AlfalfaGEDB | MS.gene052479

M. sativa cultivar XinJiangDaYe / MS.gene052479

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009055 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF00085.23 PF00462.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052479.t1	XP_013457051.1	94.9	491	25	0	1	491	1	491	7.20E-266	926

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052479.t1	Q9ZPH2	72.8	493	127	4	1	491	1	488	1.1e-203	710.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052479.t1	G7ZZ90	94.9	491	25	0	1	491	1	491	5.2e-266	926.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049411	MS.gene052479	0.805828	1.11E-49	-1.69E-46
MS.gene049580	MS.gene052479	0.803207	3.89E-49	-1.69E-46
MS.gene049680	MS.gene052479	0.804385	2.22E-49	-1.69E-46
MS.gene05029	MS.gene052479	0.811155	8.07E-51	-1.69E-46
MS.gene050752	MS.gene052479	0.833354	5.60E-56	-1.69E-46
MS.gene050838	MS.gene052479	0.823735	1.18E-53	-1.69E-46
MS.gene050955	MS.gene052479	0.849324	3.48E-60	-1.69E-46
MS.gene051003	MS.gene052479	0.843657	1.22E-58	-1.69E-46
MS.gene051234	MS.gene052479	0.805394	1.36E-49	-1.69E-46
MS.gene051343	MS.gene052479	0.801835	7.47E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052479.t1	MTR_4g088905	98.574	491	7	0	1	491	1	491	0.0	987
MS.gene052479.t1	MTR_2g103130	44.000	125	70	0	259	383	29	153	6.90e-30	114
MS.gene052479.t1	MTR_2g103130	46.535	101	54	0	154	254	53	153	7.10e-29	112
MS.gene052479.t1	MTR_2g103130	47.826	92	47	1	400	491	63	153	5.02e-25	101
MS.gene052479.t1	MTR_7g079520	49.091	110	55	1	277	386	71	179	5.09e-29	113
MS.gene052479.t1	MTR_7g079520	45.545	101	55	0	151	251	74	174	3.04e-27	108
MS.gene052479.t1	MTR_7g079520	50.526	95	46	1	392	486	79	172	4.15e-26	105
MS.gene052479.t1	MTR_4g016930	49.123	114	51	2	147	253	183	296	8.54e-27	110
MS.gene052479.t1	MTR_4g016930	33.854	192	103	10	312	485	106	291	1.47e-21	95.1
MS.gene052479.t1	MTR_4g016930	40.385	104	59	1	277	377	188	291	1.76e-19	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052479.t1	AT4G04950	72.819	493	127	4	1	491	1	488	0.0	728
MS.gene052479.t1	AT4G32580	64.242	165	48	3	1	164	1	155	1.31e-66	212
MS.gene052479.t1	AT3G54900	57.843	102	43	0	278	379	64	165	3.02e-32	121
MS.gene052479.t1	AT3G54900	52.000	100	48	0	151	250	66	165	5.68e-29	112
MS.gene052479.t1	AT3G54900	52.632	95	44	1	392	486	71	164	4.66e-26	104
MS.gene052479.t1	AT3G15660	45.370	108	59	0	147	254	56	163	1.31e-28	111
MS.gene052479.t1	AT3G15660	46.154	104	56	0	280	383	60	163	5.35e-28	110
MS.gene052479.t1	AT3G15660	42.157	102	58	1	390	491	63	163	1.51e-24	100
MS.gene052479.t1	AT3G15660	45.370	108	59	0	147	254	56	163	1.31e-28	111
MS.gene052479.t1	AT3G15660	46.154	104	56	0	280	383	60	163	5.35e-28	110

