Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33788.t1 | XP_013457051.1 | 94.7 | 491 | 26 | 0 | 1 | 491 | 1 | 491 | 9.40E-266 | 925.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33788.t1 | Q9ZPH2 | 73.0 | 493 | 126 | 4 | 1 | 491 | 1 | 488 | 6.7e-204 | 711.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33788.t1 | G7ZZ90 | 94.7 | 491 | 26 | 0 | 1 | 491 | 1 | 491 | 6.8e-266 | 925.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene33788 | 0.852381 | 4.79E-61 | -1.69E-46 |
| MS.gene050752 | MS.gene33788 | 0.806149 | 9.46E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene33788 | 0.815653 | 8.28E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene33788 | 0.817473 | 3.24E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene33788 | 0.811506 | 6.77E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene33788 | 0.827919 | 1.20E-54 | -1.69E-46 |
| MS.gene051903 | MS.gene33788 | 0.817722 | 2.85E-52 | -1.69E-46 |
| MS.gene052296 | MS.gene33788 | 0.81894 | 1.51E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene33788 | 0.911887 | 3.65E-83 | -1.69E-46 |
| MS.gene052818 | MS.gene33788 | -0.820082 | 8.28E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene33788 | 0.801157 | 1.03E-48 | -1.69E-46 |
| MS.gene053058 | MS.gene33788 | 0.806538 | 7.84E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene33788 | 0.809983 | 1.44E-50 | -1.69E-46 |
| MS.gene055424 | MS.gene33788 | 0.800516 | 1.39E-48 | -1.69E-46 |
| MS.gene057094 | MS.gene33788 | 0.812445 | 4.22E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene33788 | 0.816197 | 6.26E-52 | -1.69E-46 |
| MS.gene05781 | MS.gene33788 | 0.824962 | 6.07E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene33788 | 0.83 | 3.76E-55 | -1.69E-46 |
| MS.gene058074 | MS.gene33788 | 0.838361 | 3.01E-57 | -1.69E-46 |
| MS.gene06011 | MS.gene33788 | 0.805129 | 1.55E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene33788 | 0.800198 | 1.61E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33788.t1 | MTR_4g088905 | 98.371 | 491 | 8 | 0 | 1 | 491 | 1 | 491 | 0.0 | 987 |
| MS.gene33788.t1 | MTR_2g103130 | 44.000 | 125 | 70 | 0 | 259 | 383 | 29 | 153 | 6.83e-30 | 114 |
| MS.gene33788.t1 | MTR_2g103130 | 46.535 | 101 | 54 | 0 | 154 | 254 | 53 | 153 | 7.17e-29 | 112 |
| MS.gene33788.t1 | MTR_2g103130 | 47.826 | 92 | 47 | 1 | 400 | 491 | 63 | 153 | 5.07e-25 | 101 |
| MS.gene33788.t1 | MTR_7g079520 | 49.091 | 110 | 55 | 1 | 277 | 386 | 71 | 179 | 4.12e-29 | 113 |
| MS.gene33788.t1 | MTR_7g079520 | 45.545 | 101 | 55 | 0 | 151 | 251 | 74 | 174 | 2.92e-27 | 108 |
| MS.gene33788.t1 | MTR_7g079520 | 43.590 | 117 | 63 | 2 | 370 | 486 | 59 | 172 | 3.27e-26 | 105 |
| MS.gene33788.t1 | MTR_4g016930 | 49.123 | 114 | 51 | 2 | 147 | 253 | 183 | 296 | 8.80e-27 | 110 |
| MS.gene33788.t1 | MTR_4g016930 | 33.854 | 192 | 103 | 10 | 312 | 485 | 106 | 291 | 1.76e-21 | 95.1 |
| MS.gene33788.t1 | MTR_4g016930 | 40.385 | 104 | 59 | 1 | 277 | 377 | 188 | 291 | 1.78e-19 | 89.4 |
| MS.gene33788.t1 | MTR_8g107460 | 33.333 | 111 | 70 | 1 | 3 | 109 | 254 | 364 | 1.29e-13 | 72.8 |
| MS.gene33788.t1 | MTR_2g010750 | 33.708 | 89 | 59 | 0 | 14 | 102 | 24 | 112 | 1.56e-13 | 67.8 |
| MS.gene33788.t1 | MTR_1g023140 | 31.132 | 106 | 69 | 1 | 3 | 104 | 6 | 111 | 2.14e-12 | 64.3 |
| MS.gene33788.t1 | MTR_7g009070 | 34.568 | 81 | 53 | 0 | 24 | 104 | 51 | 131 | 2.23e-12 | 64.7 |
| MS.gene33788.t1 | MTR_2g082590 | 34.831 | 89 | 58 | 0 | 23 | 111 | 34 | 122 | 2.73e-12 | 63.9 |
| MS.gene33788.t1 | MTR_3g112410 | 33.735 | 83 | 55 | 0 | 24 | 106 | 31 | 113 | 6.14e-12 | 62.8 |
| MS.gene33788.t1 | MTR_2g082590 | 35.443 | 79 | 51 | 0 | 24 | 102 | 48 | 126 | 4.32e-11 | 61.2 |
| MS.gene33788.t1 | MTR_8g005320 | 27.778 | 108 | 74 | 2 | 2 | 105 | 25 | 132 | 5.41e-11 | 60.8 |
| MS.gene33788.t1 | MTR_4g081380 | 30.208 | 96 | 67 | 0 | 16 | 111 | 27 | 122 | 6.70e-11 | 60.1 |
| MS.gene33788.t1 | MTR_7g073680 | 28.571 | 112 | 76 | 1 | 2 | 109 | 23 | 134 | 7.30e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33788.t1 | AT4G04950 | 73.022 | 493 | 126 | 4 | 1 | 491 | 1 | 488 | 0.0 | 728 |
| MS.gene33788.t1 | AT4G32580 | 64.242 | 165 | 48 | 3 | 1 | 164 | 1 | 155 | 1.32e-66 | 211 |
| MS.gene33788.t1 | AT3G54900 | 57.843 | 102 | 43 | 0 | 278 | 379 | 64 | 165 | 3.02e-32 | 121 |
| MS.gene33788.t1 | AT3G54900 | 52.000 | 100 | 48 | 0 | 151 | 250 | 66 | 165 | 5.74e-29 | 112 |
| MS.gene33788.t1 | AT3G54900 | 52.632 | 95 | 44 | 1 | 392 | 486 | 71 | 164 | 4.66e-26 | 104 |
| MS.gene33788.t1 | AT3G15660 | 45.370 | 108 | 59 | 0 | 147 | 254 | 56 | 163 | 1.34e-28 | 111 |
| MS.gene33788.t1 | AT3G15660 | 46.154 | 104 | 56 | 0 | 280 | 383 | 60 | 163 | 5.35e-28 | 110 |
| MS.gene33788.t1 | AT3G15660 | 42.157 | 102 | 58 | 1 | 390 | 491 | 63 | 163 | 1.51e-24 | 100 |
