AlfalfaGEDB | MS.gene34437

M. sativa cultivar XinJiangDaYe / MS.gene34437

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0019842 GO:0030246 GO:0031406 GO:0031418 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0046872 GO:0046914 GO:0048029 GO:0048037 GO:0050662 GO:0055114
PFAM: PF13640.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34437.t1	XP_003592342.3	99.1	231	2	0	1	231	54	284	5.60E-128	466.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34437.t1	I3SR39	99.1	231	2	0	1	231	54	284	4.1e-128	466.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049230	MS.gene34437	0.811649	6.30E-51	-1.69E-46
MS.gene049378	MS.gene34437	0.805032	1.62E-49	-1.69E-46
MS.gene050226	MS.gene34437	0.819425	1.17E-52	-1.69E-46
MS.gene050227	MS.gene34437	0.823243	1.54E-53	-1.69E-46
MS.gene050228	MS.gene34437	0.822601	2.17E-53	-1.69E-46
MS.gene050303	MS.gene34437	0.813676	2.27E-51	-1.69E-46
MS.gene050623	MS.gene34437	-0.841371	4.95E-58	-1.69E-46
MS.gene050642	MS.gene34437	0.859769	3.29E-63	-1.69E-46
MS.gene051257	MS.gene34437	0.800596	1.34E-48	-1.69E-46
MS.gene051535	MS.gene34437	0.817757	2.79E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34437.t1	MTR_1g101840	97.143	140	4	0	92	231	14	153	3.02e-96	278

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34437.t1	AT5G51880	67.965	231	70	2	1	231	24	250	1.27e-106	308

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Find 45 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACAACCGACCCAAAA+TGG	0.337133	1.2:-75987957	MS.gene34437:CDS
AACCTATATAATCTAATATT+TGG	0.132507	1.2:+75987559	None:intergenic
AAGAAATAGCATTGTGGCTG+AGG	0.471528	1.2:-75985855	MS.gene34437:intron
AAGAGTGCCATCCCTTCAAT+GGG	0.530149	1.2:+75985718	None:intergenic
ACCTGGTGAAGTTAAATCCA+AGG	0.588470	1.2:-75985954	MS.gene34437:CDS
ACGAGATTTCGATCTCTTCA+CGG	0.469965	1.2:-75987893	MS.gene34437:intron
ACTTTGCTAGTTTATTTGAG+TGG	0.558771	1.2:-75985980	MS.gene34437:CDS
AGATGAATCTGTAGGTTTGC+TGG	0.376051	1.2:+75985919	None:intergenic
ATCCAAATATTAGATTATAT+AGG	0.468123	1.2:-75987561	MS.gene34437:intron
ATCGATGAGAGTAATGATCT+TGG	0.448560	1.2:-75986025	MS.gene34437:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGCATGACAATTAGTGA+AGG	+	chr1.2:75987509-75987528	None:intergenic	30.0%
ATGAAAAGAAATTCTGAACC+TGG	+	chr1.2:75985809-75985828	None:intergenic	30.0%
CATGAAGACATAAGATTTCT+TGG	+	chr1.2:75986678-75986697	None:intergenic	30.0%
CTAAGTTGTTTATGCAAACA+AGG	-	chr1.2:75987361-75987380	MS.gene34437:intron	30.0%
TAAGCTATTTATCCAAACAG+GGG	-	chr1.2:75987338-75987357	MS.gene34437:intron	30.0%
TGGGAAAAGAAAAAGAAGAA+GGG	+	chr1.2:75985749-75985768	None:intergenic	30.0%
TTGGGAAAAGAAAAAGAAGA+AGG	+	chr1.2:75985750-75985769	None:intergenic	30.0%
TTTACTCATCAAGGAAGTTT+AGG	-	chr1.2:75985873-75985892	MS.gene34437:CDS	30.0%
ATCGATGAGAGTAATGATCT+TGG	-	chr1.2:75987572-75987591	MS.gene34437:CDS	35.0%
ATGTCACTATTTGCTTGCTT+TGG	-	chr1.2:75987824-75987843	MS.gene34437:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	75985624	75987995	75985624	ID=MS.gene34437
chr1.2	mRNA	75985624	75987995	75985624	ID=MS.gene34437.t1;Parent=MS.gene34437
chr1.2	exon	75987894	75987995	75987894	ID=MS.gene34437.t1.exon1;Parent=MS.gene34437.t1
chr1.2	CDS	75987894	75987995	75987894	ID=cds.MS.gene34437.t1;Parent=MS.gene34437.t1
chr1.2	exon	75987562	75987809	75987562	ID=MS.gene34437.t1.exon2;Parent=MS.gene34437.t1
chr1.2	CDS	75987562	75987809	75987562	ID=cds.MS.gene34437.t1;Parent=MS.gene34437.t1
chr1.2	exon	75985856	75986078	75985856	ID=MS.gene34437.t1.exon3;Parent=MS.gene34437.t1
chr1.2	CDS	75985856	75986078	75985856	ID=cds.MS.gene34437.t1;Parent=MS.gene34437.t1
chr1.2	exon	75985624	75985746	75985624	ID=MS.gene34437.t1.exon4;Parent=MS.gene34437.t1
chr1.2	CDS	75985624	75985746	75985624	ID=cds.MS.gene34437.t1;Parent=MS.gene34437.t1

