Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35118.t1 | XP_013457308.1 | 99.8 | 444 | 1 | 0 | 1 | 444 | 1 | 444 | 6.30E-261 | 909.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35118.t1 | Q6VAF7 | 97.2 | 432 | 12 | 0 | 1 | 432 | 1 | 432 | 5.4e-253 | 874.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35118.t1 | A0A072UNG6 | 99.8 | 444 | 1 | 0 | 1 | 444 | 1 | 444 | 4.6e-261 | 909.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35118 | MS.gene42253 | PPI |
| MS.gene35118 | MS.gene050630 | PPI |
| MS.gene35118 | MS.gene22813 | PPI |
| MS.gene35118 | MS.gene49099 | PPI |
| MS.gene35118 | MS.gene013972 | PPI |
| MS.gene35118 | MS.gene34503 | PPI |
| MS.gene064762 | MS.gene35118 | PPI |
| MS.gene35118 | MS.gene028342 | PPI |
| MS.gene35118 | MS.gene69396 | PPI |
| MS.gene35118 | MS.gene58838 | PPI |
| MS.gene35118 | MS.gene014419 | PPI |
| MS.gene35118 | MS.gene025926 | PPI |
| MS.gene35118 | MS.gene34573 | PPI |
| MS.gene35118 | MS.gene017695 | PPI |
| MS.gene35118 | MS.gene36449 | PPI |
| MS.gene35118 | MS.gene024462 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35118.t1 | MTR_4g094535 | 99.775 | 444 | 1 | 0 | 1 | 444 | 1 | 444 | 0.0 | 933 |
| MS.gene35118.t1 | MTR_2g031310 | 97.072 | 444 | 13 | 0 | 1 | 444 | 1 | 444 | 0.0 | 913 |
| MS.gene35118.t1 | MTR_1g101130 | 94.884 | 430 | 22 | 0 | 1 | 430 | 1 | 430 | 0.0 | 842 |
| MS.gene35118.t1 | MTR_4g017630 | 94.884 | 430 | 22 | 0 | 1 | 430 | 1 | 430 | 0.0 | 840 |
| MS.gene35118.t1 | MTR_4g019110 | 94.651 | 430 | 23 | 0 | 1 | 430 | 1 | 430 | 0.0 | 840 |
| MS.gene35118.t1 | MTR_7g089120 | 94.186 | 430 | 25 | 0 | 1 | 430 | 1 | 430 | 0.0 | 837 |
| MS.gene35118.t1 | MTR_4g019090 | 94.419 | 430 | 24 | 0 | 1 | 430 | 1 | 430 | 0.0 | 837 |
| MS.gene35118.t1 | MTR_3g113970 | 94.213 | 432 | 23 | 1 | 1 | 430 | 1 | 432 | 0.0 | 834 |
| MS.gene35118.t1 | MTR_8g098360 | 91.395 | 430 | 37 | 0 | 1 | 430 | 1 | 430 | 0.0 | 818 |
| MS.gene35118.t1 | MTR_8g107250 | 89.842 | 443 | 42 | 2 | 1 | 440 | 1 | 443 | 0.0 | 816 |
| MS.gene35118.t1 | MTR_8g085980 | 41.935 | 434 | 242 | 2 | 1 | 424 | 1 | 434 | 7.88e-126 | 372 |
| MS.gene35118.t1 | MTR_3g110720 | 41.935 | 434 | 242 | 2 | 1 | 424 | 1 | 434 | 1.54e-124 | 369 |
| MS.gene35118.t1 | MTR_4g097830 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 3.26e-124 | 368 |
| MS.gene35118.t1 | MTR_1g106005 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 5.91e-123 | 365 |
| MS.gene35118.t1 | MTR_7g085800 | 41.014 | 434 | 246 | 3 | 1 | 424 | 1 | 434 | 2.55e-122 | 363 |
| MS.gene35118.t1 | MTR_6g029190 | 40.541 | 444 | 253 | 2 | 1 | 433 | 1 | 444 | 2.66e-121 | 361 |
| MS.gene35118.t1 | MTR_2g041670 | 37.556 | 450 | 268 | 5 | 1 | 441 | 1 | 446 | 1.32e-99 | 306 |
| MS.gene35118.t1 | MTR_7g117050 | 34.932 | 438 | 268 | 7 | 2 | 423 | 3 | 439 | 2.95e-95 | 295 |
| MS.gene35118.t1 | MTR_2g041400 | 37.471 | 427 | 254 | 5 | 1 | 418 | 1 | 423 | 9.30e-95 | 292 |
| MS.gene35118.t1 | MTR_3g063410 | 33.784 | 148 | 90 | 1 | 256 | 395 | 30 | 177 | 2.61e-28 | 110 |
| MS.gene35118.t1 | MTR_3g063410 | 31.852 | 135 | 84 | 1 | 269 | 395 | 4 | 138 | 3.82e-21 | 90.1 |
| MS.gene35118.t1 | MTR_4g093670 | 82.759 | 29 | 5 | 0 | 377 | 405 | 1 | 29 | 8.35e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35118.t1 | AT5G23860 | 95.116 | 430 | 21 | 0 | 1 | 430 | 1 | 430 | 0.0 | 844 |
| MS.gene35118.t1 | AT5G23860 | 95.116 | 430 | 21 | 0 | 1 | 430 | 1 | 430 | 0.0 | 844 |
| MS.gene35118.t1 | AT5G62700 | 95.116 | 430 | 21 | 0 | 1 | 430 | 1 | 430 | 0.0 | 842 |
| MS.gene35118.t1 | AT5G62690 | 95.116 | 430 | 21 | 0 | 1 | 430 | 1 | 430 | 0.0 | 842 |
| MS.gene35118.t1 | AT5G44340 | 95.581 | 430 | 19 | 0 | 1 | 430 | 1 | 430 | 0.0 | 841 |
| MS.gene35118.t1 | AT2G29550 | 94.664 | 431 | 23 | 0 | 1 | 431 | 1 | 431 | 0.0 | 841 |
| MS.gene35118.t1 | AT1G75780 | 94.432 | 431 | 23 | 1 | 1 | 430 | 1 | 431 | 0.0 | 840 |
| MS.gene35118.t1 | AT1G20010 | 94.432 | 431 | 23 | 1 | 1 | 430 | 1 | 431 | 0.0 | 840 |
| MS.gene35118.t1 | AT4G20890 | 95.581 | 430 | 19 | 0 | 1 | 430 | 1 | 430 | 0.0 | 839 |
| MS.gene35118.t1 | AT5G12250 | 94.186 | 430 | 25 | 0 | 1 | 430 | 1 | 430 | 0.0 | 838 |