| MS.gene33788.t1 | AT3G15660 | 45.370 | 108 | 59 | 0 | 147 | 254 | 56 | 163 | 1.34e-28 | 111 |
| MS.gene33788.t1 | AT3G15660 | 46.154 | 104 | 56 | 0 | 280 | 383 | 60 | 163 | 5.35e-28 | 110 |
| MS.gene33788.t1 | AT3G15660 | 42.157 | 102 | 58 | 1 | 390 | 491 | 63 | 163 | 1.51e-24 | 100 |
| MS.gene33788.t1 | AT2G38270 | 46.018 | 113 | 54 | 2 | 147 | 252 | 180 | 292 | 1.14e-26 | 109 |
| MS.gene33788.t1 | AT2G38270 | 46.078 | 102 | 51 | 2 | 392 | 490 | 193 | 293 | 2.80e-24 | 103 |
| MS.gene33788.t1 | AT2G38270 | 41.284 | 109 | 61 | 1 | 277 | 382 | 185 | 293 | 3.03e-22 | 97.4 |
| MS.gene33788.t1 | AT3G17880 | 33.636 | 110 | 69 | 1 | 3 | 108 | 263 | 372 | 6.45e-14 | 73.6 |
| MS.gene33788.t1 | AT3G17880 | 33.636 | 110 | 69 | 1 | 3 | 108 | 270 | 379 | 6.74e-14 | 73.6 |
| MS.gene33788.t1 | AT1G11530 | 38.750 | 80 | 49 | 0 | 23 | 102 | 26 | 105 | 1.04e-13 | 68.2 |
| MS.gene33788.t1 | AT3G56420 | 36.170 | 94 | 60 | 0 | 13 | 106 | 54 | 147 | 7.37e-13 | 66.6 |
| MS.gene33788.t1 | AT3G56420 | 36.170 | 94 | 60 | 0 | 13 | 106 | 54 | 147 | 7.37e-13 | 66.6 |
| MS.gene33788.t1 | AT3G56420 | 36.170 | 94 | 60 | 0 | 13 | 106 | 54 | 147 | 7.37e-13 | 66.6 |
| MS.gene33788.t1 | AT2G40790 | 33.333 | 96 | 64 | 0 | 11 | 106 | 52 | 147 | 2.19e-12 | 65.5 |
| MS.gene33788.t1 | AT2G40790 | 33.333 | 96 | 64 | 0 | 11 | 106 | 52 | 147 | 2.19e-12 | 65.5 |
| MS.gene33788.t1 | AT1G19730 | 33.333 | 96 | 63 | 1 | 13 | 107 | 20 | 115 | 2.78e-11 | 61.2 |
| MS.gene33788.t1 | AT1G45145 | 27.778 | 108 | 69 | 1 | 5 | 112 | 20 | 118 | 3.17e-11 | 60.8 |
| MS.gene33788.t1 | AT3G51030 | 30.435 | 92 | 64 | 0 | 13 | 104 | 20 | 111 | 3.30e-11 | 60.8 |
Find 131 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGGTGGTGCTTCACTTC+TGG | 0.087525 | 4.4:+23832229 | MS.gene33788:CDS |
| CGATCTTCAATGGTCTCTTT+TGG | 0.228425 | 4.4:-23834702 | None:intergenic |
| TCCGGTGGTGCTTCACTTCT+GGG | 0.239526 | 4.4:+23832230 | MS.gene33788:CDS |
| TTTCTGCTAAATCCACATTT+TGG | 0.245986 | 4.4:-23834078 | None:intergenic |
| TGAGGTGAGACAGGGGATTA+AGG | 0.268053 | 4.4:+23834875 | MS.gene33788:CDS |
| GCATGAGAGTGGGGAGTTAA+AGG | 0.272046 | 4.4:+23834266 | MS.gene33788:CDS |
| CTGGAAAGCTTGGTCAATTC+AGG | 0.285616 | 4.4:+23834405 | MS.gene33788:CDS |
| GAGGAGGGTGTGGTGGATTT+TGG | 0.308068 | 4.4:+23834828 | MS.gene33788:CDS |
| CCCTCATACCCATTTCTTAA+GGG | 0.316341 | 4.4:+23832314 | MS.gene33788:CDS |
| GATATATAGTTGAGGATAAC+TGG | 0.318174 | 4.4:-23834589 | None:intergenic |
| GAAACAAATATAACAGATTC+AGG | 0.318310 | 4.4:+23834324 | MS.gene33788:CDS |
| AAACCGCATCTTGGAGCATC+TGG | 0.332380 | 4.4:-23834777 | None:intergenic |
| AAGGAAGAGAAGGTTAAGTT+TGG | 0.337919 | 4.4:+23834117 | MS.gene33788:CDS |
| AAGTGATGATGAGGTGAGAC+AGG | 0.342056 | 4.4:+23834866 | MS.gene33788:CDS |
| GGATTAAGGTATTCTCAAAT+TGG | 0.345844 | 4.4:+23834889 | MS.gene33788:CDS |
| TCCCTCATACCCATTTCTTA+AGG | 0.350830 | 4.4:+23832313 | MS.gene33788:CDS |
| GAAGAGTTGGTCCATGTGTT+TGG | 0.361641 | 4.4:-23832271 | None:intergenic |
| ATTATGGAGCTGCGAAATAA+TGG | 0.375569 | 4.4:+23834966 | MS.gene33788:CDS |
| CTGAGGAAATGTGGGCCAAT+TGG | 0.383188 | 4.4:-23834193 | None:intergenic |
| AAAACCGAACCCTTAAGAAA+TGG | 0.386272 | 4.4:-23832323 | None:intergenic |
| ACCTTGTTGGCTAAACTTGA+TGG | 0.387462 | 4.4:-23833823 | None:intergenic |
| TTTCTTCAAACGATCTTCAA+TGG | 0.395624 | 4.4:-23834712 | None:intergenic |
| CTCAGTTATGCTGTTTATGA+AGG | 0.400437 | 4.4:+23834428 | MS.gene33788:CDS |
| GACTCAAGGTTTATTCAAAC+TGG | 0.401770 | 4.4:+23834565 | MS.gene33788:CDS |
| GCCGCTTCTCCTGCTAGTCT+TGG | 0.404417 | 4.4:+23833880 | MS.gene33788:CDS |
| CAGAAAACTTTACATGAGAA+AGG | 0.407265 | 4.4:+23834672 | MS.gene33788:CDS |
| AAACCACACTTAGGTTCATC+TGG | 0.410689 | 4.4:-23834456 | None:intergenic |
| TACTGCAAAGGAGAACTTGT+TGG | 0.433798 | 4.4:+23834219 | MS.gene33788:CDS |
| CCCTTCATGAAGAGCATCAC+AGG | 0.434696 | 4.4:-23834750 | None:intergenic |
| AGGTGGTTGTGATATCATTA+TGG | 0.435007 | 4.4:+23834950 | MS.gene33788:CDS |
| AATAAACCTTGAGTCCTTGT+CGG | 0.438536 | 4.4:-23834557 | None:intergenic |
| CCCTGTGATGCTCTTCATGA+AGG | 0.447763 | 4.4:+23834749 | MS.gene33788:CDS |
| CCGCTTCTCCTGCTAGTCTT+GGG | 0.449817 | 4.4:+23833881 | MS.gene33788:CDS |
| AGCCTCTCGGCTGGAAAGCT+TGG | 0.460278 | 4.4:+23834395 | MS.gene33788:CDS |
| ACCCTTAAGAAATGGGTATG+AGG | 0.465816 | 4.4:-23832315 | None:intergenic |
| AGAAAACTTTACATGAGAAA+GGG | 0.467284 | 4.4:+23834673 | MS.gene33788:CDS |
| AAACCGAACCCTTAAGAAAT+GGG | 0.473857 | 4.4:-23832322 | None:intergenic |
| TTATCCTCAACTATATATCA+AGG | 0.480228 | 4.4:+23834593 | MS.gene33788:CDS |
| TGAGTACAAATTTAGCCTCT+CGG | 0.483522 | 4.4:+23834382 | MS.gene33788:CDS |
| TTCAGTTGACTACTAAGCCC+TGG | 0.486626 | 4.4:-23833988 | None:intergenic |
