Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052479.t1 | XP_013457051.1 | 94.9 | 491 | 25 | 0 | 1 | 491 | 1 | 491 | 7.20E-266 | 926 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052479.t1 | Q9ZPH2 | 72.8 | 493 | 127 | 4 | 1 | 491 | 1 | 488 | 1.1e-203 | 710.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052479.t1 | G7ZZ90 | 94.9 | 491 | 25 | 0 | 1 | 491 | 1 | 491 | 5.2e-266 | 926.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene052479 | 0.805828 | 1.11E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene052479 | 0.803207 | 3.89E-49 | -1.69E-46 |
| MS.gene049680 | MS.gene052479 | 0.804385 | 2.22E-49 | -1.69E-46 |
| MS.gene05029 | MS.gene052479 | 0.811155 | 8.07E-51 | -1.69E-46 |
| MS.gene050752 | MS.gene052479 | 0.833354 | 5.60E-56 | -1.69E-46 |
| MS.gene050838 | MS.gene052479 | 0.823735 | 1.18E-53 | -1.69E-46 |
| MS.gene050955 | MS.gene052479 | 0.849324 | 3.48E-60 | -1.69E-46 |
| MS.gene051003 | MS.gene052479 | 0.843657 | 1.22E-58 | -1.69E-46 |
| MS.gene051234 | MS.gene052479 | 0.805394 | 1.36E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene052479 | 0.801835 | 7.47E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene052479 | 0.804636 | 1.96E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene052947 | 0.806288 | 8.85E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene054403 | 0.834716 | 2.55E-56 | -1.69E-46 |
| MS.gene052479 | MS.gene055555 | 0.807065 | 6.06E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene057234 | 0.810263 | 1.26E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene057694 | 0.810612 | 1.06E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene057705 | 0.817394 | 3.37E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene05781 | 0.809694 | 1.67E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene058054 | 0.803409 | 3.53E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene058074 | 0.816792 | 4.61E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene059146 | 0.822986 | 1.77E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene061878 | 0.809696 | 1.67E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene062512 | 0.832874 | 7.37E-56 | -1.69E-46 |
| MS.gene052479 | MS.gene063492 | 0.810954 | 8.91E-51 | -1.69E-46 |
| MS.gene052479 | MS.gene067571 | 0.820741 | 5.84E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene06837 | 0.820005 | 8.62E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene069310 | 0.839376 | 1.64E-57 | -1.69E-46 |
| MS.gene052479 | MS.gene069828 | 0.838318 | 3.09E-57 | -1.69E-46 |
| MS.gene052479 | MS.gene06984 | 0.844164 | 8.96E-59 | -1.69E-46 |
| MS.gene052479 | MS.gene069962 | 0.810333 | 1.21E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene071975 | 0.803953 | 2.73E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene072057 | 0.816055 | 6.74E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene072150 | 0.826071 | 3.32E-54 | -1.69E-46 |
| MS.gene052479 | MS.gene072555 | 0.838652 | 2.53E-57 | -1.69E-46 |
| MS.gene052479 | MS.gene072641 | 0.824448 | 8.03E-54 | -1.69E-46 |
| MS.gene052479 | MS.gene073207 | 0.827787 | 1.29E-54 | -1.69E-46 |
| MS.gene052479 | MS.gene08470 | 0.826453 | 2.69E-54 | -1.69E-46 |
| MS.gene052479 | MS.gene08948 | 0.8115 | 6.79E-51 | -1.69E-46 |
| MS.gene052479 | MS.gene20064 | 0.803688 | 3.09E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene20997 | 0.835505 | 1.61E-56 | -1.69E-46 |
| MS.gene052479 | MS.gene22433 | 0.8019 | 7.24E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene23060 | 0.805714 | 1.17E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene23954 | 0.822475 | 2.32E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene24930 | 0.810964 | 8.87E-51 | -1.69E-46 |
| MS.gene052479 | MS.gene25901 | 0.800539 | 1.37E-48 | -1.69E-46 |
| MS.gene052479 | MS.gene28409 | 0.836079 | 1.15E-56 | -1.69E-46 |
| MS.gene052479 | MS.gene28632 | 0.830374 | 3.04E-55 | -1.69E-46 |
| MS.gene052479 | MS.gene29700 | 0.825443 | 4.68E-54 | -1.69E-46 |
| MS.gene052479 | MS.gene31405 | 0.844455 | 7.48E-59 | -1.69E-46 |
| MS.gene052479 | MS.gene31856 | 0.818439 | 1.96E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene33250 | 0.822098 | 2.84E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene33788 | 0.911887 | 3.65E-83 | -1.69E-46 |
| MS.gene052479 | MS.gene33875 | 0.822216 | 2.67E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene36568 | 0.82262 | 2.15E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene37238 | 0.805084 | 1.58E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene37345 | -0.846301 | 2.37E-59 | -1.69E-46 |
| MS.gene052479 | MS.gene37471 | 0.809036 | 2.31E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene42671 | 0.805987 | 1.02E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene43682 | 0.805701 | 1.18E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene44141 | 0.816145 | 6.43E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene44240 | 0.833008 | 6.83E-56 | -1.69E-46 |
| MS.gene052479 | MS.gene46252 | 0.817492 | 3.21E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene49777 | 0.826817 | 2.20E-54 | -1.69E-46 |
| MS.gene052479 | MS.gene51641 | 0.834664 | 2.63E-56 | -1.69E-46 |
| MS.gene052479 | MS.gene51920 | 0.805525 | 1.28E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene52404 | 0.819612 | 1.06E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene54747 | 0.813357 | 2.67E-51 | -1.69E-46 |
| MS.gene052479 | MS.gene55094 | 0.834685 | 2.60E-56 | -1.69E-46 |
| MS.gene052479 | MS.gene56163 | 0.818949 | 1.50E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene56656 | 0.80444 | 2.16E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene57783 | 0.800855 | 1.19E-48 | -1.69E-46 |