| MS.gene35118.t1 | AT5G19780 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 6.15e-125 | 370 |
| MS.gene35118.t1 | AT5G19770 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 6.15e-125 | 370 |
| MS.gene35118.t1 | AT1G64740 | 41.014 | 434 | 246 | 2 | 1 | 424 | 1 | 434 | 5.94e-124 | 368 |
| MS.gene35118.t1 | AT4G14960 | 42.009 | 438 | 241 | 3 | 1 | 428 | 1 | 435 | 1.85e-122 | 364 |
| MS.gene35118.t1 | AT1G04820 | 41.781 | 438 | 242 | 3 | 1 | 428 | 1 | 435 | 1.18e-121 | 362 |
| MS.gene35118.t1 | AT1G50010 | 41.781 | 438 | 242 | 3 | 1 | 428 | 1 | 435 | 1.18e-121 | 362 |
| MS.gene35118.t1 | AT4G14960 | 41.969 | 386 | 214 | 2 | 1 | 376 | 1 | 386 | 3.64e-104 | 316 |
| MS.gene35118.t1 | AT5G05620 | 34.703 | 438 | 269 | 7 | 2 | 423 | 3 | 439 | 2.57e-94 | 292 |
| MS.gene35118.t1 | AT3G61650 | 34.703 | 438 | 269 | 7 | 2 | 423 | 3 | 439 | 4.60e-94 | 292 |
Find 135 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCGTCTCCATTTCTTTA+TGG | 0.057272 | 4.4:+19797687 | MS.gene35118:CDS |
| GCAGATAACTTCCCAGAATT+TGG | 0.219215 | 4.4:-19795924 | None:intergenic |
| ACCTTTCGCCCAATTATTTC+CGG | 0.230782 | 4.4:-19796161 | None:intergenic |
| AGTCCGGTGCCGGAAATAAT+TGG | 0.234022 | 4.4:+19796152 | MS.gene35118:CDS |
| ACCAGATCGGAGCCAAATTC+TGG | 0.240214 | 4.4:+19795912 | MS.gene35118:CDS |
| TTGGGAGGTGGAACTGGTTC+TGG | 0.253925 | 4.4:+19796613 | MS.gene35118:CDS |
| CGTTCCACGCGCCGTGCTTA+TGG | 0.259332 | 4.4:+19796048 | MS.gene35118:CDS |
| CGCTTCTTATATCGAAGATT+AGG | 0.302722 | 4.4:+19796644 | MS.gene35118:CDS |
| CGCTTCGTTCCGGTCCGTTT+GGG | 0.303881 | 4.4:+19796095 | MS.gene35118:CDS |
| TCGCTTCGTTCCGGTCCGTT+TGG | 0.343575 | 4.4:+19796094 | MS.gene35118:CDS |
| GTCTCCATTTCTTTATGGTT+GGG | 0.343623 | 4.4:+19797692 | MS.gene35118:CDS |
| CATCCATTCAAGAGATGTTC+AGG | 0.347098 | 4.4:+19798022 | MS.gene35118:CDS |
| TGCTGATGAATGCATGGTTT+TGG | 0.356158 | 4.4:+19796783 | MS.gene35118:CDS |
| ATTTCAAGTGTGTCATTCAT+TGG | 0.357158 | 4.4:+19796594 | MS.gene35118:CDS |
| CGTCTCCATTTCTTTATGGT+TGG | 0.360293 | 4.4:+19797691 | MS.gene35118:CDS |
| CACATCTGCTGAGTCAATTC+AGG | 0.373294 | 4.4:-19797766 | None:intergenic |
| CAGTAGCATCCTGGTATTGC+TGG | 0.374586 | 4.4:-19798173 | None:intergenic |
| GCTTCTTATATCGAAGATTA+GGG | 0.388998 | 4.4:+19796645 | MS.gene35118:CDS |
| ACTTGTTGTCTACGTTTCCC+TGG | 0.394853 | 4.4:+19797616 | MS.gene35118:CDS |
| CATTCATTGGGAGGTGGAAC+TGG | 0.395787 | 4.4:+19796607 | MS.gene35118:CDS |
| ACGCTAGACTTGACGTTGTT+GGG | 0.397421 | 4.4:-19797943 | None:intergenic |
| ACCATGGATTCGCTTCGTTC+CGG | 0.398843 | 4.4:+19796085 | MS.gene35118:CDS |
| CGCATTGCCCGCCTTGGATG+TGG | 0.406173 | 4.4:-19795886 | None:intergenic |
| ATCAATCAACTCAGCGCCTT+CGG | 0.406415 | 4.4:-19796191 | None:intergenic |
| CCCAGAATTTGGCTCCGATC+TGG | 0.417231 | 4.4:-19795913 | None:intergenic |
| GGTGGAACTGGTTCTGGAAT+GGG | 0.420584 | 4.4:+19796619 | MS.gene35118:CDS |
| GAAGATTAGGGAAGAGTATC+CGG | 0.429040 | 4.4:+19796657 | MS.gene35118:CDS |
| TTCTGTGTTTCCTTCACCTA+AGG | 0.432433 | 4.4:+19796699 | MS.gene35118:CDS |
| AAGTTGGCATCCACTTTCAT+TGG | 0.434327 | 4.4:+19797991 | MS.gene35118:CDS |
| CACGCTAGACTTGACGTTGT+TGG | 0.439244 | 4.4:-19797944 | None:intergenic |
| TTTCAAGTGTGTCATTCATT+GGG | 0.439707 | 4.4:+19796595 | MS.gene35118:CDS |
| TAGCAGAAATGAGGTGGTTA+AGG | 0.446319 | 4.4:-19797579 | None:intergenic |
| AGATCAGAGTTCAGCTGCCC+AGG | 0.446604 | 4.4:-19797634 | None:intergenic |
| GGCGCAAGGCTTTCTTGCAT+TGG | 0.449590 | 4.4:+19798076 | MS.gene35118:CDS |
| GGAGACGAGGGAATGGGATA+AGG | 0.450931 | 4.4:-19797675 | None:intergenic |
| TGAGTTGATTGATTCCGTTT+TGG | 0.451285 | 4.4:+19796201 | MS.gene35118:CDS |
| GTCCGGTGCCGGAAATAATT+GGG | 0.454869 | 4.4:+19796153 | MS.gene35118:CDS |
| CAAACCCAACCATAAAGAAA+TGG | 0.456807 | 4.4:-19797696 | None:intergenic |
| GGTTACCGCATTGCCCGCCT+TGG | 0.462995 | 4.4:-19795892 | None:intergenic |
| GAGTAACATGAATGATTTAG+TGG | 0.471366 | 4.4:+19798143 | MS.gene35118:CDS |
| CGCCCAATTATTTCCGGCAC+CGG | 0.472241 | 4.4:-19796155 | None:intergenic |
| CCAGATCGGAGCCAAATTCT+GGG | 0.474009 | 4.4:+19795913 | MS.gene35118:CDS |
| CTGGGATCCTCTTGATGTCA+AGG | 0.475658 | 4.4:-19797722 | None:intergenic |
| TCTCCTGAACATCTCTTGAA+TGG | 0.476561 | 4.4:-19798025 | None:intergenic |
