Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34251.t1 | CAB95832.1 | 68.4 | 114 | 9 | 1 | 1 | 87 | 130 | 243 | 8.50E-32 | 147.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34251.t1 | Q8L7K9 | 54.2 | 120 | 28 | 1 | 1 | 93 | 434 | 553 | 1.6e-26 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34251.t1 | A0A1S2YW31 | 68.4 | 114 | 9 | 1 | 1 | 87 | 431 | 544 | 6.1e-32 | 147.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049701 | MS.gene34251 | 0.848466 | 6.02E-60 | -1.69E-46 |
| MS.gene051710 | MS.gene34251 | 0.833452 | 5.29E-56 | -1.69E-46 |
| MS.gene053974 | MS.gene34251 | 0.806852 | 6.73E-50 | -1.69E-46 |
| MS.gene055056 | MS.gene34251 | 0.821211 | 4.55E-53 | -1.69E-46 |
| MS.gene05531 | MS.gene34251 | 0.818824 | 1.60E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene34251 | 0.808449 | 3.08E-50 | -1.69E-46 |
| MS.gene057021 | MS.gene34251 | 0.803436 | 3.49E-49 | -1.69E-46 |
| MS.gene058294 | MS.gene34251 | 0.823922 | 1.07E-53 | -1.69E-46 |
| MS.gene058515 | MS.gene34251 | 0.826574 | 2.52E-54 | -1.69E-46 |
| MS.gene05925 | MS.gene34251 | 0.810067 | 1.39E-50 | -1.69E-46 |
| MS.gene059276 | MS.gene34251 | 0.828589 | 8.27E-55 | -1.69E-46 |
| MS.gene059458 | MS.gene34251 | 0.801465 | 8.89E-49 | -1.69E-46 |
| MS.gene059459 | MS.gene34251 | 0.812895 | 3.37E-51 | -1.69E-46 |
| MS.gene059460 | MS.gene34251 | 0.817396 | 3.37E-52 | -1.69E-46 |
| MS.gene059584 | MS.gene34251 | 0.862846 | 3.79E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34251.t1 | MTR_8g032040 | 67.826 | 115 | 10 | 1 | 1 | 88 | 431 | 545 | 5.49e-43 | 154 |
| MS.gene34251.t1 | MTR_7g076650 | 64.286 | 112 | 13 | 1 | 1 | 85 | 428 | 539 | 2.33e-38 | 141 |
| MS.gene34251.t1 | MTR_7g076650 | 64.286 | 112 | 13 | 1 | 1 | 85 | 466 | 577 | 3.26e-38 | 141 |
| MS.gene34251.t1 | MTR_8g009500 | 44.167 | 120 | 40 | 1 | 1 | 93 | 360 | 479 | 4.05e-27 | 109 |
| MS.gene34251.t1 | MTR_8g009500 | 44.167 | 120 | 40 | 1 | 1 | 93 | 454 | 573 | 6.11e-27 | 109 |
| MS.gene34251.t1 | MTR_7g076650 | 62.637 | 91 | 7 | 1 | 1 | 64 | 428 | 518 | 1.45e-26 | 108 |
| MS.gene34251.t1 | MTR_2g098580 | 51.020 | 98 | 2 | 1 | 118 | 169 | 334 | 431 | 3.52e-20 | 89.7 |
| MS.gene34251.t1 | MTR_4g066650 | 50.000 | 98 | 3 | 1 | 118 | 169 | 324 | 421 | 1.56e-19 | 87.8 |
| MS.gene34251.t1 | MTR_8g009500 | 60.000 | 55 | 22 | 0 | 1 | 55 | 454 | 508 | 1.19e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34251.t1 | AT4G00570 | 54.167 | 120 | 28 | 1 | 1 | 93 | 434 | 553 | 9.08e-33 | 126 |
| MS.gene34251.t1 | AT2G13560 | 48.246 | 114 | 32 | 1 | 1 | 87 | 449 | 562 | 4.99e-29 | 115 |
| MS.gene34251.t1 | AT1G65430 | 42.857 | 98 | 10 | 1 | 118 | 169 | 315 | 412 | 7.11e-16 | 77.4 |
| MS.gene34251.t1 | AT2G31510 | 43.878 | 98 | 9 | 1 | 118 | 169 | 252 | 349 | 4.02e-15 | 75.1 |
| MS.gene34251.t1 | AT2G31510 | 43.878 | 98 | 9 | 1 | 118 | 169 | 324 | 421 | 4.63e-15 | 74.7 |
| MS.gene34251.t1 | AT2G31510 | 43.878 | 98 | 9 | 1 | 118 | 169 | 324 | 421 | 5.55e-15 | 74.7 |
| MS.gene34251.t1 | AT1G05890 | 41.837 | 98 | 11 | 1 | 118 | 169 | 319 | 416 | 1.94e-14 | 73.2 |