| TCGAGAGAAAATGGGTGGTT+CGG | 0.487809 | 4.4:+23832155 | None:intergenic |
| GGTGGTTCGTGGCGGTTCTC+CGG | 0.491409 | 4.4:+23832212 | MS.gene33788:CDS |
| CGCCCTTCGAGAGGAGGGTG+TGG | 0.494304 | 4.4:+23834818 | MS.gene33788:CDS |
| CTGGAACTAAAACCGCATCT+TGG | 0.495657 | 4.4:-23834786 | None:intergenic |
| GCTAGTCTTGGGATGGCCGC+AGG | 0.498693 | 4.4:+23833892 | MS.gene33788:CDS |
| AACCTAAGTGTGGTTTCAGC+AGG | 0.498764 | 4.4:+23834463 | MS.gene33788:CDS |
| AACCGCATCTTGGAGCATCT+GGG | 0.499723 | 4.4:-23834776 | None:intergenic |
| CGTGAATTCAAAGTCGGAGT+TGG | 0.501506 | 4.4:+23832185 | MS.gene33788:CDS |
| TGCTTCACTTCTGGGCGTCA+TGG | 0.501679 | 4.4:+23832238 | MS.gene33788:CDS |
| GAATAAGCCTCGGATATCTC+TGG | 0.508311 | 4.4:-23832452 | None:intergenic |
| GCGGCCATCCCAAGACTAGC+AGG | 0.516474 | 4.4:-23833889 | None:intergenic |
| TGTTATATTTGTTTCATCAA+CGG | 0.521323 | 4.4:-23834316 | None:intergenic |
| GAAGAGCATCACAGGGGAAG+AGG | 0.521960 | 4.4:-23834742 | None:intergenic |
| TACAAATTTAGCCTCTCGGC+TGG | 0.523434 | 4.4:+23834386 | MS.gene33788:CDS |
| CCTTTCATGAAAAGCAAGAC+AGG | 0.524095 | 4.4:-23834042 | None:intergenic |
| GCCCAGAAGTGAAGCACCAC+CGG | 0.524542 | 4.4:-23832231 | None:intergenic |
| TCCATCAAGTTTAGCCAACA+AGG | 0.525625 | 4.4:+23833822 | MS.gene33788:CDS |
| TTCTCCTGCTAGTCTTGGGA+TGG | 0.527299 | 4.4:+23833885 | MS.gene33788:CDS |
| AGATTTAGAGATGCCACCCT+TGG | 0.527838 | 4.4:-23834352 | None:intergenic |
| TGGCTAAGTGAGAGAAGAGT+TGG | 0.528504 | 4.4:-23832284 | None:intergenic |
| GTAGCAGGCTCAATTAACTC+TGG | 0.529527 | 4.4:+23833853 | MS.gene33788:CDS |
| AACAAGGTTTCAAAAGTAGC+AGG | 0.531530 | 4.4:+23833838 | MS.gene33788:CDS |
| TCGAAGGGCGTTTACAACTC+TGG | 0.534132 | 4.4:-23834805 | None:intergenic |
| CCCTTAAGAAATGGGTATGA+GGG | 0.534349 | 4.4:-23832314 | None:intergenic |
| GCAGTAAAGCTGAGGAAATG+TGG | 0.537101 | 4.4:-23834202 | None:intergenic |
| TTTCCTCAGCTTTACTGCAA+AGG | 0.540810 | 4.4:+23834207 | MS.gene33788:CDS |
| AGAATGTCAAAACTCTCAAA+CGG | 0.542425 | 4.4:-23834519 | None:intergenic |
| CTCGGATTCAGAGGTTCGTG+AGG | 0.545103 | 4.4:+23834155 | MS.gene33788:CDS |
| TACTACAAAGGTGAGCTGAT+AGG | 0.545331 | 4.4:+23834930 | MS.gene33788:CDS |
| TTCAAAGTCGGAGTTGGATG+AGG | 0.547629 | 4.4:+23832191 | MS.gene33788:CDS |
| CCTGTGATGCTCTTCATGAA+GGG | 0.548900 | 4.4:+23834750 | MS.gene33788:CDS |
| GGGTGGCATCTCTAAATCTA+CGG | 0.552243 | 4.4:+23834356 | MS.gene33788:CDS |
| GAGTTGGATGAGGTGGTTCG+TGG | 0.555304 | 4.4:+23832201 | MS.gene33788:CDS |
| CAATTGCTATGCATGAGAGT+GGG | 0.557425 | 4.4:+23834256 | MS.gene33788:CDS |
| TGCAAAGGAGAACTTGTTGG+CGG | 0.559580 | 4.4:+23834222 | MS.gene33788:CDS |
| TGGCAAGACTGTTGACACAT+TGG | 0.563114 | 4.4:+23833789 | MS.gene33788:CDS |
| GAAGTCAACTTTATCTGAGT+AGG | 0.564861 | 4.4:+23834995 | MS.gene33788:CDS |
| TATCCTCAACTATATATCAA+GGG | 0.567280 | 4.4:+23834594 | MS.gene33788:CDS |
| TGATATCCTCTCGGATTCAG+AGG | 0.567907 | 4.4:+23834146 | MS.gene33788:CDS |
| CACCACACCCTCCTCTCGAA+GGG | 0.574638 | 4.4:-23834820 | None:intergenic |
| TCAGTTATGCTGTTTATGAA+GGG | 0.574849 | 4.4:+23834429 | MS.gene33788:CDS |
| TTTCCTCAGCTTTACTACAA+AGG | 0.576171 | 4.4:+23834918 | MS.gene33788:CDS |
| CCACCACACCCTCCTCTCGA+AGG | 0.579100 | 4.4:-23834821 | None:intergenic |
| CAAGACTGTTGACACATTGG+AGG | 0.580038 | 4.4:+23833792 | MS.gene33788:CDS |
| AGTGATGATGAGGTGAGACA+GGG | 0.582895 | 4.4:+23834867 | MS.gene33788:CDS |
| CCCAAGACTAGCAGGAGAAG+CGG | 0.585473 | 4.4:-23833881 | None:intergenic |
| CCTTCGAGAGGAGGGTGTGG+TGG | 0.585829 | 4.4:+23834821 | MS.gene33788:CDS |
| AAAGTCGGAGTTGGATGAGG+TGG | 0.589138 | 4.4:+23832194 | MS.gene33788:CDS |
| GCAATTGCTATGCATGAGAG+TGG | 0.592542 | 4.4:+23834255 | MS.gene33788:CDS |
| TAGTAAAGCTGAGGAAAGGT+AGG | 0.596200 | 4.4:-23834912 | None:intergenic |
| AAGACTGTTGACACATTGGA+GGG | 0.599834 | 4.4:+23833793 | MS.gene33788:CDS |
| CAGTAAAGCTGAGGAAATGT+GGG | 0.600655 | 4.4:-23834201 | None:intergenic |
| TTCCTGCTGAAACCACACTT+AGG | 0.600780 | 4.4:-23834465 | None:intergenic |
| GCAAAGGAGAACTTGTTGGC+GGG | 0.600992 | 4.4:+23834223 | MS.gene33788:CDS |
| TGTAAACGCCCTTCGAGAGG+AGG | 0.601040 | 4.4:+23834812 | MS.gene33788:CDS |
| ATCCTCAACTATATATCAAG+GGG | 0.601469 | 4.4:+23834595 | MS.gene33788:CDS |
| TGGTGGATCAGACATTGTGT+TGG | 0.602781 | 4.4:+23834626 | MS.gene33788:CDS |
| GGTTCGTGGCGGTTCTCCGG+TGG | 0.602795 | 4.4:+23832215 | MS.gene33788:CDS |
| AACAGATTCAGGAAACGCCA+AGG | 0.605465 | 4.4:+23834335 | MS.gene33788:CDS |
| AGCAGAGACAGAATAAGCCT+CGG | 0.606508 | 4.4:-23832462 | None:intergenic |
| GTAAACGCCCTTCGAGAGGA+GGG | 0.607590 | 4.4:+23834813 | MS.gene33788:CDS |
| TCGGATTCAGAGGTTCGTGA+GGG | 0.608082 | 4.4:+23834156 | MS.gene33788:CDS |
| GTGATGATGAGGTGAGACAG+GGG | 0.611525 | 4.4:+23834868 | MS.gene33788:CDS |