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Find 130 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGAACCCTTAAGAAA+TGG	0.386272	4.3:-24182889	None:intergenic
AAACCACACTTAGGTTCATC+TGG	0.410689	4.3:-24185021	None:intergenic
AAACCAGATGAACCTAAGTG+TGG	0.682029	4.3:+24185018	MS.gene052479:CDS
AAACCGAACCCTTAAGAAAT+GGG	0.473857	4.3:-24182888	None:intergenic
AAACCGCATCTTGGAGCATC+TGG	0.332380	4.3:-24185342	None:intergenic
AAAGTCGGAGTTGGATGAGG+TGG	0.589138	4.3:+24182760	MS.gene052479:CDS
AACAAGGTTTCAAAAGTAGC+AGG	0.531530	4.3:+24184403	MS.gene052479:CDS
AACAGATTCAGGAAACGCCA+AGG	0.605465	4.3:+24184900	MS.gene052479:CDS
AACCGCATCTTGGAGCATCT+GGG	0.499723	4.3:-24185341	None:intergenic
AACCTAAGTGTGGTTTCAGC+AGG	0.498764	4.3:+24185028	MS.gene052479:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCTTGAAGAAGACAAAAAA+AGG	-	chr4.3:24183056-24183075	None:intergenic	30.0%
AGAATGTCAAAACTCTCAAA+CGG	-	chr4.3:24185087-24185106	None:intergenic	30.0%
ATCCTCAACTATATATCAAG+GGG	+	chr4.3:24185160-24185179	MS.gene052479:CDS	30.0%
ATTGCAAAGGGAATAAAAAG+GGG	-	chr4.3:24182927-24182946	None:intergenic	30.0%
CAGAAAACTTTACATGAGAA+AGG	+	chr4.3:24185237-24185256	MS.gene052479:CDS	30.0%
GAAAAAAGTAAAGTTCAACC+AGG	+	chr4.3:24184535-24184554	MS.gene052479:CDS	30.0%
GAAAACTTTACATGAGAAAG+GGG	+	chr4.3:24185239-24185258	MS.gene052479:CDS	30.0%
GATATATAGTTGAGGATAAC+TGG	-	chr4.3:24185157-24185176	None:intergenic	30.0%
GATGATTCATACTGTCAATA+TGG	+	chr4.3:24184251-24184270	MS.gene052479:intron	30.0%
TCAATATGGGATGTCAATAT+GGG	+	chr4.3:24184265-24184284	MS.gene052479:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	24182731	24185581	24182731	ID=MS.gene052479
chr4.3	mRNA	24182731	24185581	24182731	ID=MS.gene052479.t1;Parent=MS.gene052479
chr4.3	exon	24182731	24182901	24182731	ID=MS.gene052479.t1.exon1;Parent=MS.gene052479.t1
chr4.3	CDS	24182731	24182901	24182731	ID=cds.MS.gene052479.t1;Parent=MS.gene052479.t1
chr4.3	exon	24182999	24183073	24182999	ID=MS.gene052479.t1.exon2;Parent=MS.gene052479.t1
chr4.3	CDS	24182999	24183073	24182999	ID=cds.MS.gene052479.t1;Parent=MS.gene052479.t1
chr4.3	exon	24184352	24185581	24184352	ID=MS.gene052479.t1.exon3;Parent=MS.gene052479.t1
chr4.3	CDS	24184352	24185581	24184352	ID=cds.MS.gene052479.t1;Parent=MS.gene052479.t1

