACCATGTA+TGG - chr3.1:74567701-74567720 MS.gene06836:intron 30.0%
TTTGAACTTAGAATCTTGCT+TGG - chr3.1:74568406-74568425 MS.gene06836:intron 30.0%
! TAATGGACAGATTAACAGAA+GGG - chr3.1:74567172-74567191 MS.gene06836:intron 30.0%
! TCACTGGTTACTAATTATCA+TGG - chr3.1:74567044-74567063 MS.gene06836:intron 30.0%
! TGAGACATATTCCGTTATTT+TGG - chr3.1:74568623-74568642 MS.gene06836:CDS 30.0%
! TTTCCTTTTCTTAATGATGG+TGG - chr3.1:74567889-74567908 MS.gene06836:intron 30.0%
!! ATAATGGACAGATTAACAGA+AGG - chr3.1:74567171-74567190 MS.gene06836:intron 30.0%
!!! TTGCACGTGTATTGATTTTA+AGG - chr3.1:74567467-74567486 MS.gene06836:CDS 30.0%
AAAATATAGCCGTTTCTACC+TGG + chr3.1:74567560-74567579 None:intergenic 35.0%
AAACACAAACGACAATGCAA+CGG + chr3.1:74568041-74568060 None:intergenic 35.0%
AAATGGTAACCATGGTTTCA+TGG - chr3.1:74566863-74566882 MS.gene06836:intron 35.0%
AGAATCAGCATTTGGTTGAT+GGG - chr3.1:74566922-74566941 MS.gene06836:CDS 35.0%
ATGAAACCATGGTTACCATT+TGG + chr3.1:74566864-74566883 None:intergenic 35.0%
CAATGGATAATATCCAAGCA+TGG + chr3.1:74568144-74568163 None:intergenic 35.0%
CACTTCTTTGAATCTATCTG+TGG - chr3.1:74568533-74568552 MS.gene06836:CDS 35.0%
CTATAACAACACAAACGACA+AGG + chr3.1:74567869-74567888 None:intergenic 35.0%
GAAATACAGCATCGTTAGAA+AGG + chr3.1:74568311-74568330 None:intergenic 35.0%
GCTAATGCTACTGCTAATAA+TGG - chr3.1:74567155-74567174 MS.gene06836:intron 35.0%
GGCAAAAAAGTTGGATTAAC+AGG + chr3.1:74568197-74568216 None:intergenic 35.0%
TAATTAGTAACCAGTGAAGG+TGG + chr3.1:74567041-74567060 None:intergenic 35.0%
TTCGTTGAGTTTACTGATGA+AGG - chr3.1:74568001-74568020 MS.gene06836:intron 35.0%
TTCTTAGAGATTCCTATTGC+AGG - chr3.1:74568231-74568250 MS.gene06836:intron 35.0%
TTGTGGCTATTCATTGAACT+GGG - chr3.1:74568562-74568581 MS.gene06836:CDS 35.0%
TTTGTGGCTATTCATTGAAC+TGG - chr3.1:74568561-74568580 MS.gene06836:CDS 35.0%
! TGTTTTGTAGAACCTGCAAT+AGG + chr3.1:74568246-74568265 None:intergenic 35.0%
!! AACGGTTTTATGTCTACAGT+TGG - chr3.1:74568089-74568108 MS.gene06836:CDS 35.0%
!! TTCAGATTCTGATCGGTTTT+GGG + chr3.1:74566780-74566799 None:intergenic 35.0%
!!! TAATCCAACTTTTTTGCCCA+GGG - chr3.1:74568199-74568218 MS.gene06836:intron 35.0%
!!! TTAATCCAACTTTTTTGCCC+AGG - chr3.1:74568198-74568217 MS.gene06836:intron 35.0%