| ACCCCAGATGCTCCAAGATG+CGG | 0.614566 | 4.4:+23834774 | MS.gene33788:CDS |
| AGTCCTGAAGAGCCAAAATG+TGG | 0.615193 | 4.4:+23834066 | MS.gene33788:CDS |
| ACCGCATCTTGGAGCATCTG+GGG | 0.616858 | 4.4:-23834775 | None:intergenic |
| GTGTGAAGCTTCCAAACACA+TGG | 0.616893 | 4.4:+23832260 | MS.gene33788:CDS |
| TTTGTAGTAAAGCTGAGGAA+AGG | 0.624743 | 4.4:-23834916 | None:intergenic |
| AGTTGTAAACGCCCTTCGAG+AGG | 0.628177 | 4.4:+23834809 | MS.gene33788:CDS |
| TCTCCTTTGCAGTAAAGCTG+AGG | 0.629246 | 4.4:-23834210 | None:intergenic |
| ACAGATTCAGGAAACGCCAA+GGG | 0.630607 | 4.4:+23834336 | MS.gene33788:CDS |
| AATTGCTATGCATGAGAGTG+GGG | 0.633961 | 4.4:+23834257 | MS.gene33788:CDS |
| GCGAGACGTGAATTCAAAGT+CGG | 0.634026 | 4.4:+23832179 | MS.gene33788:CDS |
| TAAGTGTGGTTTCAGCAGGA+AGG | 0.635846 | 4.4:+23834467 | MS.gene33788:CDS |
| AGAAGTCCGACAAGGACTCA+AGG | 0.641229 | 4.4:+23834551 | MS.gene33788:CDS |
| CCTTCATGAAGAGCATCACA+GGG | 0.642910 | 4.4:-23834749 | None:intergenic |
| TGATATATTAAGTGATGATG+AGG | 0.646285 | 4.4:+23834857 | MS.gene33788:CDS |
| TTGGATGAGGTGGTTCGTGG+CGG | 0.646766 | 4.4:+23832204 | MS.gene33788:CDS |
| GATTCAGGAAACGCCAAGGG+TGG | 0.648240 | 4.4:+23834339 | MS.gene33788:CDS |
| TTCAAGAACAGCAGATCCTG+CGG | 0.648687 | 4.4:-23833908 | None:intergenic |
| TCACCTTTGTAGTAAAGCTG+AGG | 0.655861 | 4.4:-23834921 | None:intergenic |
| TACAAAGGTGAGCTGATAGG+TGG | 0.660078 | 4.4:+23834933 | MS.gene33788:CDS |
| GACCAAGCTTTCCAGCCGAG+AGG | 0.661429 | 4.4:-23834397 | None:intergenic |
| AAACCAGATGAACCTAAGTG+TGG | 0.682029 | 4.4:+23834453 | MS.gene33788:CDS |
| CATCATCGAGAGAAAATGGG+TGG | 0.688702 | 4.4:+23832150 | None:intergenic |
| CACGAACCTCTGAATCCGAG+AGG | 0.707101 | 4.4:-23834152 | None:intergenic |
| ATGGGTATGAGGGAAATCAG+TGG | 0.723809 | 4.4:-23832304 | None:intergenic |
| ACTGATGAAGAAGTCCGACA+AGG | 0.725862 | 4.4:+23834543 | MS.gene33788:CDS |
| TCCTCAACTATATATCAAGG+GGG | 0.735477 | 4.4:+23834596 | MS.gene33788:CDS |
| AGAACAACCAGAGATATCCG+AGG | 0.738447 | 4.4:+23832445 | MS.gene33788:CDS |
| CTTCATGAAGAGCATCACAG+GGG | 0.778155 | 4.4:-23834748 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTATTTTTTTT+AGG | + | chr4.4:23832412-23832431 | MS.gene33788:intron | 0.0% |
| !! | AAAATATAAGTATTATTTGT+AGG | - | chr4.4:23833331-23833350 | None:intergenic | 10.0% |
| !! | GAAAATAAAAAAATAGCTTA+TGG | + | chr4.4:23832875-23832894 | MS.gene33788:intron | 15.0% |
| !!! | ATAAAAAAAGATAACTCTTT+TGG | - | chr4.4:23833647-23833666 | None:intergenic | 15.0% |
| !!! | TAAAAAAAGATAACTCTTTT+GGG | - | chr4.4:23833646-23833665 | None:intergenic | 15.0% |
| !! | AAAATAAAGCCAATTTAAAC+AGG | + | chr4.4:23832967-23832986 | MS.gene33788:intron | 20.0% |
| !! | ACTATATTCCATTGTTTAAT+TGG | - | chr4.4:23833214-23833233 | None:intergenic | 20.0% |
| !! | CAAATGAATATCAAAATTTG+GGG | + | chr4.4:23832992-23833011 | MS.gene33788:intron | 20.0% |
| !! | CCAAATGAATATCAAAATTT+GGG | + | chr4.4:23832991-23833010 | MS.gene33788:intron | 20.0% |
| !! | TCCAAATGAATATCAAAATT+TGG | + | chr4.4:23832990-23833009 | MS.gene33788:intron | 20.0% |
| !! | TGTTATATTTGTTTCATCAA+CGG | - | chr4.4:23834319-23834338 | None:intergenic | 20.0% |
| !! | TTTATTGAAAACTTGATATC+CGG | - | chr4.4:23832855-23832874 | None:intergenic | 20.0% |
| !!! | AAAAGTTGTTGATATTTTGA+AGG | + | chr4.4:23834098-23834117 | MS.gene33788:CDS | 20.0% |
| !!! | AATTCATTCTCATAGTTTTT+CGG | + | chr4.4:23832609-23832628 | MS.gene33788:intron | 20.0% |
| !!! | ATTAAGTTGTTTATTCAAAC+AGG | - | chr4.4:23832691-23832710 | None:intergenic | 20.0% |
| !!! | GTTTAAATTGGCTTTATTTT+AGG | - | chr4.4:23832967-23832986 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATTCAAACA+GGG | - | chr4.4:23832690-23832709 | None:intergenic | 20.0% |
| !!! | TTTTGTTTAAGTTGCATTAT+AGG | + | chr4.4:23832632-23832651 | MS.gene33788:intron | 20.0% |
| ! | AAAAAAGTAAAGTTCAACCA+GGG | + | chr4.4:23833971-23833990 | MS.gene33788:CDS | 25.0% |
| ! | AAATTGCAAAGGGAATAAAA+AGG | - | chr4.4:23832363-23832382 | None:intergenic | 25.0% |
| ! | AAGTAAGATGAAAATTGCAA+AGG | - | chr4.4:23832374-23832393 | None:intergenic | 25.0% |
| ! | AATTGCAAAGGGAATAAAAA+GGG | - | chr4.4:23832362-23832381 | None:intergenic | 25.0% |
| ! | AGAAAACTTTACATGAGAAA+GGG | + | chr4.4:23834673-23834692 | MS.gene33788:CDS | 25.0% |
| ! | AGTAAGATGAAAATTGCAAA+GGG | - | chr4.4:23832373-23832392 | None:intergenic | 25.0% |
| ! | ATAAGTATTATTTGTAGGTG+AGG | - | chr4.4:23833326-23833345 | None:intergenic | 25.0% |
| ! | ATCTTAAAGAGCTTATGAAA+TGG | + | chr4.4:23832813-23832832 | MS.gene33788:intron | 25.0% |
| ! | ATGATTCATACTGTCAATAT+GGG | + | chr4.4:23833687-23833706 | MS.gene33788:intron | 25.0% |
| ! | ATTAGTAGTTATTATCTGTC+AGG | + | chr4.4:23833765-23833784 | MS.gene33788:intron | 25.0% |
