Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69396.t1 | PNX96892.1 | 99.8 | 449 | 1 | 0 | 1 | 449 | 1 | 449 | 4.90E-261 | 909.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69396.t1 | Q39445 | 98.4 | 449 | 7 | 0 | 1 | 449 | 1 | 449 | 3.5e-260 | 898.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69396.t1 | A0A2K3N1J7 | 99.8 | 449 | 1 | 0 | 1 | 449 | 1 | 449 | 3.5e-261 | 909.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene69396 | 0.808081 | 3.69E-50 | -1.69E-46 |
| MS.gene050818 | MS.gene69396 | 0.831822 | 1.34E-55 | -1.69E-46 |
| MS.gene050894 | MS.gene69396 | 0.864059 | 1.60E-64 | -1.69E-46 |
| MS.gene056266 | MS.gene69396 | -0.803249 | 3.81E-49 | -1.69E-46 |
| MS.gene057195 | MS.gene69396 | 0.814945 | 1.19E-51 | -1.69E-46 |
| MS.gene060076 | MS.gene69396 | 0.819568 | 1.08E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69396.t1 | MTR_3g113970 | 99.333 | 450 | 2 | 1 | 1 | 449 | 1 | 450 | 0.0 | 936 |
| MS.gene69396.t1 | MTR_2g031310 | 94.907 | 432 | 20 | 1 | 1 | 432 | 1 | 430 | 0.0 | 839 |
| MS.gene69396.t1 | MTR_7g089120 | 93.750 | 432 | 25 | 1 | 1 | 432 | 1 | 430 | 0.0 | 833 |
| MS.gene69396.t1 | MTR_4g094535 | 93.981 | 432 | 24 | 1 | 1 | 432 | 1 | 430 | 0.0 | 832 |
| MS.gene69396.t1 | MTR_1g101130 | 93.287 | 432 | 27 | 1 | 1 | 432 | 1 | 430 | 0.0 | 831 |
| MS.gene69396.t1 | MTR_4g019110 | 92.593 | 432 | 30 | 1 | 1 | 432 | 1 | 430 | 0.0 | 827 |
| MS.gene69396.t1 | MTR_4g017630 | 93.056 | 432 | 28 | 1 | 1 | 432 | 1 | 430 | 0.0 | 825 |
| MS.gene69396.t1 | MTR_4g019090 | 92.361 | 432 | 31 | 1 | 1 | 432 | 1 | 430 | 0.0 | 824 |
| MS.gene69396.t1 | MTR_8g098360 | 92.558 | 430 | 30 | 1 | 1 | 430 | 1 | 428 | 0.0 | 820 |
| MS.gene69396.t1 | MTR_8g107250 | 89.640 | 444 | 40 | 3 | 1 | 441 | 1 | 441 | 0.0 | 817 |
| MS.gene69396.t1 | MTR_8g085980 | 40.553 | 434 | 250 | 1 | 1 | 426 | 1 | 434 | 1.28e-124 | 369 |
| MS.gene69396.t1 | MTR_1g106005 | 40.611 | 458 | 244 | 4 | 1 | 447 | 1 | 441 | 9.92e-123 | 365 |
| MS.gene69396.t1 | MTR_3g110720 | 40.220 | 455 | 244 | 4 | 1 | 444 | 1 | 438 | 1.56e-122 | 364 |
| MS.gene69396.t1 | MTR_4g097830 | 40.220 | 455 | 244 | 4 | 1 | 444 | 1 | 438 | 3.60e-122 | 363 |
| MS.gene69396.t1 | MTR_7g085800 | 39.159 | 452 | 253 | 2 | 1 | 444 | 1 | 438 | 4.62e-122 | 363 |
| MS.gene69396.t1 | MTR_6g029190 | 39.955 | 448 | 259 | 3 | 1 | 438 | 1 | 448 | 5.82e-122 | 363 |
| MS.gene69396.t1 | MTR_2g041670 | 36.947 | 452 | 268 | 4 | 1 | 440 | 1 | 447 | 3.35e-100 | 308 |
| MS.gene69396.t1 | MTR_7g117050 | 35.498 | 462 | 267 | 10 | 2 | 444 | 3 | 452 | 1.49e-96 | 298 |
| MS.gene69396.t1 | MTR_2g041400 | 36.682 | 428 | 258 | 3 | 1 | 420 | 1 | 423 | 1.56e-96 | 296 |
| MS.gene69396.t1 | MTR_3g063410 | 32.432 | 148 | 92 | 1 | 258 | 397 | 30 | 177 | 1.99e-27 | 108 |
| MS.gene69396.t1 | MTR_3g063410 | 30.370 | 135 | 86 | 1 | 271 | 397 | 4 | 138 | 2.27e-20 | 87.8 |
| MS.gene69396.t1 | MTR_4g093670 | 82.759 | 29 | 5 | 0 | 379 | 407 | 1 | 29 | 8.61e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69396.t1 | AT1G75780 | 94.676 | 432 | 22 | 1 | 1 | 432 | 1 | 431 | 0.0 | 840 |
| MS.gene69396.t1 | AT1G20010 | 94.213 | 432 | 24 | 1 | 1 | 432 | 1 | 431 | 0.0 | 836 |
| MS.gene69396.t1 | AT5G12250 | 93.287 | 432 | 27 | 1 | 1 | 432 | 1 | 430 | 0.0 | 832 |
| MS.gene69396.t1 | AT5G23860 | 93.519 | 432 | 26 | 1 | 1 | 432 | 1 | 430 | 0.0 | 831 |
| MS.gene69396.t1 | AT5G23860 | 93.519 | 432 | 26 | 1 | 1 | 432 | 1 | 430 | 0.0 | 831 |
| MS.gene69396.t1 | AT5G62700 | 93.287 | 432 | 27 | 1 | 1 | 432 | 1 | 430 | 0.0 | 828 |
| MS.gene69396.t1 | AT5G62690 | 93.287 | 432 | 27 | 1 | 1 | 432 | 1 | 430 | 0.0 | 828 |
| MS.gene69396.t1 | AT2G29550 | 93.072 | 433 | 28 | 1 | 1 | 433 | 1 | 431 | 0.0 | 825 |
| MS.gene69396.t1 | AT5G44340 | 92.361 | 432 | 31 | 1 | 1 | 432 | 1 | 430 | 0.0 | 820 |
| MS.gene69396.t1 | AT4G20890 | 93.023 | 430 | 28 | 1 | 1 | 430 | 1 | 428 | 0.0 | 819 |
| MS.gene69396.t1 | AT1G64740 | 40.092 | 434 | 252 | 1 | 1 | 426 | 1 | 434 | 2.43e-124 | 369 |
| MS.gene69396.t1 | AT5G19780 | 40.323 | 434 | 251 | 1 | 1 | 426 | 1 | 434 | 4.82e-124 | 368 |
| MS.gene69396.t1 | AT5G19770 | 40.323 | 434 | 251 | 1 | 1 | 426 | 1 | 434 | 4.82e-124 | 368 |
| MS.gene69396.t1 | AT1G04820 | 40.732 | 437 | 245 | 3 | 1 | 426 | 1 | 434 | 3.42e-122 | 363 |