AACGAATGCAAACCGAAGAA+TGG + chr3.1:74567987-74568006 None:intergenic 40.0%
AACTACTCTTACGTGAGCAT+AGG - chr3.1:74567928-74567947 MS.gene06836:CDS 40.0%
ACAAATCTCGACAAGAAGGT+AGG - chr3.1:74568377-74568396 MS.gene06836:intron 40.0%
ACTGTTGTCCAAATTCTCAC+TGG + chr3.1:74566715-74566734 None:intergenic 40.0%
AGAGTTTCAAGCGTGAAATG+AGG - chr3.1:74566964-74566983 MS.gene06836:intron 40.0%
AGTGTTCCAAATGGTAACCA+TGG - chr3.1:74566855-74566874 MS.gene06836:intron 40.0%
ATGTGATAGAGCTCCATACA+TGG + chr3.1:74567717-74567736 None:intergenic 40.0%
ATTACCCTGGGCAAAAAAGT+TGG + chr3.1:74568206-74568225 None:intergenic 40.0%
ATTGATCACACCAACAACGT+TGG + chr3.1:74566820-74566839 None:intergenic 40.0%
ATTGATTGGAGCTCCATACA+TGG + chr3.1:74567811-74567830 None:intergenic 40.0%
CAACAAGACAGTGTTCCAAA+TGG - chr3.1:74566846-74566865 MS.gene06836:intron 40.0%
CAACACAAACGACAAGGTAA+CGG + chr3.1:74567863-74567882 None:intergenic 40.0%
CAGAATCAGCATTTGGTTGA+TGG - chr3.1:74566921-74566940 MS.gene06836:CDS 40.0%
CGATTCTTCCAGTGAGAATT+TGG - chr3.1:74566704-74566723 MS.gene06836:CDS 40.0%
GAACTTAGAATCTTGCTTGG+AGG - chr3.1:74568409-74568428 MS.gene06836:intron 40.0%
GAGTTTCAAGCGTGAAATGA+GGG - chr3.1:74566965-74566984 MS.gene06836:intron 40.0%
GCAAACCGAAGAATGGAATT+GGG + chr3.1:74567980-74567999 None:intergenic 40.0%
GGGATTACCATCATTCAACT+CGG - chr3.1:74568752-74568771 MS.gene06836:CDS 40.0%
GGTCCACCATCATTAAGAAA+AGG + chr3.1:74567895-74567914 None:intergenic 40.0%
GGTTTCATGGCTCATCAAAT+GGG - chr3.1:74566876-74566895 MS.gene06836:intron 40.0%
GTTGTCAAAGCTGAATCCTA+TGG - chr3.1:74567001-74567020 MS.gene06836:intron 40.0%
TAACGGAACACGTGTATCTA+AGG + chr3.1:74567846-74567865 None:intergenic 40.0%
TCTGACATTGATCAACAGGT+AGG - chr3.1:74567395-74567414 MS.gene06836:intron 40.0%
TGATTGATGTTGTGTTGCAG+AGG - chr3.1:74567282-74567301 MS.gene06836:CDS 40.0%
TGCAAACCGAAGAATGGAAT+TGG + chr3.1:74567981-74568000 None:intergenic 40.0%
TGGTTTCATGGCTCATCAAA+TGG - chr3.1:74566875-74566894 MS.gene06836:intron 40.0%
TGTGTCTGACATTGATCAAC+AGG - chr3.1:74567391-74567410 MS.gene06836:intron 40.0%
TTGCACAAATCTCGACAAGA+AGG - chr3.1:74568373-74568392 MS.gene06836:intron 40.0%
TTGGCGTTTCCCTGAATTAA+CGG - chr3.1:74568071-74568090 MS.gene06836:CDS 40.0%
TTTGATGAGCCATGAAACCA+TGG + chr3.1:74566875-74566894 None:intergenic 40.0%