| ! | GAAACAAATATAACAGATTC+AGG | + | chr4.4:23834324-23834343 | MS.gene33788:CDS | 25.0% |
| ! | GAACTTAATATTATTGTTGC+TGG | + | chr4.4:23832546-23832565 | MS.gene33788:intron | 25.0% |
| ! | TAAATTACATGTGATTAGGT+GGG | + | chr4.4:23833276-23833295 | MS.gene33788:intron | 25.0% |
| ! | TATCCTCAACTATATATCAA+GGG | + | chr4.4:23834594-23834613 | MS.gene33788:CDS | 25.0% |
| ! | TGATCAATCCAATTAAACAA+TGG | + | chr4.4:23833203-23833222 | MS.gene33788:intron | 25.0% |
| ! | TGGTTAAATTACATGTGATT+AGG | + | chr4.4:23833272-23833291 | MS.gene33788:intron | 25.0% |
| ! | TTAAATTACATGTGATTAGG+TGG | + | chr4.4:23833275-23833294 | MS.gene33788:intron | 25.0% |
| ! | TTATCCTCAACTATATATCA+AGG | + | chr4.4:23834593-23834612 | MS.gene33788:CDS | 25.0% |
| !! | ATAAGCTAATTTTATGACAG+AGG | + | chr4.4:23832737-23832756 | MS.gene33788:intron | 25.0% |
| !! | TAAGCTAATTTTATGACAGA+GGG | + | chr4.4:23832738-23832757 | MS.gene33788:intron | 25.0% |
| !! | TGATATATTAAGTGATGATG+AGG | + | chr4.4:23834857-23834876 | MS.gene33788:CDS | 25.0% |
| !!! | CCCAAATTTTGATATTCATT+TGG | - | chr4.4:23832994-23833013 | None:intergenic | 25.0% |
| !!! | GCAGATTTTTAATTAAGACT+TGG | + | chr4.4:23833577-23833596 | MS.gene33788:intron | 25.0% |
| !!! | TCAAAACTTTGTTGATTCTT+AGG | + | chr4.4:23832585-23832604 | MS.gene33788:intron | 25.0% |
| ACCTTGAAGAAGACAAAAAA+AGG | - | chr4.4:23832491-23832510 | None:intergenic | 30.0% | |
| AGAATGTCAAAACTCTCAAA+CGG | - | chr4.4:23834522-23834541 | None:intergenic | 30.0% | |
| ATCCTCAACTATATATCAAG+GGG | + | chr4.4:23834595-23834614 | MS.gene33788:CDS | 30.0% | |
| ATTGCAAAGGGAATAAAAAG+GGG | - | chr4.4:23832361-23832380 | None:intergenic | 30.0% | |
| CAGAAAACTTTACATGAGAA+AGG | + | chr4.4:23834672-23834691 | MS.gene33788:CDS | 30.0% | |
| GAAAAAAGTAAAGTTCAACC+AGG | + | chr4.4:23833970-23833989 | MS.gene33788:CDS | 30.0% | |
| GATATATAGTTGAGGATAAC+TGG | - | chr4.4:23834592-23834611 | None:intergenic | 30.0% | |
| GATGATTCATACTGTCAATA+TGG | + | chr4.4:23833686-23833705 | MS.gene33788:intron | 30.0% | |
| TCAATATGGGATGTCAATAT+GGG | + | chr4.4:23833700-23833719 | MS.gene33788:intron | 30.0% | |
| TCATTTGGACCTGTTTAAAT+TGG | - | chr4.4:23832979-23832998 | None:intergenic | 30.0% | |
| TTCACTATTTCAACGTGTTA+TGG | + | chr4.4:23833032-23833051 | MS.gene33788:intron | 30.0% | |
| TTTCTTCAAACGATCTTCAA+TGG | - | chr4.4:23834715-23834734 | None:intergenic | 30.0% | |
| ! | AAGGATGTTTTCAAAGATCA+CGG | + | chr4.4:23834285-23834304 | MS.gene33788:CDS | 30.0% |
| ! | GGATTAAGGTATTCTCAAAT+TGG | + | chr4.4:23834889-23834908 | MS.gene33788:CDS | 30.0% |
| ! | TCAGTTATGCTGTTTATGAA+GGG | + | chr4.4:23834429-23834448 | MS.gene33788:CDS | 30.0% |
| ! | TTTCTGCTAAATCCACATTT+TGG | - | chr4.4:23834081-23834100 | None:intergenic | 30.0% |
| ! | TTTCTGTTTTCTTAGTAGAG+TGG | + | chr4.4:23832658-23832677 | MS.gene33788:intron | 30.0% |
| !! | TGATATTTTGAAGGAAGAGA+AGG | + | chr4.4:23834107-23834126 | MS.gene33788:CDS | 30.0% |
| !!! | TCCTTTTTTTGTCTTCTTCA+AGG | + | chr4.4:23832487-23832506 | MS.gene33788:CDS | 30.0% |
| AAAACCGAACCCTTAAGAAA+TGG | - | chr4.4:23832326-23832345 | None:intergenic | 35.0% | |
| AAACCGAACCCTTAAGAAAT+GGG | - | chr4.4:23832325-23832344 | None:intergenic | 35.0% | |
| AACAAGGTTTCAAAAGTAGC+AGG | + | chr4.4:23833838-23833857 | MS.gene33788:CDS | 35.0% | |
| AAGCACAAGTGAGACTATTT+GGG | - | chr4.4:23832930-23832949 | None:intergenic | 35.0% | |
| AAGGAAGAGAAGGTTAAGTT+TGG | + | chr4.4:23834117-23834136 | MS.gene33788:CDS | 35.0% | |
| AATAAACCTTGAGTCCTTGT+CGG | - | chr4.4:23834560-23834579 | None:intergenic | 35.0% | |
| AATTTCCCAGTGAATACTTG+TGG | - | chr4.4:23833424-23833443 | None:intergenic | 35.0% | |
| AGGTGGTTGTGATATCATTA+TGG | + | chr4.4:23834950-23834969 | MS.gene33788:CDS | 35.0% | |
| ATACCCATTTCTTAAGGGTT+CGG | + | chr4.4:23832319-23832338 | MS.gene33788:intron | 35.0% | |
| ATGAACCTAATAAGCAGAGT+TGG | - | chr4.4:23833136-23833155 | None:intergenic | 35.0% | |
| ATTAGTCCACAAGTATTCAC+TGG | + | chr4.4:23833415-23833434 | MS.gene33788:intron | 35.0% | |
| ATTATGGAGCTGCGAAATAA+TGG | + | chr4.4:23834966-23834985 | MS.gene33788:CDS | 35.0% | |
| GACTCAAGGTTTATTCAAAC+TGG | + | chr4.4:23834565-23834584 | MS.gene33788:CDS | 35.0% | |
| GTAGTTATTATCTGTCAGGA+TGG | + | chr4.4:23833769-23833788 | MS.gene33788:intron | 35.0% | |
| GTCAATATGGGATGTCAATA+TGG | + | chr4.4:23833699-23833718 | MS.gene33788:intron | 35.0% | |
| TAAGCACAAGTGAGACTATT+TGG | - | chr4.4:23832931-23832950 | None:intergenic | 35.0% | |
| TCCTCAACTATATATCAAGG+GGG | + | chr4.4:23834596-23834615 | MS.gene33788:CDS | 35.0% | |
| TGAGTACAAATTTAGCCTCT+CGG | + | chr4.4:23834382-23834401 | MS.gene33788:CDS | 35.0% | |
| TTAGTCCACAAGTATTCACT+GGG | + | chr4.4:23833416-23833435 | MS.gene33788:intron | 35.0% | |