| TGCTGATGAGGAAGAGTATG+AGG | 0.478765 | 4.4:+19798194 | MS.gene35118:CDS |
| GATGCCAACTTAAGTCCCTT+TGG | 0.482604 | 4.4:-19797979 | None:intergenic |
| CATCTGCTCGTCCACCTCCT+TGG | 0.482638 | 4.4:-19797875 | None:intergenic |
| GTGCTTATGGATCTTGAACC+TGG | 0.487563 | 4.4:+19796061 | MS.gene35118:CDS |
| CACAGCTATGTTTAGGCGCA+AGG | 0.489129 | 4.4:+19798062 | MS.gene35118:CDS |
| CTTGTTGTCTACGTTTCCCT+GGG | 0.489205 | 4.4:+19797617 | MS.gene35118:CDS |
| CAGACAAGTTACGGTACTGC+TGG | 0.489207 | 4.4:-19797741 | None:intergenic |
| TGGTGAGGGAATGGATGAAA+TGG | 0.491207 | 4.4:+19798104 | MS.gene35118:CDS |
| AGAAATGGAGACGAGGGAAT+GGG | 0.491250 | 4.4:-19797681 | None:intergenic |
| GCTTTCTTGCATTGGTACAC+TGG | 0.499379 | 4.4:+19798084 | MS.gene35118:CDS |
| ACAGAAAGCGTTGCATTGTA+AGG | 0.500877 | 4.4:-19796742 | None:intergenic |
| AAGAAATGGAGACGAGGGAA+TGG | 0.501107 | 4.4:-19797682 | None:intergenic |
| GAGGAGGACGAAGAGGAGAT+TGG | 0.504946 | 4.4:+19798213 | MS.gene35118:CDS |
| AGCAGTTCACAGCTATGTTT+AGG | 0.505444 | 4.4:+19798055 | MS.gene35118:CDS |
| AGGTGGAACTGGTTCTGGAA+TGG | 0.505865 | 4.4:+19796618 | MS.gene35118:CDS |
| ACCACCAAAGGGACTTAAGT+TGG | 0.517790 | 4.4:+19797975 | MS.gene35118:CDS |
| TGACCGAAAACGAAGTTATC+CGG | 0.518707 | 4.4:-19796130 | None:intergenic |
| CCTCATCAGCAGTAGCATCC+TGG | 0.518800 | 4.4:-19798182 | None:intergenic |
| GGTCGAAAGATCTGCCCAAA+CGG | 0.522770 | 4.4:-19796109 | None:intergenic |
| AATGTCTATTACAATGAAGC+TGG | 0.524418 | 4.4:+19796013 | MS.gene35118:CDS |
| GGATCTTGAACCTGGAACCA+TGG | 0.525143 | 4.4:+19796069 | MS.gene35118:CDS |
| ACTCTTCATACTTTGTTGAG+TGG | 0.525271 | 4.4:+19797917 | MS.gene35118:CDS |
| TTGCATTGGTACACTGGTGA+GGG | 0.526145 | 4.4:+19798090 | MS.gene35118:CDS |
| CTCATTTCTGCTACCATGAG+TGG | 0.528073 | 4.4:+19797589 | MS.gene35118:CDS |
| ATTCAGGCACAGACAAGTTA+CGG | 0.528087 | 4.4:-19797750 | None:intergenic |
| GTCAAATAACGACCGTGGCG+TGG | 0.528804 | 4.4:-19797820 | None:intergenic |
| ACAACTGTATCAGACACCTT+AGG | 0.530444 | 4.4:-19796715 | None:intergenic |
| TTGGTACACTGGTGAGGGAA+TGG | 0.531429 | 4.4:+19798095 | MS.gene35118:CDS |
| AGAGTATGAGGAGGACGAAG+AGG | 0.534706 | 4.4:+19798206 | MS.gene35118:CDS |
| GTATTGTCCGGTGGAATCGA+TGG | 0.537569 | 4.4:-19795957 | None:intergenic |
| TTTCCTCACAACATCCAAAA+CGG | 0.540847 | 4.4:-19796215 | None:intergenic |
| GAGAATTGTGATTGCTTGCA+AGG | 0.543252 | 4.4:+19796244 | MS.gene35118:CDS |
| GGCAGAGTACCAGCAATACC+AGG | 0.544880 | 4.4:+19798164 | MS.gene35118:CDS |
| CTGAATTGACTCAGCAGATG+TGG | 0.548224 | 4.4:+19797767 | MS.gene35118:CDS |
| GTGTGGCAAGCTTCAATGTA+CGG | 0.548302 | 4.4:-19796834 | None:intergenic |
| CGAAGCGAATCCATGGTTCC+AGG | 0.551322 | 4.4:-19796079 | None:intergenic |
| TGGGATCCTCTTGATGTCAA+GGG | 0.552806 | 4.4:-19797721 | None:intergenic |
| AACGTCAACATCATACGATC+CGG | 0.553866 | 4.4:-19796676 | None:intergenic |
| CTTGCATTGGTACACTGGTG+AGG | 0.554328 | 4.4:+19798089 | MS.gene35118:CDS |
| CCAGGATGCTACTGCTGATG+AGG | 0.555022 | 4.4:+19798182 | MS.gene35118:CDS |
| AAATCCTCCACATCCAAGGC+GGG | 0.555066 | 4.4:+19795879 | MS.gene35118:CDS |
| CAAGTGTGTCATTCATTGGG+AGG | 0.556985 | 4.4:+19796598 | MS.gene35118:CDS |
| TAAGATGAGCACCAAGGAGG+TGG | 0.560512 | 4.4:+19797864 | MS.gene35118:CDS |
| TATTACAATGAAGCTGGTGG+TGG | 0.563542 | 4.4:+19796019 | MS.gene35118:CDS |
| TGTTGAATTGCCAATGAAAG+TGG | 0.564438 | 4.4:-19798001 | None:intergenic |
| AAAGATCTGCCCAAACGGAC+CGG | 0.568671 | 4.4:-19796104 | None:intergenic |
| GTGTGTGATATACCACCAAA+GGG | 0.569448 | 4.4:+19797964 | MS.gene35118:CDS |
| GATACGTTCAAGCTGAAGAT+CGG | 0.570363 | 4.4:-19795990 | None:intergenic |
| GGAATCGCCATTGTATTGTC+CGG | 0.571660 | 4.4:-19795969 | None:intergenic |
| GCCAACTTAAGTCCCTTTGG+TGG | 0.573973 | 4.4:-19797976 | None:intergenic |
| ACCGGAACGAAGCGAATCCA+TGG | 0.578389 | 4.4:-19796086 | None:intergenic |
| TTTGGATGTTGTGAGGAAAG+AGG | 0.581804 | 4.4:+19796219 | MS.gene35118:CDS |
| CACTCATGGTAGCAGAAATG+AGG | 0.582821 | 4.4:-19797588 | None:intergenic |
| GTGTGTCATTCATTGGGAGG+TGG | 0.583553 | 4.4:+19796601 | MS.gene35118:CDS |
| GCCGGAAATAATTGGGCGAA+AGG | 0.584081 | 4.4:+19796160 | MS.gene35118:CDS |
| GGGCAATGCGGTAACCAGAT+CGG | 0.585645 | 4.4:+19795899 | MS.gene35118:CDS |