Gene Sequence

>MS.gene052479

ATGGGTGGTTCGGTGCGAGACGTGAATTCAAAGTCGGAGTTGGATGAGGTGGTTCGTGGCGGTTCTCCGGTGGTGCTTCACTTCTGGGCGTCATGGTGTGAAGCTTCCAAACACATGGACCAACTCTTCTCTCACTTAGCCACTGATTTCCCTCATACCCATTTCTTAAGGGTTCGGTTTTCTTTCCCAATCGCCCCTTTTTATTCCCTTTGCAATTTTCATCTTACTTTATATTTTATCAATCAATTTTTATTTTTATTTTTTTTAGGTTGAAGCTGAAGAACAACCAGAGATATCCGAGGCTTATTCTGTCTCTGCTGTTCCTTTTTTTGTCTTCTTCAAGGTAAGTAACTGCAATTTGTAAACTCTTTCTTATCTGAGAACTTAATATTATTGTTGCTGGCATATCATCATAAAAATCAAAACTTTGTTGATTCTTAGGTAATTCATTCTCATAGTTTTTCGGTTTTGTTTAAGTTGCATTATAGGCTGTTTCTGTTTTCTTAGTAGAGTGGATTAGTCCCTGTTTGAATAAACAACTTAATTGCACTTATGATATATTTGTTTATGTATAAGCTAATTTTATGACAGAGGGTTAAATAATGTCAAACTGATGTCGTATAAGCTATAAGTTGTTTTCATACGTTATCTTAAAGAGCTTATGAAATGGACACCGAGTCCATGGGCCGGATATCAAGTTTTCAATAAAGAAAATAAAAAAATAGCTTATGGACATGTCATAAGCTGTTTCTGTAAGCTCGCCCAAATAGTCTCACTTGTGCTTATGCTACTAGATAACCTAAAATAAAGCCAATTTAAACAGGTCCAAATGAATATCAAAATTTGGGGAAAACTATGATGTATATTTCACTATTTCAACGTGTTATGGTTCTGCCGCCTCCTTGGCATCTTTGCCAGGAAAATGCAGGACTTTGTTTTCTTCTCATGTTCATTTCATATTTTCTTGCCAACTCTGCTTATTAGGTTCATTTTAATGTTATACCATCAATGAGTCGATGACTATGGTTCTGTTGTAGTGATCAATCCAATTAAACAATGGAATATAGTTTTGTTTGTGCTGTGTCTGGTTGGTGTTTTGTTTTTGTTGGTTAAATTACATGTGATTAGGTGGGAGGGCTGTCACCTTGAACATGCGTCCTCACCTACAAATAATACTTATATTTTTAACTTTTATAAGAAGATATTGTTTGAAAAGTCTTATAGTTTCCATATATTGTTTTTAATATTTATTAGTCCACAAGTATTCACTGGGAAATTTATCCACACTGACTTTCTGTCTTGGTTACCGTACCAAGAGTGAAACCCTTCAGTGACGAACAGTTGCATGTTGACATTAGATGATATTGAATTTGTAACTTATCAGAGCTATTTGTTGTGTATCTTTGCTTTTGCAGATTTTTAATTAAGACTTGGTTTTGATATTATTATTTATTTACAATACAAATTTCGCCATGTACCCAAAAGAGTTATCTTTTTTTATAGTGCAATCATAATGCTCTGATGATTCATACTGTCAATATGGGATGTCAATATGGGATTGAAAACTCAATTTGTTATCTTTGTTTGATTTATCAGTTGATTAGTAGTTATTATCTGTCAGGATGGCAAGACTGTTGACACATTGGAGGGAGCTGATCCATCAAGTTTAGCCAACAAGGTTTCAAAAGTAGCAGGCTCAATTAACTCTGGAGATGCCGCTTCTCCTGCTAGTCTTGGGATGGCTGCAGGATCTGCTGTTCTTGAAACAGTGAAAGAATTAGCGCAAGACAATTTATCTTCAAACGAAAAAAGTAAAGTTCAACCAGGGCTTAGTAGTCAACTGAAAAAGCGATTGCAGGAGCTCGTCGACTCTCATCCTGTCTTGCTTTTCATGAAAGGGAGTCCTGAAGAGCCAAAATGTGGATTTAGCAGAAAAGTTGTTGATATTTTGAAGGAAGAGAAGGTTAAGTTTGGAAGTTTTGATATCCTCTCGGATTCAGAGGTTCGTGAGGGCTTGAAGAAGTTTTCCAATTGGCCCACATTTCCTCAGCTTTACTGCAAAGGAGAACTTGTTGGCGGGTGTGACATAGCAATTGCTATGCATGAGAGTGGGGAGTTAAAGGATGTTTTCAAAGATCACGGAATTGATACCGTTGATGAAACAAATATAACAGATTCAGGAAACGCCAAGGGTGGCATCTCTAAATCTACGGATTTGAGTACAAATTTAGCCTCTCGGCTGGAAAGCTTGGTCAATTCAGGCTCAGTTATGCTGTTTATGAAGGGAAAACCAGATGAACCTAAGTGTGGTTTCAGCAGGAAGGTAGTTGAAATTCTCCGACAAGAAAATGTTCCGTTTGAGAGTTTTGACATTCTTACTGATGAAGAAGTCCGACAAGGACTCAAGGTTTATTCAAACTGGTCCAGTTATCCTCAACTATATATCAAGGGGGAGCTTATTGGTGGATCAGACATTGTGTTGGAGATGCAAAAAAGCGGGGAACTTCAGAAAACTTTACATGAGAAAGGGGTTCTTCCAAAAGAGACCATTGAAGATCGTTTGAAGAAATTGATTGCCTCTTCCCCTGTGATGCTCTTCATGAAGGGTACCCCAGATGCTCCAAGATGCGGTTTTAGTTCCAGAGTTGTAAACGCCCTTCGAGAGGAGGGTGTGGTGGATTTTGGTCACTTTGATATATTAAGTGATGATGAGGTGAGACAAGGGATTAAGGTATTCTCAAATTGGCCTACCTTTCCTCAGCTTTACTACAAAGGTGAGCTGATAGGTGGTTGTGATATCATTATGGAGCTGCGAAATAATGGAGAGCTGAAGTCAACTTTATCTGAGTAG

Protein sequence

>MS.gene052479.t1

MGGSVRDVNSKSELDEVVRGGSPVVLHFWASWCEASKHMDQLFSHLATDFPHTHFLRVEAEEQPEISEAYSVSAVPFFVFFKDGKTVDTLEGADPSSLANKVSKVAGSINSGDAASPASLGMAAGSAVLETVKELAQDNLSSNEKSKVQPGLSSQLKKRLQELVDSHPVLLFMKGSPEEPKCGFSRKVVDILKEEKVKFGSFDILSDSEVREGLKKFSNWPTFPQLYCKGELVGGCDIAIAMHESGELKDVFKDHGIDTVDETNITDSGNAKGGISKSTDLSTNLASRLESLVNSGSVMLFMKGKPDEPKCGFSRKVVEILRQENVPFESFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELQKTLHEKGVLPKETIEDRLKKLIASSPVMLFMKGTPDAPRCGFSSRVVNALREEGVVDFGHFDILSDDEVRQGIKVFSNWPTFPQLYYKGELIGGCDIIMELRNNGELKSTLSE