Gene Sequence

>MS.gene34437

ATGGGAGAGAGAAAAGAAACAACAACCGACCCAAAATGGCCTTCCATCAAACCCAAAAACAATCTTCACATCACTCGCTTACGAGATTTCGATCTCTTCACGGTTACTTACTATTCATTCAACCCTTCTTCTTTTTCTTTTCCCAATTTTATCTGTGAATTATTCTTATTTTGATGATTTTTCCAGGTTCAGAATTTCTTTTCATCTTATGAATCAAAGGCATTCATTGAAACTGCTGAGGGAATTGGTTTTACTCATCAAGGAAGTTTAGGTCCAGCGAAAGGTGAAGCTTATAGAGATAATGATCGAATTTCGGTGAATGATCCTGTTCTTGCTGATTCTATTTGGGATTCTGGACTTAACAAGCTTTTTTCTGATATAAGAATTCGAGGGAAAGCTGCTGTAGGTTTGAATCCAAATATTAGATTATATAGGTTAGTTTTTTTGTTGCTCTATCTCTCTGATACAATAGATTCTTGTATAGTTGTATAAAAGATTTTGTAGGATTTTAATGACTTTCATGATTTTAAAAGACAATCAGGATTTTCAATTTGGATTTCAATGGATTTACATCATAAGATTTTAAAGGATTTTATGGATTTATAAGATTTCAAAAGATTTTATGAATTTTAAGGACTCATTGAAAAGAAATGATTACAACACACTCTCTATCACAATATTTTGAATACATACTCTTATTTTTTATTTTATTTTTATGAGAGATAGAGAGGGGGAAGAGAGGAGGGAGAGAAGGGAGAAAAGAGAGGAGATAGAGGGAGATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAGAAGAGAGAGAGAGAGAAGGGAGAGAGAGGGGAGAAAAGAGAGGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGGAGAAGAGAGAGAGAGACGAAGAGAGAAGGGAGAGAGAGAGAGGAGGGAGAAAAGAGAGGAGAGAGGGATAAGAAAGAGATAGTAAAAACTTTTAAAGAAAAACAATCCCAAGAAATCTTATGTCTTCATGAAAGACTTTTTTTTGTTAAAATTTCACTAGACAATCTCACAAAATCCATCAAAATCTAATTTATTAAACAATCCTTTGAAATTTGAATGATTTTGAATACCATGAGACTTTTTTTAAGTGATGAAAAGTCTTGATTGAATACCTCAAGACTTTTTTAAAATGACAAAGAATCTTGATTGAATACCACAAGACTTTTTTTAAATTGCAAAGAGTCTTGATTGAATACCACAGACTTTTTCATAATTAAAAAGTCTTTTAAAATCCCTTAAAATCCCTTATAGTTTGATTGAGAATAATTTGACTTTACTTAATCTTTTGTTATAGAAATAGCTTATGTGTAAGCACTTATATGATAAGTGTTTTTGCTATAAATGTTTAGTTAAGGGTCTGTTTGGATTGACTTGTTTGGGTTTATCTACCGGTAGAAATTTTCCGAGACTGTTTAGGAGAACATATGAAAACAGTGTATAACATTATTCATAAGCTGTTTTCAGCTTATTTTCATAAACTCTCCAAGATAGCTTATGAAAACAGCTTGTAGCTTATACAAAAATATTTGAAGTCTATTTTATCCTTTGCTATATAAATAGCTTATACATAAGGGCTTATCATGATAAGTGCTTGTGCTATAAGCTACAAATAAGCTATTTATCCAAACAGGGGCTAAGTTGTTTATGCAAACAAGGTCTAAGTTTTCAGAATTCTATAGCTTTTCTTGAAACATTGCATATTCATTTATGCTGTCTTCTTAATCAATTGAAAACACATGATATCTTTAAATTTGGTTTTATCAGAAAAAATTATATCACCTTCACTAATTGTCATGCATTTTTTGTATTTCAGGTACAAAGTTGGTCAACGGTTTGGACGACATATCGATGAGAGTAATGATCTTGGAGATGGAAAAAGAACTCGTTATACTTTGCTAGTTTATTTGAGTGGCGGACCTGGTGAAGTTAAATCCAAGGCTAAAAATGATTCCAGCAAACCTACAGATTCATCTTCTGATCGTTTAGTTGGAGGAGAAACAGTCTTCTATGGTTCAAGAAATAGCATTGTGGCTGAGGTAGATTTTAATTTTATTTTAGTGAAATATCAGTTGATGTTGCTTAATGCAAGTTTTGGGATGTCACTATTTGCTTGCTTTGGGTGTTGATACAATTTTGATTTTACAGGTTGCTCCCATTGAAGGGATGGCACTCTTGCACATTCATGGAGATAAATGCTTGTTACATGAAGCCAGAAATGTTACCAAAGGTGTAAAATATGTCTTTCGTTCGGATGTTGTATTTGCTTGA

Protein sequence

>MS.gene34437.t1

MGERKETTTDPKWPSIKPKNNLHITRLRDFDLFTVQNFFSSYESKAFIETAEGIGFTHQGSLGPAKGEAYRDNDRISVNDPVLADSIWDSGLNKLFSDIRIRGKAAVGLNPNIRLYRYKVGQRFGRHIDESNDLGDGKRTRYTLLVYLSGGPGEVKSKAKNDSSKPTDSSSDRLVGGETVFYGSRNSIVAEVAPIEGMALLHIHGDKCLLHEARNVTKGVKYVFRSDVVFA