| MS.gene34251.t1 | AT1G05890 | 41.837 | 98 | 11 | 1 | 118 | 169 | 361 | 458 | 1.95e-14 | 73.2 |
Find 55 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCGAAAATGTAGATTT+TGG | 0.215086 | 8.4:+47123287 | MS.gene34251:CDS |
| CCATGCCACATTGTTGTCTT+TGG | 0.217598 | 8.4:-47125505 | None:intergenic |
| AAAACTGTGTTAGATGGTTA+AGG | 0.302490 | 8.4:+47125697 | MS.gene34251:CDS |
| TTCTCTATCCATCTGTTAAT+AGG | 0.322427 | 8.4:+47123916 | MS.gene34251:CDS |
| TATTACAGATGGAATGTTGC+AGG | 0.381871 | 8.4:+47123560 | MS.gene34251:CDS |
| AAACTGTGTTAGATGGTTAA+GGG | 0.396058 | 8.4:+47125698 | MS.gene34251:CDS |
| ATGTCTAATCCCACCTTGAA+TGG | 0.407376 | 8.4:+47123102 | MS.gene34251:CDS |
| AGCAGCAGTTGAAGAAGATC+TGG | 0.417769 | 8.4:+47124375 | MS.gene34251:CDS |
| TCCTTGTAAAATATCTTCCT+TGG | 0.433489 | 8.4:-47123892 | None:intergenic |
| TCAGAAAACAATGGAGCAAA+TGG | 0.434254 | 8.4:+47125659 | MS.gene34251:intron |
| GTTAGCAGGCTTTGTTGAAA+CGG | 0.462684 | 8.4:-47123073 | None:intergenic |
| ATGCATTGCTGACAGAAACT+TGG | 0.465563 | 8.4:+47125292 | MS.gene34251:CDS |
| ATGCATTGCTGACAGAAACT+TGG | 0.465563 | 8.4:+47125334 | MS.gene34251:CDS |
| TAACAGCCTTGCTTCATACA+TGG | 0.472233 | 8.4:+47123869 | MS.gene34251:intron |
| TTAGACATGGCAAAGTTAGC+AGG | 0.473268 | 8.4:-47123087 | None:intergenic |
| ATGAACTTAAGCTGTGACTC+AGG | 0.482525 | 8.4:-47125107 | None:intergenic |
| TGAGAGATACCTTGGTATCA+AGG | 0.487107 | 8.4:-47125575 | None:intergenic |
| TATCTACACAGGCTATGCCT+TGG | 0.501872 | 8.4:+47124528 | MS.gene34251:intron |
| GAATATTAGATTAATAATGA+AGG | 0.507857 | 8.4:+47125356 | MS.gene34251:CDS |
| TTAAGTTCATAACCGAGGCT+TGG | 0.509435 | 8.4:+47125120 | MS.gene34251:CDS |
| TTGTACAAACAAACCATTCA+AGG | 0.510265 | 8.4:-47123115 | None:intergenic |
| CAACAATGTGGCATGGATCA+AGG | 0.535302 | 8.4:+47125512 | MS.gene34251:CDS |
| ACAGGCTATGCCTTGGTGCA+TGG | 0.537971 | 8.4:+47124535 | MS.gene34251:intron |
| GGTGCTCATCTTATTACAGA+TGG | 0.539673 | 8.4:+47123549 | MS.gene34251:intron |
| AGCATCAATAGCAGTGCACT+CGG | 0.544374 | 8.4:-47123222 | None:intergenic |
| GTAGTTTGCAGCTTTGTGTA+CGG | 0.556100 | 8.4:+47125472 | MS.gene34251:CDS |
| GAAGATCTGGCAGAGGGACA+TGG | 0.561961 | 8.4:+47124388 | MS.gene34251:CDS |
| CATGGTCAGACCATGGTGAA+AGG | 0.567864 | 8.4:+47124553 | MS.gene34251:CDS |
| ACTTAAGCTGTGACTCAGGT+TGG | 0.573116 | 8.4:-47125103 | None:intergenic |
| TGTTGCAGGCAGCTGCTGAA+TGG | 0.583927 | 8.4:+47123574 | MS.gene34251:CDS |
| AGTTGAAGAAGATCTGGCAG+AGG | 0.586342 | 8.4:+47124381 | MS.gene34251:CDS |
| GAAAACAATGGAGCAAATGG+TGG | 0.588829 | 8.4:+47125662 | MS.gene34251:intron |
| TCAGACCATGGTGAAAGGAC+TGG | 0.594334 | 8.4:+47124558 | MS.gene34251:CDS |
| CCAAAGACAACAATGTGGCA+TGG | 0.597743 | 8.4:+47125505 | MS.gene34251:CDS |
| ATGAAGCAGCTAAACAAGAG+GGG | 0.599723 | 8.4:+47124604 | MS.gene34251:CDS |
| GAACATTACCTATTAACAGA+TGG | 0.601866 | 8.4:-47123924 | None:intergenic |
| TATGAAGCAGCTAAACAAGA+GGG | 0.604422 | 8.4:+47124603 | MS.gene34251:CDS |
| CTGATATCTCCTTGATACCA+AGG | 0.613784 | 8.4:+47125566 | MS.gene34251:CDS |