| MS.gene69396.t1 | AT1G50010 | 40.732 | 437 | 245 | 3 | 1 | 426 | 1 | 434 | 3.42e-122 | 363 |
| MS.gene69396.t1 | AT4G14960 | 40.503 | 437 | 246 | 3 | 1 | 426 | 1 | 434 | 2.57e-121 | 361 |
| MS.gene69396.t1 | AT4G14960 | 40.360 | 389 | 218 | 3 | 1 | 378 | 1 | 386 | 6.59e-102 | 311 |
| MS.gene69396.t1 | AT5G05620 | 35.065 | 462 | 269 | 10 | 2 | 444 | 3 | 452 | 1.13e-95 | 296 |
| MS.gene69396.t1 | AT3G61650 | 34.979 | 466 | 272 | 10 | 2 | 448 | 3 | 456 | 1.98e-95 | 295 |
Find 121 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAGAATTTGGATCCAATT+TGG | 0.211203 | 3.3:+93256654 | None:intergenic |
| AATCTGGTGCTGGTAATAAT+TGG | 0.217101 | 3.3:-93256409 | MS.gene69396:CDS |
| ACCAAATTGGATCCAAATTC+TGG | 0.227415 | 3.3:-93256655 | MS.gene69396:CDS |
| GCATATCACCTCCCAGAATT+TGG | 0.235569 | 3.3:+93256643 | None:intergenic |
| CTTGGAGGAGGCACGGGTTC+TGG | 0.250950 | 3.3:-93254730 | MS.gene69396:CDS |
| CACATTTGTTGAGTCAGTTC+CGG | 0.265997 | 3.3:+93254192 | None:intergenic |
| CTTCAATTCAGGAGATGTTT+AGG | 0.278983 | 3.3:-93253936 | MS.gene69396:CDS |
| TGGGAACTCAACTTCAATTC+AGG | 0.292593 | 3.3:-93253947 | MS.gene69396:CDS |
| ACATGTTGTCTGAGGTTTCC+TGG | 0.293676 | 3.3:-93254342 | MS.gene69396:CDS |
| TGTTCCTAGAGCAGTTCTTA+TGG | 0.307963 | 3.3:-93256513 | MS.gene69396:CDS |
| GGCCAATGCGGTAACCAAAT+TGG | 0.311892 | 3.3:-93256668 | MS.gene69396:CDS |
| GGACGACATCTTCAAATTCT+TGG | 0.312961 | 3.3:+93253978 | None:intergenic |
| ACATTTGTTGAGTCAGTTCC+GGG | 0.324818 | 3.3:+93254193 | None:intergenic |
| AGCAGCACACATCATATTCT+TGG | 0.353564 | 3.3:+93254164 | None:intergenic |
| GATTTGTTCATCAACCTCTT+TGG | 0.362636 | 3.3:+93254083 | None:intergenic |
| CTATTGCATCCTGGTATTGT+TGG | 0.375777 | 3.3:+93253785 | None:intergenic |
| ATTCTTCATACTTTGTTGAA+TGG | 0.376461 | 3.3:-93254041 | MS.gene69396:CDS |
| CTCTATTGATATCAAAGATT+AGG | 0.378228 | 3.3:-93254699 | MS.gene69396:CDS |
| CCCAGTATACCAATGCAAAA+AGG | 0.378377 | 3.3:+93253873 | None:intergenic |
| CACTTTATGACATTTGCTTC+AGG | 0.383936 | 3.3:-93254528 | MS.gene69396:CDS |
| ACACTAGACTTCACATTGTT+GGG | 0.386553 | 3.3:+93254015 | None:intergenic |
| CACACTAGACTTCACATTGT+TGG | 0.390184 | 3.3:+93254014 | None:intergenic |
| CGTCCTGATAATTTCGTGTT+CGG | 0.393752 | 3.3:-93256434 | MS.gene69396:CDS |
| TCTATTGATATCAAAGATTA+GGG | 0.396270 | 3.3:-93254698 | MS.gene69396:CDS |
| CAAGTTTGCCACTCCCTTGG+AGG | 0.398051 | 3.3:-93254745 | MS.gene69396:CDS |
| AGAGAGTAACATGAATGATT+TGG | 0.405537 | 3.3:-93253818 | MS.gene69396:CDS |
| CACTCCCTTGGAGGAGGCAC+GGG | 0.410186 | 3.3:-93254736 | MS.gene69396:CDS |
| AATTTCGTGTTCGGACAATC+TGG | 0.410356 | 3.3:-93256425 | MS.gene69396:CDS |
| TTTCAAGTTTGCCACTCCCT+TGG | 0.411514 | 3.3:-93254748 | MS.gene69396:CDS |
| AGCAGTTTACTGCAATGTTC+CGG | 0.413290 | 3.3:-93253903 | MS.gene69396:CDS |
| TGTCCGAACACGAAATTATC+AGG | 0.413771 | 3.3:+93256431 | None:intergenic |
| ACAGATAGTGTAGCATTATA+TGG | 0.417861 | 3.3:+93254601 | None:intergenic |
| GACGACATCTTCAAATTCTT+GGG | 0.419923 | 3.3:+93253979 | None:intergenic |
| AGTCAAGTATCGGCCATGTC+GGG | 0.423301 | 3.3:+93254137 | None:intergenic |
| AGAGAGATCTTGCACGTTCA+AGG | 0.432109 | 3.3:-93256692 | MS.gene69396:CDS |
| GTGTATTACAATGAAGCTTC+TGG | 0.433261 | 3.3:-93256545 | MS.gene69396:CDS |
| ATCTGGTGCTGGTAATAATT+GGG | 0.444114 | 3.3:-93256408 | MS.gene69396:CDS |
| ACAACTGTGTCAGATACCTT+TGG | 0.444799 | 3.3:+93254628 | None:intergenic |
| GGAGGCACGGGTTCTGGCAT+GGG | 0.445967 | 3.3:-93254724 | MS.gene69396:CDS |
| GTCAATCAACTCAGCACCTT+CGG | 0.448375 | 3.3:+93256370 | None:intergenic |
| ACCTTCGGTATAATGACCTT+TGG | 0.450279 | 3.3:+93256385 | None:intergenic |
| GTCAATTGAACTCTGATCTC+AGG | 0.457782 | 3.3:-93254320 | MS.gene69396:CDS |
| TTGGTATACTGGGGAGGGAA+TGG | 0.459874 | 3.3:-93253863 | MS.gene69396:CDS |
| AGTATCAGATCTGGTCCGTT+TGG | 0.467213 | 3.3:-93256467 | MS.gene69396:CDS |
| CCACTCCCTTGGAGGAGGCA+CGG | 0.467869 | 3.3:-93254737 | MS.gene69396:CDS |
| ATCCAATTTGGTTACCGCAT+TGG | 0.468483 | 3.3:+93256666 | None:intergenic |
| CCTCCTCAGCTATTGCATCC+TGG | 0.470174 | 3.3:+93253776 | None:intergenic |
| AAAGTAAGCATCATTCTGTC+TGG | 0.471664 | 3.3:+93254667 | None:intergenic |
| CCAAATTGGATCCAAATTCT+GGG | 0.472580 | 3.3:-93256654 | MS.gene69396:CDS |