! AAAGAGAAGAGATGATTCGG+AGG - chr3.1:74567360-74567379 MS.gene06836:intron 40.0%
! AAGCAATCCGAGTTGAATGA+TGG + chr3.1:74568762-74568781 None:intergenic 40.0%
! GAGTAGTTGACTTAGTAACG+TGG + chr3.1:74567916-74567935 None:intergenic 40.0%
! GCGAAGAGTGTATCATAAGA+TGG - chr3.1:74567328-74567347 MS.gene06836:CDS 40.0%
! GTTGGTGTTCAGATTCTGAT+CGG + chr3.1:74566787-74566806 None:intergenic 40.0%
! TTATGTCTACAGTTGGTGCT+AGG - chr3.1:74568096-74568115 MS.gene06836:CDS 40.0%
!! ACCAACAACGTTGGTGTTAA+CGG + chr3.1:74566811-74566830 None:intergenic 40.0%
!! ATTTGGTTGATGGGTATGGT+GGG - chr3.1:74566931-74566950 MS.gene06836:CDS 40.0%
!! CTCACTGGAAGAATCGATTT+TGG + chr3.1:74566700-74566719 None:intergenic 40.0%
!! GGACAACAGTGTTGTTTCAT+CGG - chr3.1:74566725-74566744 MS.gene06836:intron 40.0%
!! GTTCAGATTCTGATCGGTTT+TGG + chr3.1:74566781-74566800 None:intergenic 40.0%
!! TATGTCTACAGTTGGTGCTA+GGG - chr3.1:74568097-74568116 MS.gene06836:CDS 40.0%
!! TTCAACTCGGATTGCTTTTG+TGG - chr3.1:74568765-74568784 MS.gene06836:CDS 40.0%
!!! ATTCTGATCGGTTTTGGGTT+TGG + chr3.1:74566775-74566794 None:intergenic 40.0%
AAAGCTGAATCCTATGGCTG+AGG - chr3.1:74567007-74567026 MS.gene06836:intron 45.0%
ACCGTTAACACCAACGTTGT+TGG - chr3.1:74566807-74566826 MS.gene06836:intron 45.0%
ATCTCGACAAGAAGGTAGGT+TGG - chr3.1:74568381-74568400 MS.gene06836:intron 45.0%
ATGGGTCAGATGCATGGAAA+TGG - chr3.1:74566894-74566913 MS.gene06836:intron 45.0%
CAAGCGTGAAATGAGGGATT+TGG - chr3.1:74566971-74566990 MS.gene06836:intron 45.0%
CATCAAATGGGTCAGATGCA+TGG - chr3.1:74566888-74566907 MS.gene06836:intron 45.0%
CTTTGAATCTATCTGTGGCG+AGG - chr3.1:74568538-74568557 MS.gene06836:CDS 45.0%
GGCTGCGTCTTACTATTGAT+TGG + chr3.1:74567825-74567844 None:intergenic 45.0%
GGGATCCCAATTCCATTCTT+CGG - chr3.1:74567972-74567991 MS.gene06836:intron 45.0%
GGTGCAATAGCAGTCTTTGA+AGG + chr3.1:74568176-74568195 None:intergenic 45.0%
GTTGTGTTGCAGAGGAAGAA+TGG - chr3.1:74567290-74567309 MS.gene06836:CDS 45.0%
TATCATGGCTACTTAGCTGC+TGG - chr3.1:74567059-74567078 MS.gene06836:intron 45.0%
TCATGTAGGTTCAACGTCTG+AGG - chr3.1:74568722-74568741 MS.gene06836:CDS 45.0%
TCTCGACAAGAAGGTAGGTT+GGG - chr3.1:74568382-74568401 MS.gene06836:intron 45.0%
TGGGGTTCAGAATCAGCATT+TGG - chr3.1:74566914-74566933 MS.gene06836:CDS 45.0%