| TTTCCTCAGCTTTACTACAA+AGG | + | chr4.4:23834918-23834937 | MS.gene33788:CDS | 35.0% | |
| TTTGTAGTAAAGCTGAGGAA+AGG | - | chr4.4:23834919-23834938 | None:intergenic | 35.0% | |
| ! | CAAACGGAACATTTTCTTGT+CGG | - | chr4.4:23834506-23834525 | None:intergenic | 35.0% |
| ! | CTCAGTTATGCTGTTTATGA+AGG | + | chr4.4:23834428-23834447 | MS.gene33788:CDS | 35.0% |
| ! | GCTTGAAGAAGTTTTCCAAT+TGG | + | chr4.4:23834178-23834197 | MS.gene33788:CDS | 35.0% |
| !! | AGATAACTCTTTTGGGTACA+TGG | - | chr4.4:23833639-23833658 | None:intergenic | 35.0% |
| !! | CTGTCTTGCTTTTCATGAAA+GGG | + | chr4.4:23834043-23834062 | MS.gene33788:CDS | 35.0% |
| !! | TGGAAGTTTTGATATCCTCT+CGG | + | chr4.4:23834137-23834156 | MS.gene33788:CDS | 35.0% |
| !!! | GGTTGGTGTTTTGTTTTTGT+TGG | + | chr4.4:23833252-23833271 | MS.gene33788:intron | 35.0% |
| !!! | TGCTACTTTTGAAACCTTGT+TGG | - | chr4.4:23833839-23833858 | None:intergenic | 35.0% |
| AAACCACACTTAGGTTCATC+TGG | - | chr4.4:23834459-23834478 | None:intergenic | 40.0% | |
| AAACCAGATGAACCTAAGTG+TGG | + | chr4.4:23834453-23834472 | MS.gene33788:CDS | 40.0% | |
| AAGACTGTTGACACATTGGA+GGG | + | chr4.4:23833793-23833812 | MS.gene33788:CDS | 40.0% | |
| AATTGCTATGCATGAGAGTG+GGG | + | chr4.4:23834257-23834276 | MS.gene33788:CDS | 40.0% | |
| ACCCTTAAGAAATGGGTATG+AGG | - | chr4.4:23832318-23832337 | None:intergenic | 40.0% | |
| ATGCAATTGTTCGTCACTGA+AGG | - | chr4.4:23833493-23833512 | None:intergenic | 40.0% | |
| ATTACATGTGATTAGGTGGG+AGG | + | chr4.4:23833279-23833298 | MS.gene33788:intron | 40.0% | |
| CAATTGCTATGCATGAGAGT+GGG | + | chr4.4:23834256-23834275 | MS.gene33788:CDS | 40.0% | |
| CAGTAAAGCTGAGGAAATGT+GGG | - | chr4.4:23834204-23834223 | None:intergenic | 40.0% | |
| CATCAATGAGTCGATGACTA+TGG | + | chr4.4:23833169-23833188 | MS.gene33788:intron | 40.0% | |
| CCCTCATACCCATTTCTTAA+GGG | + | chr4.4:23832314-23832333 | MS.gene33788:CDS | 40.0% | |
| CCCTTAAGAAATGGGTATGA+GGG | - | chr4.4:23832317-23832336 | None:intergenic | 40.0% | |
| CCTTTCATGAAAAGCAAGAC+AGG | - | chr4.4:23834045-23834064 | None:intergenic | 40.0% | |
| GTGTTGGAGATGCAAAAAAG+CGG | + | chr4.4:23834642-23834661 | MS.gene33788:CDS | 40.0% | |
| TACTACAAAGGTGAGCTGAT+AGG | + | chr4.4:23834930-23834949 | MS.gene33788:CDS | 40.0% | |
| TACTGCAAAGGAGAACTTGT+TGG | + | chr4.4:23834219-23834238 | MS.gene33788:CDS | 40.0% | |
| TAGTAAAGCTGAGGAAAGGT+AGG | - | chr4.4:23834915-23834934 | None:intergenic | 40.0% | |
| TATATCAAGGGGGAGCTTAT+TGG | + | chr4.4:23834606-23834625 | MS.gene33788:CDS | 40.0% | |
| TCAACTGAAAAAGCGATTGC+AGG | + | chr4.4:23834002-23834021 | MS.gene33788:CDS | 40.0% | |
| TCACCTTTGTAGTAAAGCTG+AGG | - | chr4.4:23834924-23834943 | None:intergenic | 40.0% | |
| TCCATCAAGTTTAGCCAACA+AGG | + | chr4.4:23833822-23833841 | MS.gene33788:CDS | 40.0% | |
| TCCCCCTTGATATATAGTTG+AGG | - | chr4.4:23834600-23834619 | None:intergenic | 40.0% | |
| TCCCTCATACCCATTTCTTA+AGG | + | chr4.4:23832313-23832332 | MS.gene33788:CDS | 40.0% | |
| TCTTGCCAACTCTGCTTATT+AGG | + | chr4.4:23833128-23833147 | MS.gene33788:intron | 40.0% | |
| TGCAATTGTTCGTCACTGAA+GGG | - | chr4.4:23833492-23833511 | None:intergenic | 40.0% | |
| TGTTGGAGATGCAAAAAAGC+GGG | + | chr4.4:23834643-23834662 | MS.gene33788:CDS | 40.0% | |
| TTACATGTGATTAGGTGGGA+GGG | + | chr4.4:23833280-23833299 | MS.gene33788:intron | 40.0% | |
| TTTCCTCAGCTTTACTGCAA+AGG | + | chr4.4:23834207-23834226 | MS.gene33788:CDS | 40.0% | |
| ! | AACAAAGTCCTGCATTTTCC+TGG | - | chr4.4:23833083-23833102 | None:intergenic | 40.0% |
| ! | ACCTTGTTGGCTAAACTTGA+TGG | - | chr4.4:23833826-23833845 | None:intergenic | 40.0% |
| ! | CGATCTTCAATGGTCTCTTT+TGG | - | chr4.4:23834705-23834724 | None:intergenic | 40.0% |
| !! | CATAGTCATCGACTCATTGA+TGG | - | chr4.4:23833171-23833190 | None:intergenic | 40.0% |
| !! | CCTGTCTTGCTTTTCATGAA+AGG | + | chr4.4:23834042-23834061 | MS.gene33788:CDS | 40.0% |
| !!! | AATCCACATTTTGGCTCTTC+AGG | - | chr4.4:23834072-23834091 | None:intergenic | 40.0% |
| AAAACTTGATATCCGGCCCA+TGG | - | chr4.4:23832848-23832867 | None:intergenic | 45.0% | |
| AACAGATTCAGGAAACGCCA+AGG | + | chr4.4:23834335-23834354 | MS.gene33788:CDS | 45.0% | |
| AACCTAAGTGTGGTTTCAGC+AGG | + | chr4.4:23834463-23834482 | MS.gene33788:CDS | 45.0% | |
| ACAGATTCAGGAAACGCCAA+GGG | + | chr4.4:23834336-23834355 | MS.gene33788:CDS | 45.0% | |
| ACCAAGACAGAAAGTCAGTG+TGG | - | chr4.4:23833450-23833469 | None:intergenic | 45.0% | |
| ACTGATGAAGAAGTCCGACA+AGG | + | chr4.4:23834543-23834562 | MS.gene33788:CDS | 45.0% | |
| AGAACAACCAGAGATATCCG+AGG | + | chr4.4:23832445-23832464 | MS.gene33788:CDS | 45.0% | |
| AGATTTAGAGATGCCACCCT+TGG | - | chr4.4:23834355-23834374 | None:intergenic | 45.0% | |
| AGCAGAGACAGAATAAGCCT+CGG | - | chr4.4:23832465-23832484 | None:intergenic | 45.0% | |