| AGAAGGTGAGGAACATTATG+AGG | 0.473711 | 3.3:-93253737 | MS.gene69396:CDS |
| GAGTCAGTTCCGGGACAGTA+AGG | 0.474292 | 3.3:+93254202 | None:intergenic |
| AGGTGGAAATGATACTCAAT+TGG | 0.476330 | 3.3:-93256579 | MS.gene69396:CDS |
| AGGAGGCACGGGTTCTGGCA+TGG | 0.476981 | 3.3:-93254725 | MS.gene69396:CDS |
| TACACTATCTGTCCACCAAC+TGG | 0.477941 | 3.3:-93254590 | MS.gene69396:CDS |
| TGATTTCTGCAACTATGAGC+GGG | 0.478950 | 3.3:-93254368 | MS.gene69396:CDS |
| GAGAATTGTGATTGCTTGCA+AGG | 0.495773 | 3.3:-93256317 | MS.gene69396:intron |
| TTTGCACCTCTCACTTCTCG+TGG | 0.496790 | 3.3:-93254243 | MS.gene69396:CDS |
| GAACACGGCATTGATCCAAC+TGG | 0.497409 | 3.3:-93256617 | MS.gene69396:CDS |
| AGTTGAGTTCCCAATAAAAG+TGG | 0.497826 | 3.3:+93253957 | None:intergenic |
| GAAGATGATTATGAAGAAGA+AGG | 0.502318 | 3.3:-93253754 | MS.gene69396:CDS |
| AAAAGTGAAGACGAGGGAAT+GGG | 0.507198 | 3.3:+93254277 | None:intergenic |
| GTGTCAGATACCTTTGGAGA+TGG | 0.509553 | 3.3:+93254634 | None:intergenic |
| GTGTTCGGACAATCTGGTGC+TGG | 0.513250 | 3.3:-93256419 | MS.gene69396:CDS |
| TTGCATTGGTATACTGGGGA+GGG | 0.517335 | 3.3:-93253868 | MS.gene69396:CDS |
| CCGTGCCTCCTCCAAGGGAG+TGG | 0.517493 | 3.3:+93254737 | None:intergenic |
| GTTCTTATGGATCTTGAGCC+TGG | 0.519442 | 3.3:-93256500 | MS.gene69396:CDS |
| CTGATACTTTCCATGGTACC+AGG | 0.522407 | 3.3:+93256482 | None:intergenic |
| TGGGGAGGGAATGGATGAGA+TGG | 0.529822 | 3.3:-93253854 | MS.gene69396:CDS |
| GTTTGCCACTCCCTTGGAGG+AGG | 0.531497 | 3.3:-93254742 | MS.gene69396:CDS |
| ACCATGGAAAGTATCAGATC+TGG | 0.532094 | 3.3:-93256476 | MS.gene69396:CDS |
| GGAAAATATGTAAGCGAAGG+TGG | 0.533206 | 3.3:-93256596 | MS.gene69396:CDS |
| GAACTCTGATCTCAGGAAGC+TGG | 0.535008 | 3.3:-93254313 | MS.gene69396:CDS |
| TGTCAGATACCTTTGGAGAT+GGG | 0.536713 | 3.3:+93254635 | None:intergenic |
| GGATCTTGAGCCTGGTACCA+TGG | 0.537137 | 3.3:-93256492 | MS.gene69396:CDS |
| CAATTCAGGAGATGTTTAGG+AGG | 0.541715 | 3.3:-93253933 | MS.gene69396:CDS |
| CAGAACCCGTGCCTCCTCCA+AGG | 0.541892 | 3.3:+93254731 | None:intergenic |
| CAGTCAAGTATCGGCCATGT+CGG | 0.542390 | 3.3:+93254136 | None:intergenic |
| AGATCCATAAGAACTGCTCT+AGG | 0.542823 | 3.3:+93256509 | None:intergenic |
| AGAGGTGATACTTACAGCTA+GGG | 0.546469 | 3.3:+93254488 | None:intergenic |
| AATGGATGAGATGGAGTTCA+CGG | 0.548252 | 3.3:-93253845 | MS.gene69396:CDS |
| GTATGTATCCCTTACTGTCC+CGG | 0.555378 | 3.3:-93254211 | MS.gene69396:CDS |
| TTGCACCTCTCACTTCTCGT+GGG | 0.556219 | 3.3:-93254242 | MS.gene69396:CDS |
| AGAAAATGCAGATGAGTGTA+TGG | 0.557071 | 3.3:-93254566 | MS.gene69396:CDS |
| CGGAACTGACTCAACAAATG+TGG | 0.558969 | 3.3:-93254191 | MS.gene69396:CDS |
| TTGCAGATGCAGTCAAGTAT+CGG | 0.563760 | 3.3:+93254127 | None:intergenic |
| GACATCTTCAAATTCTTGGG+TGG | 0.565762 | 3.3:+93253982 | None:intergenic |
| ACATCTTCAAATTCTTGGGT+GGG | 0.570008 | 3.3:+93253983 | None:intergenic |
| TTTGCATTGGTATACTGGGG+AGG | 0.575042 | 3.3:-93253869 | MS.gene69396:CDS |
| CCAGGATGCAATAGCTGAGG+AGG | 0.575079 | 3.3:-93253776 | MS.gene69396:CDS |
| TGATTATGAAGAAGAAGGTG+AGG | 0.578671 | 3.3:-93253749 | MS.gene69396:CDS |
| ACCAGATCTGATACTTTCCA+TGG | 0.579539 | 3.3:+93256475 | None:intergenic |
| GCTGGTAATAATTGGGCCAA+AGG | 0.579903 | 3.3:-93256401 | MS.gene69396:CDS |
| AGAACCCGTGCCTCCTCCAA+GGG | 0.582447 | 3.3:+93254732 | None:intergenic |
| AGATCAGAGTTCAATTGACC+AGG | 0.587313 | 3.3:+93254324 | None:intergenic |
| ACTGCATCTGCAATGTTCAG+AGG | 0.592344 | 3.3:-93254117 | MS.gene69396:CDS |
| AATTCAGGAGATGTTTAGGA+GGG | 0.594241 | 3.3:-93253932 | MS.gene69396:CDS |
| GTCAAGTATCGGCCATGTCG+GGG | 0.598025 | 3.3:+93254138 | None:intergenic |
| CTGATTTCTGCAACTATGAG+CGG | 0.598763 | 3.3:-93254369 | MS.gene69396:CDS |
| AGCAGAGTACCAACAATACC+AGG | 0.600651 | 3.3:-93253794 | MS.gene69396:CDS |
| GCGGGGTTACATGTTGTCTG+AGG | 0.600876 | 3.3:-93254350 | MS.gene69396:CDS |
| AGTCAGTTCCGGGACAGTAA+GGG | 0.601789 | 3.3:+93254203 | None:intergenic |
| GAAATGATACTCAATTGGAA+AGG | 0.601847 | 3.3:-93256574 | MS.gene69396:CDS |
| GGACGAAAGATCTTACCAAA+CGG | 0.603254 | 3.3:+93256452 | None:intergenic |
| GGAACTGACTCAACAAATGT+GGG | 0.606867 | 3.3:-93254190 | MS.gene69396:CDS |
| ACAATGAAGCTTCTGGTGGT+AGG | 0.609506 | 3.3:-93256538 | MS.gene69396:CDS |
| GCCAAAGGTCATTATACCGA+AGG | 0.611568 | 3.3:-93256386 | MS.gene69396:CDS |