TGGGTCAGATGCATGGAAAT+GGG - chr3.1:74566895-74566914 MS.gene06836:intron 45.0%
TGTTTCATCGGACTCAACTG+AGG - chr3.1:74566737-74566756 MS.gene06836:intron 45.0%
TTTGAAGGCAGCACTCTCAA+TGG + chr3.1:74568161-74568180 None:intergenic 45.0%
! GTTGTTGATTGCCGAGTATG+CGG - chr3.1:74567950-74567969 MS.gene06836:intron 45.0%
! TTCAACGTCTGAGGCTTCTT+GGG - chr3.1:74568731-74568750 MS.gene06836:CDS 45.0%
! TTGATGGGTATGGTGGGAAT+GGG - chr3.1:74566937-74566956 MS.gene06836:CDS 45.0%
! TTGTTGATTGCCGAGTATGC+GGG - chr3.1:74567951-74567970 MS.gene06836:intron 45.0%
!! AACGTTGGTGTTAACGGTGT+TGG + chr3.1:74566805-74566824 None:intergenic 45.0%
!! CAGCATTTGGTTGATGGGTA+TGG - chr3.1:74566927-74566946 MS.gene06836:CDS 45.0%
!! CATTTGGTTGATGGGTATGG+TGG - chr3.1:74566930-74566949 MS.gene06836:CDS 45.0%
AATTGGGATCCCCGCATACT+CGG + chr3.1:74567964-74567983 None:intergenic 50.0%
ATCCAAGCATGGTTCCAGAC+AGG + chr3.1:74568133-74568152 None:intergenic 50.0%
ATGGCGGTAGCTGAGAATGT+TGG - chr3.1:74566672-74566691 MS.gene06836:CDS 50.0%
CTAGGTTACTGAAGAGCAGC+TGG - chr3.1:74567512-74567531 MS.gene06836:intron 50.0%
GCGGCTCTCTTTCTTAACTG+CGG - chr3.1:74567534-74567553 MS.gene06836:intron 50.0%
GCGTGAAATGAGGGATTTGG+AGG - chr3.1:74566974-74566993 MS.gene06836:intron 50.0%
GGAATTTGTGCCACCTTCAC+TGG - chr3.1:74567028-74567047 MS.gene06836:intron 50.0%
GGCACAAATTCCTCAGCCAT+AGG + chr3.1:74567020-74567039 None:intergenic 50.0%
GGGTAACCAAACCCAGCATT+AGG + chr3.1:74567086-74567105 None:intergenic 50.0%
GGGTCAGATGCATGGAAATG+GGG - chr3.1:74566896-74566915 MS.gene06836:intron 50.0%
TAACTGCGGCCAGGTAGAAA+CGG - chr3.1:74567548-74567567 MS.gene06836:intron 50.0%
TAGCTGCTGGACCTAATGCT+GGG - chr3.1:74567072-74567091 MS.gene06836:intron 50.0%
TCTATCTGTGGCGAGGTTTG+TGG - chr3.1:74568545-74568564 MS.gene06836:CDS 50.0%
TCTCTTTCTTAACTGCGGCC+AGG - chr3.1:74567539-74567558 MS.gene06836:intron 50.0%
TTAGCTGCTGGACCTAATGC+TGG - chr3.1:74567071-74567090 MS.gene06836:intron 50.0%
! AACCTGTCTGGAACCATGCT+TGG - chr3.1:74568128-74568147 MS.gene06836:CDS 50.0%
! GTTCAACGTCTGAGGCTTCT+TGG - chr3.1:74568730-74568749 MS.gene06836:CDS 50.0%
! GTTGATGGGTATGGTGGGAA+TGG - chr3.1:74566936-74566955 MS.gene06836:CDS 50.0%
! TCAACGTCTGAGGCTTCTTG+GGG - chr3.1:74568732-74568751 MS.gene06836:CDS 50.0%