| ATTGCCCGCCTTGGATGTGG+AGG | 0.585862 | 4.4:-19795883 | None:intergenic |
| TGAAAATGCTGATGAATGCA+TGG | 0.590764 | 4.4:+19796777 | MS.gene35118:CDS |
| TTTGCACCCTTGACATCAAG+AGG | 0.593193 | 4.4:+19797715 | MS.gene35118:CDS |
| AGAGAAATCCTCCACATCCA+AGG | 0.593831 | 4.4:+19795875 | MS.gene35118:CDS |
| AGATCCATAAGCACGGCGCG+TGG | 0.594405 | 4.4:-19796052 | None:intergenic |
| ACAACAAGTAACTCCACTCA+TGG | 0.597206 | 4.4:-19797602 | None:intergenic |
| CGTGTGTGATATACCACCAA+AGG | 0.597625 | 4.4:+19797963 | MS.gene35118:CDS |
| ACAATGAAGCTGGTGGTGGA+AGG | 0.601429 | 4.4:+19796023 | MS.gene35118:CDS |
| GTATCAGACACCTTAGGTGA+AGG | 0.604768 | 4.4:-19796709 | None:intergenic |
| GATCAGAGTTCAGCTGCCCA+GGG | 0.605765 | 4.4:-19797633 | None:intergenic |
| GATTCCACCGGACAATACAA+TGG | 0.609785 | 4.4:+19795962 | MS.gene35118:CDS |
| GTTTGGGCAGATCTTTCGAC+CGG | 0.610286 | 4.4:+19796111 | MS.gene35118:CDS |
| CCATAAAGAAATGGAGACGA+GGG | 0.610559 | 4.4:-19797687 | None:intergenic |
| AGACAAGTTACGGTACTGCT+GGG | 0.611318 | 4.4:-19797740 | None:intergenic |
| CACATCCAAGGCGGGCAATG+CGG | 0.623370 | 4.4:+19795887 | MS.gene35118:CDS |
| TAAGGTGTCTGATACAGTTG+TGG | 0.624348 | 4.4:+19796717 | MS.gene35118:CDS |
| ATCGCCATTGTATTGTCCGG+TGG | 0.632031 | 4.4:-19795966 | None:intergenic |
| ACTGCTTCAGCAATGTTCCG+TGG | 0.632259 | 4.4:+19797841 | MS.gene35118:CDS |
| GCGAAAGGTCATTACACCGA+AGG | 0.636978 | 4.4:+19796175 | MS.gene35118:CDS |
| GAACACGCCATCGATTCCAC+CGG | 0.641355 | 4.4:+19795950 | MS.gene35118:CDS |
| GAAGAGGAGATTGGTGCTTG+AGG | 0.646494 | 4.4:+19798222 | MS.gene35118:CDS |
| GAGAAACCTACAAGTTGGTG+TGG | 0.655099 | 4.4:-19796851 | None:intergenic |
| TGCGCTGCAGATCCACGCCA+CGG | 0.655282 | 4.4:+19797808 | MS.gene35118:CDS |
| ACCATAAAGAAATGGAGACG+AGG | 0.658939 | 4.4:-19797688 | None:intergenic |
| TCATGGTAGCAGAAATGAGG+TGG | 0.661184 | 4.4:-19797585 | None:intergenic |
| TGAATTGACTCAGCAGATGT+GGG | 0.666761 | 4.4:+19797768 | MS.gene35118:CDS |
| AGGTTCAAGATCCATAAGCA+CGG | 0.668081 | 4.4:-19796059 | None:intergenic |
| CCTTGGTGCTCATCTTACCA+CGG | 0.683046 | 4.4:-19797858 | None:intergenic |
| TGATGAGGAAGAGTATGAGG+AGG | 0.687688 | 4.4:+19798197 | MS.gene35118:CDS |
| GAAATCCTCCACATCCAAGG+CGG | 0.690316 | 4.4:+19795878 | MS.gene35118:CDS |
| GTCTATTACAATGAAGCTGG+TGG | 0.693558 | 4.4:+19796016 | MS.gene35118:CDS |
| CCGTGGTAAGATGAGCACCA+AGG | 0.721405 | 4.4:+19797858 | MS.gene35118:CDS |
| AAGCAGTCAAATAACGACCG+TGG | 0.722335 | 4.4:-19797825 | None:intergenic |
| TGGTAAGATGAGCACCAAGG+AGG | 0.726300 | 4.4:+19797861 | MS.gene35118:CDS |
| GGATGAAATGGAGTTCACTG+AGG | 0.800296 | 4.4:+19798116 | MS.gene35118:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAAAATGGAACATA+CGG | - | chr4.4:19797533-19797552 | None:intergenic | 15.0% |
| !! | CATTTACAACAAATTAAATT+AGG | + | chr4.4:19797357-19797376 | MS.gene35118:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | - | chr4.4:19796442-19796461 | None:intergenic | 15.0% |
| !! | AATTAGGATTATAATCATCA+TGG | + | chr4.4:19797373-19797392 | MS.gene35118:intron | 20.0% |
| !! | TTAGATGATTAGATAATGAT+TGG | + | chr4.4:19796992-19797011 | MS.gene35118:intron | 20.0% |
| !!! | TTATATGTTTTTATTGCAGT+TGG | + | chr4.4:19797553-19797572 | MS.gene35118:intron | 20.0% |
| ! | AAGATAGCATTTAAAGAGAA+CGG | + | chr4.4:19797165-19797184 | MS.gene35118:intron | 25.0% |
| ! | ATTATCTAGAGATAAAGTGT+TGG | + | chr4.4:19797294-19797313 | MS.gene35118:intron | 25.0% |
| ! | ATTCTAGTAGGTTCAATTAT+AGG | + | chr4.4:19797406-19797425 | MS.gene35118:intron | 25.0% |
| ! | CAGAATGGAATATAATAGAA+TGG | + | chr4.4:19797056-19797075 | MS.gene35118:intron | 25.0% |
| ! | GTGAAATTCAAACAGAATAA+AGG | - | chr4.4:19796880-19796899 | None:intergenic | 25.0% |
| ! | GTTGAAATTCTGTAATCATT+AGG | + | chr4.4:19797466-19797485 | MS.gene35118:intron | 25.0% |
| ! | TTAGATAATGATTGGCAAAT+CGG | + | chr4.4:19797000-19797019 | MS.gene35118:intron | 25.0% |
| !! | TCTGTAATCATTAGGTTTTT+GGG | + | chr4.4:19797474-19797493 | MS.gene35118:intron | 25.0% |
| !! | TTATCTAGAGATAAAGTGTT+GGG | + | chr4.4:19797295-19797314 | MS.gene35118:intron | 25.0% |
| !! | TTCTGTAATCATTAGGTTTT+TGG | + | chr4.4:19797473-19797492 | MS.gene35118:intron | 25.0% |
| AATGTCTATTACAATGAAGC+TGG | + | chr4.4:19796013-19796032 | MS.gene35118:CDS | 30.0% | |
| ACCATCAACAAGATAGTTAT+TGG | - | chr4.4:19797227-19797246 | None:intergenic | 30.0% | |
| AGAGAAACATAAAGTGAAAG+TGG | + | chr4.4:19797124-19797143 | MS.gene35118:intron | 30.0% | |
| ATAAAGTGAAAGTGGTCATT+TGG | + | chr4.4:19797132-19797151 | MS.gene35118:intron | 30.0% | |
| ATTATAATCATCATGGTGGT+GGG | + | chr4.4:19797380-19797399 | MS.gene35118:intron | 30.0% | |
| GAATATAATAGAATGGACCA+GGG | + | chr4.4:19797063-19797082 | MS.gene35118:intron | 30.0% | |
| GAGTAACATGAATGATTTAG+TGG | + | chr4.4:19798143-19798162 | MS.gene35118:CDS | 30.0% | |
| GCTTCTTATATCGAAGATTA+GGG | + | chr4.4:19796645-19796664 | MS.gene35118:CDS | 30.0% | |
| TAGGATTATAATCATCATGG+TGG | + | chr4.4:19797376-19797395 | MS.gene35118:intron | 30.0% | |
| ! | AGTGTTGGGTTAATTAATGA+TGG | + | chr4.4:19797309-19797328 | MS.gene35118:intron | 30.0% |
| ! | ATTTCAAGTGTGTCATTCAT+TGG | + | chr4.4:19796594-19796613 | MS.gene35118:CDS | 30.0% |
| ! | TTATGATATCCTGGCAATTT+TGG | + | chr4.4:19796920-19796939 | MS.gene35118:intron | 30.0% |
| ! | TTTCAAGTGTGTCATTCATT+GGG | + | chr4.4:19796595-19796614 | MS.gene35118:CDS | 30.0% |
| ACTCTTCATACTTTGTTGAG+TGG | + | chr4.4:19797917-19797936 | MS.gene35118:CDS | 35.0% | |
| CAAACCCAACCATAAAGAAA+TGG | - | chr4.4:19797699-19797718 | None:intergenic | 35.0% | |
| CAATCAAAACCAAAATTGCC+AGG | - | chr4.4:19796932-19796951 | None:intergenic | 35.0% | |
| CGCTTCTTATATCGAAGATT+AGG | + | chr4.4:19796644-19796663 | MS.gene35118:CDS | 35.0% | |
| GAAGTTTGTAATGTGTGAAC+AGG | + | chr4.4:19796571-19796590 | MS.gene35118:intron | 35.0% | |
| GATTATAATCATCATGGTGG+TGG | + | chr4.4:19797379-19797398 | MS.gene35118:intron | 35.0% | |
| GCCAATAACTATCTTGTTGA+TGG | + | chr4.4:19797223-19797242 | MS.gene35118:intron | 35.0% | |
| GGAATATAATAGAATGGACC+AGG | + | chr4.4:19797062-19797081 | MS.gene35118:intron | 35.0% | |
| GTCTCCATTTCTTTATGGTT+GGG | + | chr4.4:19797692-19797711 | MS.gene35118:CDS | 35.0% | |
| GTTATGAGTGAGATCAAACA+AGG | - | chr4.4:19797432-19797451 | None:intergenic | 35.0% | |
| TCAAATACAGTTATCTACCC+TGG | - | chr4.4:19797083-19797102 | None:intergenic | 35.0% | |
| TGAAAATGCTGATGAATGCA+TGG | + | chr4.4:19796777-19796796 | MS.gene35118:CDS | 35.0% | |
| TGTTGAATTGCCAATGAAAG+TGG | - | chr4.4:19798004-19798023 | None:intergenic | 35.0% | |
| TTTCCTCACAACATCCAAAA+CGG | - | chr4.4:19796218-19796237 | None:intergenic | 35.0% | |
| ! | CTGTGCATTTTATGATATCC+TGG | + | chr4.4:19796911-19796930 | MS.gene35118:intron | 35.0% |
| ! | GATGTCTTTTGTAGACAGAA+TGG | + | chr4.4:19797041-19797060 | MS.gene35118:intron | 35.0% |
| ! | GTAATCTCATGTGTTGATGT+CGG | + | chr4.4:19796473-19796492 | MS.gene35118:intron | 35.0% |
| !! | AACTATCTTGTTGATGGTGT+TGG | + | chr4.4:19797229-19797248 | MS.gene35118:intron | 35.0% |
| !! | ACTATCTTGTTGATGGTGTT+GGG | + | chr4.4:19797230-19797249 | MS.gene35118:intron | 35.0% |
| !!! | TGAGTTGATTGATTCCGTTT+TGG | + | chr4.4:19796201-19796220 | MS.gene35118:CDS | 35.0% |
| AACGTCAACATCATACGATC+CGG | - | chr4.4:19796679-19796698 | None:intergenic | 40.0% | |
| AAGTTGGCATCCACTTTCAT+TGG | + | chr4.4:19797991-19798010 | MS.gene35118:CDS | 40.0% | |
| ACAACAAGTAACTCCACTCA+TGG | - | chr4.4:19797605-19797624 | None:intergenic | 40.0% | |
| ACAACTGTATCAGACACCTT+AGG | - | chr4.4:19796718-19796737 | None:intergenic | 40.0% | |
| ACCATAAAGAAATGGAGACG+AGG | - | chr4.4:19797691-19797710 | None:intergenic | 40.0% | |
| ACCTTTCGCCCAATTATTTC+CGG | - | chr4.4:19796164-19796183 | None:intergenic | 40.0% | |
| AGCAGTTCACAGCTATGTTT+AGG | + | chr4.4:19798055-19798074 | MS.gene35118:CDS | 40.0% | |
| AGGTTCAAGATCCATAAGCA+CGG | - | chr4.4:19796062-19796081 | None:intergenic | 40.0% | |
| ATTCAGGCACAGACAAGTTA+CGG | - | chr4.4:19797753-19797772 | None:intergenic | 40.0% | |
| CATCCATTCAAGAGATGTTC+AGG | + | chr4.4:19798022-19798041 | MS.gene35118:CDS | 40.0% | |
| CCATAAAGAAATGGAGACGA+GGG | - | chr4.4:19797690-19797709 | None:intergenic | 40.0% | |
| CGTCTCCATTTCTTTATGGT+TGG | + | chr4.4:19797691-19797710 | MS.gene35118:CDS | 40.0% | |
| GAGAATTGTGATTGCTTGCA+AGG | + | chr4.4:19796244-19796263 | MS.gene35118:CDS | 40.0% | |
| GATACGTTCAAGCTGAAGAT+CGG | - | chr4.4:19795993-19796012 | None:intergenic | 40.0% | |
| GCAGATAACTTCCCAGAATT+TGG | - | chr4.4:19795927-19795946 | None:intergenic | 40.0% | |
| GTCTATTACAATGAAGCTGG+TGG | + | chr4.4:19796016-19796035 | MS.gene35118:CDS | 40.0% | |
| GTGTGTGATATACCACCAAA+GGG | + | chr4.4:19797964-19797983 | MS.gene35118:CDS | 40.0% | |
| TAATGATTGGCAAATCGGAG+AGG | + | chr4.4:19797005-19797024 | MS.gene35118:intron | 40.0% | |
| TAGCAGAAATGAGGTGGTTA+AGG | - | chr4.4:19797582-19797601 | None:intergenic | 40.0% | |
| TATTACAATGAAGCTGGTGG+TGG | + | chr4.4:19796019-19796038 | MS.gene35118:CDS | 40.0% | |
| TCTCCTGAACATCTCTTGAA+TGG | - | chr4.4:19798028-19798047 | None:intergenic | 40.0% | |
| TGACCGAAAACGAAGTTATC+CGG | - | chr4.4:19796133-19796152 | None:intergenic | 40.0% | |
| TTCTGTGTTTCCTTCACCTA+AGG | + | chr4.4:19796699-19796718 | MS.gene35118:CDS | 40.0% | |
| TTGATCTCACTCATAACTGC+TGG | + | chr4.4:19797435-19797454 | MS.gene35118:intron | 40.0% | |
| TTTGGATGTTGTGAGGAAAG+AGG | + | chr4.4:19796219-19796238 | MS.gene35118:CDS | 40.0% | |
| ! | TAAGGTGTCTGATACAGTTG+TGG | + | chr4.4:19796717-19796736 | MS.gene35118:CDS | 40.0% |
| ! | TCACTCATAACTGCTGGTTA+TGG | + | chr4.4:19797441-19797460 | MS.gene35118:intron | 40.0% |
| ! | TGAATTGACTCAGCAGATGT+GGG | + | chr4.4:19797768-19797787 | MS.gene35118:CDS | 40.0% |
| ! | TGCTGATGAATGCATGGTTT+TGG | + | chr4.4:19796783-19796802 | MS.gene35118:CDS | 40.0% |
| !! | ACAGAAAGCGTTGCATTGTA+AGG | - | chr4.4:19796745-19796764 | None:intergenic | 40.0% |
| !! | ATTCCGTTTTGGATGTTGTG+AGG | + | chr4.4:19796212-19796231 | MS.gene35118:CDS | 40.0% |
| !! | GAAGATTAGGGAAGAGTATC+CGG | + | chr4.4:19796657-19796676 | MS.gene35118:CDS | 40.0% |
| !! | GTTGTTTCTGCTAGTGTTGA+TGG | + | chr4.4:19797255-19797274 | MS.gene35118:intron | 40.0% |
| !!! | ATGCATGGTTTTGGACAATG+AGG | + | chr4.4:19796792-19796811 | MS.gene35118:CDS | 40.0% |
| AAGAAATGGAGACGAGGGAA+TGG | - | chr4.4:19797685-19797704 | None:intergenic | 45.0% | |
| AAGCAGTCAAATAACGACCG+TGG | - | chr4.4:19797828-19797847 | None:intergenic | 45.0% | |
| ACCACCAAAGGGACTTAAGT+TGG | + | chr4.4:19797975-19797994 | MS.gene35118:CDS | 45.0% | |
| ACGCTAGACTTGACGTTGTT+GGG | - | chr4.4:19797946-19797965 | None:intergenic | 45.0% | |
| AGAAATGGAGACGAGGGAAT+GGG | - | chr4.4:19797684-19797703 | None:intergenic | 45.0% | |
| AGACAAGTTACGGTACTGCT+GGG | - | chr4.4:19797743-19797762 | None:intergenic | 45.0% | |
| AGAGAAATCCTCCACATCCA+AGG | + | chr4.4:19795875-19795894 | MS.gene35118:CDS | 45.0% | |
| AGAGAACGGATGAAAGCAGA+TGG | + | chr4.4:19797179-19797198 | MS.gene35118:intron | 45.0% | |
| ATCAATCAACTCAGCGCCTT+CGG | - | chr4.4:19796194-19796213 | None:intergenic | 45.0% | |
| CACATCTGCTGAGTCAATTC+AGG | - | chr4.4:19797769-19797788 | None:intergenic | 45.0% | |
| CACTCATGGTAGCAGAAATG+AGG | - | chr4.4:19797591-19797610 | None:intergenic | 45.0% | |
| CCCTCGTCTCCATTTCTTTA+TGG | + | chr4.4:19797687-19797706 | MS.gene35118:CDS | 45.0% | |
| CGTGTGTGATATACCACCAA+AGG | + | chr4.4:19797963-19797982 | MS.gene35118:CDS | 45.0% | |
| CTCATTTCTGCTACCATGAG+TGG | + | chr4.4:19797589-19797608 | MS.gene35118:CDS | 45.0% | |
| GATGCCAACTTAAGTCCCTT+TGG | - | chr4.4:19797982-19798001 | None:intergenic | 45.0% | |
| GATTCCACCGGACAATACAA+TGG | + | chr4.4:19795962-19795981 | MS.gene35118:CDS | 45.0% | |
| GGAACGAGAAACCTACAAGT+TGG | - | chr4.4:19796859-19796878 | None:intergenic | 45.0% | |
| GGAATCGCCATTGTATTGTC+CGG | - | chr4.4:19795972-19795991 | None:intergenic | 45.0% | |
| GGATGAAATGGAGTTCACTG+AGG | + | chr4.4:19798116-19798135 | MS.gene35118:CDS | 45.0% | |
| GTATCAGACACCTTAGGTGA+AGG | - | chr4.4:19796712-19796731 | None:intergenic | 45.0% | |
| GTGCTTATGGATCTTGAACC+TGG | + | chr4.4:19796061-19796080 | MS.gene35118:CDS | 45.0% | |
| GTGTGGCAAGCTTCAATGTA+CGG | - | chr4.4:19796837-19796856 | None:intergenic | 45.0% | |
| TCATGGTAGCAGAAATGAGG+TGG | - | chr4.4:19797588-19797607 | None:intergenic | 45.0% | |
| TGGGATCCTCTTGATGTCAA+GGG | - | chr4.4:19797724-19797743 | None:intergenic | 45.0% | |
| TGGTGAGGGAATGGATGAAA+TGG | + | chr4.4:19798104-19798123 | MS.gene35118:CDS | 45.0% | |
| TTTGCACCCTTGACATCAAG+AGG | + | chr4.4:19797715-19797734 | MS.gene35118:CDS | 45.0% | |
| ! | AACTTCGTTTTCGGTCAGTC+CGG | + | chr4.4:19796136-19796155 | MS.gene35118:CDS | 45.0% |
| ! | CAAGTGTGTCATTCATTGGG+AGG | + | chr4.4:19796598-19796617 | MS.gene35118:CDS | 45.0% |
| ! | CGACCGGATAACTTCGTTTT+CGG | + | chr4.4:19796127-19796146 | MS.gene35118:CDS | 45.0% |
| ! | CTGAATTGACTCAGCAGATG+TGG | + | chr4.4:19797767-19797786 | MS.gene35118:CDS | 45.0% |
| ! | CTTGTTGTCTACGTTTCCCT+GGG | + | chr4.4:19797617-19797636 | MS.gene35118:CDS | 45.0% |
| ! | GCTTTCTTGCATTGGTACAC+TGG | + | chr4.4:19798084-19798103 | MS.gene35118:CDS | 45.0% |
| ! | TGATGAGGAAGAGTATGAGG+AGG | + | chr4.4:19798197-19798216 | MS.gene35118:CDS | 45.0% |
| ! | TGCTGATGAGGAAGAGTATG+AGG | + | chr4.4:19798194-19798213 | MS.gene35118:CDS | 45.0% |
| ! | TTGCATTGGTACACTGGTGA+GGG | + | chr4.4:19798090-19798109 | MS.gene35118:CDS | 45.0% |
| !! | ACTTGTTGTCTACGTTTCCC+TGG | + | chr4.4:19797616-19797635 | MS.gene35118:CDS | 45.0% |
| !! | ATAATCATCATGGTGGTGGG+AGG | + | chr4.4:19797383-19797402 | MS.gene35118:intron | 45.0% |
| !! | GAGAAACCTACAAGTTGGTG+TGG | - | chr4.4:19796854-19796873 | None:intergenic | 45.0% |
| !! | AACATATAAAAAATTAAAAA+TGG | - | chr4.4:19797542-19797561 | None:intergenic | 5.0% |
| AAAGATCTGCCCAAACGGAC+CGG | - | chr4.4:19796107-19796126 | None:intergenic | 50.0% | |
| AAATCCTCCACATCCAAGGC+GGG | + | chr4.4:19795879-19795898 | MS.gene35118:CDS | 50.0% | |
| ACCAGATCGGAGCCAAATTC+TGG | + | chr4.4:19795912-19795931 | MS.gene35118:CDS | 50.0% | |
| ACCATGGATTCGCTTCGTTC+CGG | + | chr4.4:19796085-19796104 | MS.gene35118:CDS | 50.0% | |
| ACTGCTTCAGCAATGTTCCG+TGG | + | chr4.4:19797841-19797860 | MS.gene35118:CDS | 50.0% | |
| AGAGTATGAGGAGGACGAAG+AGG | + | chr4.4:19798206-19798225 | MS.gene35118:CDS | 50.0% | |
| AGCTTGCCACACCAACTTGT+AGG | + | chr4.4:19796845-19796864 | MS.gene35118:intron | 50.0% | |
| ATCGCCATTGTATTGTCCGG+TGG | - | chr4.4:19795969-19795988 | None:intergenic | 50.0% | |
| CACAGCTATGTTTAGGCGCA+AGG | + | chr4.4:19798062-19798081 | MS.gene35118:CDS | 50.0% | |
| CACGCTAGACTTGACGTTGT+TGG | - | chr4.4:19797947-19797966 | None:intergenic | 50.0% | |
| CAGACAAGTTACGGTACTGC+TGG | - | chr4.4:19797744-19797763 | None:intergenic | 50.0% | |
| CAGTAGCATCCTGGTATTGC+TGG | - | chr4.4:19798176-19798195 | None:intergenic | 50.0% | |
| CATTCATTGGGAGGTGGAAC+TGG | + | chr4.4:19796607-19796626 | MS.gene35118:CDS | 50.0% | |
| CCAGATCGGAGCCAAATTCT+GGG | + | chr4.4:19795913-19795932 | MS.gene35118:CDS | 50.0% | |
| CTGGGATCCTCTTGATGTCA+AGG | - | chr4.4:19797725-19797744 | None:intergenic | 50.0% | |
| GAAATCCTCCACATCCAAGG+CGG | + | chr4.4:19795878-19795897 | MS.gene35118:CDS | 50.0% | |
| GCCAACTTAAGTCCCTTTGG+TGG | - | chr4.4:19797979-19797998 | None:intergenic | 50.0% | |
| GCCGGAAATAATTGGGCGAA+AGG | + | chr4.4:19796160-19796179 | MS.gene35118:CDS | 50.0% | |
| GCGAAAGGTCATTACACCGA+AGG | + | chr4.4:19796175-19796194 | MS.gene35118:CDS | 50.0% | |
| GGATCTTGAACCTGGAACCA+TGG | + | chr4.4:19796069-19796088 | MS.gene35118:CDS | 50.0% | |
| GGTCGAAAGATCTGCCCAAA+CGG | - | chr4.4:19796112-19796131 | None:intergenic | 50.0% | |
| GTATTGTCCGGTGGAATCGA+TGG | - | chr4.4:19795960-19795979 | None:intergenic | 50.0% | |
| GTTTGGGCAGATCTTTCGAC+CGG | + | chr4.4:19796111-19796130 | MS.gene35118:CDS | 50.0% | |
| TAAGATGAGCACCAAGGAGG+TGG | + | chr4.4:19797864-19797883 | MS.gene35118:CDS | 50.0% | |
| TCTGACACGACTTGAACACG+TGG | + | chr4.4:19796345-19796364 | MS.gene35118:intron | 50.0% | |
| TGGTAAGATGAGCACCAAGG+AGG | + | chr4.4:19797861-19797880 | MS.gene35118:CDS | 50.0% | |
| TTGGTACACTGGTGAGGGAA+TGG | + | chr4.4:19798095-19798114 | MS.gene35118:CDS | 50.0% | |
| ! | AGTCCGGTGCCGGAAATAAT+TGG | + | chr4.4:19796152-19796171 | MS.gene35118:CDS | 50.0% |
| ! | CTTGCATTGGTACACTGGTG+AGG | + | chr4.4:19798089-19798108 | MS.gene35118:CDS | 50.0% |
| ! | GTCCGGTGCCGGAAATAATT+GGG | + | chr4.4:19796153-19796172 | MS.gene35118:CDS | 50.0% |
| ! | GTGTGTCATTCATTGGGAGG+TGG | + | chr4.4:19796601-19796620 | MS.gene35118:CDS | 50.0% |
| !! | ACAATGAAGCTGGTGGTGGA+AGG | + | chr4.4:19796023-19796042 | MS.gene35118:CDS | 50.0% |
| !! | AGGTGGAACTGGTTCTGGAA+TGG | + | chr4.4:19796618-19796637 | MS.gene35118:CDS | 50.0% |
| !! | CCTTGGTGCTCATCTTACCA+CGG | - | chr4.4:19797861-19797880 | None:intergenic | 50.0% |
| !! | GCTAGTGTTGATGGCAATGC+TGG | + | chr4.4:19797264-19797283 | MS.gene35118:intron | 50.0% |
| !! | GGTGGAACTGGTTCTGGAAT+GGG | + | chr4.4:19796619-19796638 | MS.gene35118:CDS | 50.0% |
| ACCGGAACGAAGCGAATCCA+TGG | - | chr4.4:19796089-19796108 | None:intergenic | 55.0% | |
| AGATCAGAGTTCAGCTGCCC+AGG | - | chr4.4:19797637-19797656 | None:intergenic | 55.0% | |
| CCAGGATGCTACTGCTGATG+AGG | + | chr4.4:19798182-19798201 | MS.gene35118:CDS | 55.0% | |
| CCGTGGTAAGATGAGCACCA+AGG | + | chr4.4:19797858-19797877 | MS.gene35118:CDS | 55.0% | |
| CCTCATCAGCAGTAGCATCC+TGG | - | chr4.4:19798185-19798204 | None:intergenic | 55.0% | |
| CGAAGCGAATCCATGGTTCC+AGG | - | chr4.4:19796082-19796101 | None:intergenic | 55.0% | |
| CGCCCAATTATTTCCGGCAC+CGG | - | chr4.4:19796158-19796177 | None:intergenic | 55.0% | |
| GAGGAGGACGAAGAGGAGAT+TGG | + | chr4.4:19798213-19798232 | MS.gene35118:CDS | 55.0% | |
| GATCAGAGTTCAGCTGCCCA+GGG | - | chr4.4:19797636-19797655 | None:intergenic | 55.0% | |
| GGAGACGAGGGAATGGGATA+AGG | - | chr4.4:19797678-19797697 | None:intergenic | 55.0% | |
| GGCGCAAGGCTTTCTTGCAT+TGG | + | chr4.4:19798076-19798095 | MS.gene35118:CDS | 55.0% | |
| GGGCAATGCGGTAACCAGAT+CGG | + | chr4.4:19795899-19795918 | MS.gene35118:CDS | 55.0% | |
| GTCAAATAACGACCGTGGCG+TGG | - | chr4.4:19797823-19797842 | None:intergenic | 55.0% | |
| ! | CCCAGAATTTGGCTCCGATC+TGG | - | chr4.4:19795916-19795935 | None:intergenic | 55.0% |
| ! | GGCAGAGTACCAGCAATACC+AGG | + | chr4.4:19798164-19798183 | MS.gene35118:CDS | 55.0% |
| ! | TTGGGAGGTGGAACTGGTTC+TGG | + | chr4.4:19796613-19796632 | MS.gene35118:CDS | 55.0% |
| !! | GAACACGCCATCGATTCCAC+CGG | + | chr4.4:19795950-19795969 | MS.gene35118:CDS | 55.0% |
| !! | GGTGGTGGGAGGATTCTAGT+AGG | + | chr4.4:19797394-19797413 | MS.gene35118:intron | 55.0% |
| AGATCCATAAGCACGGCGCG+TGG | - | chr4.4:19796055-19796074 | None:intergenic | 60.0% | |
| AGCACCAACACCTCTGACCG+AGG | - | chr4.4:19796522-19796541 | None:intergenic | 60.0% | |
| ATTGCCCGCCTTGGATGTGG+AGG | - | chr4.4:19795886-19795905 | None:intergenic | 60.0% | |
| CACATCCAAGGCGGGCAATG+CGG | + | chr4.4:19795887-19795906 | MS.gene35118:CDS | 60.0% | |
| CATCTGCTCGTCCACCTCCT+TGG | - | chr4.4:19797878-19797897 | None:intergenic | 60.0% | |
| CGCTTCGTTCCGGTCCGTTT+GGG | + | chr4.4:19796095-19796114 | MS.gene35118:CDS | 60.0% | |
| TCAGACACCAGACGCGTCCT+CGG | + | chr4.4:19796502-19796521 | MS.gene35118:intron | 60.0% | |
| TCGCTTCGTTCCGGTCCGTT+TGG | + | chr4.4:19796094-19796113 | MS.gene35118:CDS | 60.0% | |
| ! | GTTTTCGGTCAGTCCGGTGC+CGG | + | chr4.4:19796142-19796161 | MS.gene35118:CDS | 60.0% |
| CGCATTGCCCGCCTTGGATG+TGG | - | chr4.4:19795889-19795908 | None:intergenic | 65.0% | |
| CGTTCCACGCGCCGTGCTTA+TGG | + | chr4.4:19796048-19796067 | MS.gene35118:CDS | 65.0% | |
| GGTTACCGCATTGCCCGCCT+TGG | - | chr4.4:19795895-19795914 | None:intergenic | 65.0% | |
| TGCGCTGCAGATCCACGCCA+CGG | + | chr4.4:19797808-19797827 | MS.gene35118:CDS | 65.0% | |
| ! | GCGTCCTCGGTCAGAGGTGT+TGG | + | chr4.4:19796515-19796534 | MS.gene35118:intron | 65.0% |
| CCAGACGCGTCCTCGGTCAG+AGG | + | chr4.4:19796509-19796528 | MS.gene35118:intron | 70.0% | |
| CCTCTGACCGAGGACGCGTC+TGG | - | chr4.4:19796512-19796531 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19795872 | 19798242 | 19795872 | ID=MS.gene35118 |
| chr4.4 | mRNA | 19795872 | 19798242 | 19795872 | ID=MS.gene35118.t1;Parent=MS.gene35118 |
| chr4.4 | exon | 19795872 | 19796265 | 19795872 | ID=MS.gene35118.t1.exon1;Parent=MS.gene35118.t1 |
| chr4.4 | CDS | 19795872 | 19796265 | 19795872 | ID=cds.MS.gene35118.t1;Parent=MS.gene35118.t1 |
| chr4.4 | exon | 19796593 | 19796862 | 19796593 | ID=MS.gene35118.t1.exon2;Parent=MS.gene35118.t1 |
| chr4.4 | CDS | 19796593 | 19796862 | 19796593 | ID=cds.MS.gene35118.t1;Parent=MS.gene35118.t1 |
| chr4.4 | exon | 19797572 | 19798242 | 19797572 | ID=MS.gene35118.t1.exon3;Parent=MS.gene35118.t1 |
| chr4.4 | CDS | 19797572 | 19798242 | 19797572 | ID=cds.MS.gene35118.t1;Parent=MS.gene35118.t1 |
| Gene Sequence |
| Protein sequence |