| AGGGAATAAAAAGGGGCGAT+TGG | - | chr4.4:23832354-23832373 | None:intergenic | 45.0% | |
| AGTCCTGAAGAGCCAAAATG+TGG | + | chr4.4:23834066-23834085 | MS.gene33788:CDS | 45.0% | |
| ATGGGTATGAGGGAAATCAG+TGG | - | chr4.4:23832307-23832326 | None:intergenic | 45.0% | |
| CAAGACTGTTGACACATTGG+AGG | + | chr4.4:23833792-23833811 | MS.gene33788:CDS | 45.0% | |
| CATCTTTGCCAGGAAAATGC+AGG | + | chr4.4:23833072-23833091 | MS.gene33788:intron | 45.0% | |
| CCTGTGATGCTCTTCATGAA+GGG | + | chr4.4:23834750-23834769 | MS.gene33788:CDS | 45.0% | |
| CGTGAATTCAAAGTCGGAGT+TGG | + | chr4.4:23832185-23832204 | MS.gene33788:CDS | 45.0% | |
| CTGGAAAGCTTGGTCAATTC+AGG | + | chr4.4:23834405-23834424 | MS.gene33788:CDS | 45.0% | |
| CTGGAACTAAAACCGCATCT+TGG | - | chr4.4:23834789-23834808 | None:intergenic | 45.0% | |
| GAAGGGTTTCACTCTTGGTA+CGG | - | chr4.4:23833475-23833494 | None:intergenic | 45.0% | |
| GAATAAGCCTCGGATATCTC+TGG | - | chr4.4:23832455-23832474 | None:intergenic | 45.0% | |
| GCAATTGCTATGCATGAGAG+TGG | + | chr4.4:23834255-23834274 | MS.gene33788:CDS | 45.0% | |
| GCAGTAAAGCTGAGGAAATG+TGG | - | chr4.4:23834205-23834224 | None:intergenic | 45.0% | |
| GCGAGACGTGAATTCAAAGT+CGG | + | chr4.4:23832179-23832198 | MS.gene33788:CDS | 45.0% | |
| GGGAATAAAAAGGGGCGATT+GGG | - | chr4.4:23832353-23832372 | None:intergenic | 45.0% | |
| GGGTGGCATCTCTAAATCTA+CGG | + | chr4.4:23834356-23834375 | MS.gene33788:CDS | 45.0% | |
| GTAGCAGGCTCAATTAACTC+TGG | + | chr4.4:23833853-23833872 | MS.gene33788:CDS | 45.0% | |
| GTGTGAAGCTTCCAAACACA+TGG | + | chr4.4:23832260-23832279 | MS.gene33788:CDS | 45.0% | |
| GTTGGAGATGCAAAAAAGCG+GGG | + | chr4.4:23834644-23834663 | MS.gene33788:CDS | 45.0% | |
| TAAGTGTGGTTTCAGCAGGA+AGG | + | chr4.4:23834467-23834486 | MS.gene33788:CDS | 45.0% | |
| TACAAAGGTGAGCTGATAGG+TGG | + | chr4.4:23834933-23834952 | MS.gene33788:CDS | 45.0% | |
| TACAAATTTAGCCTCTCGGC+TGG | + | chr4.4:23834386-23834405 | MS.gene33788:CDS | 45.0% | |
| TCACTGAAGGGTTTCACTCT+TGG | - | chr4.4:23833480-23833499 | None:intergenic | 45.0% | |
| TCTCCTTTGCAGTAAAGCTG+AGG | - | chr4.4:23834213-23834232 | None:intergenic | 45.0% | |
| TGATATCCTCTCGGATTCAG+AGG | + | chr4.4:23834146-23834165 | MS.gene33788:CDS | 45.0% | |
| TGGCAAGACTGTTGACACAT+TGG | + | chr4.4:23833789-23833808 | MS.gene33788:CDS | 45.0% | |
| TGGCTAAGTGAGAGAAGAGT+TGG | - | chr4.4:23832287-23832306 | None:intergenic | 45.0% | |
| TTCAAAGTCGGAGTTGGATG+AGG | + | chr4.4:23832191-23832210 | MS.gene33788:CDS | 45.0% | |
| TTCAAGAACAGCAGATCCTG+CGG | - | chr4.4:23833911-23833930 | None:intergenic | 45.0% | |
| TTCAGTTGACTACTAAGCCC+TGG | - | chr4.4:23833991-23834010 | None:intergenic | 45.0% | |
| TTCCTGCTGAAACCACACTT+AGG | - | chr4.4:23834468-23834487 | None:intergenic | 45.0% | |
| ! | AAGTGATGATGAGGTGAGAC+AGG | + | chr4.4:23834866-23834885 | MS.gene33788:CDS | 45.0% |
| ! | AGTGATGATGAGGTGAGACA+GGG | + | chr4.4:23834867-23834886 | MS.gene33788:CDS | 45.0% |
| ! | GAAGAGTTGGTCCATGTGTT+TGG | - | chr4.4:23832274-23832293 | None:intergenic | 45.0% |
| ! | TGGTGGATCAGACATTGTGT+TGG | + | chr4.4:23834626-23834645 | MS.gene33788:CDS | 45.0% |
| ! | TTTTCCTGGCAAAGATGCCA+AGG | - | chr4.4:23833069-23833088 | None:intergenic | 45.0% |
| !! | AGTTTTGTCTGTGCTGTGTC+TGG | + | chr4.4:23833231-23833250 | MS.gene33788:intron | 45.0% |
| !! | CCTTCATGAAGAGCATCACA+GGG | - | chr4.4:23834752-23834771 | None:intergenic | 45.0% |
| !! | CTTCATGAAGAGCATCACAG+GGG | - | chr4.4:23834751-23834770 | None:intergenic | 45.0% |
| !! | TCCACACTGACTTTCTGTCT+TGG | + | chr4.4:23833446-23833465 | MS.gene33788:intron | 45.0% |
| !! | TGCAAAGGAGAACTTGTTGG+CGG | + | chr4.4:23834222-23834241 | MS.gene33788:CDS | 45.0% |
| !! | TAAATATTAAAAACAATATA+TGG | - | chr4.4:23833396-23833415 | None:intergenic | 5.0% |
| AAAGTCGGAGTTGGATGAGG+TGG | + | chr4.4:23832194-23832213 | MS.gene33788:CDS | 50.0% | |
| AGAAGTCCGACAAGGACTCA+AGG | + | chr4.4:23834551-23834570 | MS.gene33788:CDS | 50.0% | |
| AGTTGTAAACGCCCTTCGAG+AGG | + | chr4.4:23834809-23834828 | MS.gene33788:CDS | 50.0% | |
| ATCAAGGGGGAGCTTATTGG+TGG | + | chr4.4:23834609-23834628 | MS.gene33788:CDS | 50.0% | |
| CCCTGTGATGCTCTTCATGA+AGG | + | chr4.4:23834749-23834768 | MS.gene33788:CDS | 50.0% | |
| CTGAGGAAATGTGGGCCAAT+TGG | - | chr4.4:23834196-23834215 | None:intergenic | 50.0% | |
| GAAATGGACACCGAGTCCAT+GGG | + | chr4.4:23832829-23832848 | MS.gene33788:intron | 50.0% | |
| GCATGAGAGTGGGGAGTTAA+AGG | + | chr4.4:23834266-23834285 | MS.gene33788:CDS | 50.0% | |
| TAGGTGAGGACGCATGTTCA+AGG | - | chr4.4:23833312-23833331 | None:intergenic | 50.0% | |
| TCGGATTCAGAGGTTCGTGA+GGG | + | chr4.4:23834156-23834175 | MS.gene33788:CDS | 50.0% | |
| TGAAATGGACACCGAGTCCA+TGG | + | chr4.4:23832828-23832847 | MS.gene33788:intron | 50.0% | |