! TGATGGGTATGGTGGGAATG+GGG - chr3.1:74566938-74566957 MS.gene06836:CDS 50.0%
! TGTTGATTGCCGAGTATGCG+GGG - chr3.1:74567952-74567971 MS.gene06836:intron 50.0%
GCTGGACCTAATGCTGGGTT+TGG - chr3.1:74567077-74567096 MS.gene06836:CDS 55.0%
GGTTACTGAAGAGCAGCTGG+CGG - chr3.1:74567515-74567534 MS.gene06836:intron 55.0%
! AGGGCTGCTTTGAACCTGTC+TGG - chr3.1:74568116-74568135 MS.gene06836:CDS 55.0%
! GATGGGTATGGTGGGAATGG+GGG - chr3.1:74566939-74566958 MS.gene06836:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 74566672 74568798 74566672 ID=MS.gene06836
chr3.1 mRNA 74566672 74568798 74566672 ID=MS.gene06836.t1;Parent=MS.gene06836
chr3.1 exon 74568421 74568798 74568421 ID=MS.gene06836.t1.exon1;Parent=MS.gene06836.t1
chr3.1 CDS 74568421 74568798 74568421 ID=cds.MS.gene06836.t1;Parent=MS.gene06836.t1
chr3.1 exon 74568058 74568168 74568058 ID=MS.gene06836.t1.exon2;Parent=MS.gene06836.t1
chr3.1 CDS 74568058 74568168 74568058 ID=cds.MS.gene06836.t1;Parent=MS.gene06836.t1
chr3.1 exon 74567910 74567954 74567910 ID=MS.gene06836.t1.exon3;Parent=MS.gene06836.t1
chr3.1 CDS 74567910 74567954 74567910 ID=cds.MS.gene06836.t1;Parent=MS.gene06836.t1
chr3.1 exon 74567448 74567520 74567448 ID=MS.gene06836.t1.exon4;Parent=MS.gene06836.t1
chr3.1 CDS 74567448 74567520 74567448 ID=cds.MS.gene06836.t1;Parent=MS.gene06836.t1
chr3.1 exon 74567250 74567362 74567250 ID=MS.gene06836.t1.exon5;Parent=MS.gene06836.t1
chr3.1 CDS 74567250 74567362 74567250 ID=cds.MS.gene06836.t1;Parent=MS.gene06836.t1
chr3.1 exon 74567076 74567135 74567076 ID=MS.gene06836.t1.exon6;Parent=MS.gene06836.t1
chr3.1 CDS 74567076 74567135 74567076 ID=cds.MS.gene06836.t1;Parent=MS.gene06836.t1
chr3.1 exon 74566911 74566958 74566911 ID=MS.gene06836.t1.exon7;Parent=MS.gene06836.t1
chr3.1 CDS 74566911 74566958 74566911 ID=cds.MS.gene06836.t1;Parent=MS.gene06836.t1
chr3.1 exon 74566672 74566740 74566672 ID=MS.gene06836.t1.exon8;Parent=MS.gene06836.t1
chr3.1 CDS 74566672 74566740 74566672 ID=cds.MS.gene06836.t1;Parent=MS.gene06836.t1
Gene Sequence

>MS.gene06836