| MS.gene052479 | MS.gene58098 | 0.806661 | 7.38E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene58227 | 0.810215 | 1.29E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene58438 | 0.82165 | 3.61E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene58719 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene58925 | 0.813644 | 2.31E-51 | -1.69E-46 |
| MS.gene052479 | MS.gene59505 | 0.83301 | 6.82E-56 | -1.69E-46 |
| MS.gene052479 | MS.gene59616 | 0.840563 | 8.07E-58 | -1.69E-46 |
| MS.gene052479 | MS.gene60093 | 0.808409 | 3.14E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene60717 | 0.836771 | 7.70E-57 | -1.69E-46 |
| MS.gene052479 | MS.gene61543 | 0.83042 | 2.97E-55 | -1.69E-46 |
| MS.gene052479 | MS.gene62834 | 0.847811 | 9.13E-60 | -1.69E-46 |
| MS.gene052479 | MS.gene64395 | 0.819884 | 9.19E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene64806 | 0.832803 | 7.67E-56 | -1.69E-46 |
| MS.gene052479 | MS.gene67485 | 0.830147 | 3.46E-55 | -1.69E-46 |
| MS.gene052479 | MS.gene69820 | 0.809648 | 1.71E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene72285 | 0.828483 | 8.77E-55 | -1.69E-46 |
| MS.gene052479 | MS.gene72413 | 0.831791 | 1.37E-55 | -1.69E-46 |
| MS.gene052479 | MS.gene72612 | 0.806884 | 6.62E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene72950 | -0.800807 | 1.21E-48 | -1.69E-46 |
| MS.gene052479 | MS.gene73234 | 0.80044 | 1.44E-48 | -1.69E-46 |
| MS.gene052479 | MS.gene73781 | 0.817497 | 3.20E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene73885 | 0.803454 | 3.46E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene74985 | 0.807434 | 5.06E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene74989 | 0.82173 | 3.46E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene75148 | 0.818006 | 2.46E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene78232 | 0.809877 | 1.52E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene81545 | 0.824972 | 6.04E-54 | -1.69E-46 |
| MS.gene052479 | MS.gene83326 | 0.827423 | 1.58E-54 | -1.69E-46 |
| MS.gene052479 | MS.gene85610 | 0.829855 | 4.08E-55 | -1.69E-46 |
| MS.gene052479 | MS.gene86061 | 0.821305 | 4.33E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene86392 | 0.827017 | 1.97E-54 | -1.69E-46 |
| MS.gene052479 | MS.gene86919 | 0.819362 | 1.21E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene88147 | 0.807336 | 5.31E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene89027 | 0.82503 | 5.85E-54 | -1.69E-46 |
| MS.gene052479 | MS.gene89663 | 0.828197 | 1.03E-54 | -1.69E-46 |
| MS.gene052479 | MS.gene91203 | 0.828478 | 8.79E-55 | -1.69E-46 |
| MS.gene052479 | MS.gene91307 | 0.814901 | 1.22E-51 | -1.69E-46 |
| MS.gene052479 | MS.gene92135 | 0.835439 | 1.68E-56 | -1.69E-46 |
| MS.gene052479 | MS.gene92572 | 0.812545 | 4.02E-51 | -1.69E-46 |
| MS.gene052479 | MS.gene95469 | 0.821706 | 3.50E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene96121 | 0.812123 | 4.97E-51 | -1.69E-46 |
| MS.gene052479 | MS.gene96156 | 0.820316 | 7.32E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene96245 | 0.823239 | 1.54E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene96690 | 0.817143 | 3.84E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052479.t1 | MTR_4g088905 | 98.574 | 491 | 7 | 0 | 1 | 491 | 1 | 491 | 0.0 | 987 |
| MS.gene052479.t1 | MTR_2g103130 | 44.000 | 125 | 70 | 0 | 259 | 383 | 29 | 153 | 6.90e-30 | 114 |
| MS.gene052479.t1 | MTR_2g103130 | 46.535 | 101 | 54 | 0 | 154 | 254 | 53 | 153 | 7.10e-29 | 112 |
| MS.gene052479.t1 | MTR_2g103130 | 47.826 | 92 | 47 | 1 | 400 | 491 | 63 | 153 | 5.02e-25 | 101 |
| MS.gene052479.t1 | MTR_7g079520 | 49.091 | 110 | 55 | 1 | 277 | 386 | 71 | 179 | 5.09e-29 | 113 |
| MS.gene052479.t1 | MTR_7g079520 | 45.545 | 101 | 55 | 0 | 151 | 251 | 74 | 174 | 3.04e-27 | 108 |
| MS.gene052479.t1 | MTR_7g079520 | 50.526 | 95 | 46 | 1 | 392 | 486 | 79 | 172 | 4.15e-26 | 105 |
| MS.gene052479.t1 | MTR_4g016930 | 49.123 | 114 | 51 | 2 | 147 | 253 | 183 | 296 | 8.54e-27 | 110 |
| MS.gene052479.t1 | MTR_4g016930 | 33.854 | 192 | 103 | 10 | 312 | 485 | 106 | 291 | 1.47e-21 | 95.1 |
| MS.gene052479.t1 | MTR_4g016930 | 40.385 | 104 | 59 | 1 | 277 | 377 | 188 | 291 | 1.76e-19 | 89.4 |
| MS.gene052479.t1 | MTR_8g107460 | 33.333 | 111 | 70 | 1 | 3 | 109 | 254 | 364 | 1.34e-13 | 72.4 |
| MS.gene052479.t1 | MTR_2g010750 | 33.708 | 89 | 59 | 0 | 14 | 102 | 24 | 112 | 1.52e-13 | 67.8 |
| MS.gene052479.t1 | MTR_1g023140 | 31.132 | 106 | 69 | 1 | 3 | 104 | 6 | 111 | 2.12e-12 | 64.3 |
| MS.gene052479.t1 | MTR_7g009070 | 34.568 | 81 | 53 | 0 | 24 | 104 | 51 | 131 | 2.16e-12 | 64.7 |
| MS.gene052479.t1 | MTR_2g082590 | 34.831 | 89 | 58 | 0 | 23 | 111 | 34 | 122 | 2.68e-12 | 64.3 |
| MS.gene052479.t1 | MTR_3g112410 | 33.735 | 83 | 55 | 0 | 24 | 106 | 31 | 113 | 6.14e-12 | 62.8 |
| MS.gene052479.t1 | MTR_2g082590 | 34.091 | 88 | 58 | 0 | 24 | 111 | 48 | 135 | 4.23e-11 | 61.2 |
| MS.gene052479.t1 | MTR_8g005320 | 27.778 | 108 | 74 | 2 | 2 | 105 | 25 | 132 | 5.06e-11 | 60.8 |
| MS.gene052479.t1 | MTR_4g081380 | 30.208 | 96 | 67 | 0 | 16 | 111 | 27 | 122 | 6.90e-11 | 60.1 |
| MS.gene052479.t1 | MTR_7g073680 | 28.571 | 112 | 76 | 1 | 2 | 109 | 23 | 134 | 7.09e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052479.t1 | AT4G04950 | 72.819 | 493 | 127 | 4 | 1 | 491 | 1 | 488 | 0.0 | 728 |
| MS.gene052479.t1 | AT4G32580 | 64.242 | 165 | 48 | 3 | 1 | 164 | 1 | 155 | 1.31e-66 | 212 |
| MS.gene052479.t1 | AT3G54900 | 57.843 | 102 | 43 | 0 | 278 | 379 | 64 | 165 | 3.02e-32 | 121 |