| TGAGGTGAGACAGGGGATTA+AGG | + | chr4.4:23834875-23834894 | MS.gene33788:CDS | 50.0% | |
| TTGTCTGTGCTGTGTCTGGT+TGG | + | chr4.4:23833235-23833254 | MS.gene33788:intron | 50.0% | |
| ! | AAACCGCATCTTGGAGCATC+TGG | - | chr4.4:23834780-23834799 | None:intergenic | 50.0% |
| ! | AACCGCATCTTGGAGCATCT+GGG | - | chr4.4:23834779-23834798 | None:intergenic | 50.0% |
| ! | GTGATGATGAGGTGAGACAG+GGG | + | chr4.4:23834868-23834887 | MS.gene33788:CDS | 50.0% |
| !! | CCCTTCATGAAGAGCATCAC+AGG | - | chr4.4:23834753-23834772 | None:intergenic | 50.0% |
| !! | GCAAAGGAGAACTTGTTGGC+GGG | + | chr4.4:23834223-23834242 | MS.gene33788:CDS | 50.0% |
| !! | TCGAAGGGCGTTTACAACTC+TGG | - | chr4.4:23834808-23834827 | None:intergenic | 50.0% |
| !! | TTCTCCTGCTAGTCTTGGGA+TGG | + | chr4.4:23833885-23833904 | MS.gene33788:CDS | 50.0% |
| ACCCCAGATGCTCCAAGATG+CGG | + | chr4.4:23834774-23834793 | MS.gene33788:CDS | 55.0% | |
| CACGAACCTCTGAATCCGAG+AGG | - | chr4.4:23834155-23834174 | None:intergenic | 55.0% | |
| CCCAAGACTAGCAGGAGAAG+CGG | - | chr4.4:23833884-23833903 | None:intergenic | 55.0% | |
| CTCGGATTCAGAGGTTCGTG+AGG | + | chr4.4:23834155-23834174 | MS.gene33788:CDS | 55.0% | |
| GAGTTGGATGAGGTGGTTCG+TGG | + | chr4.4:23832201-23832220 | MS.gene33788:CDS | 55.0% | |
| GATTCAGGAAACGCCAAGGG+TGG | + | chr4.4:23834339-23834358 | MS.gene33788:CDS | 55.0% | |
| GTAAACGCCCTTCGAGAGGA+GGG | + | chr4.4:23834813-23834832 | MS.gene33788:CDS | 55.0% | |
| TCCGGTGGTGCTTCACTTCT+GGG | + | chr4.4:23832230-23832249 | MS.gene33788:CDS | 55.0% | |
| TCCTGGCAAAGATGCCAAGG+AGG | - | chr4.4:23833066-23833085 | None:intergenic | 55.0% | |
| TGATATCCGGCCCATGGACT+CGG | - | chr4.4:23832842-23832861 | None:intergenic | 55.0% | |
| TGCTTCACTTCTGGGCGTCA+TGG | + | chr4.4:23832238-23832257 | MS.gene33788:CDS | 55.0% | |
| TGGCAAAGATGCCAAGGAGG+CGG | - | chr4.4:23833063-23833082 | None:intergenic | 55.0% | |
| TGTAAACGCCCTTCGAGAGG+AGG | + | chr4.4:23834812-23834831 | MS.gene33788:CDS | 55.0% | |
| TTGGATGAGGTGGTTCGTGG+CGG | + | chr4.4:23832204-23832223 | MS.gene33788:CDS | 55.0% | |
| ! | ACCGCATCTTGGAGCATCTG+GGG | - | chr4.4:23834778-23834797 | None:intergenic | 55.0% |
| ! | TTATGGTTCTGCCGCCTCCT+TGG | + | chr4.4:23833049-23833068 | MS.gene33788:intron | 55.0% |
| !! | CCGCTTCTCCTGCTAGTCTT+GGG | + | chr4.4:23833881-23833900 | MS.gene33788:CDS | 55.0% |
| !! | GAAGAGCATCACAGGGGAAG+AGG | - | chr4.4:23834745-23834764 | None:intergenic | 55.0% |
| !!! | GAGGAGGGTGTGGTGGATTT+TGG | + | chr4.4:23834828-23834847 | MS.gene33788:CDS | 55.0% |
| AGCCTCTCGGCTGGAAAGCT+TGG | + | chr4.4:23834395-23834414 | MS.gene33788:CDS | 60.0% | |
| CACCACACCCTCCTCTCGAA+GGG | - | chr4.4:23834823-23834842 | None:intergenic | 60.0% | |
| CTCCGGTGGTGCTTCACTTC+TGG | + | chr4.4:23832229-23832248 | MS.gene33788:CDS | 60.0% | |
| GACCAAGCTTTCCAGCCGAG+AGG | - | chr4.4:23834400-23834419 | None:intergenic | 60.0% | |
| GCCTCCTTGGCATCTTTGCC+AGG | + | chr4.4:23833062-23833081 | MS.gene33788:intron | 60.0% | |
| ! | GCCCAGAAGTGAAGCACCAC+CGG | - | chr4.4:23832234-23832253 | None:intergenic | 60.0% |
| ! | GCCGCTTCTCCTGCTAGTCT+TGG | + | chr4.4:23833880-23833899 | MS.gene33788:CDS | 60.0% |
| CCACCACACCCTCCTCTCGA+AGG | - | chr4.4:23834824-23834843 | None:intergenic | 65.0% | |
| GCGGCCATCCCAAGACTAGC+AGG | - | chr4.4:23833892-23833911 | None:intergenic | 65.0% | |
| GGTGGTTCGTGGCGGTTCTC+CGG | + | chr4.4:23832212-23832231 | MS.gene33788:CDS | 65.0% | |
| TGGACACCGAGTCCATGGGC+CGG | + | chr4.4:23832833-23832852 | MS.gene33788:intron | 65.0% | |
| ! | CCTTCGAGAGGAGGGTGTGG+TGG | + | chr4.4:23834821-23834840 | MS.gene33788:CDS | 65.0% |
| !! | GCTAGTCTTGGGATGGCCGC+AGG | + | chr4.4:23833892-23833911 | MS.gene33788:CDS | 65.0% |
| CGCCCTTCGAGAGGAGGGTG+TGG | + | chr4.4:23834818-23834837 | MS.gene33788:CDS | 70.0% | |
| GGTTCGTGGCGGTTCTCCGG+TGG | + | chr4.4:23832215-23832234 | MS.gene33788:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 23832165 | 23835016 | 23832165 | ID=MS.gene33788 |
| chr4.4 | mRNA | 23832165 | 23835016 | 23832165 | ID=MS.gene33788.t1;Parent=MS.gene33788 |
| chr4.4 | exon | 23832165 | 23832335 | 23832165 | ID=MS.gene33788.t1.exon1;Parent=MS.gene33788.t1 |
| chr4.4 | CDS | 23832165 | 23832335 | 23832165 | ID=cds.MS.gene33788.t1;Parent=MS.gene33788.t1 |
| chr4.4 | exon | 23832434 | 23832508 | 23832434 | ID=MS.gene33788.t1.exon2;Parent=MS.gene33788.t1 |
| chr4.4 | CDS | 23832434 | 23832508 | 23832434 | ID=cds.MS.gene33788.t1;Parent=MS.gene33788.t1 |
| chr4.4 | exon | 23833787 | 23835016 | 23833787 | ID=MS.gene33788.t1.exon3;Parent=MS.gene33788.t1 |
| chr4.4 | CDS | 23833787 | 23835016 | 23833787 | ID=cds.MS.gene33788.t1;Parent=MS.gene33788.t1 |
| Gene Sequence |
| Protein sequence |