| CCTTGCTTCATACATGGCCA+AGG | 0.615951 | 8.4:+47123875 | MS.gene34251:CDS |
| ATTTACCTATAACCAAGCCT+CGG | 0.616879 | 8.4:-47125132 | None:intergenic |
| ACAAACAAACCATTCAAGGT+GGG | 0.617272 | 8.4:-47123111 | None:intergenic |
| CCTTGGCCATGTATGAAGCA+AGG | 0.617785 | 8.4:-47123875 | None:intergenic |
| TACAAACAAACCATTCAAGG+TGG | 0.625301 | 8.4:-47123112 | None:intergenic |
| GTTGAAGAAGATCTGGCAGA+GGG | 0.628603 | 8.4:+47124382 | MS.gene34251:CDS |
| GTTTGCAGCTTTGTGTACGG+TGG | 0.633716 | 8.4:+47125475 | MS.gene34251:CDS |
| TTATGAAGCAGCTAAACAAG+AGG | 0.656326 | 8.4:+47124602 | MS.gene34251:CDS |
| TGAAGCAGCTAAACAAGAGG+GGG | 0.657257 | 8.4:+47124605 | MS.gene34251:CDS |
| ATTCAAGGTGGGATTAGACA+TGG | 0.659301 | 8.4:-47123100 | None:intergenic |
| GAACATATAGTGTTTGCCAG+TGG | 0.666995 | 8.4:+47123260 | MS.gene34251:CDS |
| ACAGCTTAAGTTCATAACCG+AGG | 0.692290 | 8.4:+47125115 | MS.gene34251:CDS |
| CATGGTCTGACCATGCACCA+AGG | 0.699416 | 8.4:-47124545 | None:intergenic |
| CTTGGTGCATGGTCAGACCA+TGG | 0.701151 | 8.4:+47124546 | MS.gene34251:CDS |
| AATCGCCAGTCCTTTCACCA+TGG | 0.713996 | 8.4:-47124563 | None:intergenic |
| ATCAAGGAGATATCAGTGTG+TGG | 0.734365 | 8.4:-47125559 | None:intergenic |
| CTAAGCCAAAGACAACAATG+TGG | 0.796951 | 8.4:+47125500 | MS.gene34251:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACATTTGATTTTTAAT+AGG | + | chr8.4:47125256-47125275 | MS.gene34251:intron | 10.0% |
| !! | AAAATTTAATGAAACTAATG+TGG | + | chr8.4:47124029-47124048 | MS.gene34251:intron | 15.0% |
| !! | AAACAAAAAATAATAATCAG+AGG | - | chr8.4:47123957-47123976 | None:intergenic | 15.0% |
| !! | AACAAAAAATAATAATCAGA+GGG | - | chr8.4:47123956-47123975 | None:intergenic | 15.0% |
| !! | ATAATAAAAACTAATGAAAG+AGG | - | chr8.4:47123319-47123338 | None:intergenic | 15.0% |
| !! | ATCTTTATAAAAATATGTCT+CGG | - | chr8.4:47124698-47124717 | None:intergenic | 15.0% |
| !! | GAATATTAGATTAATAATGA+AGG | + | chr8.4:47125356-47125375 | MS.gene34251:CDS | 15.0% |
| !! | TACAAAAATAACTATGAATT+TGG | - | chr8.4:47124921-47124940 | None:intergenic | 15.0% |
| !!! | ACTTTTATTTTGAACTTTAT+TGG | + | chr8.4:47123507-47123526 | MS.gene34251:intron | 15.0% |
| !!! | CATTTTGTTAATAATTTCAT+TGG | + | chr8.4:47123762-47123781 | MS.gene34251:intron | 15.0% |
| !!! | CTTTTATTTTGAACTTTATT+GGG | + | chr8.4:47123508-47123527 | MS.gene34251:intron | 15.0% |
| !!! | TCTTTTGATTATTTTTTGTT+GGG | + | chr8.4:47124967-47124986 | MS.gene34251:intron | 15.0% |
| !!! | TTTTTATTTTCAGAAAACAA+TGG | + | chr8.4:47125650-47125669 | MS.gene34251:intron | 15.0% |
| !!! | TTTTTTTTTTGTTTGTTTCA+TGG | + | chr8.4:47124944-47124963 | MS.gene34251:intron | 15.0% |
| !! | AAATTCATATTGCTTTAATG+TGG | - | chr8.4:47125393-47125412 | None:intergenic | 20.0% |
| !! | AATTCATATTGCTTTAATGT+GGG | - | chr8.4:47125392-47125411 | None:intergenic | 20.0% |
| !! | ATTTCAAAAACTTTGAACAA+AGG | - | chr8.4:47125177-47125196 | None:intergenic | 20.0% |
| !! | GTGACATATAAAAATAAAGT+AGG | - | chr8.4:47123802-47123821 | None:intergenic | 20.0% |
| !! | TAGATATATGGTATCATATT+TGG | - | chr8.4:47124084-47124103 | None:intergenic | 20.0% |