| MS.gene052479.t1 | AT3G54900 | 52.000 | 100 | 48 | 0 | 151 | 250 | 66 | 165 | 5.68e-29 | 112 |
| MS.gene052479.t1 | AT3G54900 | 52.632 | 95 | 44 | 1 | 392 | 486 | 71 | 164 | 4.66e-26 | 104 |
| MS.gene052479.t1 | AT3G15660 | 45.370 | 108 | 59 | 0 | 147 | 254 | 56 | 163 | 1.31e-28 | 111 |
| MS.gene052479.t1 | AT3G15660 | 46.154 | 104 | 56 | 0 | 280 | 383 | 60 | 163 | 5.35e-28 | 110 |
| MS.gene052479.t1 | AT3G15660 | 42.157 | 102 | 58 | 1 | 390 | 491 | 63 | 163 | 1.51e-24 | 100 |
| MS.gene052479.t1 | AT3G15660 | 45.370 | 108 | 59 | 0 | 147 | 254 | 56 | 163 | 1.31e-28 | 111 |
| MS.gene052479.t1 | AT3G15660 | 46.154 | 104 | 56 | 0 | 280 | 383 | 60 | 163 | 5.35e-28 | 110 |
| MS.gene052479.t1 | AT3G15660 | 42.157 | 102 | 58 | 1 | 390 | 491 | 63 | 163 | 1.51e-24 | 100 |
| MS.gene052479.t1 | AT2G38270 | 46.018 | 113 | 54 | 2 | 147 | 252 | 180 | 292 | 1.16e-26 | 109 |
| MS.gene052479.t1 | AT2G38270 | 46.429 | 112 | 53 | 3 | 382 | 490 | 186 | 293 | 2.42e-24 | 103 |
| MS.gene052479.t1 | AT2G38270 | 41.284 | 109 | 61 | 1 | 277 | 382 | 185 | 293 | 3.06e-22 | 97.1 |
| MS.gene052479.t1 | AT3G17880 | 33.636 | 110 | 69 | 1 | 3 | 108 | 263 | 372 | 6.45e-14 | 73.6 |
| MS.gene052479.t1 | AT3G17880 | 33.636 | 110 | 69 | 1 | 3 | 108 | 270 | 379 | 6.50e-14 | 73.6 |
| MS.gene052479.t1 | AT1G11530 | 37.805 | 82 | 51 | 0 | 21 | 102 | 24 | 105 | 3.87e-13 | 66.6 |
| MS.gene052479.t1 | AT3G56420 | 36.170 | 94 | 60 | 0 | 13 | 106 | 54 | 147 | 7.37e-13 | 66.6 |
| MS.gene052479.t1 | AT3G56420 | 36.170 | 94 | 60 | 0 | 13 | 106 | 54 | 147 | 7.37e-13 | 66.6 |
| MS.gene052479.t1 | AT3G56420 | 36.170 | 94 | 60 | 0 | 13 | 106 | 54 | 147 | 7.37e-13 | 66.6 |
| MS.gene052479.t1 | AT2G40790 | 33.333 | 96 | 64 | 0 | 11 | 106 | 52 | 147 | 2.21e-12 | 65.5 |
| MS.gene052479.t1 | AT2G40790 | 33.333 | 96 | 64 | 0 | 11 | 106 | 52 | 147 | 2.21e-12 | 65.5 |
| MS.gene052479.t1 | AT1G19730 | 33.333 | 96 | 63 | 1 | 13 | 107 | 20 | 115 | 2.87e-11 | 61.2 |
| MS.gene052479.t1 | AT1G45145 | 27.778 | 108 | 69 | 1 | 5 | 112 | 20 | 118 | 3.24e-11 | 60.8 |
| MS.gene052479.t1 | AT3G51030 | 30.435 | 92 | 64 | 0 | 13 | 104 | 20 | 111 | 3.33e-11 | 60.8 |
Find 130 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGGTGGTGCTTCACTTC+TGG | 0.087525 | 4.3:+24182795 | MS.gene052479:CDS |
| CGATCTTCAATGGTCTCTTT+TGG | 0.228425 | 4.3:-24185267 | None:intergenic |
| TCCGGTGGTGCTTCACTTCT+GGG | 0.239526 | 4.3:+24182796 | MS.gene052479:CDS |
| TTTCTGCTAAATCCACATTT+TGG | 0.245986 | 4.3:-24184643 | None:intergenic |
| GCATGAGAGTGGGGAGTTAA+AGG | 0.272046 | 4.3:+24184831 | MS.gene052479:CDS |
| CTGGAAAGCTTGGTCAATTC+AGG | 0.285616 | 4.3:+24184970 | MS.gene052479:CDS |
| GAGGAGGGTGTGGTGGATTT+TGG | 0.308068 | 4.3:+24185393 | MS.gene052479:CDS |
| TGAGGTGAGACAAGGGATTA+AGG | 0.310979 | 4.3:+24185440 | MS.gene052479:CDS |
| CCCTCATACCCATTTCTTAA+GGG | 0.316341 | 4.3:+24182880 | MS.gene052479:CDS |
| GGATTAAGGTATTCTCAAAT+TGG | 0.317243 | 4.3:+24185454 | MS.gene052479:CDS |
| GATATATAGTTGAGGATAAC+TGG | 0.318174 | 4.3:-24185154 | None:intergenic |
| GAAACAAATATAACAGATTC+AGG | 0.318310 | 4.3:+24184889 | MS.gene052479:CDS |
| AAACCGCATCTTGGAGCATC+TGG | 0.332380 | 4.3:-24185342 | None:intergenic |
| AAGGAAGAGAAGGTTAAGTT+TGG | 0.337919 | 4.3:+24184682 | MS.gene052479:CDS |
| TCCCTCATACCCATTTCTTA+AGG | 0.350830 | 4.3:+24182879 | MS.gene052479:CDS |
| GAAGAGTTGGTCCATGTGTT+TGG | 0.361641 | 4.3:-24182837 | None:intergenic |
| ATTATGGAGCTGCGAAATAA+TGG | 0.375569 | 4.3:+24185531 | MS.gene052479:CDS |
| CTGAGGAAATGTGGGCCAAT+TGG | 0.383188 | 4.3:-24184758 | None:intergenic |
| AAAACCGAACCCTTAAGAAA+TGG | 0.386272 | 4.3:-24182889 | None:intergenic |
| ACCTTGTTGGCTAAACTTGA+TGG | 0.387462 | 4.3:-24184388 | None:intergenic |
| TTTCTTCAAACGATCTTCAA+TGG | 0.395624 | 4.3:-24185277 | None:intergenic |
| CTCAGTTATGCTGTTTATGA+AGG | 0.400437 | 4.3:+24184993 | MS.gene052479:CDS |
| GACTCAAGGTTTATTCAAAC+TGG | 0.401770 | 4.3:+24185130 | MS.gene052479:CDS |
| GCCGCTTCTCCTGCTAGTCT+TGG | 0.404417 | 4.3:+24184445 | MS.gene052479:CDS |
| CAGAAAACTTTACATGAGAA+AGG | 0.407675 | 4.3:+24185237 | MS.gene052479:CDS |
| AAACCACACTTAGGTTCATC+TGG | 0.410689 | 4.3:-24185021 | None:intergenic |
| GCTAGTCTTGGGATGGCTGC+AGG | 0.430218 | 4.3:+24184457 | MS.gene052479:CDS |
| TACTGCAAAGGAGAACTTGT+TGG | 0.433798 | 4.3:+24184784 | MS.gene052479:CDS |
| CCCTTCATGAAGAGCATCAC+AGG | 0.434696 | 4.3:-24185315 | None:intergenic |
| AGGTGGTTGTGATATCATTA+TGG | 0.435007 | 4.3:+24185515 | MS.gene052479:CDS |
| AATAAACCTTGAGTCCTTGT+CGG | 0.438536 | 4.3:-24185122 | None:intergenic |
| AGAAAACTTTACATGAGAAA+GGG | 0.438785 | 4.3:+24185238 | MS.gene052479:CDS |
| CCCTGTGATGCTCTTCATGA+AGG | 0.447763 | 4.3:+24185314 | MS.gene052479:CDS |
| CCGCTTCTCCTGCTAGTCTT+GGG | 0.449817 | 4.3:+24184446 | MS.gene052479:CDS |
| AGCCTCTCGGCTGGAAAGCT+TGG | 0.460278 | 4.3:+24184960 | MS.gene052479:CDS |
| ACCCTTAAGAAATGGGTATG+AGG | 0.465816 | 4.3:-24182881 | None:intergenic |
| AAACCGAACCCTTAAGAAAT+GGG | 0.473857 | 4.3:-24182888 | None:intergenic |
| TTATCCTCAACTATATATCA+AGG | 0.480228 | 4.3:+24185158 | MS.gene052479:CDS |
| TGAGTACAAATTTAGCCTCT+CGG | 0.483522 | 4.3:+24184947 | MS.gene052479:CDS |
| TTCAGTTGACTACTAAGCCC+TGG | 0.486626 | 4.3:-24184553 | None:intergenic |
| TCGAGAGAAAATGGGTGGTT+CGG | 0.487809 | 4.3:+24182721 | None:intergenic |
| GGTGGTTCGTGGCGGTTCTC+CGG | 0.491409 | 4.3:+24182778 | MS.gene052479:CDS |
| CGCCCTTCGAGAGGAGGGTG+TGG | 0.494304 | 4.3:+24185383 | MS.gene052479:CDS |
| CTGGAACTAAAACCGCATCT+TGG | 0.495657 | 4.3:-24185351 | None:intergenic |
| AACCTAAGTGTGGTTTCAGC+AGG | 0.498764 | 4.3:+24185028 | MS.gene052479:CDS |