| TCATAGTTGCAGAAATCAGA+TGG | 0.613887 | 3.3:+93254373 | None:intergenic |
| CACGTTCAAGGTGGCCAATG+CGG | 0.629178 | 3.3:-93256680 | MS.gene69396:CDS |
| ACTGGAAAATATGTAAGCGA+AGG | 0.632683 | 3.3:-93256599 | MS.gene69396:CDS |
| TGTGCTGCTGATCCCCGACA+TGG | 0.635297 | 3.3:-93254150 | MS.gene69396:CDS |
| AGGAAAGATGAGCACCAAAG+AGG | 0.640000 | 3.3:-93254097 | MS.gene69396:CDS |
| TGAGACCCACGAGAAGTGAG+AGG | 0.646294 | 3.3:+93254237 | None:intergenic |
| ATTGATATCAAAGATTAGGG+AGG | 0.653042 | 3.3:-93254695 | MS.gene69396:CDS |
| GATTTCTGCAACTATGAGCG+GGG | 0.659247 | 3.3:-93254367 | MS.gene69396:CDS |
| ATACCAGGATGCAATAGCTG+AGG | 0.682886 | 3.3:-93253779 | MS.gene69396:CDS |
| GAGGTGATACTTACAGCTAG+GGG | 0.687744 | 3.3:+93254489 | None:intergenic |
| GAGGTGATATGCGATGAACA+CGG | 0.708035 | 3.3:-93256632 | MS.gene69396:CDS |
| GAGATCTTGCACGTTCAAGG+TGG | 0.713098 | 3.3:-93256689 | MS.gene69396:CDS |
| TATTACAATGAAGCTTCTGG+TGG | 0.730410 | 3.3:-93256542 | MS.gene69396:CDS |
| AATTGGATCCAAATTCTGGG+AGG | 0.748217 | 3.3:-93256651 | MS.gene69396:CDS |
| GGATGAGATGGAGTTCACGG+AGG | 0.764427 | 3.3:-93253842 | MS.gene69396:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTATTTATAAAAT+AGG | - | chr3.3:93254666-93254685 | MS.gene69396:CDS | 0.0% |
| !! | AAAAAAAACAATATATTTCT+TGG | + | chr3.3:93255322-93255341 | None:intergenic | 10.0% |
| !!! | AGAACTAATTTTTATAAAAA+TGG | - | chr3.3:93254947-93254966 | MS.gene69396:intron | 10.0% |
| !!! | CATAAAATCTATTTTTTTAA+AGG | - | chr3.3:93255050-93255069 | MS.gene69396:intron | 10.0% |
| !!! | GAAAAATAATAACTTTTTTT+TGG | + | chr3.3:93254769-93254788 | None:intergenic | 10.0% |
| !!! | TTTATAAAAATGGTTTTTTA+TGG | - | chr3.3:93254957-93254976 | MS.gene69396:intron | 10.0% |
| !! | AGCAATTATAAAAAAAGTAA+AGG | + | chr3.3:93255088-93255107 | None:intergenic | 15.0% |
| !!! | AATAATGATGGTATATTTTA+GGG | - | chr3.3:93254498-93254517 | MS.gene69396:intron | 15.0% |
| !!! | TAATAATGATGGTATATTTT+AGG | - | chr3.3:93254497-93254516 | MS.gene69396:intron | 15.0% |
| !!! | TTTTTGTGTAATAATAATGA+TGG | - | chr3.3:93254486-93254505 | MS.gene69396:intron | 15.0% |
| !! | AATCTGAATTTATTTGTGTT+TGG | + | chr3.3:93254990-93255009 | None:intergenic | 20.0% |
| !! | TATTATTACACAAAAAGTCA+CGG | + | chr3.3:93254482-93254501 | None:intergenic | 20.0% |
| !! | TCTACCAAAAAAAAAAATCA+TGG | - | chr3.3:93255177-93255196 | MS.gene69396:intron | 20.0% |
| !! | TCTATTGATATCAAAGATTA+GGG | - | chr3.3:93255726-93255745 | MS.gene69396:intron | 20.0% |
| !!! | AAATTTCATTCAATTTTGTC+AGG | - | chr3.3:93255652-93255671 | MS.gene69396:intron | 20.0% |
| ! | AATTCCAATGTTTGTCAAAA+TGG | + | chr3.3:93255235-93255254 | None:intergenic | 25.0% |
| ! | ATGCACTACTATAAAAGATA+AGG | + | chr3.3:93254641-93254660 | None:intergenic | 25.0% |
| ! | ATTCTTCATACTTTGTTGAA+TGG | - | chr3.3:93256383-93256402 | MS.gene69396:CDS | 25.0% |
| ! | CTCTATTGATATCAAAGATT+AGG | - | chr3.3:93255725-93255744 | MS.gene69396:intron | 25.0% |
| ! | GAAAAAAATCTGAATCAAAC+GGG | + | chr3.3:93254747-93254766 | None:intergenic | 25.0% |
| ! | GGAAAAAAATCTGAATCAAA+CGG | + | chr3.3:93254748-93254767 | None:intergenic | 25.0% |
| ! | TATATTTCTTGGATCTACAT+TGG | + | chr3.3:93255311-93255330 | None:intergenic | 25.0% |
| ! | TCATTCTGAGTACAAAATAT+AGG | + | chr3.3:93254454-93254473 | None:intergenic | 25.0% |
| ! | TCATTTCTAAGTGTTTGTTT+AGG | - | chr3.3:93254808-93254827 | MS.gene69396:intron | 25.0% |
| ! | TGATCTTTATGTTAGATTTG+TGG | - | chr3.3:93255593-93255612 | MS.gene69396:intron | 25.0% |
| ! | TGCCAAAAGAAAAATAATAC+CGG | + | chr3.3:93255155-93255174 | None:intergenic | 25.0% |
| ! | TTAAATAAAACATACCGACA+TGG | - | chr3.3:93254710-93254729 | MS.gene69396:CDS | 25.0% |
| ! | TTGATATGTCAGATATGATA+CGG | - | chr3.3:93254522-93254541 | MS.gene69396:CDS | 25.0% |
| ! | TTTGTAATATGTCACAGAAT+TGG | - | chr3.3:93255535-93255554 | MS.gene69396:intron | 25.0% |
| !! | AGAGGATCTAATTCAATTTT+TGG | - | chr3.3:93254357-93254376 | MS.gene69396:CDS | 25.0% |
| !! | GAGGATCTAATTCAATTTTT+GGG | - | chr3.3:93254358-93254377 | MS.gene69396:CDS | 25.0% |
| !!! | TTTTAAGAAAGTAGACTGAA+GGG | - | chr3.3:93255418-93255437 | MS.gene69396:intron | 25.0% |
| !!! | TTTTTAAGAAAGTAGACTGA+AGG | - | chr3.3:93255417-93255436 | MS.gene69396:intron | 25.0% |
| ACAGATAGTGTAGCATTATA+TGG | + | chr3.3:93255826-93255845 | None:intergenic | 30.0% | |
| AGACAACCTTTGATTAATTG+AGG | + | chr3.3:93255974-93255993 | None:intergenic | 30.0% | |
| AGAGAGTAACATGAATGATT+TGG | - | chr3.3:93256606-93256625 | MS.gene69396:CDS | 30.0% | |
| ATTGATATCAAAGATTAGGG+AGG | - | chr3.3:93255729-93255748 | MS.gene69396:intron | 30.0% | |
| CACTACTATAAAAGATAAGG+TGG | + | chr3.3:93254638-93254657 | None:intergenic | 30.0% | |
| CAGAGGTTAATGATACATAA+AGG | - | chr3.3:93254275-93254294 | MS.gene69396:CDS | 30.0% | |
| CTCAATTGTGATTAATGTCT+TGG | - | chr3.3:93254155-93254174 | MS.gene69396:CDS | 30.0% | |
| GAAATGATACTCAATTGGAA+AGG | - | chr3.3:93253850-93253869 | MS.gene69396:CDS | 30.0% | |
| GAAGATGATTATGAAGAAGA+AGG | - | chr3.3:93256670-93256689 | MS.gene69396:CDS | 30.0% | |
| TACTTCAATTACTATACTGC+AGG | + | chr3.3:93254308-93254327 | None:intergenic | 30.0% | |
| TCAGTACCTCAATTAATCAA+AGG | - | chr3.3:93255965-93255984 | MS.gene69396:intron | 30.0% | |
| ! | GAAACATGATGATGATTGAA+AGG | - | chr3.3:93254599-93254618 | MS.gene69396:CDS | 30.0% |
| ! | TACATTGGTTATTCTACAGA+TGG | + | chr3.3:93255296-93255315 | None:intergenic | 30.0% |
| !! | GACCGGTATTATTTTTCTTT+TGG | - | chr3.3:93255150-93255169 | MS.gene69396:intron | 30.0% |
| !!! | CGTGCCATGATTTTTTTTTT+TGG | + | chr3.3:93255184-93255203 | None:intergenic | 30.0% |
| AAAGTAAGCATCATTCTGTC+TGG | + | chr3.3:93255760-93255779 | None:intergenic | 35.0% | |
| AACTGGGCAAACAATAGAAT+GGG | - | chr3.3:93255485-93255504 | MS.gene69396:intron | 35.0% | |
| AATCGTCACGATTTCAATCA+TGG | + | chr3.3:93254255-93254274 | None:intergenic | 35.0% | |
| AATTCAGGAGATGTTTAGGA+GGG | - | chr3.3:93256492-93256511 | MS.gene69396:CDS | 35.0% | |
| ACACTAGACTTCACATTGTT+GGG | + | chr3.3:93256412-93256431 | None:intergenic | 35.0% | |
| ACATCTTCAAATTCTTGGGT+GGG | + | chr3.3:93256444-93256463 | None:intergenic | 35.0% | |
| ACCAAATTGGATCCAAATTC+TGG | - | chr3.3:93253769-93253788 | MS.gene69396:CDS | 35.0% | |
| ACCATAAAAAAGTGAAGACG+AGG | + | chr3.3:93256157-93256176 | None:intergenic | 35.0% | |
| ACTGGAAAATATGTAAGCGA+AGG | - | chr3.3:93253825-93253844 | MS.gene69396:CDS | 35.0% | |
| AGAAAATGCAGATGAGTGTA+TGG | - | chr3.3:93255858-93255877 | MS.gene69396:intron | 35.0% | |
| AGGTGGAAATGATACTCAAT+TGG | - | chr3.3:93253845-93253864 | MS.gene69396:CDS | 35.0% | |
| AGTTGAGTTCCCAATAAAAG+TGG | + | chr3.3:93256470-93256489 | None:intergenic | 35.0% | |
| ATTCTATTGTTTGCCCAGTT+AGG | + | chr3.3:93255485-93255504 | None:intergenic | 35.0% | |
| ATTGCTTGTAGTCACTGAAA+TGG | - | chr3.3:93255102-93255121 | MS.gene69396:intron | 35.0% | |
| CACTTTATGACATTTGCTTC+AGG | - | chr3.3:93255896-93255915 | MS.gene69396:intron | 35.0% | |
| CCAAATTGGATCCAAATTCT+GGG | - | chr3.3:93253770-93253789 | MS.gene69396:CDS | 35.0% | |
| CCAATGTTTGTCAAAATGGT+TGG | + | chr3.3:93255231-93255250 | None:intergenic | 35.0% | |
| CCATAAAAAAGTGAAGACGA+GGG | + | chr3.3:93256156-93256175 | None:intergenic | 35.0% | |
| CTCATTGTGTAATTGCAGTT+GGG | - | chr3.3:93256020-93256039 | MS.gene69396:intron | 35.0% | |
| CTTCAATTCAGGAGATGTTT+AGG | - | chr3.3:93256488-93256507 | MS.gene69396:CDS | 35.0% | |
| GAAAAATAATACCGGTCTGT+CGG | + | chr3.3:93255147-93255166 | None:intergenic | 35.0% | |
| GACGACATCTTCAAATTCTT+GGG | + | chr3.3:93256448-93256467 | None:intergenic | 35.0% | |
| GTGTATTACAATGAAGCTTC+TGG | - | chr3.3:93253879-93253898 | MS.gene69396:CDS | 35.0% | |
| TAACTGGGCAAACAATAGAA+TGG | - | chr3.3:93255484-93255503 | MS.gene69396:intron | 35.0% | |
| TATTACAATGAAGCTTCTGG+TGG | - | chr3.3:93253882-93253901 | MS.gene69396:CDS | 35.0% | |
| TCATAGTTGCAGAAATCAGA+TGG | + | chr3.3:93256054-93256073 | None:intergenic | 35.0% | |
| TCATTGTGTAATTGCAGTTG+GGG | - | chr3.3:93256021-93256040 | MS.gene69396:intron | 35.0% | |
| TGATTATGAAGAAGAAGGTG+AGG | - | chr3.3:93256675-93256694 | MS.gene69396:CDS | 35.0% | |
| TTCTATTGTTTGCCCAGTTA+GGG | + | chr3.3:93255484-93255503 | None:intergenic | 35.0% | |
| TTGCTTGTAGTCACTGAAAT+GGG | - | chr3.3:93255103-93255122 | MS.gene69396:intron | 35.0% | |
| ! | GATTTGTTCATCAACCTCTT+TGG | + | chr3.3:93256344-93256363 | None:intergenic | 35.0% |
| ! | TCGCTTACATATTTTCCAGT+TGG | + | chr3.3:93253825-93253844 | None:intergenic | 35.0% |
| !! | AAGATGTCGTCCACTTTTAT+TGG | - | chr3.3:93256457-93256476 | MS.gene69396:CDS | 35.0% |
| !! | AATCTGGTGCTGGTAATAAT+TGG | - | chr3.3:93254015-93254034 | MS.gene69396:CDS | 35.0% |
| !! | AGATGTCGTCCACTTTTATT+GGG | - | chr3.3:93256458-93256477 | MS.gene69396:CDS | 35.0% |
| !! | ATCTGGTGCTGGTAATAATT+GGG | - | chr3.3:93254016-93254035 | MS.gene69396:CDS | 35.0% |
| !! | CCAACCATTTTGACAAACAT+TGG | - | chr3.3:93255228-93255247 | MS.gene69396:intron | 35.0% |
| !! | CCTTTTTGCATTGGTATACT+GGG | - | chr3.3:93256551-93256570 | MS.gene69396:CDS | 35.0% |
| !! | CTTTTTGCATTGGTATACTG+GGG | - | chr3.3:93256552-93256571 | MS.gene69396:CDS | 35.0% |
| !! | TTGAGGTACTGAAAAAGAAG+AGG | + | chr3.3:93255957-93255976 | None:intergenic | 35.0% |
| !!! | CGTCTTCACTTTTTTATGGT+TGG | - | chr3.3:93256157-93256176 | MS.gene69396:intron | 35.0% |
| AAAAAGTGAAGACGAGGGAA+TGG | + | chr3.3:93256151-93256170 | None:intergenic | 40.0% | |
| AAAAGTGAAGACGAGGGAAT+GGG | + | chr3.3:93256150-93256169 | None:intergenic | 40.0% | |
| AAGAGGTGATACTTACAGCT+AGG | + | chr3.3:93255940-93255959 | None:intergenic | 40.0% | |
| AATGGATGAGATGGAGTTCA+CGG | - | chr3.3:93256579-93256598 | MS.gene69396:CDS | 40.0% | |
| AATTGGATCCAAATTCTGGG+AGG | - | chr3.3:93253773-93253792 | MS.gene69396:CDS | 40.0% | |
| AATTTCGTGTTCGGACAATC+TGG | - | chr3.3:93253999-93254018 | MS.gene69396:CDS | 40.0% | |
| ACAACTGTGTCAGATACCTT+TGG | + | chr3.3:93255799-93255818 | None:intergenic | 40.0% | |
| ACCAGATCTGATACTTTCCA+TGG | + | chr3.3:93253952-93253971 | None:intergenic | 40.0% | |
| ACCTTCGGTATAATGACCTT+TGG | + | chr3.3:93254042-93254061 | None:intergenic | 40.0% | |
| ACTGGGCAAACAATAGAATG+GGG | - | chr3.3:93255486-93255505 | MS.gene69396:intron | 40.0% | |
| AGAAGGTGAGGAACATTATG+AGG | - | chr3.3:93256687-93256706 | MS.gene69396:CDS | 40.0% | |
| AGAGGTGATACTTACAGCTA+GGG | + | chr3.3:93255939-93255958 | None:intergenic | 40.0% | |
| AGATCAGAGTTCAATTGACC+AGG | + | chr3.3:93256103-93256122 | None:intergenic | 40.0% | |
| AGATCCATAAGAACTGCTCT+AGG | + | chr3.3:93253918-93253937 | None:intergenic | 40.0% | |
| AGCAGCACACATCATATTCT+TGG | + | chr3.3:93256263-93256282 | None:intergenic | 40.0% | |
| AGCAGTTTACTGCAATGTTC+CGG | - | chr3.3:93256521-93256540 | MS.gene69396:CDS | 40.0% | |
| ATACCGACATGGAGTATACA+GGG | - | chr3.3:93254721-93254740 | MS.gene69396:CDS | 40.0% | |
| ATCCAATTTGGTTACCGCAT+TGG | + | chr3.3:93253761-93253780 | None:intergenic | 40.0% | |
| ATGATCAAGGTTCCCTAACT+GGG | - | chr3.3:93255469-93255488 | MS.gene69396:intron | 40.0% | |
| CAATTCAGGAGATGTTTAGG+AGG | - | chr3.3:93256491-93256510 | MS.gene69396:CDS | 40.0% | |
| CACACTAGACTTCACATTGT+TGG | + | chr3.3:93256413-93256432 | None:intergenic | 40.0% | |
| CCAACTGCAATTACACAATG+AGG | + | chr3.3:93256022-93256041 | None:intergenic | 40.0% | |
| CCCAGAATTTGGATCCAATT+TGG | + | chr3.3:93253773-93253792 | None:intergenic | 40.0% | |
| CCCAGTATACCAATGCAAAA+AGG | + | chr3.3:93256554-93256573 | None:intergenic | 40.0% | |
| CCTCATTGTGTAATTGCAGT+TGG | - | chr3.3:93256019-93256038 | MS.gene69396:intron | 40.0% | |
| CCTGACTTTCTGTAGATCTT+GGG | - | chr3.3:93254577-93254596 | MS.gene69396:CDS | 40.0% | |
| CGTCCTGATAATTTCGTGTT+CGG | - | chr3.3:93253990-93254009 | MS.gene69396:CDS | 40.0% | |
| CTATTGCATCCTGGTATTGT+TGG | + | chr3.3:93256642-93256661 | None:intergenic | 40.0% | |
| CTGATTTCTGCAACTATGAG+CGG | - | chr3.3:93256055-93256074 | MS.gene69396:intron | 40.0% | |
| GACATCTTCAAATTCTTGGG+TGG | + | chr3.3:93256445-93256464 | None:intergenic | 40.0% | |
| GAGAATTGTGATTGCTTGCA+AGG | - | chr3.3:93254107-93254126 | MS.gene69396:CDS | 40.0% | |
| GGAAAATATGTAAGCGAAGG+TGG | - | chr3.3:93253828-93253847 | MS.gene69396:CDS | 40.0% | |
| GGACGAAAGATCTTACCAAA+CGG | + | chr3.3:93253975-93253994 | None:intergenic | 40.0% | |
| GGACGACATCTTCAAATTCT+TGG | + | chr3.3:93256449-93256468 | None:intergenic | 40.0% | |
| GTCAATTGAACTCTGATCTC+AGG | - | chr3.3:93256104-93256123 | MS.gene69396:intron | 40.0% | |
| GTTACACAGAGCTATGATCA+AGG | - | chr3.3:93255456-93255475 | MS.gene69396:intron | 40.0% | |
| TATGATCAAGGTTCCCTAAC+TGG | - | chr3.3:93255468-93255487 | MS.gene69396:intron | 40.0% | |
| TCCTGACTTTCTGTAGATCT+TGG | - | chr3.3:93254576-93254595 | MS.gene69396:CDS | 40.0% | |
| TGATTTCTGCAACTATGAGC+GGG | - | chr3.3:93256056-93256075 | MS.gene69396:intron | 40.0% | |
| TGGGAACTCAACTTCAATTC+AGG | - | chr3.3:93256477-93256496 | MS.gene69396:CDS | 40.0% | |
| TGTCCGAACACGAAATTATC+AGG | + | chr3.3:93253996-93254015 | None:intergenic | 40.0% | |
| TGTTCCTAGAGCAGTTCTTA+TGG | - | chr3.3:93253911-93253930 | MS.gene69396:CDS | 40.0% | |
| TTGAAATCGTGACGATTCAG+AGG | - | chr3.3:93254258-93254277 | MS.gene69396:CDS | 40.0% | |
| TTGCAGATGCAGTCAAGTAT+CGG | + | chr3.3:93256300-93256319 | None:intergenic | 40.0% | |
| ! | ACATTTGTTGAGTCAGTTCC+GGG | + | chr3.3:93256234-93256253 | None:intergenic | 40.0% |
| ! | ATGATGATTGAAAGGCATGC+AGG | - | chr3.3:93254607-93254626 | MS.gene69396:CDS | 40.0% |
| ! | CACATTTGTTGAGTCAGTTC+CGG | + | chr3.3:93256235-93256254 | None:intergenic | 40.0% |
| ! | CATCTGCATTTTCTACCAGT+TGG | + | chr3.3:93255852-93255871 | None:intergenic | 40.0% |
| ! | GGAACTGACTCAACAAATGT+GGG | - | chr3.3:93256234-93256253 | MS.gene69396:intron | 40.0% |
| ! | GTGCACTCTGAAAATTCTAG+AGG | - | chr3.3:93254339-93254358 | MS.gene69396:CDS | 40.0% |
| ! | TGTCAGATACCTTTGGAGAT+GGG | + | chr3.3:93255792-93255811 | None:intergenic | 40.0% |
| !! | ACCATGGAAAGTATCAGATC+TGG | - | chr3.3:93253948-93253967 | MS.gene69396:CDS | 40.0% |
| !! | GCCTTTTTGCATTGGTATAC+TGG | - | chr3.3:93256550-93256569 | MS.gene69396:CDS | 40.0% |
| !!! | CCCTCGTCTTCACTTTTTTA+TGG | - | chr3.3:93256153-93256172 | MS.gene69396:intron | 40.0% |
| AAATAATACCGGTCTGTCGG+TGG | + | chr3.3:93255144-93255163 | None:intergenic | 45.0% | |
| AATGCAAAAAGGCTTTGCGC+CGG | + | chr3.3:93256543-93256562 | None:intergenic | 45.0% | |
| ACAATGAAGCTTCTGGTGGT+AGG | - | chr3.3:93253886-93253905 | MS.gene69396:CDS | 45.0% | |
| ACTGCATCTGCAATGTTCAG+AGG | - | chr3.3:93256307-93256326 | MS.gene69396:intron | 45.0% | |
| AGAGAGATCTTGCACGTTCA+AGG | - | chr3.3:93253732-93253751 | MS.gene69396:CDS | 45.0% | |
| AGGAAAGATGAGCACCAAAG+AGG | - | chr3.3:93256327-93256346 | MS.gene69396:CDS | 45.0% | |
| AGTATCAGATCTGGTCCGTT+TGG | - | chr3.3:93253957-93253976 | MS.gene69396:CDS | 45.0% | |
| ATACCAGGATGCAATAGCTG+AGG | - | chr3.3:93256645-93256664 | MS.gene69396:CDS | 45.0% | |
| CATACCGACATGGAGTATAC+AGG | - | chr3.3:93254720-93254739 | MS.gene69396:CDS | 45.0% | |
| CCCAAGATCTACAGAAAGTC+AGG | + | chr3.3:93254580-93254599 | None:intergenic | 45.0% | |
| CTGATACTTTCCATGGTACC+AGG | + | chr3.3:93253945-93253964 | None:intergenic | 45.0% | |
| CTGTCGGTGGTTGTAATCAT+AGG | + | chr3.3:93255131-93255150 | None:intergenic | 45.0% | |
| GAGGTGATACTTACAGCTAG+GGG | + | chr3.3:93255938-93255957 | None:intergenic | 45.0% | |
| GAGGTGATATGCGATGAACA+CGG | - | chr3.3:93253792-93253811 | MS.gene69396:CDS | 45.0% | |
| GATTTCTGCAACTATGAGCG+GGG | - | chr3.3:93256057-93256076 | MS.gene69396:intron | 45.0% | |
| GCATATCACCTCCCAGAATT+TGG | + | chr3.3:93253784-93253803 | None:intergenic | 45.0% | |
| GCCAAAGGTCATTATACCGA+AGG | - | chr3.3:93254038-93254057 | MS.gene69396:CDS | 45.0% | |
| GCTGGTAATAATTGGGCCAA+AGG | - | chr3.3:93254023-93254042 | MS.gene69396:CDS | 45.0% | |
| GTATGTATCCCTTACTGTCC+CGG | - | chr3.3:93256213-93256232 | MS.gene69396:intron | 45.0% | |
| GTCAATCAACTCAGCACCTT+CGG | + | chr3.3:93254057-93254076 | None:intergenic | 45.0% | |
| GTTCTTATGGATCTTGAGCC+TGG | - | chr3.3:93253924-93253943 | MS.gene69396:CDS | 45.0% | |
| TACACTATCTGTCCACCAAC+TGG | - | chr3.3:93255834-93255853 | MS.gene69396:intron | 45.0% | |
| ! | ACATGTTGTCTGAGGTTTCC+TGG | - | chr3.3:93256082-93256101 | MS.gene69396:intron | 45.0% |
| ! | AGCAGAGTACCAACAATACC+AGG | - | chr3.3:93256630-93256649 | MS.gene69396:CDS | 45.0% |
| ! | ATGATTGAAAGGCATGCAGG+AGG | - | chr3.3:93254610-93254629 | MS.gene69396:CDS | 45.0% |
| ! | CGGAACTGACTCAACAAATG+TGG | - | chr3.3:93256233-93256252 | MS.gene69396:intron | 45.0% |
| ! | CTCTGTTTTCCCATCTCCAA+AGG | - | chr3.3:93255780-93255799 | MS.gene69396:intron | 45.0% |
| ! | CTGCATTTTCTACCAGTTGG+TGG | + | chr3.3:93255849-93255868 | None:intergenic | 45.0% |
| ! | GTGTCAGATACCTTTGGAGA+TGG | + | chr3.3:93255793-93255812 | None:intergenic | 45.0% |
| ! | TGATTGAAAGGCATGCAGGA+GGG | - | chr3.3:93254611-93254630 | MS.gene69396:CDS | 45.0% |
| ! | TTGCATTGGTATACTGGGGA+GGG | - | chr3.3:93256556-93256575 | MS.gene69396:CDS | 45.0% |
| ! | TTTGCATTGGTATACTGGGG+AGG | - | chr3.3:93256555-93256574 | MS.gene69396:CDS | 45.0% |
| !! | TTTCAAGTTTGCCACTCCCT+TGG | - | chr3.3:93255676-93255695 | MS.gene69396:intron | 45.0% |
| AGTCAGTTCCGGGACAGTAA+GGG | + | chr3.3:93256224-93256243 | None:intergenic | 50.0% | |
| GAACTCTGATCTCAGGAAGC+TGG | - | chr3.3:93256111-93256130 | MS.gene69396:intron | 50.0% | |
| GAGATCTTGCACGTTCAAGG+TGG | - | chr3.3:93253735-93253754 | MS.gene69396:CDS | 50.0% | |
| GATTACAACCACCGACAGAC+CGG | - | chr3.3:93255133-93255152 | MS.gene69396:intron | 50.0% | |
| GGCCAATGCGGTAACCAAAT+TGG | - | chr3.3:93253756-93253775 | MS.gene69396:CDS | 50.0% | |
| TTGCACCTCTCACTTCTCGT+GGG | - | chr3.3:93256182-93256201 | MS.gene69396:intron | 50.0% | |
| TTGGTATACTGGGGAGGGAA+TGG | - | chr3.3:93256561-93256580 | MS.gene69396:CDS | 50.0% | |
| TTTGCACCTCTCACTTCTCG+TGG | - | chr3.3:93256181-93256200 | MS.gene69396:intron | 50.0% | |
| ! | GGCGCAAAGCCTTTTTGCAT+TGG | - | chr3.3:93256542-93256561 | MS.gene69396:CDS | 50.0% |
| !! | AGTCAAGTATCGGCCATGTC+GGG | + | chr3.3:93256290-93256309 | None:intergenic | 50.0% |
| !! | CAGTCAAGTATCGGCCATGT+CGG | + | chr3.3:93256291-93256310 | None:intergenic | 50.0% |
| !! | GAACACGGCATTGATCCAAC+TGG | - | chr3.3:93253807-93253826 | MS.gene69396:CDS | 50.0% |
| CAAGTTTGCCACTCCCTTGG+AGG | - | chr3.3:93255679-93255698 | MS.gene69396:intron | 55.0% | |
| CACGTTCAAGGTGGCCAATG+CGG | - | chr3.3:93253744-93253763 | MS.gene69396:CDS | 55.0% | |
| CCAGGATGCAATAGCTGAGG+AGG | - | chr3.3:93256648-93256667 | MS.gene69396:CDS | 55.0% | |
| CCTCCTCAGCTATTGCATCC+TGG | + | chr3.3:93256651-93256670 | None:intergenic | 55.0% | |
| GAGTCAGTTCCGGGACAGTA+AGG | + | chr3.3:93256225-93256244 | None:intergenic | 55.0% | |
| GCGGGGTTACATGTTGTCTG+AGG | - | chr3.3:93256074-93256093 | MS.gene69396:intron | 55.0% | |
| GGATCTTGAGCCTGGTACCA+TGG | - | chr3.3:93253932-93253951 | MS.gene69396:CDS | 55.0% | |
| GGATGAGATGGAGTTCACGG+AGG | - | chr3.3:93256582-93256601 | MS.gene69396:CDS | 55.0% | |
| GGGCCCTGTATACTCCATGT+CGG | + | chr3.3:93254727-93254746 | None:intergenic | 55.0% | |
| GTGTTCGGACAATCTGGTGC+TGG | - | chr3.3:93254005-93254024 | MS.gene69396:CDS | 55.0% | |
| TGAGACCCACGAGAAGTGAG+AGG | + | chr3.3:93256190-93256209 | None:intergenic | 55.0% | |
| TGGGGAGGGAATGGATGAGA+TGG | - | chr3.3:93256570-93256589 | MS.gene69396:CDS | 55.0% | |
| !! | GTCAAGTATCGGCCATGTCG+GGG | + | chr3.3:93256289-93256308 | None:intergenic | 55.0% |
| AGAACCCGTGCCTCCTCCAA+GGG | + | chr3.3:93255695-93255714 | None:intergenic | 60.0% | |
| GTTTGCCACTCCCTTGGAGG+AGG | - | chr3.3:93255682-93255701 | MS.gene69396:intron | 60.0% | |
| ! | TGTGCTGCTGATCCCCGACA+TGG | - | chr3.3:93256274-93256293 | MS.gene69396:intron | 60.0% |
| CAGAACCCGTGCCTCCTCCA+AGG | + | chr3.3:93255696-93255715 | None:intergenic | 65.0% | |
| CCACTCCCTTGGAGGAGGCA+CGG | - | chr3.3:93255687-93255706 | MS.gene69396:intron | 65.0% | |
| ! | AGGAGGCACGGGTTCTGGCA+TGG | - | chr3.3:93255699-93255718 | MS.gene69396:intron | 65.0% |
| ! | CACTCCCTTGGAGGAGGCAC+GGG | - | chr3.3:93255688-93255707 | MS.gene69396:intron | 65.0% |
| ! | CTTGGAGGAGGCACGGGTTC+TGG | - | chr3.3:93255694-93255713 | MS.gene69396:intron | 65.0% |
| ! | GGAGGCACGGGTTCTGGCAT+GGG | - | chr3.3:93255700-93255719 | MS.gene69396:intron | 65.0% |
| CCGTGCCTCCTCCAAGGGAG+TGG | + | chr3.3:93255690-93255709 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 93253729 | 93256717 | 93253729 | ID=MS.gene69396 |
| chr3.3 | mRNA | 93253729 | 93256717 | 93253729 | ID=MS.gene69396.t1;Parent=MS.gene69396 |
| chr3.3 | exon | 93256318 | 93256717 | 93256318 | ID=MS.gene69396.t1.exon1;Parent=MS.gene69396.t1 |
| chr3.3 | CDS | 93256318 | 93256717 | 93256318 | ID=cds.MS.gene69396.t1;Parent=MS.gene69396.t1 |
| chr3.3 | exon | 93254503 | 93254772 | 93254503 | ID=MS.gene69396.t1.exon2;Parent=MS.gene69396.t1 |
| chr3.3 | CDS | 93254503 | 93254772 | 93254503 | ID=cds.MS.gene69396.t1;Parent=MS.gene69396.t1 |
| chr3.3 | exon | 93253729 | 93254408 | 93253729 | ID=MS.gene69396.t1.exon3;Parent=MS.gene69396.t1 |
| chr3.3 | CDS | 93253729 | 93254408 | 93253729 | ID=cds.MS.gene69396.t1;Parent=MS.gene69396.t1 |
| Gene Sequence |
| Protein sequence |