| !! | TAGGTAAATGAATGAATATT+TGG | + | chr8.4:47125146-47125165 | MS.gene34251:intron | 20.0% |
| !! | TCTTTATAAAAATATGTCTC+GGG | - | chr8.4:47124697-47124716 | None:intergenic | 20.0% |
| !! | TTTACTTACAATTGAGTTAT+TGG | + | chr8.4:47123480-47123499 | MS.gene34251:intron | 20.0% |
| !!! | AAAAAGTGTAAATGTTACTA+TGG | - | chr8.4:47123163-47123182 | None:intergenic | 20.0% |
| !!! | ACATTTTTGTTTGTCTATTA+CGG | + | chr8.4:47123192-47123211 | MS.gene34251:intron | 20.0% |
| !!! | CACATATTTTGTTAGATATA+TGG | - | chr8.4:47124096-47124115 | None:intergenic | 20.0% |
| !!! | CTCTATCATTTTGATAAATT+GGG | - | chr8.4:47124464-47124483 | None:intergenic | 20.0% |
| !!! | GTCTTTTGATTATTTTTTGT+TGG | + | chr8.4:47124966-47124985 | MS.gene34251:intron | 20.0% |
| !!! | TGGTGTTATTAAAGTTTATA+CGG | + | chr8.4:47125620-47125639 | MS.gene34251:intron | 20.0% |
| ! | AAATAATAATCAGAGGGAAA+AGG | - | chr8.4:47123950-47123969 | None:intergenic | 25.0% |
| ! | AACTGAAAAAAGAAGAGAAA+TGG | + | chr8.4:47124759-47124778 | MS.gene34251:intron | 25.0% |
| ! | AATAAATATGAGAGATACCT+TGG | - | chr8.4:47125586-47125605 | None:intergenic | 25.0% |
| ! | AATAATAATCAGAGGGAAAA+GGG | - | chr8.4:47123949-47123968 | None:intergenic | 25.0% |
| ! | AATCTTAATCTGTGTTCTTA+TGG | + | chr8.4:47125033-47125052 | MS.gene34251:intron | 25.0% |
| !! | ATTGATGCTTTTAATCATGT+TGG | + | chr8.4:47123236-47123255 | MS.gene34251:CDS | 25.0% |
| !! | ATTTTGAACTTTATTGGGTT+GGG | + | chr8.4:47123513-47123532 | MS.gene34251:intron | 25.0% |
| !! | CAAAATCTACATTTTCGAAA+GGG | - | chr8.4:47123289-47123308 | None:intergenic | 25.0% |
| !! | GTGTTATTAAAGTTTATACG+GGG | + | chr8.4:47125622-47125641 | MS.gene34251:intron | 25.0% |
| !! | TAAAATTTTGCGTAAGTGAT+GGG | + | chr8.4:47123385-47123404 | MS.gene34251:intron | 25.0% |
| !! | TTAAAATTTTGCGTAAGTGA+TGG | + | chr8.4:47123384-47123403 | MS.gene34251:intron | 25.0% |
| !! | TTGATGCTTTTAATCATGTT+GGG | + | chr8.4:47123237-47123256 | MS.gene34251:CDS | 25.0% |
| !! | TTTATTGTCTAACTGAGTTT+TGG | + | chr8.4:47125600-47125619 | MS.gene34251:intron | 25.0% |
| !!! | AACCAAAGTCTTATTTGTTT+TGG | - | chr8.4:47125442-47125461 | None:intergenic | 25.0% |
| !!! | AATAGAAAGTCTTGTTGATT+TGG | + | chr8.4:47124205-47124224 | MS.gene34251:intron | 25.0% |
| !!! | ACCAAAGTCTTATTTGTTTT+GGG | - | chr8.4:47125441-47125460 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTTGTCTATTACG+GGG | + | chr8.4:47123194-47123213 | MS.gene34251:intron | 25.0% |
| !!! | CATTTTTGTTTGTCTATTAC+GGG | + | chr8.4:47123193-47123212 | MS.gene34251:intron | 25.0% |
| !!! | GCTCTATCATTTTGATAAAT+TGG | - | chr8.4:47124465-47124484 | None:intergenic | 25.0% |
| !!! | GGTGTTATTAAAGTTTATAC+GGG | + | chr8.4:47125621-47125640 | MS.gene34251:intron | 25.0% |
| !!! | TATGGTGTCCTTTTTTTTAT+TGG | + | chr8.4:47125051-47125070 | MS.gene34251:intron | 25.0% |
| !!! | TATTTTGAACTTTATTGGGT+TGG | + | chr8.4:47123512-47123531 | MS.gene34251:intron | 25.0% |
| AACAGAAAGGGAAAAAAGTA+TGG | - | chr8.4:47124858-47124877 | None:intergenic | 30.0% | |
| ACAGAAGATACTAAACAGAA+AGG | - | chr8.4:47124871-47124890 | None:intergenic | 30.0% | |
| CAGAAGATACTAAACAGAAA+GGG | - | chr8.4:47124870-47124889 | None:intergenic | 30.0% | |
| GAACATTACCTATTAACAGA+TGG | - | chr8.4:47123927-47123946 | None:intergenic | 30.0% | |
| GACTTAAAAACTGTGTTAGA+TGG | + | chr8.4:47125691-47125710 | MS.gene34251:CDS | 30.0% | |
| GTTCTCAGTAGTTGAAATTA+TGG | + | chr8.4:47124250-47124269 | MS.gene34251:intron | 30.0% | |
| TCCATCTGCCAATAAAAAAA+AGG | - | chr8.4:47125062-47125081 | None:intergenic | 30.0% | |
| TCCTTGTAAAATATCTTCCT+TGG | - | chr8.4:47123895-47123914 | None:intergenic | 30.0% | |
| TTCTCTATCCATCTGTTAAT+AGG | + | chr8.4:47123916-47123935 | MS.gene34251:CDS | 30.0% | |
| TTGTACAAACAAACCATTCA+AGG | - | chr8.4:47123118-47123137 | None:intergenic | 30.0% | |
| TTTACCAAATGTAAGAGCTT+CGG | + | chr8.4:47124142-47124161 | MS.gene34251:intron | 30.0% | |
| ! | CCAAAATCTACATTTTCGAA+AGG | - | chr8.4:47123290-47123309 | None:intergenic | 30.0% |
| ! | CCTTTCGAAAATGTAGATTT+TGG | + | chr8.4:47123287-47123306 | MS.gene34251:CDS | 30.0% |
| ! | TGATGCTTTTAATCATGTTG+GGG | + | chr8.4:47123238-47123257 | MS.gene34251:CDS | 30.0% |
| ! | TGGTTTTCTGTATGTTATCT+AGG | + | chr8.4:47124049-47124068 | MS.gene34251:intron | 30.0% |
| !! | TAGATAAAAGGTGCTCTATT+AGG | - | chr8.4:47124514-47124533 | None:intergenic | 30.0% |
| !! | TTTTTGTTTGTCTATTACGG+GGG | + | chr8.4:47123195-47123214 | MS.gene34251:intron | 30.0% |
| !!! | CCAAAGTCTTATTTGTTTTG+GGG | - | chr8.4:47125440-47125459 | None:intergenic | 30.0% |
| !!! | TCCTTTTTTTTATTGGCAGA+TGG | + | chr8.4:47125058-47125077 | MS.gene34251:intron | 30.0% |
| !!! | TCTTATTTGTTTTGGGGAAA+AGG | - | chr8.4:47125434-47125453 | None:intergenic | 30.0% |
| AAAAATATGTCTCGGGAATG+TGG | - | chr8.4:47124690-47124709 | None:intergenic | 35.0% | |
| AAATGTAAGAGCTTCGGATA+TGG | + | chr8.4:47124148-47124167 | MS.gene34251:intron | 35.0% | |
| AACGACTATACAAGAGATAG+TGG | - | chr8.4:47124124-47124143 | None:intergenic | 35.0% | |
| ACAAACAAACCATTCAAGGT+GGG | - | chr8.4:47123114-47123133 | None:intergenic | 35.0% | |
| ACGACTATACAAGAGATAGT+GGG | - | chr8.4:47124123-47124142 | None:intergenic | 35.0% | |
| AGATTTCAACTACTGAGAAC+AGG | - | chr8.4:47124276-47124295 | None:intergenic | 35.0% | |
| ATATCCGAAGCTCTTACATT+TGG | - | chr8.4:47124149-47124168 | None:intergenic | 35.0% | |
| ATTTACCTATAACCAAGCCT+CGG | - | chr8.4:47125135-47125154 | None:intergenic | 35.0% | |
| CCCCAAAACAAATAAGACTT+TGG | + | chr8.4:47125437-47125456 | MS.gene34251:intron | 35.0% | |
| GGTACACACATTATTATGAG+CGG | + | chr8.4:47124800-47124819 | MS.gene34251:intron | 35.0% | |
| GTTCATGTCATAAAAGAGAC+TGG | - | chr8.4:47123991-47124010 | None:intergenic | 35.0% | |
| GTTCTCAGTAGTTGAAATCT+TGG | + | chr8.4:47124276-47124295 | MS.gene34251:intron | 35.0% | |
| TACAAACAAACCATTCAAGG+TGG | - | chr8.4:47123115-47123134 | None:intergenic | 35.0% | |
| TATGAAGCAGCTAAACAAGA+GGG | + | chr8.4:47124603-47124622 | MS.gene34251:CDS | 35.0% | |
| TATTACAGATGGAATGTTGC+AGG | + | chr8.4:47123560-47123579 | MS.gene34251:CDS | 35.0% | |
| TCAGAAAACAATGGAGCAAA+TGG | + | chr8.4:47125659-47125678 | MS.gene34251:intron | 35.0% | |
| TGGCAAAGAATTCATTAGAG+AGG | + | chr8.4:47124779-47124798 | MS.gene34251:intron | 35.0% | |
| TGTATATGACAAGATGCAAC+AGG | - | chr8.4:47123824-47123843 | None:intergenic | 35.0% | |
| TTATGAAGCAGCTAAACAAG+AGG | + | chr8.4:47124602-47124621 | MS.gene34251:CDS | 35.0% | |
| TTGAATGAACTGATGCAATG+TGG | + | chr8.4:47125228-47125247 | MS.gene34251:intron | 35.0% | |
| ! | AAAGGGAAAAAAGTATGGAG+TGG | - | chr8.4:47124853-47124872 | None:intergenic | 35.0% |
| ! | AACAATATGTACCTTTTCCC+AGG | + | chr8.4:47123432-47123451 | MS.gene34251:intron | 35.0% |
| ! | ACAATATGTACCTTTTCCCA+GGG | + | chr8.4:47123433-47123452 | MS.gene34251:intron | 35.0% |
| ! | GACATGTTTGCAAGTTTTCT+AGG | - | chr8.4:47124424-47124443 | None:intergenic | 35.0% |
| ! | GCCAAGGAAGATATTTTACA+AGG | + | chr8.4:47123891-47123910 | MS.gene34251:CDS | 35.0% |
| !! | AAGAAGCGCTGTAAAACTTA+TGG | - | chr8.4:47123703-47123722 | None:intergenic | 35.0% |
| AATAAGACTTTGGTTGCTGC+AGG | + | chr8.4:47125447-47125466 | MS.gene34251:intron | 40.0% | |
| ACACACATTATTATGAGCGG+TGG | + | chr8.4:47124803-47124822 | MS.gene34251:intron | 40.0% | |
| ACAGCTTAAGTTCATAACCG+AGG | + | chr8.4:47125115-47125134 | MS.gene34251:CDS | 40.0% | |
| ATCAAGGAGATATCAGTGTG+TGG | - | chr8.4:47125562-47125581 | None:intergenic | 40.0% | |
| ATGAACTTAAGCTGTGACTC+AGG | - | chr8.4:47125110-47125129 | None:intergenic | 40.0% | |
| ATGAAGCAGCTAAACAAGAG+GGG | + | chr8.4:47124604-47124623 | MS.gene34251:CDS | 40.0% | |
| ATGATGCAGTACGCAAAGTA+GGG | - | chr8.4:47124316-47124335 | None:intergenic | 40.0% | |
| ATGCATTGCTGACAGAAACT+TGG | + | chr8.4:47125292-47125311 | MS.gene34251:CDS | 40.0% | |
| ATGTCTAATCCCACCTTGAA+TGG | + | chr8.4:47123102-47123121 | MS.gene34251:CDS | 40.0% | |
| ATTCAAGGTGGGATTAGACA+TGG | - | chr8.4:47123103-47123122 | None:intergenic | 40.0% | |
| CACACATTATTATGAGCGGT+GGG | + | chr8.4:47124804-47124823 | MS.gene34251:intron | 40.0% | |
| CTAAGCCAAAGACAACAATG+TGG | + | chr8.4:47125500-47125519 | MS.gene34251:CDS | 40.0% | |
| CTGATATCTCCTTGATACCA+AGG | + | chr8.4:47125566-47125585 | MS.gene34251:CDS | 40.0% | |
| GAAAACAATGGAGCAAATGG+TGG | + | chr8.4:47125662-47125681 | MS.gene34251:intron | 40.0% | |
| GAACATATAGTGTTTGCCAG+TGG | + | chr8.4:47123260-47123279 | MS.gene34251:CDS | 40.0% | |
| GACTTCAAGAGACATAGATG+TGG | - | chr8.4:47124487-47124506 | None:intergenic | 40.0% | |
| GCATAGCCTGTGTAGATAAA+AGG | - | chr8.4:47124526-47124545 | None:intergenic | 40.0% | |
| GGTGCTCATCTTATTACAGA+TGG | + | chr8.4:47123549-47123568 | MS.gene34251:intron | 40.0% | |
| TAACAGCCTTGCTTCATACA+TGG | + | chr8.4:47123869-47123888 | MS.gene34251:intron | 40.0% | |
| TATGATGCAGTACGCAAAGT+AGG | - | chr8.4:47124317-47124336 | None:intergenic | 40.0% | |
| TGAGAGATACCTTGGTATCA+AGG | - | chr8.4:47125578-47125597 | None:intergenic | 40.0% | |
| TTAAGTTCATAACCGAGGCT+TGG | + | chr8.4:47125120-47125139 | MS.gene34251:CDS | 40.0% | |
| TTAGACATGGCAAAGTTAGC+AGG | - | chr8.4:47123090-47123109 | None:intergenic | 40.0% | |
| ! | AAAAAAGCATGCCATACCCT+GGG | - | chr8.4:47123452-47123471 | None:intergenic | 40.0% |
| ! | GTAGTTTGCAGCTTTGTGTA+CGG | + | chr8.4:47125472-47125491 | MS.gene34251:CDS | 40.0% |
| ! | TTTGAAATCGCGTCATTCAG+AGG | + | chr8.4:47125189-47125208 | MS.gene34251:intron | 40.0% |
| !! | AGAGCACCTTTTATCTACAC+AGG | + | chr8.4:47124517-47124536 | MS.gene34251:intron | 40.0% |
| !! | GTTAGCAGGCTTTGTTGAAA+CGG | - | chr8.4:47123076-47123095 | None:intergenic | 40.0% |
| ACTTAAGCTGTGACTCAGGT+TGG | - | chr8.4:47125106-47125125 | None:intergenic | 45.0% | |
| AGCAGCAGTTGAAGAAGATC+TGG | + | chr8.4:47124375-47124394 | MS.gene34251:CDS | 45.0% | |
| AGCATCAATAGCAGTGCACT+CGG | - | chr8.4:47123225-47123244 | None:intergenic | 45.0% | |
| AGTTGAAGAAGATCTGGCAG+AGG | + | chr8.4:47124381-47124400 | MS.gene34251:CDS | 45.0% | |
| CAACAATGTGGCATGGATCA+AGG | + | chr8.4:47125512-47125531 | MS.gene34251:CDS | 45.0% | |
| CATACGAGATGTTACCGCAT+AGG | + | chr8.4:47124333-47124352 | MS.gene34251:intron | 45.0% | |
| CCAAAGACAACAATGTGGCA+TGG | + | chr8.4:47125505-47125524 | MS.gene34251:CDS | 45.0% | |
| CCATGCCACATTGTTGTCTT+TGG | - | chr8.4:47125508-47125527 | None:intergenic | 45.0% | |
| GTTGAAGAAGATCTGGCAGA+GGG | + | chr8.4:47124382-47124401 | MS.gene34251:CDS | 45.0% | |
| TATCTACACAGGCTATGCCT+TGG | + | chr8.4:47124528-47124547 | MS.gene34251:intron | 45.0% | |
| TGAAGCAGCTAAACAAGAGG+GGG | + | chr8.4:47124605-47124624 | MS.gene34251:CDS | 45.0% | |
| ! | ATGTACCTTTTCCCAGGGTA+TGG | + | chr8.4:47123438-47123457 | MS.gene34251:intron | 45.0% |
| ! | ATTTTCGAAAGGGCTTCCAC+TGG | - | chr8.4:47123279-47123298 | None:intergenic | 45.0% |
| ! | CAAAAAAGCATGCCATACCC+TGG | - | chr8.4:47123453-47123472 | None:intergenic | 45.0% |
| ! | CATAACCGAGGCTTGGTTAT+AGG | + | chr8.4:47125127-47125146 | MS.gene34251:intron | 45.0% |
| ! | GGGAAAAAAGTATGGAGTGG+AGG | - | chr8.4:47124850-47124869 | None:intergenic | 45.0% |
| ! | TGCGTAAGTGATGGGAAAGT+AGG | + | chr8.4:47123393-47123412 | MS.gene34251:intron | 45.0% |
| !!! | CAGGGTATGGCATGCTTTTT+TGG | + | chr8.4:47123451-47123470 | MS.gene34251:intron | 45.0% |
| AAGACTTTGGTTGCTGCAGG+TGG | + | chr8.4:47125450-47125469 | MS.gene34251:intron | 50.0% | |
| AATCGCCAGTCCTTTCACCA+TGG | - | chr8.4:47124566-47124585 | None:intergenic | 50.0% | |
| CATGGTCAGACCATGGTGAA+AGG | + | chr8.4:47124553-47124572 | MS.gene34251:CDS | 50.0% | |
| CCTTGCTTCATACATGGCCA+AGG | + | chr8.4:47123875-47123894 | MS.gene34251:CDS | 50.0% | |
| CCTTGGCCATGTATGAAGCA+AGG | - | chr8.4:47123878-47123897 | None:intergenic | 50.0% | |
| CGAGATGTTACCGCATAGGT+TGG | + | chr8.4:47124337-47124356 | MS.gene34251:intron | 50.0% | |
| TCAGACCATGGTGAAAGGAC+TGG | + | chr8.4:47124558-47124577 | MS.gene34251:CDS | 50.0% | |
| ! | GGGCTAGCAACCAATCTGTA+AGG | + | chr8.4:47124824-47124843 | MS.gene34251:intron | 50.0% |
| ! | GTTTGCAGCTTTGTGTACGG+TGG | + | chr8.4:47125475-47125494 | MS.gene34251:CDS | 50.0% |
| AGCAGCTAAACAAGAGGGGG+TGG | + | chr8.4:47124608-47124627 | MS.gene34251:CDS | 55.0% | |
| CACAGCAGCTCCAACCTATG+CGG | - | chr8.4:47124350-47124369 | None:intergenic | 55.0% | |
| CATGGTCTGACCATGCACCA+AGG | - | chr8.4:47124548-47124567 | None:intergenic | 55.0% | |
| GAAGATCTGGCAGAGGGACA+TGG | + | chr8.4:47124388-47124407 | MS.gene34251:CDS | 55.0% | |
| GCATGCCATACCCTGGGAAA+AGG | - | chr8.4:47123446-47123465 | None:intergenic | 55.0% | |
| GGAGTGGAGGCCTTACAGAT+TGG | - | chr8.4:47124837-47124856 | None:intergenic | 55.0% | |
| GGGTTGGGAACACTTCTGTC+AGG | + | chr8.4:47123528-47123547 | MS.gene34251:intron | 55.0% | |
| TGTTGCAGGCAGCTGCTGAA+TGG | + | chr8.4:47123574-47123593 | MS.gene34251:CDS | 55.0% | |
| ! | ACAGGCTATGCCTTGGTGCA+TGG | + | chr8.4:47124535-47124554 | MS.gene34251:intron | 55.0% |
| ! | CTTGGTGCATGGTCAGACCA+TGG | + | chr8.4:47124546-47124565 | MS.gene34251:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 47123063 | 47125717 | 47123063 | ID=MS.gene34251 |
| chr8.4 | mRNA | 47123063 | 47125717 | 47123063 | ID=MS.gene34251.t1;Parent=MS.gene34251 |
| chr8.4 | exon | 47123063 | 47123123 | 47123063 | ID=MS.gene34251.t1.exon1;Parent=MS.gene34251.t1 |
| chr8.4 | CDS | 47123063 | 47123123 | 47123063 | ID=cds.MS.gene34251.t1;Parent=MS.gene34251.t1 |
| chr8.4 | exon | 47123222 | 47123308 | 47123222 | ID=MS.gene34251.t1.exon2;Parent=MS.gene34251.t1 |
| chr8.4 | CDS | 47123222 | 47123308 | 47123222 | ID=cds.MS.gene34251.t1;Parent=MS.gene34251.t1 |
| chr8.4 | exon | 47123550 | 47123595 | 47123550 | ID=MS.gene34251.t1.exon3;Parent=MS.gene34251.t1 |
| chr8.4 | CDS | 47123550 | 47123595 | 47123550 | ID=cds.MS.gene34251.t1;Parent=MS.gene34251.t1 |
| chr8.4 | exon | 47123875 | 47123937 | 47123875 | ID=MS.gene34251.t1.exon4;Parent=MS.gene34251.t1 |
| chr8.4 | CDS | 47123875 | 47123937 | 47123875 | ID=cds.MS.gene34251.t1;Parent=MS.gene34251.t1 |
| chr8.4 | exon | 47124355 | 47124447 | 47124355 | ID=MS.gene34251.t1.exon5;Parent=MS.gene34251.t1 |
| chr8.4 | CDS | 47124355 | 47124447 | 47124355 | ID=cds.MS.gene34251.t1;Parent=MS.gene34251.t1 |
| chr8.4 | exon | 47124539 | 47124629 | 47124539 | ID=MS.gene34251.t1.exon6;Parent=MS.gene34251.t1 |
| chr8.4 | CDS | 47124539 | 47124629 | 47124539 | ID=cds.MS.gene34251.t1;Parent=MS.gene34251.t1 |
| chr8.4 | exon | 47125077 | 47125141 | 47125077 | ID=MS.gene34251.t1.exon7;Parent=MS.gene34251.t1 |
| chr8.4 | CDS | 47125077 | 47125141 | 47125077 | ID=cds.MS.gene34251.t1;Parent=MS.gene34251.t1 |
| chr8.4 | exon | 47125278 | 47125377 | 47125278 | ID=MS.gene34251.t1.exon8;Parent=MS.gene34251.t1 |
| chr8.4 | CDS | 47125278 | 47125377 | 47125278 | ID=cds.MS.gene34251.t1;Parent=MS.gene34251.t1 |
| chr8.4 | exon | 47125469 | 47125587 | 47125469 | ID=MS.gene34251.t1.exon9;Parent=MS.gene34251.t1 |
| chr8.4 | CDS | 47125469 | 47125587 | 47125469 | ID=cds.MS.gene34251.t1;Parent=MS.gene34251.t1 |
| chr8.4 | exon | 47125663 | 47125717 | 47125663 | ID=MS.gene34251.t1.exon10;Parent=MS.gene34251.t1 |
| chr8.4 | CDS | 47125663 | 47125717 | 47125663 | ID=cds.MS.gene34251.t1;Parent=MS.gene34251.t1 |
| Gene Sequence |
| Protein sequence |