| AACCGCATCTTGGAGCATCT+GGG | 0.499723 | 4.3:-24185341 | None:intergenic |
| CGTGAATTCAAAGTCGGAGT+TGG | 0.501506 | 4.3:+24182751 | MS.gene052479:CDS |
| TGCTTCACTTCTGGGCGTCA+TGG | 0.501679 | 4.3:+24182804 | MS.gene052479:CDS |
| GCAGCCATCCCAAGACTAGC+AGG | 0.504695 | 4.3:-24184454 | None:intergenic |
| GAATAAGCCTCGGATATCTC+TGG | 0.508311 | 4.3:-24183017 | None:intergenic |
| TGTTATATTTGTTTCATCAA+CGG | 0.521323 | 4.3:-24184881 | None:intergenic |
| GAAGAGCATCACAGGGGAAG+AGG | 0.521960 | 4.3:-24185307 | None:intergenic |
| TACAAATTTAGCCTCTCGGC+TGG | 0.523434 | 4.3:+24184951 | MS.gene052479:CDS |
| CCTTTCATGAAAAGCAAGAC+AGG | 0.524095 | 4.3:-24184607 | None:intergenic |
| GCCCAGAAGTGAAGCACCAC+CGG | 0.524542 | 4.3:-24182797 | None:intergenic |
| TCCATCAAGTTTAGCCAACA+AGG | 0.525625 | 4.3:+24184387 | MS.gene052479:CDS |
| TTCTCCTGCTAGTCTTGGGA+TGG | 0.527299 | 4.3:+24184450 | MS.gene052479:CDS |
| AGATTTAGAGATGCCACCCT+TGG | 0.527838 | 4.3:-24184917 | None:intergenic |
| TGGCTAAGTGAGAGAAGAGT+TGG | 0.528504 | 4.3:-24182850 | None:intergenic |
| GTAGCAGGCTCAATTAACTC+TGG | 0.529527 | 4.3:+24184418 | MS.gene052479:CDS |
| AACAAGGTTTCAAAAGTAGC+AGG | 0.531530 | 4.3:+24184403 | MS.gene052479:CDS |
| TCGAAGGGCGTTTACAACTC+TGG | 0.534132 | 4.3:-24185370 | None:intergenic |
| CCCTTAAGAAATGGGTATGA+GGG | 0.534349 | 4.3:-24182880 | None:intergenic |
| GTGATGATGAGGTGAGACAA+GGG | 0.536800 | 4.3:+24185433 | MS.gene052479:CDS |
| GCAGTAAAGCTGAGGAAATG+TGG | 0.537101 | 4.3:-24184767 | None:intergenic |
| TTTCCTCAGCTTTACTGCAA+AGG | 0.540810 | 4.3:+24184772 | MS.gene052479:CDS |
| AGAATGTCAAAACTCTCAAA+CGG | 0.542425 | 4.3:-24185084 | None:intergenic |
| CTCGGATTCAGAGGTTCGTG+AGG | 0.545103 | 4.3:+24184720 | MS.gene052479:CDS |
| TACTACAAAGGTGAGCTGAT+AGG | 0.545331 | 4.3:+24185495 | MS.gene052479:CDS |
| TTCAAAGTCGGAGTTGGATG+AGG | 0.547629 | 4.3:+24182757 | MS.gene052479:CDS |
| CCTGTGATGCTCTTCATGAA+GGG | 0.548900 | 4.3:+24185315 | MS.gene052479:CDS |
| GGGTGGCATCTCTAAATCTA+CGG | 0.552243 | 4.3:+24184921 | MS.gene052479:CDS |
| GAGTTGGATGAGGTGGTTCG+TGG | 0.555304 | 4.3:+24182767 | MS.gene052479:CDS |
| CAATTGCTATGCATGAGAGT+GGG | 0.557425 | 4.3:+24184821 | MS.gene052479:CDS |
| TGCAAAGGAGAACTTGTTGG+CGG | 0.559580 | 4.3:+24184787 | MS.gene052479:CDS |
| TGGCAAGACTGTTGACACAT+TGG | 0.563114 | 4.3:+24184354 | MS.gene052479:CDS |
| GAAGTCAACTTTATCTGAGT+AGG | 0.564861 | 4.3:+24185560 | MS.gene052479:CDS |
| GAAAACTTTACATGAGAAAG+GGG | 0.565814 | 4.3:+24185239 | MS.gene052479:CDS |
| TATCCTCAACTATATATCAA+GGG | 0.567280 | 4.3:+24185159 | MS.gene052479:CDS |
| TGATATCCTCTCGGATTCAG+AGG | 0.567907 | 4.3:+24184711 | MS.gene052479:CDS |
| CACCACACCCTCCTCTCGAA+GGG | 0.574638 | 4.3:-24185385 | None:intergenic |
| TCAGTTATGCTGTTTATGAA+GGG | 0.574849 | 4.3:+24184994 | MS.gene052479:CDS |
| AGTGATGATGAGGTGAGACA+AGG | 0.575718 | 4.3:+24185432 | MS.gene052479:CDS |
| TTTCCTCAGCTTTACTACAA+AGG | 0.576171 | 4.3:+24185483 | MS.gene052479:CDS |
| CCACCACACCCTCCTCTCGA+AGG | 0.579100 | 4.3:-24185386 | None:intergenic |
| CAAGACTGTTGACACATTGG+AGG | 0.580038 | 4.3:+24184357 | MS.gene052479:CDS |
| CCCAAGACTAGCAGGAGAAG+CGG | 0.585473 | 4.3:-24184446 | None:intergenic |
| CCTTCGAGAGGAGGGTGTGG+TGG | 0.585829 | 4.3:+24185386 | MS.gene052479:CDS |
| AAAGTCGGAGTTGGATGAGG+TGG | 0.589138 | 4.3:+24182760 | MS.gene052479:CDS |
| GCAATTGCTATGCATGAGAG+TGG | 0.592542 | 4.3:+24184820 | MS.gene052479:CDS |
| TAGTAAAGCTGAGGAAAGGT+AGG | 0.596200 | 4.3:-24185477 | None:intergenic |
| AAGACTGTTGACACATTGGA+GGG | 0.599834 | 4.3:+24184358 | MS.gene052479:CDS |
| CAGTAAAGCTGAGGAAATGT+GGG | 0.600655 | 4.3:-24184766 | None:intergenic |
| TTCCTGCTGAAACCACACTT+AGG | 0.600780 | 4.3:-24185030 | None:intergenic |
| GCAAAGGAGAACTTGTTGGC+GGG | 0.600992 | 4.3:+24184788 | MS.gene052479:CDS |
| TGTAAACGCCCTTCGAGAGG+AGG | 0.601040 | 4.3:+24185377 | MS.gene052479:CDS |
| ATCCTCAACTATATATCAAG+GGG | 0.601469 | 4.3:+24185160 | MS.gene052479:CDS |
| TGGTGGATCAGACATTGTGT+TGG | 0.602781 | 4.3:+24185191 | MS.gene052479:CDS |
| GGTTCGTGGCGGTTCTCCGG+TGG | 0.602795 | 4.3:+24182781 | MS.gene052479:CDS |
| AACAGATTCAGGAAACGCCA+AGG | 0.605465 | 4.3:+24184900 | MS.gene052479:CDS |
| AGCAGAGACAGAATAAGCCT+CGG | 0.606508 | 4.3:-24183027 | None:intergenic |
| GTAAACGCCCTTCGAGAGGA+GGG | 0.607590 | 4.3:+24185378 | MS.gene052479:CDS |
| TCGGATTCAGAGGTTCGTGA+GGG | 0.608082 | 4.3:+24184721 | MS.gene052479:CDS |
| ACCCCAGATGCTCCAAGATG+CGG | 0.614566 | 4.3:+24185339 | MS.gene052479:CDS |
| AGTCCTGAAGAGCCAAAATG+TGG | 0.615193 | 4.3:+24184631 | MS.gene052479:CDS |
| ACCGCATCTTGGAGCATCTG+GGG | 0.616858 | 4.3:-24185340 | None:intergenic |
| GTGTGAAGCTTCCAAACACA+TGG | 0.616893 | 4.3:+24182826 | MS.gene052479:CDS |
| TTTGTAGTAAAGCTGAGGAA+AGG | 0.624743 | 4.3:-24185481 | None:intergenic |
| AGTTGTAAACGCCCTTCGAG+AGG | 0.628177 | 4.3:+24185374 | MS.gene052479:CDS |
| TCTCCTTTGCAGTAAAGCTG+AGG | 0.629246 | 4.3:-24184775 | None:intergenic |
| ACAGATTCAGGAAACGCCAA+GGG | 0.630607 | 4.3:+24184901 | MS.gene052479:CDS |
| AATTGCTATGCATGAGAGTG+GGG | 0.633961 | 4.3:+24184822 | MS.gene052479:CDS |
| GCGAGACGTGAATTCAAAGT+CGG | 0.634026 | 4.3:+24182745 | MS.gene052479:CDS |
| TAAGTGTGGTTTCAGCAGGA+AGG | 0.635846 | 4.3:+24185032 | MS.gene052479:CDS |
| AGAAGTCCGACAAGGACTCA+AGG | 0.641229 | 4.3:+24185116 | MS.gene052479:CDS |
| CCTTCATGAAGAGCATCACA+GGG | 0.642910 | 4.3:-24185314 | None:intergenic |
| TGATATATTAAGTGATGATG+AGG | 0.646285 | 4.3:+24185422 | MS.gene052479:CDS |
| TTGGATGAGGTGGTTCGTGG+CGG | 0.646766 | 4.3:+24182770 | MS.gene052479:CDS |
| GATTCAGGAAACGCCAAGGG+TGG | 0.648240 | 4.3:+24184904 | MS.gene052479:CDS |
| TCACCTTTGTAGTAAAGCTG+AGG | 0.655861 | 4.3:-24185486 | None:intergenic |
| TACAAAGGTGAGCTGATAGG+TGG | 0.660078 | 4.3:+24185498 | MS.gene052479:CDS |
| GACCAAGCTTTCCAGCCGAG+AGG | 0.661429 | 4.3:-24184962 | None:intergenic |
| AAACCAGATGAACCTAAGTG+TGG | 0.682029 | 4.3:+24185018 | MS.gene052479:CDS |
| CATCATCGAGAGAAAATGGG+TGG | 0.688702 | 4.3:+24182716 | None:intergenic |
| CACGAACCTCTGAATCCGAG+AGG | 0.707101 | 4.3:-24184717 | None:intergenic |
| ATGGGTATGAGGGAAATCAG+TGG | 0.723809 | 4.3:-24182870 | None:intergenic |
| ACTGATGAAGAAGTCCGACA+AGG | 0.725862 | 4.3:+24185108 | MS.gene052479:CDS |
| TCCTCAACTATATATCAAGG+GGG | 0.735477 | 4.3:+24185161 | MS.gene052479:CDS |
| AGAACAACCAGAGATATCCG+AGG | 0.738447 | 4.3:+24183010 | MS.gene052479:CDS |
| CTTCATGAAGAGCATCACAG+GGG | 0.778155 | 4.3:-24185313 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTATTTTTTTT+AGG | + | chr4.3:24182977-24182996 | MS.gene052479:intron | 0.0% |
| !! | AAAATATAAGTATTATTTGT+AGG | - | chr4.3:24183896-24183915 | None:intergenic | 10.0% |
| !! | GAAAATAAAAAAATAGCTTA+TGG | + | chr4.3:24183440-24183459 | MS.gene052479:intron | 15.0% |
| !!! | ATAAAAAAAGATAACTCTTT+TGG | - | chr4.3:24184212-24184231 | None:intergenic | 15.0% |
| !!! | TAAAAAAAGATAACTCTTTT+GGG | - | chr4.3:24184211-24184230 | None:intergenic | 15.0% |
| !! | AAAATAAAGCCAATTTAAAC+AGG | + | chr4.3:24183532-24183551 | MS.gene052479:intron | 20.0% |
| !! | ACTATATTCCATTGTTTAAT+TGG | - | chr4.3:24183779-24183798 | None:intergenic | 20.0% |
| !! | CAAATGAATATCAAAATTTG+GGG | + | chr4.3:24183557-24183576 | MS.gene052479:intron | 20.0% |
| !! | CCAAATGAATATCAAAATTT+GGG | + | chr4.3:24183556-24183575 | MS.gene052479:intron | 20.0% |
| !! | TCCAAATGAATATCAAAATT+TGG | + | chr4.3:24183555-24183574 | MS.gene052479:intron | 20.0% |
| !! | TGTTATATTTGTTTCATCAA+CGG | - | chr4.3:24184884-24184903 | None:intergenic | 20.0% |
| !! | TTTATTGAAAACTTGATATC+CGG | - | chr4.3:24183420-24183439 | None:intergenic | 20.0% |
| !!! | AAAAGTTGTTGATATTTTGA+AGG | + | chr4.3:24184663-24184682 | MS.gene052479:CDS | 20.0% |
| !!! | AATTCATTCTCATAGTTTTT+CGG | + | chr4.3:24183174-24183193 | MS.gene052479:intron | 20.0% |
| !!! | ATTAAGTTGTTTATTCAAAC+AGG | - | chr4.3:24183256-24183275 | None:intergenic | 20.0% |
| !!! | GTTTAAATTGGCTTTATTTT+AGG | - | chr4.3:24183532-24183551 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATTCAAACA+GGG | - | chr4.3:24183255-24183274 | None:intergenic | 20.0% |
| !!! | TTTTGTTTAAGTTGCATTAT+AGG | + | chr4.3:24183197-24183216 | MS.gene052479:intron | 20.0% |
| ! | AAAAAAGTAAAGTTCAACCA+GGG | + | chr4.3:24184536-24184555 | MS.gene052479:CDS | 25.0% |
| ! | AAATTGCAAAGGGAATAAAA+AGG | - | chr4.3:24182929-24182948 | None:intergenic | 25.0% |
| ! | AAGTAAGATGAAAATTGCAA+AGG | - | chr4.3:24182940-24182959 | None:intergenic | 25.0% |
| ! | AATTGCAAAGGGAATAAAAA+GGG | - | chr4.3:24182928-24182947 | None:intergenic | 25.0% |
| ! | AGAAAACTTTACATGAGAAA+GGG | + | chr4.3:24185238-24185257 | MS.gene052479:CDS | 25.0% |
| ! | AGTAAGATGAAAATTGCAAA+GGG | - | chr4.3:24182939-24182958 | None:intergenic | 25.0% |
| ! | ATAAGTATTATTTGTAGGTG+AGG | - | chr4.3:24183891-24183910 | None:intergenic | 25.0% |
| ! | ATCTTAAAGAGCTTATGAAA+TGG | + | chr4.3:24183378-24183397 | MS.gene052479:intron | 25.0% |
| ! | ATGATTCATACTGTCAATAT+GGG | + | chr4.3:24184252-24184271 | MS.gene052479:intron | 25.0% |
| ! | ATTAGTAGTTATTATCTGTC+AGG | + | chr4.3:24184330-24184349 | MS.gene052479:intron | 25.0% |
| ! | GAAACAAATATAACAGATTC+AGG | + | chr4.3:24184889-24184908 | MS.gene052479:CDS | 25.0% |
| ! | GAACTTAATATTATTGTTGC+TGG | + | chr4.3:24183111-24183130 | MS.gene052479:intron | 25.0% |
| ! | TAAATTACATGTGATTAGGT+GGG | + | chr4.3:24183841-24183860 | MS.gene052479:intron | 25.0% |
| ! | TATCCTCAACTATATATCAA+GGG | + | chr4.3:24185159-24185178 | MS.gene052479:CDS | 25.0% |
| ! | TGATCAATCCAATTAAACAA+TGG | + | chr4.3:24183768-24183787 | MS.gene052479:intron | 25.0% |
| ! | TGGTTAAATTACATGTGATT+AGG | + | chr4.3:24183837-24183856 | MS.gene052479:intron | 25.0% |
| ! | TTAAATTACATGTGATTAGG+TGG | + | chr4.3:24183840-24183859 | MS.gene052479:intron | 25.0% |
| ! | TTATCCTCAACTATATATCA+AGG | + | chr4.3:24185158-24185177 | MS.gene052479:CDS | 25.0% |
| !! | ATAAGCTAATTTTATGACAG+AGG | + | chr4.3:24183302-24183321 | MS.gene052479:intron | 25.0% |
| !! | TAAGCTAATTTTATGACAGA+GGG | + | chr4.3:24183303-24183322 | MS.gene052479:intron | 25.0% |
| !! | TGATATATTAAGTGATGATG+AGG | + | chr4.3:24185422-24185441 | MS.gene052479:CDS | 25.0% |
| !!! | CCCAAATTTTGATATTCATT+TGG | - | chr4.3:24183559-24183578 | None:intergenic | 25.0% |
| !!! | GCAGATTTTTAATTAAGACT+TGG | + | chr4.3:24184142-24184161 | MS.gene052479:intron | 25.0% |
| !!! | TCAAAACTTTGTTGATTCTT+AGG | + | chr4.3:24183150-24183169 | MS.gene052479:intron | 25.0% |
| ACCTTGAAGAAGACAAAAAA+AGG | - | chr4.3:24183056-24183075 | None:intergenic | 30.0% | |
| AGAATGTCAAAACTCTCAAA+CGG | - | chr4.3:24185087-24185106 | None:intergenic | 30.0% | |
| ATCCTCAACTATATATCAAG+GGG | + | chr4.3:24185160-24185179 | MS.gene052479:CDS | 30.0% | |
| ATTGCAAAGGGAATAAAAAG+GGG | - | chr4.3:24182927-24182946 | None:intergenic | 30.0% | |
| CAGAAAACTTTACATGAGAA+AGG | + | chr4.3:24185237-24185256 | MS.gene052479:CDS | 30.0% | |
| GAAAAAAGTAAAGTTCAACC+AGG | + | chr4.3:24184535-24184554 | MS.gene052479:CDS | 30.0% | |
| GAAAACTTTACATGAGAAAG+GGG | + | chr4.3:24185239-24185258 | MS.gene052479:CDS | 30.0% | |
| GATATATAGTTGAGGATAAC+TGG | - | chr4.3:24185157-24185176 | None:intergenic | 30.0% | |
| GATGATTCATACTGTCAATA+TGG | + | chr4.3:24184251-24184270 | MS.gene052479:intron | 30.0% | |
| TCAATATGGGATGTCAATAT+GGG | + | chr4.3:24184265-24184284 | MS.gene052479:intron | 30.0% | |
| TCATTTGGACCTGTTTAAAT+TGG | - | chr4.3:24183544-24183563 | None:intergenic | 30.0% | |
| TTCACTATTTCAACGTGTTA+TGG | + | chr4.3:24183597-24183616 | MS.gene052479:intron | 30.0% | |
| TTTCTTCAAACGATCTTCAA+TGG | - | chr4.3:24185280-24185299 | None:intergenic | 30.0% | |
| ! | AAGGATGTTTTCAAAGATCA+CGG | + | chr4.3:24184850-24184869 | MS.gene052479:CDS | 30.0% |
| ! | GGATTAAGGTATTCTCAAAT+TGG | + | chr4.3:24185454-24185473 | MS.gene052479:CDS | 30.0% |
| ! | TCAGTTATGCTGTTTATGAA+GGG | + | chr4.3:24184994-24185013 | MS.gene052479:CDS | 30.0% |
| ! | TTTCTGCTAAATCCACATTT+TGG | - | chr4.3:24184646-24184665 | None:intergenic | 30.0% |
| ! | TTTCTGTTTTCTTAGTAGAG+TGG | + | chr4.3:24183223-24183242 | MS.gene052479:intron | 30.0% |
| !! | TGATATTTTGAAGGAAGAGA+AGG | + | chr4.3:24184672-24184691 | MS.gene052479:CDS | 30.0% |
| !!! | TCCTTTTTTTGTCTTCTTCA+AGG | + | chr4.3:24183052-24183071 | MS.gene052479:CDS | 30.0% |
| AAAACCGAACCCTTAAGAAA+TGG | - | chr4.3:24182892-24182911 | None:intergenic | 35.0% | |
| AAACCGAACCCTTAAGAAAT+GGG | - | chr4.3:24182891-24182910 | None:intergenic | 35.0% | |
| AACAAGGTTTCAAAAGTAGC+AGG | + | chr4.3:24184403-24184422 | MS.gene052479:CDS | 35.0% | |
| AAGCACAAGTGAGACTATTT+GGG | - | chr4.3:24183495-24183514 | None:intergenic | 35.0% | |
| AAGGAAGAGAAGGTTAAGTT+TGG | + | chr4.3:24184682-24184701 | MS.gene052479:CDS | 35.0% | |
| AATAAACCTTGAGTCCTTGT+CGG | - | chr4.3:24185125-24185144 | None:intergenic | 35.0% | |
| AATTTCCCAGTGAATACTTG+TGG | - | chr4.3:24183989-24184008 | None:intergenic | 35.0% | |
| AGGTGGTTGTGATATCATTA+TGG | + | chr4.3:24185515-24185534 | MS.gene052479:CDS | 35.0% | |
| ATACCCATTTCTTAAGGGTT+CGG | + | chr4.3:24182885-24182904 | MS.gene052479:intron | 35.0% | |
| ATGAACCTAATAAGCAGAGT+TGG | - | chr4.3:24183701-24183720 | None:intergenic | 35.0% | |
| ATTAGTCCACAAGTATTCAC+TGG | + | chr4.3:24183980-24183999 | MS.gene052479:intron | 35.0% | |
| ATTATGGAGCTGCGAAATAA+TGG | + | chr4.3:24185531-24185550 | MS.gene052479:CDS | 35.0% | |
| GACTCAAGGTTTATTCAAAC+TGG | + | chr4.3:24185130-24185149 | MS.gene052479:CDS | 35.0% | |
| GTAGTTATTATCTGTCAGGA+TGG | + | chr4.3:24184334-24184353 | MS.gene052479:intron | 35.0% | |
| GTCAATATGGGATGTCAATA+TGG | + | chr4.3:24184264-24184283 | MS.gene052479:intron | 35.0% | |
| TAAGCACAAGTGAGACTATT+TGG | - | chr4.3:24183496-24183515 | None:intergenic | 35.0% | |
| TCCTCAACTATATATCAAGG+GGG | + | chr4.3:24185161-24185180 | MS.gene052479:CDS | 35.0% | |
| TGAGTACAAATTTAGCCTCT+CGG | + | chr4.3:24184947-24184966 | MS.gene052479:CDS | 35.0% | |
| TTAGTCCACAAGTATTCACT+GGG | + | chr4.3:24183981-24184000 | MS.gene052479:intron | 35.0% | |
| TTTCCTCAGCTTTACTACAA+AGG | + | chr4.3:24185483-24185502 | MS.gene052479:CDS | 35.0% | |
| TTTGTAGTAAAGCTGAGGAA+AGG | - | chr4.3:24185484-24185503 | None:intergenic | 35.0% | |
| ! | CAAACGGAACATTTTCTTGT+CGG | - | chr4.3:24185071-24185090 | None:intergenic | 35.0% |
| ! | CTCAGTTATGCTGTTTATGA+AGG | + | chr4.3:24184993-24185012 | MS.gene052479:CDS | 35.0% |
| ! | GCTTGAAGAAGTTTTCCAAT+TGG | + | chr4.3:24184743-24184762 | MS.gene052479:CDS | 35.0% |
| !! | AGATAACTCTTTTGGGTACA+TGG | - | chr4.3:24184204-24184223 | None:intergenic | 35.0% |
| !! | CTGTCTTGCTTTTCATGAAA+GGG | + | chr4.3:24184608-24184627 | MS.gene052479:CDS | 35.0% |
| !! | TGGAAGTTTTGATATCCTCT+CGG | + | chr4.3:24184702-24184721 | MS.gene052479:CDS | 35.0% |
| !!! | GGTTGGTGTTTTGTTTTTGT+TGG | + | chr4.3:24183817-24183836 | MS.gene052479:intron | 35.0% |
| !!! | TGCTACTTTTGAAACCTTGT+TGG | - | chr4.3:24184404-24184423 | None:intergenic | 35.0% |
| AAACCACACTTAGGTTCATC+TGG | - | chr4.3:24185024-24185043 | None:intergenic | 40.0% | |
| AAACCAGATGAACCTAAGTG+TGG | + | chr4.3:24185018-24185037 | MS.gene052479:CDS | 40.0% | |
| AAGACTGTTGACACATTGGA+GGG | + | chr4.3:24184358-24184377 | MS.gene052479:CDS | 40.0% | |
| AATTGCTATGCATGAGAGTG+GGG | + | chr4.3:24184822-24184841 | MS.gene052479:CDS | 40.0% | |
| ACCCTTAAGAAATGGGTATG+AGG | - | chr4.3:24182884-24182903 | None:intergenic | 40.0% | |
| ATTACATGTGATTAGGTGGG+AGG | + | chr4.3:24183844-24183863 | MS.gene052479:intron | 40.0% | |
| CAATTGCTATGCATGAGAGT+GGG | + | chr4.3:24184821-24184840 | MS.gene052479:CDS | 40.0% | |
| CAGTAAAGCTGAGGAAATGT+GGG | - | chr4.3:24184769-24184788 | None:intergenic | 40.0% | |
| CATCAATGAGTCGATGACTA+TGG | + | chr4.3:24183734-24183753 | MS.gene052479:intron | 40.0% | |
| CCCTCATACCCATTTCTTAA+GGG | + | chr4.3:24182880-24182899 | MS.gene052479:CDS | 40.0% | |
| CCCTTAAGAAATGGGTATGA+GGG | - | chr4.3:24182883-24182902 | None:intergenic | 40.0% | |
| CCTTTCATGAAAAGCAAGAC+AGG | - | chr4.3:24184610-24184629 | None:intergenic | 40.0% | |
| GTGTTGGAGATGCAAAAAAG+CGG | + | chr4.3:24185207-24185226 | MS.gene052479:CDS | 40.0% | |
| TACTACAAAGGTGAGCTGAT+AGG | + | chr4.3:24185495-24185514 | MS.gene052479:CDS | 40.0% | |
| TACTGCAAAGGAGAACTTGT+TGG | + | chr4.3:24184784-24184803 | MS.gene052479:CDS | 40.0% | |
| TAGTAAAGCTGAGGAAAGGT+AGG | - | chr4.3:24185480-24185499 | None:intergenic | 40.0% | |
| TATATCAAGGGGGAGCTTAT+TGG | + | chr4.3:24185171-24185190 | MS.gene052479:CDS | 40.0% | |
| TCAACTGAAAAAGCGATTGC+AGG | + | chr4.3:24184567-24184586 | MS.gene052479:CDS | 40.0% | |
| TCACCTTTGTAGTAAAGCTG+AGG | - | chr4.3:24185489-24185508 | None:intergenic | 40.0% | |
| TCCATCAAGTTTAGCCAACA+AGG | + | chr4.3:24184387-24184406 | MS.gene052479:CDS | 40.0% | |
| TCCCCCTTGATATATAGTTG+AGG | - | chr4.3:24185165-24185184 | None:intergenic | 40.0% | |
| TCCCTCATACCCATTTCTTA+AGG | + | chr4.3:24182879-24182898 | MS.gene052479:CDS | 40.0% | |
| TCTTGCCAACTCTGCTTATT+AGG | + | chr4.3:24183693-24183712 | MS.gene052479:intron | 40.0% | |
| TGTTGGAGATGCAAAAAAGC+GGG | + | chr4.3:24185208-24185227 | MS.gene052479:CDS | 40.0% | |
| TTACATGTGATTAGGTGGGA+GGG | + | chr4.3:24183845-24183864 | MS.gene052479:intron | 40.0% | |
| TTTCCTCAGCTTTACTGCAA+AGG | + | chr4.3:24184772-24184791 | MS.gene052479:CDS | 40.0% | |
| ! | AACAAAGTCCTGCATTTTCC+TGG | - | chr4.3:24183648-24183667 | None:intergenic | 40.0% |
| ! | ACCTTGTTGGCTAAACTTGA+TGG | - | chr4.3:24184391-24184410 | None:intergenic | 40.0% |
| ! | CGATCTTCAATGGTCTCTTT+TGG | - | chr4.3:24185270-24185289 | None:intergenic | 40.0% |
| !! | CATAGTCATCGACTCATTGA+TGG | - | chr4.3:24183736-24183755 | None:intergenic | 40.0% |
| !! | CCTGTCTTGCTTTTCATGAA+AGG | + | chr4.3:24184607-24184626 | MS.gene052479:CDS | 40.0% |
| !!! | AATCCACATTTTGGCTCTTC+AGG | - | chr4.3:24184637-24184656 | None:intergenic | 40.0% |
| !!! | AGTTTTGTTTGTGCTGTGTC+TGG | + | chr4.3:24183796-24183815 | MS.gene052479:intron | 40.0% |
| AAAACTTGATATCCGGCCCA+TGG | - | chr4.3:24183413-24183432 | None:intergenic | 45.0% | |
| AACAGATTCAGGAAACGCCA+AGG | + | chr4.3:24184900-24184919 | MS.gene052479:CDS | 45.0% | |
| AACCTAAGTGTGGTTTCAGC+AGG | + | chr4.3:24185028-24185047 | MS.gene052479:CDS | 45.0% | |
| ACAGATTCAGGAAACGCCAA+GGG | + | chr4.3:24184901-24184920 | MS.gene052479:CDS | 45.0% | |
| ACCAAGACAGAAAGTCAGTG+TGG | - | chr4.3:24184015-24184034 | None:intergenic | 45.0% | |
| ACTGATGAAGAAGTCCGACA+AGG | + | chr4.3:24185108-24185127 | MS.gene052479:CDS | 45.0% | |
| AGAACAACCAGAGATATCCG+AGG | + | chr4.3:24183010-24183029 | MS.gene052479:CDS | 45.0% | |
| AGATTTAGAGATGCCACCCT+TGG | - | chr4.3:24184920-24184939 | None:intergenic | 45.0% | |
| AGCAGAGACAGAATAAGCCT+CGG | - | chr4.3:24183030-24183049 | None:intergenic | 45.0% | |
| AGGGAATAAAAAGGGGCGAT+TGG | - | chr4.3:24182920-24182939 | None:intergenic | 45.0% | |
| AGTCCTGAAGAGCCAAAATG+TGG | + | chr4.3:24184631-24184650 | MS.gene052479:CDS | 45.0% | |
| ATGCAACTGTTCGTCACTGA+AGG | - | chr4.3:24184058-24184077 | None:intergenic | 45.0% | |
| ATGGGTATGAGGGAAATCAG+TGG | - | chr4.3:24182873-24182892 | None:intergenic | 45.0% | |
| CAAGACTGTTGACACATTGG+AGG | + | chr4.3:24184357-24184376 | MS.gene052479:CDS | 45.0% | |
| CATCTTTGCCAGGAAAATGC+AGG | + | chr4.3:24183637-24183656 | MS.gene052479:intron | 45.0% | |
| CCTGTGATGCTCTTCATGAA+GGG | + | chr4.3:24185315-24185334 | MS.gene052479:CDS | 45.0% | |
| CGTGAATTCAAAGTCGGAGT+TGG | + | chr4.3:24182751-24182770 | MS.gene052479:CDS | 45.0% | |
| CTGGAAAGCTTGGTCAATTC+AGG | + | chr4.3:24184970-24184989 | MS.gene052479:CDS | 45.0% | |
| CTGGAACTAAAACCGCATCT+TGG | - | chr4.3:24185354-24185373 | None:intergenic | 45.0% | |
| GAAGGGTTTCACTCTTGGTA+CGG | - | chr4.3:24184040-24184059 | None:intergenic | 45.0% | |
| GAATAAGCCTCGGATATCTC+TGG | - | chr4.3:24183020-24183039 | None:intergenic | 45.0% | |
| GCAATTGCTATGCATGAGAG+TGG | + | chr4.3:24184820-24184839 | MS.gene052479:CDS | 45.0% | |
| GCAGTAAAGCTGAGGAAATG+TGG | - | chr4.3:24184770-24184789 | None:intergenic | 45.0% | |
| GCGAGACGTGAATTCAAAGT+CGG | + | chr4.3:24182745-24182764 | MS.gene052479:CDS | 45.0% | |
| GGGAATAAAAAGGGGCGATT+GGG | - | chr4.3:24182919-24182938 | None:intergenic | 45.0% | |
| GGGTGGCATCTCTAAATCTA+CGG | + | chr4.3:24184921-24184940 | MS.gene052479:CDS | 45.0% | |
| GTAGCAGGCTCAATTAACTC+TGG | + | chr4.3:24184418-24184437 | MS.gene052479:CDS | 45.0% | |
| GTGTGAAGCTTCCAAACACA+TGG | + | chr4.3:24182826-24182845 | MS.gene052479:CDS | 45.0% | |
| GTTGGAGATGCAAAAAAGCG+GGG | + | chr4.3:24185209-24185228 | MS.gene052479:CDS | 45.0% | |
| TAAGTGTGGTTTCAGCAGGA+AGG | + | chr4.3:24185032-24185051 | MS.gene052479:CDS | 45.0% | |
| TACAAAGGTGAGCTGATAGG+TGG | + | chr4.3:24185498-24185517 | MS.gene052479:CDS | 45.0% | |
| TACAAATTTAGCCTCTCGGC+TGG | + | chr4.3:24184951-24184970 | MS.gene052479:CDS | 45.0% | |
| TCACTGAAGGGTTTCACTCT+TGG | - | chr4.3:24184045-24184064 | None:intergenic | 45.0% | |
| TCTCCTTTGCAGTAAAGCTG+AGG | - | chr4.3:24184778-24184797 | None:intergenic | 45.0% | |
| TGAGGTGAGACAAGGGATTA+AGG | + | chr4.3:24185440-24185459 | MS.gene052479:CDS | 45.0% | |
| TGATATCCTCTCGGATTCAG+AGG | + | chr4.3:24184711-24184730 | MS.gene052479:CDS | 45.0% | |
| TGCAACTGTTCGTCACTGAA+GGG | - | chr4.3:24184057-24184076 | None:intergenic | 45.0% | |
| TGGCAAGACTGTTGACACAT+TGG | + | chr4.3:24184354-24184373 | MS.gene052479:CDS | 45.0% | |
| TGGCTAAGTGAGAGAAGAGT+TGG | - | chr4.3:24182853-24182872 | None:intergenic | 45.0% | |
| TTCAAAGTCGGAGTTGGATG+AGG | + | chr4.3:24182757-24182776 | MS.gene052479:CDS | 45.0% | |
| TTCAGTTGACTACTAAGCCC+TGG | - | chr4.3:24184556-24184575 | None:intergenic | 45.0% | |
| TTCCTGCTGAAACCACACTT+AGG | - | chr4.3:24185033-24185052 | None:intergenic | 45.0% | |
| TTGTTTGTGCTGTGTCTGGT+TGG | + | chr4.3:24183800-24183819 | MS.gene052479:intron | 45.0% | |
| ! | AGTGATGATGAGGTGAGACA+AGG | + | chr4.3:24185432-24185451 | MS.gene052479:CDS | 45.0% |
| ! | GAAGAGTTGGTCCATGTGTT+TGG | - | chr4.3:24182840-24182859 | None:intergenic | 45.0% |
| ! | GTGATGATGAGGTGAGACAA+GGG | + | chr4.3:24185433-24185452 | MS.gene052479:CDS | 45.0% |
| ! | TGGTGGATCAGACATTGTGT+TGG | + | chr4.3:24185191-24185210 | MS.gene052479:CDS | 45.0% |
| ! | TTTTCCTGGCAAAGATGCCA+AGG | - | chr4.3:24183634-24183653 | None:intergenic | 45.0% |
| !! | CCTTCATGAAGAGCATCACA+GGG | - | chr4.3:24185317-24185336 | None:intergenic | 45.0% |
| !! | CTTCATGAAGAGCATCACAG+GGG | - | chr4.3:24185316-24185335 | None:intergenic | 45.0% |
| !! | TCCACACTGACTTTCTGTCT+TGG | + | chr4.3:24184011-24184030 | MS.gene052479:intron | 45.0% |
| !! | TGCAAAGGAGAACTTGTTGG+CGG | + | chr4.3:24184787-24184806 | MS.gene052479:CDS | 45.0% |
| !! | TAAATATTAAAAACAATATA+TGG | - | chr4.3:24183961-24183980 | None:intergenic | 5.0% |
| AAAGTCGGAGTTGGATGAGG+TGG | + | chr4.3:24182760-24182779 | MS.gene052479:CDS | 50.0% | |
| AGAAGTCCGACAAGGACTCA+AGG | + | chr4.3:24185116-24185135 | MS.gene052479:CDS | 50.0% | |
| AGTTGTAAACGCCCTTCGAG+AGG | + | chr4.3:24185374-24185393 | MS.gene052479:CDS | 50.0% | |
| ATCAAGGGGGAGCTTATTGG+TGG | + | chr4.3:24185174-24185193 | MS.gene052479:CDS | 50.0% | |
| CCCTGTGATGCTCTTCATGA+AGG | + | chr4.3:24185314-24185333 | MS.gene052479:CDS | 50.0% | |
| CTGAGGAAATGTGGGCCAAT+TGG | - | chr4.3:24184761-24184780 | None:intergenic | 50.0% | |
| GAAATGGACACCGAGTCCAT+GGG | + | chr4.3:24183394-24183413 | MS.gene052479:intron | 50.0% | |
| GCATGAGAGTGGGGAGTTAA+AGG | + | chr4.3:24184831-24184850 | MS.gene052479:CDS | 50.0% | |
| TAGGTGAGGACGCATGTTCA+AGG | - | chr4.3:24183877-24183896 | None:intergenic | 50.0% | |
| TCGGATTCAGAGGTTCGTGA+GGG | + | chr4.3:24184721-24184740 | MS.gene052479:CDS | 50.0% | |
| TGAAATGGACACCGAGTCCA+TGG | + | chr4.3:24183393-24183412 | MS.gene052479:intron | 50.0% | |
| ! | AAACCGCATCTTGGAGCATC+TGG | - | chr4.3:24185345-24185364 | None:intergenic | 50.0% |
| ! | AACCGCATCTTGGAGCATCT+GGG | - | chr4.3:24185344-24185363 | None:intergenic | 50.0% |
| !! | CCCTTCATGAAGAGCATCAC+AGG | - | chr4.3:24185318-24185337 | None:intergenic | 50.0% |
| !! | GCAAAGGAGAACTTGTTGGC+GGG | + | chr4.3:24184788-24184807 | MS.gene052479:CDS | 50.0% |
| !! | TCGAAGGGCGTTTACAACTC+TGG | - | chr4.3:24185373-24185392 | None:intergenic | 50.0% |
| !! | TTCTCCTGCTAGTCTTGGGA+TGG | + | chr4.3:24184450-24184469 | MS.gene052479:CDS | 50.0% |
| ACCCCAGATGCTCCAAGATG+CGG | + | chr4.3:24185339-24185358 | MS.gene052479:CDS | 55.0% | |
| CACGAACCTCTGAATCCGAG+AGG | - | chr4.3:24184720-24184739 | None:intergenic | 55.0% | |
| CCCAAGACTAGCAGGAGAAG+CGG | - | chr4.3:24184449-24184468 | None:intergenic | 55.0% | |
| CTCGGATTCAGAGGTTCGTG+AGG | + | chr4.3:24184720-24184739 | MS.gene052479:CDS | 55.0% | |
| GAGTTGGATGAGGTGGTTCG+TGG | + | chr4.3:24182767-24182786 | MS.gene052479:CDS | 55.0% | |
| GATTCAGGAAACGCCAAGGG+TGG | + | chr4.3:24184904-24184923 | MS.gene052479:CDS | 55.0% | |
| GTAAACGCCCTTCGAGAGGA+GGG | + | chr4.3:24185378-24185397 | MS.gene052479:CDS | 55.0% | |
| TCCGGTGGTGCTTCACTTCT+GGG | + | chr4.3:24182796-24182815 | MS.gene052479:CDS | 55.0% | |
| TCCTGGCAAAGATGCCAAGG+AGG | - | chr4.3:24183631-24183650 | None:intergenic | 55.0% | |
| TGATATCCGGCCCATGGACT+CGG | - | chr4.3:24183407-24183426 | None:intergenic | 55.0% | |
| TGCTTCACTTCTGGGCGTCA+TGG | + | chr4.3:24182804-24182823 | MS.gene052479:CDS | 55.0% | |
| TGGCAAAGATGCCAAGGAGG+CGG | - | chr4.3:24183628-24183647 | None:intergenic | 55.0% | |
| TGTAAACGCCCTTCGAGAGG+AGG | + | chr4.3:24185377-24185396 | MS.gene052479:CDS | 55.0% | |
| TTGGATGAGGTGGTTCGTGG+CGG | + | chr4.3:24182770-24182789 | MS.gene052479:CDS | 55.0% | |
| ! | ACCGCATCTTGGAGCATCTG+GGG | - | chr4.3:24185343-24185362 | None:intergenic | 55.0% |
| ! | TTATGGTTCTGCCGCCTCCT+TGG | + | chr4.3:24183614-24183633 | MS.gene052479:intron | 55.0% |
| !! | CCGCTTCTCCTGCTAGTCTT+GGG | + | chr4.3:24184446-24184465 | MS.gene052479:CDS | 55.0% |
| !! | GAAGAGCATCACAGGGGAAG+AGG | - | chr4.3:24185310-24185329 | None:intergenic | 55.0% |
| !!! | GAGGAGGGTGTGGTGGATTT+TGG | + | chr4.3:24185393-24185412 | MS.gene052479:CDS | 55.0% |
| AGCCTCTCGGCTGGAAAGCT+TGG | + | chr4.3:24184960-24184979 | MS.gene052479:CDS | 60.0% | |
| CACCACACCCTCCTCTCGAA+GGG | - | chr4.3:24185388-24185407 | None:intergenic | 60.0% | |
| CTCCGGTGGTGCTTCACTTC+TGG | + | chr4.3:24182795-24182814 | MS.gene052479:CDS | 60.0% | |
| GACCAAGCTTTCCAGCCGAG+AGG | - | chr4.3:24184965-24184984 | None:intergenic | 60.0% | |
| GCAGCCATCCCAAGACTAGC+AGG | - | chr4.3:24184457-24184476 | None:intergenic | 60.0% | |
| GCCTCCTTGGCATCTTTGCC+AGG | + | chr4.3:24183627-24183646 | MS.gene052479:intron | 60.0% | |
| ! | GCCCAGAAGTGAAGCACCAC+CGG | - | chr4.3:24182800-24182819 | None:intergenic | 60.0% |
| ! | GCCGCTTCTCCTGCTAGTCT+TGG | + | chr4.3:24184445-24184464 | MS.gene052479:CDS | 60.0% |
| !! | GCTAGTCTTGGGATGGCTGC+AGG | + | chr4.3:24184457-24184476 | MS.gene052479:CDS | 60.0% |
| CCACCACACCCTCCTCTCGA+AGG | - | chr4.3:24185389-24185408 | None:intergenic | 65.0% | |
| GGTGGTTCGTGGCGGTTCTC+CGG | + | chr4.3:24182778-24182797 | MS.gene052479:CDS | 65.0% | |
| TGGACACCGAGTCCATGGGC+CGG | + | chr4.3:24183398-24183417 | MS.gene052479:intron | 65.0% | |
| ! | CCTTCGAGAGGAGGGTGTGG+TGG | + | chr4.3:24185386-24185405 | MS.gene052479:CDS | 65.0% |
| CGCCCTTCGAGAGGAGGGTG+TGG | + | chr4.3:24185383-24185402 | MS.gene052479:CDS | 70.0% | |
| GGTTCGTGGCGGTTCTCCGG+TGG | + | chr4.3:24182781-24182800 | MS.gene052479:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 24182731 | 24185581 | 24182731 | ID=MS.gene052479 |
| chr4.3 | mRNA | 24182731 | 24185581 | 24182731 | ID=MS.gene052479.t1;Parent=MS.gene052479 |
| chr4.3 | exon | 24182731 | 24182901 | 24182731 | ID=MS.gene052479.t1.exon1;Parent=MS.gene052479.t1 |
| chr4.3 | CDS | 24182731 | 24182901 | 24182731 | ID=cds.MS.gene052479.t1;Parent=MS.gene052479.t1 |
| chr4.3 | exon | 24182999 | 24183073 | 24182999 | ID=MS.gene052479.t1.exon2;Parent=MS.gene052479.t1 |
| chr4.3 | CDS | 24182999 | 24183073 | 24182999 | ID=cds.MS.gene052479.t1;Parent=MS.gene052479.t1 |
| chr4.3 | exon | 24184352 | 24185581 | 24184352 | ID=MS.gene052479.t1.exon3;Parent=MS.gene052479.t1 |
| chr4.3 | CDS | 24184352 | 24185581 | 24184352 | ID=cds.MS.gene052479.t1;Parent=MS.gene052479.t1 |
| Gene Sequence |
| Protein sequence |