ATGGCGGTAGCTGAGAATGTTGGAACCAAAATCGATTCTTCCAGTGAGAATTTGGACAACAGTGTTGTTTCATCGGACTCAACTGAGGTTGTTGAGAAATCCAAACCCAAAACCGATCAGAATCTGAACACCAACACCGTTAACACCAACGTTGTTGGTGTGATCAATCATCAACAACAAGACAGTGTTCCAAATGGTAACCATGGTTTCATGGCTCATCAAATGGGTCAGATGCATGGAAATGGGGTTCAGAATCAGCATTTGGTTGATGGGTATGGTGGGAATGGGGGTGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAGGAGTTGTTGTCAAAGCTGAATCCTATGGCTGAGGAATTTGTGCCACCTTCACTGGTTACTAATTATCATGGCTACTTAGCTGCTGGACCTAATGCTGGGTTTGGTTACCCTAATAACAATTTTATGCTTCAGAATAATTTTGGAAATGCTAATGCTAATGCTAATGCTACTGCTAATAATGGACAGATTAACAGAAGGGTATGAATATTTTGTTTGATCTCTTTTTTATTCATACGATTTTTTACCTTTCGATATTGTGTTTAGTTTGTGTATTAATACAATATATTGATTGATGTTGTGTTGCAGAGGAAGAATGGCTATAATAATGCGAAGCGAAGAGTGTATCATAAGATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACTGTTTATGTGTCTGACATTGATCAACAGGTAGGAATTTTAGCTGTCTTGTTGAATCTATCATTTCAGCTTGCTTGCAATGTTTTGCACGTGTATTGATTTTAAGGATTGTTGTTTTTATGTTGGAATCTAGGTTACTGAAGAGCAGCTGGCGGCTCTCTTTCTTAACTGCGGCCAGGTAGAAACGGCTATATTTTGTATATGATGTGTATTATTTTTCTTTATAGAAATGATATGATGTACAGTAATAACTATCACTTGAAAAAGCAACGTAATGCAACGTATCTGTTTTGAACGAATCGCGACAAAGTTGTACTTTTGAGCTAATTAACCATGTATGGAGCTCTATCACATGAAAATGTAACGTAATGCAACGTATCTGTTTTGAACGAATCGCGACAAAGTTGTACTTTTGAGCTAATTAACCATGTATGGAGCTCCAATCAATAGTAAGACGCAGCCTTAGATACACGTGTTCCGTTACCTTGTCGTTTGTGTTGTTATAGTTTCCTTTTCTTAATGATGGTGGACCACGTTACTAAGTCAACTACTCTTACGTGAGCATAGGTTGTTGATTGCCGAGTATGCGGGGATCCCAATTCCATTCTTCGGTTTGCATTCGTTGAGTTTACTGATGAAGGTGATATCACGTGTTCCGTTGCATTGTCGTTTGTGTTTTAATTATTTTTTGGCGTTTCCCTGAATTAACGGTTTTATGTCTACAGTTGGTGCTAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTATCCATTGAGAGTGCTGCCTTCAAAGACTGCTATTGCACCTGTTAATCCAACTTTTTTGCCCAGGGTAATTTTTCTTCTTAGAGATTCCTATTGCAGGTTCTACAAAACAATTTATCAGAGTGTCCTGATATTTTTTATCTTTTCTGTTCTACCTTTCTAACGATGCTGTATTTCTCAGTCTGAAGATGAAAGAGAGATGTGCACCAGAACAATTTATTGCACAAATCTCGACAAGAAGGTAGGTTGGGATTTGAACTTAGAATCTTGCTTGGAGGAACTCCCTGATATTTTTCAGTATCTGTTTTGGAGCAATCGTATCTCGTAATTCTTATTCTTCTTTTCTTGTTATATGCAGCTTACTCAAGCAGATGTCAAGCACTTCTTTGAATCTATCTGTGGCGAGGTTTGTGGCTATTCATTGAACTGGGCTTCTAGTTTTTATTGTTTCTTAAATTTAACGATCTTATGAGACATATTCCGTTATTTTGGTGTATTTATCGGGGTTTAGTGTTTGACTATTTAATTTTGGAGGAATTTGTAAAATATTTCCATTATTTTGGTTTATTCATGTAGGTTCAACGTCTGAGGCTTCTTGGGGATTACCATCATTCAACTCGGATTGCTTTTGTGGAGTTTGCAGTG

Protein sequence

>MS.gene06836.t1

MAVAENVGTKIDSSSENLDNSVVSSDSTEVVEKSKPKTDQNLNTNTVNTNVVGVINHQQQDSVPNGNHGFMAHQMGQMHGNGVQNQHLVDGYGGNGGESFKREMRDLEELLSKLNPMAEEFVPPSLRKNGYNNAKRRVYHKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEVGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFAV