Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36449.t1 | XP_013457308.1 | 99.8 | 444 | 1 | 0 | 1 | 444 | 1 | 444 | 6.30E-261 | 909.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36449.t1 | Q6VAF7 | 97.2 | 432 | 12 | 0 | 1 | 432 | 1 | 432 | 5.4e-253 | 874.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36449.t1 | A0A072UNG6 | 99.8 | 444 | 1 | 0 | 1 | 444 | 1 | 444 | 4.6e-261 | 909.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36449 | MS.gene014419 | PPI |
| MS.gene36449 | MS.gene025926 | PPI |
| MS.gene36449 | MS.gene017695 | PPI |
| MS.gene36449 | MS.gene024462 | PPI |
| MS.gene050630 | MS.gene36449 | PPI |
| MS.gene028342 | MS.gene36449 | PPI |
| MS.gene36449 | MS.gene42253 | PPI |
| MS.gene36449 | MS.gene22813 | PPI |
| MS.gene36449 | MS.gene028342 | PPI |
| MS.gene36449 | MS.gene013972 | PPI |
| MS.gene36449 | MS.gene58838 | PPI |
| MS.gene36449 | MS.gene34503 | PPI |
| MS.gene064762 | MS.gene36449 | PPI |
| MS.gene36449 | MS.gene34573 | PPI |
| MS.gene49099 | MS.gene36449 | PPI |
| MS.gene35118 | MS.gene36449 | PPI |
| MS.gene69396 | MS.gene36449 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36449.t1 | MTR_4g094535 | 99.775 | 444 | 1 | 0 | 1 | 444 | 1 | 444 | 0.0 | 933 |
| MS.gene36449.t1 | MTR_2g031310 | 97.072 | 444 | 13 | 0 | 1 | 444 | 1 | 444 | 0.0 | 913 |
| MS.gene36449.t1 | MTR_1g101130 | 94.884 | 430 | 22 | 0 | 1 | 430 | 1 | 430 | 0.0 | 842 |
| MS.gene36449.t1 | MTR_4g017630 | 94.884 | 430 | 22 | 0 | 1 | 430 | 1 | 430 | 0.0 | 840 |
| MS.gene36449.t1 | MTR_4g019110 | 94.651 | 430 | 23 | 0 | 1 | 430 | 1 | 430 | 0.0 | 840 |
| MS.gene36449.t1 | MTR_7g089120 | 94.186 | 430 | 25 | 0 | 1 | 430 | 1 | 430 | 0.0 | 837 |
| MS.gene36449.t1 | MTR_4g019090 | 94.419 | 430 | 24 | 0 | 1 | 430 | 1 | 430 | 0.0 | 837 |
| MS.gene36449.t1 | MTR_3g113970 | 94.213 | 432 | 23 | 1 | 1 | 430 | 1 | 432 | 0.0 | 834 |
| MS.gene36449.t1 | MTR_8g098360 | 91.395 | 430 | 37 | 0 | 1 | 430 | 1 | 430 | 0.0 | 818 |
| MS.gene36449.t1 | MTR_8g107250 | 89.842 | 443 | 42 | 2 | 1 | 440 | 1 | 443 | 0.0 | 816 |
| MS.gene36449.t1 | MTR_8g085980 | 41.935 | 434 | 242 | 2 | 1 | 424 | 1 | 434 | 7.88e-126 | 372 |
| MS.gene36449.t1 | MTR_3g110720 | 41.935 | 434 | 242 | 2 | 1 | 424 | 1 | 434 | 1.54e-124 | 369 |
| MS.gene36449.t1 | MTR_4g097830 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 3.26e-124 | 368 |
| MS.gene36449.t1 | MTR_1g106005 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 5.91e-123 | 365 |
| MS.gene36449.t1 | MTR_7g085800 | 41.014 | 434 | 246 | 3 | 1 | 424 | 1 | 434 | 2.55e-122 | 363 |
| MS.gene36449.t1 | MTR_6g029190 | 40.541 | 444 | 253 | 2 | 1 | 433 | 1 | 444 | 2.66e-121 | 361 |
| MS.gene36449.t1 | MTR_2g041670 | 37.556 | 450 | 268 | 5 | 1 | 441 | 1 | 446 | 1.32e-99 | 306 |
| MS.gene36449.t1 | MTR_7g117050 | 34.932 | 438 | 268 | 7 | 2 | 423 | 3 | 439 | 2.95e-95 | 295 |
| MS.gene36449.t1 | MTR_2g041400 | 37.471 | 427 | 254 | 5 | 1 | 418 | 1 | 423 | 9.30e-95 | 292 |
| MS.gene36449.t1 | MTR_3g063410 | 33.784 | 148 | 90 | 1 | 256 | 395 | 30 | 177 | 2.61e-28 | 110 |
| MS.gene36449.t1 | MTR_3g063410 | 31.852 | 135 | 84 | 1 | 269 | 395 | 4 | 138 | 3.82e-21 | 90.1 |
| MS.gene36449.t1 | MTR_4g093670 | 82.759 | 29 | 5 | 0 | 377 | 405 | 1 | 29 | 8.35e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36449.t1 | AT5G23860 | 95.116 | 430 | 21 | 0 | 1 | 430 | 1 | 430 | 0.0 | 844 |
| MS.gene36449.t1 | AT5G23860 | 95.116 | 430 | 21 | 0 | 1 | 430 | 1 | 430 | 0.0 | 844 |
| MS.gene36449.t1 | AT5G62700 | 95.116 | 430 | 21 | 0 | 1 | 430 | 1 | 430 | 0.0 | 842 |
| MS.gene36449.t1 | AT5G62690 | 95.116 | 430 | 21 | 0 | 1 | 430 | 1 | 430 | 0.0 | 842 |
| MS.gene36449.t1 | AT5G44340 | 95.581 | 430 | 19 | 0 | 1 | 430 | 1 | 430 | 0.0 | 841 |
| MS.gene36449.t1 | AT2G29550 | 94.664 | 431 | 23 | 0 | 1 | 431 | 1 | 431 | 0.0 | 841 |
| MS.gene36449.t1 | AT1G75780 | 94.432 | 431 | 23 | 1 | 1 | 430 | 1 | 431 | 0.0 | 840 |
| MS.gene36449.t1 | AT1G20010 | 94.432 | 431 | 23 | 1 | 1 | 430 | 1 | 431 | 0.0 | 840 |
| MS.gene36449.t1 | AT4G20890 | 95.581 | 430 | 19 | 0 | 1 | 430 | 1 | 430 | 0.0 | 839 |
| MS.gene36449.t1 | AT5G12250 | 94.186 | 430 | 25 | 0 | 1 | 430 | 1 | 430 | 0.0 | 838 |
| MS.gene36449.t1 | AT5G19780 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 6.15e-125 | 370 |
| MS.gene36449.t1 | AT5G19770 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 6.15e-125 | 370 |
| MS.gene36449.t1 | AT1G64740 | 41.014 | 434 | 246 | 2 | 1 | 424 | 1 | 434 | 5.94e-124 | 368 |
| MS.gene36449.t1 | AT4G14960 | 42.009 | 438 | 241 | 3 | 1 | 428 | 1 | 435 | 1.85e-122 | 364 |
| MS.gene36449.t1 | AT1G04820 | 41.781 | 438 | 242 | 3 | 1 | 428 | 1 | 435 | 1.18e-121 | 362 |
| MS.gene36449.t1 | AT1G50010 | 41.781 | 438 | 242 | 3 | 1 | 428 | 1 | 435 | 1.18e-121 | 362 |
| MS.gene36449.t1 | AT4G14960 | 41.969 | 386 | 214 | 2 | 1 | 376 | 1 | 386 | 3.64e-104 | 316 |
| MS.gene36449.t1 | AT5G05620 | 34.703 | 438 | 269 | 7 | 2 | 423 | 3 | 439 | 2.57e-94 | 292 |
| MS.gene36449.t1 | AT3G61650 | 34.703 | 438 | 269 | 7 | 2 | 423 | 3 | 439 | 4.60e-94 | 292 |
Find 135 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCGTCTCCATTTCTTTA+TGG | 0.057272 | 4.1:+18771291 | MS.gene36449:CDS |
| GCAGATAACTTCCCAGAATT+TGG | 0.219215 | 4.1:-18769530 | None:intergenic |
| ACCTTTCGCCCAATTATTTC+CGG | 0.230782 | 4.1:-18769767 | None:intergenic |
| AGTCCGGTGCCGGAAATAAT+TGG | 0.234022 | 4.1:+18769758 | MS.gene36449:CDS |
| ACCAGATCGGAGCCAAATTC+TGG | 0.240214 | 4.1:+18769518 | MS.gene36449:CDS |
| TTGGGAGGTGGAACTGGTTC+TGG | 0.253925 | 4.1:+18770216 | MS.gene36449:CDS |
| CGTTCCACGCGCCGTGCTTA+TGG | 0.259332 | 4.1:+18769654 | MS.gene36449:CDS |
| CGCTTCTTATATCGAAGATT+AGG | 0.302722 | 4.1:+18770247 | MS.gene36449:CDS |
| CTCTTCGTTCCGGTCCGTTT+GGG | 0.318156 | 4.1:+18769701 | MS.gene36449:CDS |
| GTCTCCATTTCTTTATGGTT+GGG | 0.343623 | 4.1:+18771296 | MS.gene36449:CDS |
| CATCCATTCAAGAGATGTTC+AGG | 0.347098 | 4.1:+18771626 | MS.gene36449:CDS |
| TCTCTTCGTTCCGGTCCGTT+TGG | 0.350339 | 4.1:+18769700 | MS.gene36449:CDS |
| TGCTGATGAATGCATGGTTT+TGG | 0.356158 | 4.1:+18770386 | MS.gene36449:CDS |
| ATTTCAAGTGTGTCATTCAT+TGG | 0.357158 | 4.1:+18770197 | MS.gene36449:CDS |
| CGTCTCCATTTCTTTATGGT+TGG | 0.360293 | 4.1:+18771295 | MS.gene36449:CDS |
| CACATCTGCTGAGTCAATTC+AGG | 0.373294 | 4.1:-18771370 | None:intergenic |
| CAGTAGCATCCTGGTATTGC+TGG | 0.374586 | 4.1:-18771777 | None:intergenic |
| GCTTCTTATATCGAAGATTA+GGG | 0.388998 | 4.1:+18770248 | MS.gene36449:CDS |
| ACTTGTTGTCTACGTTTCCC+TGG | 0.394853 | 4.1:+18771220 | MS.gene36449:CDS |
| CATTCATTGGGAGGTGGAAC+TGG | 0.395787 | 4.1:+18770210 | MS.gene36449:CDS |
| ACGCTAGACTTGACGTTGTT+GGG | 0.397421 | 4.1:-18771547 | None:intergenic |
| ACCATGGATTCTCTTCGTTC+CGG | 0.400630 | 4.1:+18769691 | MS.gene36449:CDS |
| CGCATTGCCCGCCTTGGATG+TGG | 0.406173 | 4.1:-18769492 | None:intergenic |
| ATCAATCAACTCAGCGCCTT+CGG | 0.406415 | 4.1:-18769797 | None:intergenic |
| CCCAGAATTTGGCTCCGATC+TGG | 0.417231 | 4.1:-18769519 | None:intergenic |
| GGTGGAACTGGTTCTGGAAT+GGG | 0.420584 | 4.1:+18770222 | MS.gene36449:CDS |
| GAAGATTAGGGAAGAGTATC+CGG | 0.429040 | 4.1:+18770260 | MS.gene36449:CDS |
| TTCTGTGTTTCCTTCACCTA+AGG | 0.432433 | 4.1:+18770302 | MS.gene36449:CDS |
| AAGTTGGCATCCACTTTCAT+TGG | 0.434327 | 4.1:+18771595 | MS.gene36449:CDS |
| CACGCTAGACTTGACGTTGT+TGG | 0.439244 | 4.1:-18771548 | None:intergenic |
| TTTCAAGTGTGTCATTCATT+GGG | 0.439707 | 4.1:+18770198 | MS.gene36449:CDS |
| TAGCAGAAATGAGGTGGTTA+AGG | 0.446319 | 4.1:-18771183 | None:intergenic |
| AGATCAGAGTTCAGCTGCCC+AGG | 0.446604 | 4.1:-18771238 | None:intergenic |
| GGCGCAAGGCTTTCTTGCAT+TGG | 0.449590 | 4.1:+18771680 | MS.gene36449:CDS |
| GGAGACGAGGGAATGGGATA+AGG | 0.450931 | 4.1:-18771279 | None:intergenic |
| TGAGTTGATTGATTCCGTTT+TGG | 0.451285 | 4.1:+18769807 | MS.gene36449:CDS |
| GTCCGGTGCCGGAAATAATT+GGG | 0.454869 | 4.1:+18769759 | MS.gene36449:CDS |
| CAAACCCAACCATAAAGAAA+TGG | 0.456807 | 4.1:-18771300 | None:intergenic |
| GGTTACCGCATTGCCCGCCT+TGG | 0.462995 | 4.1:-18769498 | None:intergenic |
| CGAAGAGAATCCATGGTTCC+AGG | 0.464000 | 4.1:-18769685 | None:intergenic |
| GAGTAACATGAATGATTTAG+TGG | 0.471366 | 4.1:+18771747 | MS.gene36449:CDS |
| CGCCCAATTATTTCCGGCAC+CGG | 0.472241 | 4.1:-18769761 | None:intergenic |
| CCAGATCGGAGCCAAATTCT+GGG | 0.474009 | 4.1:+18769519 | MS.gene36449:CDS |
| CTGGGATCCTCTTGATGTCA+AGG | 0.475658 | 4.1:-18771326 | None:intergenic |
| TCTCCTGAACATCTCTTGAA+TGG | 0.476561 | 4.1:-18771629 | None:intergenic |
| TGCTGATGAGGAAGAGTATG+AGG | 0.478765 | 4.1:+18771798 | MS.gene36449:CDS |
| GATGCCAACTTAAGTCCCTT+TGG | 0.482604 | 4.1:-18771583 | None:intergenic |
| CATCTGCTCGTCCACCTCCT+TGG | 0.482638 | 4.1:-18771479 | None:intergenic |
| GTGCTTATGGATCTTGAACC+TGG | 0.487563 | 4.1:+18769667 | MS.gene36449:CDS |
| CACAGCTATGTTTAGGCGCA+AGG | 0.489129 | 4.1:+18771666 | MS.gene36449:CDS |
| CTTGTTGTCTACGTTTCCCT+GGG | 0.489205 | 4.1:+18771221 | MS.gene36449:CDS |
| CAGACAAGTTACGGTACTGC+TGG | 0.489207 | 4.1:-18771345 | None:intergenic |
| TGGTGAGGGAATGGATGAAA+TGG | 0.491207 | 4.1:+18771708 | MS.gene36449:CDS |
| AGAAATGGAGACGAGGGAAT+GGG | 0.491250 | 4.1:-18771285 | None:intergenic |
| GCTTTCTTGCATTGGTACAC+TGG | 0.499379 | 4.1:+18771688 | MS.gene36449:CDS |
| ACAGAAAGCGTTGCATTGTA+AGG | 0.500877 | 4.1:-18770345 | None:intergenic |
| AAGAAATGGAGACGAGGGAA+TGG | 0.501107 | 4.1:-18771286 | None:intergenic |
| GAGGAGGACGAAGAGGAGAT+TGG | 0.504946 | 4.1:+18771817 | MS.gene36449:CDS |
| AGGTGGAACTGGTTCTGGAA+TGG | 0.505865 | 4.1:+18770221 | MS.gene36449:CDS |
| ACCACCAAAGGGACTTAAGT+TGG | 0.517790 | 4.1:+18771579 | MS.gene36449:CDS |
| TGACCGAAAACGAAGTTATC+CGG | 0.518707 | 4.1:-18769736 | None:intergenic |
| CCTCATCAGCAGTAGCATCC+TGG | 0.518800 | 4.1:-18771786 | None:intergenic |
| GGTCGAAAGATCTGCCCAAA+CGG | 0.522770 | 4.1:-18769715 | None:intergenic |
| AATGTCTATTACAATGAAGC+TGG | 0.524418 | 4.1:+18769619 | MS.gene36449:CDS |
| GGATCTTGAACCTGGAACCA+TGG | 0.525143 | 4.1:+18769675 | MS.gene36449:CDS |
| ACTCTTCATACTTTGTTGAG+TGG | 0.525271 | 4.1:+18771521 | MS.gene36449:CDS |
| TTGCATTGGTACACTGGTGA+GGG | 0.526145 | 4.1:+18771694 | MS.gene36449:CDS |
| CTCATTTCTGCTACCATGAG+TGG | 0.528073 | 4.1:+18771193 | MS.gene36449:CDS |
| ATTCAGGCACAGACAAGTTA+CGG | 0.528087 | 4.1:-18771354 | None:intergenic |
| GTCAAATAACGACCGTGGCG+TGG | 0.528804 | 4.1:-18771424 | None:intergenic |
| ACAACTGTATCAGACACCTT+AGG | 0.530444 | 4.1:-18770318 | None:intergenic |
| TTGGTACACTGGTGAGGGAA+TGG | 0.531429 | 4.1:+18771699 | MS.gene36449:CDS |
| AGAGTATGAGGAGGACGAAG+AGG | 0.534706 | 4.1:+18771810 | MS.gene36449:CDS |
| GTATTGTCCGGTGGAATCGA+TGG | 0.537569 | 4.1:-18769563 | None:intergenic |
| TTTCCTCACAACATCCAAAA+CGG | 0.540847 | 4.1:-18769821 | None:intergenic |
| GAGAATTGTGATTGCTTGCA+AGG | 0.543252 | 4.1:+18769850 | MS.gene36449:CDS |
| AGCAGTTCACAGCTATGTTT+AGG | 0.544065 | 4.1:+18771659 | MS.gene36449:CDS |
| GGCAGAGTACCAGCAATACC+AGG | 0.544880 | 4.1:+18771768 | MS.gene36449:CDS |
| CTGAATTGACTCAGCAGATG+TGG | 0.548224 | 4.1:+18771371 | MS.gene36449:CDS |
| GTGTGGCAAGCTTCAATGTA+CGG | 0.548302 | 4.1:-18770437 | None:intergenic |
| TGGGATCCTCTTGATGTCAA+GGG | 0.552806 | 4.1:-18771325 | None:intergenic |
| AACGTCAACATCATACGATC+CGG | 0.553866 | 4.1:-18770279 | None:intergenic |
| CTTGCATTGGTACACTGGTG+AGG | 0.554328 | 4.1:+18771693 | MS.gene36449:CDS |
| CCAGGATGCTACTGCTGATG+AGG | 0.555022 | 4.1:+18771786 | MS.gene36449:CDS |
| AAATCCTCCACATCCAAGGC+GGG | 0.555066 | 4.1:+18769485 | MS.gene36449:CDS |
| CAAGTGTGTCATTCATTGGG+AGG | 0.556985 | 4.1:+18770201 | MS.gene36449:CDS |
| TAAGATGAGCACCAAGGAGG+TGG | 0.560512 | 4.1:+18771468 | MS.gene36449:CDS |
| TATTACAATGAAGCTGGTGG+TGG | 0.563542 | 4.1:+18769625 | MS.gene36449:CDS |
| TGTTGAATTGCCAATGAAAG+TGG | 0.564438 | 4.1:-18771605 | None:intergenic |
| AAAGATCTGCCCAAACGGAC+CGG | 0.568671 | 4.1:-18769710 | None:intergenic |
| GTGTGTGATATACCACCAAA+GGG | 0.569448 | 4.1:+18771568 | MS.gene36449:CDS |
| GATACGTTCAAGCTGAAGAT+CGG | 0.570363 | 4.1:-18769596 | None:intergenic |
| GGAATCGCCATTGTATTGTC+CGG | 0.571660 | 4.1:-18769575 | None:intergenic |
| GCCAACTTAAGTCCCTTTGG+TGG | 0.573973 | 4.1:-18771580 | None:intergenic |
| TTTGGATGTTGTGAGGAAAG+AGG | 0.581804 | 4.1:+18769825 | MS.gene36449:CDS |
| CACTCATGGTAGCAGAAATG+AGG | 0.582821 | 4.1:-18771192 | None:intergenic |
| GTGTGTCATTCATTGGGAGG+TGG | 0.583553 | 4.1:+18770204 | MS.gene36449:CDS |
| GCCGGAAATAATTGGGCGAA+AGG | 0.584081 | 4.1:+18769766 | MS.gene36449:CDS |
| GGGCAATGCGGTAACCAGAT+CGG | 0.585645 | 4.1:+18769505 | MS.gene36449:CDS |
| ATTGCCCGCCTTGGATGTGG+AGG | 0.585862 | 4.1:-18769489 | None:intergenic |
| TGAAAATGCTGATGAATGCA+TGG | 0.590764 | 4.1:+18770380 | MS.gene36449:CDS |
| TTTGCACCCTTGACATCAAG+AGG | 0.593193 | 4.1:+18771319 | MS.gene36449:CDS |
| AGAGAAATCCTCCACATCCA+AGG | 0.593831 | 4.1:+18769481 | MS.gene36449:CDS |
| AGATCCATAAGCACGGCGCG+TGG | 0.594405 | 4.1:-18769658 | None:intergenic |
| ACAACAAGTAACTCCACTCA+TGG | 0.597206 | 4.1:-18771206 | None:intergenic |
| CGTGTGTGATATACCACCAA+AGG | 0.597625 | 4.1:+18771567 | MS.gene36449:CDS |
| ACAATGAAGCTGGTGGTGGA+AGG | 0.601429 | 4.1:+18769629 | MS.gene36449:CDS |
| GTATCAGACACCTTAGGTGA+AGG | 0.604768 | 4.1:-18770312 | None:intergenic |
| ACCGGAACGAAGAGAATCCA+TGG | 0.604786 | 4.1:-18769692 | None:intergenic |
| GATCAGAGTTCAGCTGCCCA+GGG | 0.605765 | 4.1:-18771237 | None:intergenic |
| GATTCCACCGGACAATACAA+TGG | 0.609785 | 4.1:+18769568 | MS.gene36449:CDS |
| GTTTGGGCAGATCTTTCGAC+CGG | 0.610286 | 4.1:+18769717 | MS.gene36449:CDS |
| CCATAAAGAAATGGAGACGA+GGG | 0.610559 | 4.1:-18771291 | None:intergenic |
| AGACAAGTTACGGTACTGCT+GGG | 0.611318 | 4.1:-18771344 | None:intergenic |
| CACATCCAAGGCGGGCAATG+CGG | 0.623370 | 4.1:+18769493 | MS.gene36449:CDS |
| TAAGGTGTCTGATACAGTTG+TGG | 0.624348 | 4.1:+18770320 | MS.gene36449:CDS |
| ATCGCCATTGTATTGTCCGG+TGG | 0.632031 | 4.1:-18769572 | None:intergenic |
| ACTGCTTCAGCAATGTTCCG+TGG | 0.632259 | 4.1:+18771445 | MS.gene36449:CDS |
| GCGAAAGGTCATTACACCGA+AGG | 0.636978 | 4.1:+18769781 | MS.gene36449:CDS |
| GAACACGCCATCGATTCCAC+CGG | 0.641355 | 4.1:+18769556 | MS.gene36449:CDS |
| GAAGAGGAGATTGGTGCTTG+AGG | 0.646494 | 4.1:+18771826 | MS.gene36449:CDS |
| GAGAAACCTACAAGTTGGTG+TGG | 0.655099 | 4.1:-18770454 | None:intergenic |
| TGCGCTGCAGATCCACGCCA+CGG | 0.655282 | 4.1:+18771412 | MS.gene36449:CDS |
| ACCATAAAGAAATGGAGACG+AGG | 0.658939 | 4.1:-18771292 | None:intergenic |
| TCATGGTAGCAGAAATGAGG+TGG | 0.661184 | 4.1:-18771189 | None:intergenic |
| TGAATTGACTCAGCAGATGT+GGG | 0.666761 | 4.1:+18771372 | MS.gene36449:CDS |
| AGGTTCAAGATCCATAAGCA+CGG | 0.668081 | 4.1:-18769665 | None:intergenic |
| CCTTGGTGCTCATCTTACCA+CGG | 0.683046 | 4.1:-18771462 | None:intergenic |
| TGATGAGGAAGAGTATGAGG+AGG | 0.687688 | 4.1:+18771801 | MS.gene36449:CDS |
| GAAATCCTCCACATCCAAGG+CGG | 0.690316 | 4.1:+18769484 | MS.gene36449:CDS |
| GTCTATTACAATGAAGCTGG+TGG | 0.693558 | 4.1:+18769622 | MS.gene36449:CDS |
| CCGTGGTAAGATGAGCACCA+AGG | 0.721405 | 4.1:+18771462 | MS.gene36449:CDS |
| AAGCAGTCAAATAACGACCG+TGG | 0.722335 | 4.1:-18771429 | None:intergenic |
| TGGTAAGATGAGCACCAAGG+AGG | 0.726300 | 4.1:+18771465 | MS.gene36449:CDS |
| GGATGAAATGGAGTTCACTG+AGG | 0.800296 | 4.1:+18771720 | MS.gene36449:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAAAATGGAACATA+CGG | - | chr4.1:18771137-18771156 | None:intergenic | 15.0% |
| !! | AATGAAACGTTAATAATAAT+TGG | - | chr4.1:18769903-18769922 | None:intergenic | 15.0% |
| !! | CATTTACAACAAATTAAATT+AGG | + | chr4.1:18770961-18770980 | MS.gene36449:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | - | chr4.1:18770045-18770064 | None:intergenic | 15.0% |
| !! | AATTAGGATTATAATCATCA+TGG | + | chr4.1:18770977-18770996 | MS.gene36449:intron | 20.0% |
| !! | TTAGATGATTAGATAATGAT+TGG | + | chr4.1:18770595-18770614 | MS.gene36449:intron | 20.0% |
| !!! | TTATATGTTTTTATTGCAGT+TGG | + | chr4.1:18771157-18771176 | MS.gene36449:intron | 20.0% |
| ! | ATTATCTAGAGATAAAGTGT+TGG | + | chr4.1:18770898-18770917 | MS.gene36449:intron | 25.0% |
| ! | ATTCTAGTAGGTTCAATTAT+AGG | + | chr4.1:18771010-18771029 | MS.gene36449:intron | 25.0% |
| ! | CAGAATGGAATATAATAGAA+TGG | + | chr4.1:18770659-18770678 | MS.gene36449:intron | 25.0% |
| ! | GTGAAATTCAAACAGAATAA+AGG | - | chr4.1:18770483-18770502 | None:intergenic | 25.0% |
| ! | GTTGAAATTCTGTAATCATT+AGG | + | chr4.1:18771070-18771089 | MS.gene36449:intron | 25.0% |
| ! | TTAGATAATGATTGGCAAAT+AGG | + | chr4.1:18770603-18770622 | MS.gene36449:intron | 25.0% |
| !! | TCTGTAATCATTAGGTTTTT+GGG | + | chr4.1:18771078-18771097 | MS.gene36449:intron | 25.0% |
| !! | TTATCTAGAGATAAAGTGTT+GGG | + | chr4.1:18770899-18770918 | MS.gene36449:intron | 25.0% |
| !! | TTCTGTAATCATTAGGTTTT+TGG | + | chr4.1:18771077-18771096 | MS.gene36449:intron | 25.0% |
| AAGATGGCATTTAAAGAGAA+CGG | + | chr4.1:18770769-18770788 | MS.gene36449:intron | 30.0% | |
| AATGTCTATTACAATGAAGC+TGG | + | chr4.1:18769619-18769638 | MS.gene36449:CDS | 30.0% | |
| ACCATCAACAAGATAGTTAT+TGG | - | chr4.1:18770831-18770850 | None:intergenic | 30.0% | |
| AGAGAAACATAAAGTGAAAG+TGG | + | chr4.1:18770727-18770746 | MS.gene36449:intron | 30.0% | |
| ATTATAATCATCATGGTGGT+GGG | + | chr4.1:18770984-18771003 | MS.gene36449:intron | 30.0% | |
| ATTTGGTATGCTTGAAAAGA+TGG | + | chr4.1:18770753-18770772 | MS.gene36449:intron | 30.0% | |
| GAATATAATAGAATGGACCA+GGG | + | chr4.1:18770666-18770685 | MS.gene36449:intron | 30.0% | |
| GAGTAACATGAATGATTTAG+TGG | + | chr4.1:18771747-18771766 | MS.gene36449:CDS | 30.0% | |
| GCTTCTTATATCGAAGATTA+GGG | + | chr4.1:18770248-18770267 | MS.gene36449:CDS | 30.0% | |
| TAAAGTGAAAGTGGTACATT+TGG | + | chr4.1:18770736-18770755 | MS.gene36449:intron | 30.0% | |
| TAGGATTATAATCATCATGG+TGG | + | chr4.1:18770980-18770999 | MS.gene36449:intron | 30.0% | |
| ! | AGTGTTGGGTTAATTAATGA+TGG | + | chr4.1:18770913-18770932 | MS.gene36449:intron | 30.0% |
| ! | ATTTCAAGTGTGTCATTCAT+TGG | + | chr4.1:18770197-18770216 | MS.gene36449:CDS | 30.0% |
| ! | TTATGATATCCTGGCAATTT+TGG | + | chr4.1:18770523-18770542 | MS.gene36449:intron | 30.0% |
| ! | TTTCAAGTGTGTCATTCATT+GGG | + | chr4.1:18770198-18770217 | MS.gene36449:CDS | 30.0% |
| ACTCTTCATACTTTGTTGAG+TGG | + | chr4.1:18771521-18771540 | MS.gene36449:CDS | 35.0% | |
| CAAACCCAACCATAAAGAAA+TGG | - | chr4.1:18771303-18771322 | None:intergenic | 35.0% | |
| CAATCAAAACCAAAATTGCC+AGG | - | chr4.1:18770535-18770554 | None:intergenic | 35.0% | |
| CGCTTCTTATATCGAAGATT+AGG | + | chr4.1:18770247-18770266 | MS.gene36449:CDS | 35.0% | |
| GAAGTTTGTAATGTGTGAAC+AGG | + | chr4.1:18770174-18770193 | MS.gene36449:intron | 35.0% | |
| GATTATAATCATCATGGTGG+TGG | + | chr4.1:18770983-18771002 | MS.gene36449:intron | 35.0% | |
| GCCAATAACTATCTTGTTGA+TGG | + | chr4.1:18770827-18770846 | MS.gene36449:intron | 35.0% | |
| GGAATATAATAGAATGGACC+AGG | + | chr4.1:18770665-18770684 | MS.gene36449:intron | 35.0% | |
| GTCTCCATTTCTTTATGGTT+GGG | + | chr4.1:18771296-18771315 | MS.gene36449:CDS | 35.0% | |
| GTTATGAGTGAGATCAAACA+AGG | - | chr4.1:18771036-18771055 | None:intergenic | 35.0% | |
| TAATGATTGGCAAATAGGAG+AGG | + | chr4.1:18770608-18770627 | MS.gene36449:intron | 35.0% | |
| TCAAATACAGTTATCTACCC+TGG | - | chr4.1:18770686-18770705 | None:intergenic | 35.0% | |
| TGAAAATGCTGATGAATGCA+TGG | + | chr4.1:18770380-18770399 | MS.gene36449:CDS | 35.0% | |
| TGTTGAATTGCCAATGAAAG+TGG | - | chr4.1:18771608-18771627 | None:intergenic | 35.0% | |
| TTTCCTCACAACATCCAAAA+CGG | - | chr4.1:18769824-18769843 | None:intergenic | 35.0% | |
| ! | CTGTGCATTTTATGATATCC+TGG | + | chr4.1:18770514-18770533 | MS.gene36449:intron | 35.0% |
| ! | GATGTCTTTTGTAGACAGAA+TGG | + | chr4.1:18770644-18770663 | MS.gene36449:intron | 35.0% |
| ! | GTAATCTCATGTGTTGATGT+CGG | + | chr4.1:18770076-18770095 | MS.gene36449:intron | 35.0% |
| !! | AACTATCTTGTTGATGGTGT+TGG | + | chr4.1:18770833-18770852 | MS.gene36449:intron | 35.0% |
| !! | ACTATCTTGTTGATGGTGTT+GGG | + | chr4.1:18770834-18770853 | MS.gene36449:intron | 35.0% |
| !!! | TGAGTTGATTGATTCCGTTT+TGG | + | chr4.1:18769807-18769826 | MS.gene36449:CDS | 35.0% |
| AACGTCAACATCATACGATC+CGG | - | chr4.1:18770282-18770301 | None:intergenic | 40.0% | |
| AAGTTGGCATCCACTTTCAT+TGG | + | chr4.1:18771595-18771614 | MS.gene36449:CDS | 40.0% | |
| ACAACAAGTAACTCCACTCA+TGG | - | chr4.1:18771209-18771228 | None:intergenic | 40.0% | |
| ACAACTGTATCAGACACCTT+AGG | - | chr4.1:18770321-18770340 | None:intergenic | 40.0% | |
| ACCATAAAGAAATGGAGACG+AGG | - | chr4.1:18771295-18771314 | None:intergenic | 40.0% | |
| ACCTTTCGCCCAATTATTTC+CGG | - | chr4.1:18769770-18769789 | None:intergenic | 40.0% | |
| AGCAGTTCACAGCTATGTTT+AGG | + | chr4.1:18771659-18771678 | MS.gene36449:CDS | 40.0% | |
| AGGTTCAAGATCCATAAGCA+CGG | - | chr4.1:18769668-18769687 | None:intergenic | 40.0% | |
| ATTCAGGCACAGACAAGTTA+CGG | - | chr4.1:18771357-18771376 | None:intergenic | 40.0% | |
| CATCCATTCAAGAGATGTTC+AGG | + | chr4.1:18771626-18771645 | MS.gene36449:CDS | 40.0% | |
| CCATAAAGAAATGGAGACGA+GGG | - | chr4.1:18771294-18771313 | None:intergenic | 40.0% | |
| CGTCTCCATTTCTTTATGGT+TGG | + | chr4.1:18771295-18771314 | MS.gene36449:CDS | 40.0% | |
| GAGAATTGTGATTGCTTGCA+AGG | + | chr4.1:18769850-18769869 | MS.gene36449:CDS | 40.0% | |
| GATACGTTCAAGCTGAAGAT+CGG | - | chr4.1:18769599-18769618 | None:intergenic | 40.0% | |
| GCAGATAACTTCCCAGAATT+TGG | - | chr4.1:18769533-18769552 | None:intergenic | 40.0% | |
| GTCTATTACAATGAAGCTGG+TGG | + | chr4.1:18769622-18769641 | MS.gene36449:CDS | 40.0% | |
| GTGTGTGATATACCACCAAA+GGG | + | chr4.1:18771568-18771587 | MS.gene36449:CDS | 40.0% | |
| TAGCAGAAATGAGGTGGTTA+AGG | - | chr4.1:18771186-18771205 | None:intergenic | 40.0% | |
| TATTACAATGAAGCTGGTGG+TGG | + | chr4.1:18769625-18769644 | MS.gene36449:CDS | 40.0% | |
| TCTCCTGAACATCTCTTGAA+TGG | - | chr4.1:18771632-18771651 | None:intergenic | 40.0% | |
| TGACCGAAAACGAAGTTATC+CGG | - | chr4.1:18769739-18769758 | None:intergenic | 40.0% | |
| TTCTGTGTTTCCTTCACCTA+AGG | + | chr4.1:18770302-18770321 | MS.gene36449:CDS | 40.0% | |
| TTGATCTCACTCATAACTGC+TGG | + | chr4.1:18771039-18771058 | MS.gene36449:intron | 40.0% | |
| TTTGGATGTTGTGAGGAAAG+AGG | + | chr4.1:18769825-18769844 | MS.gene36449:CDS | 40.0% | |
| ! | TAAGGTGTCTGATACAGTTG+TGG | + | chr4.1:18770320-18770339 | MS.gene36449:CDS | 40.0% |
| ! | TCACTCATAACTGCTGGTTA+TGG | + | chr4.1:18771045-18771064 | MS.gene36449:intron | 40.0% |
| ! | TGAATTGACTCAGCAGATGT+GGG | + | chr4.1:18771372-18771391 | MS.gene36449:CDS | 40.0% |
| ! | TGCTGATGAATGCATGGTTT+TGG | + | chr4.1:18770386-18770405 | MS.gene36449:CDS | 40.0% |
| !! | ACAGAAAGCGTTGCATTGTA+AGG | - | chr4.1:18770348-18770367 | None:intergenic | 40.0% |
| !! | ATTCCGTTTTGGATGTTGTG+AGG | + | chr4.1:18769818-18769837 | MS.gene36449:CDS | 40.0% |
| !! | GAAGATTAGGGAAGAGTATC+CGG | + | chr4.1:18770260-18770279 | MS.gene36449:CDS | 40.0% |
| !! | GTTGTTTCTGCTAGTGTTGA+TGG | + | chr4.1:18770859-18770878 | MS.gene36449:intron | 40.0% |
| !!! | ATGCATGGTTTTGGACAATG+AGG | + | chr4.1:18770395-18770414 | MS.gene36449:CDS | 40.0% |
| AAGAAATGGAGACGAGGGAA+TGG | - | chr4.1:18771289-18771308 | None:intergenic | 45.0% | |
| AAGCAGTCAAATAACGACCG+TGG | - | chr4.1:18771432-18771451 | None:intergenic | 45.0% | |
| ACCACCAAAGGGACTTAAGT+TGG | + | chr4.1:18771579-18771598 | MS.gene36449:CDS | 45.0% | |
| ACCATGGATTCTCTTCGTTC+CGG | + | chr4.1:18769691-18769710 | MS.gene36449:CDS | 45.0% | |
| ACGCTAGACTTGACGTTGTT+GGG | - | chr4.1:18771550-18771569 | None:intergenic | 45.0% | |
| AGAAATGGAGACGAGGGAAT+GGG | - | chr4.1:18771288-18771307 | None:intergenic | 45.0% | |
| AGACAAGTTACGGTACTGCT+GGG | - | chr4.1:18771347-18771366 | None:intergenic | 45.0% | |
| AGAGAAATCCTCCACATCCA+AGG | + | chr4.1:18769481-18769500 | MS.gene36449:CDS | 45.0% | |
| AGAGAACGGATGAAAGCAGA+TGG | + | chr4.1:18770783-18770802 | MS.gene36449:intron | 45.0% | |
| ATCAATCAACTCAGCGCCTT+CGG | - | chr4.1:18769800-18769819 | None:intergenic | 45.0% | |
| CACATCTGCTGAGTCAATTC+AGG | - | chr4.1:18771373-18771392 | None:intergenic | 45.0% | |
| CACTCATGGTAGCAGAAATG+AGG | - | chr4.1:18771195-18771214 | None:intergenic | 45.0% | |
| CCCTCGTCTCCATTTCTTTA+TGG | + | chr4.1:18771291-18771310 | MS.gene36449:CDS | 45.0% | |
| CGTGTGTGATATACCACCAA+AGG | + | chr4.1:18771567-18771586 | MS.gene36449:CDS | 45.0% | |
| CTCATTTCTGCTACCATGAG+TGG | + | chr4.1:18771193-18771212 | MS.gene36449:CDS | 45.0% | |
| GATGCCAACTTAAGTCCCTT+TGG | - | chr4.1:18771586-18771605 | None:intergenic | 45.0% | |
| GATTCCACCGGACAATACAA+TGG | + | chr4.1:18769568-18769587 | MS.gene36449:CDS | 45.0% | |
| GGAACGAGAAACCTACAAGT+TGG | - | chr4.1:18770462-18770481 | None:intergenic | 45.0% | |
| GGAATCGCCATTGTATTGTC+CGG | - | chr4.1:18769578-18769597 | None:intergenic | 45.0% | |
| GGATGAAATGGAGTTCACTG+AGG | + | chr4.1:18771720-18771739 | MS.gene36449:CDS | 45.0% | |
| GTATCAGACACCTTAGGTGA+AGG | - | chr4.1:18770315-18770334 | None:intergenic | 45.0% | |
| GTGCTTATGGATCTTGAACC+TGG | + | chr4.1:18769667-18769686 | MS.gene36449:CDS | 45.0% | |
| GTGTGGCAAGCTTCAATGTA+CGG | - | chr4.1:18770440-18770459 | None:intergenic | 45.0% | |
| TCATGGTAGCAGAAATGAGG+TGG | - | chr4.1:18771192-18771211 | None:intergenic | 45.0% | |
| TGGGATCCTCTTGATGTCAA+GGG | - | chr4.1:18771328-18771347 | None:intergenic | 45.0% | |
| TGGTGAGGGAATGGATGAAA+TGG | + | chr4.1:18771708-18771727 | MS.gene36449:CDS | 45.0% | |
| TTTGCACCCTTGACATCAAG+AGG | + | chr4.1:18771319-18771338 | MS.gene36449:CDS | 45.0% | |
| ! | AACTTCGTTTTCGGTCAGTC+CGG | + | chr4.1:18769742-18769761 | MS.gene36449:CDS | 45.0% |
| ! | CAAGTGTGTCATTCATTGGG+AGG | + | chr4.1:18770201-18770220 | MS.gene36449:CDS | 45.0% |
| ! | CGACCGGATAACTTCGTTTT+CGG | + | chr4.1:18769733-18769752 | MS.gene36449:CDS | 45.0% |
| ! | CTGAATTGACTCAGCAGATG+TGG | + | chr4.1:18771371-18771390 | MS.gene36449:CDS | 45.0% |
| ! | CTTGTTGTCTACGTTTCCCT+GGG | + | chr4.1:18771221-18771240 | MS.gene36449:CDS | 45.0% |
| ! | GCTTTCTTGCATTGGTACAC+TGG | + | chr4.1:18771688-18771707 | MS.gene36449:CDS | 45.0% |
| ! | TGATGAGGAAGAGTATGAGG+AGG | + | chr4.1:18771801-18771820 | MS.gene36449:CDS | 45.0% |
| ! | TGCTGATGAGGAAGAGTATG+AGG | + | chr4.1:18771798-18771817 | MS.gene36449:CDS | 45.0% |
| ! | TTGCATTGGTACACTGGTGA+GGG | + | chr4.1:18771694-18771713 | MS.gene36449:CDS | 45.0% |
| !! | ACTTGTTGTCTACGTTTCCC+TGG | + | chr4.1:18771220-18771239 | MS.gene36449:CDS | 45.0% |
| !! | ATAATCATCATGGTGGTGGG+AGG | + | chr4.1:18770987-18771006 | MS.gene36449:intron | 45.0% |
| !! | GAGAAACCTACAAGTTGGTG+TGG | - | chr4.1:18770457-18770476 | None:intergenic | 45.0% |
| !! | AACATATAAAAAATTAAAAA+TGG | - | chr4.1:18771146-18771165 | None:intergenic | 5.0% |
| AAAGATCTGCCCAAACGGAC+CGG | - | chr4.1:18769713-18769732 | None:intergenic | 50.0% | |
| AAATCCTCCACATCCAAGGC+GGG | + | chr4.1:18769485-18769504 | MS.gene36449:CDS | 50.0% | |
| ACCAGATCGGAGCCAAATTC+TGG | + | chr4.1:18769518-18769537 | MS.gene36449:CDS | 50.0% | |
| ACCGGAACGAAGAGAATCCA+TGG | - | chr4.1:18769695-18769714 | None:intergenic | 50.0% | |
| ACTGCTTCAGCAATGTTCCG+TGG | + | chr4.1:18771445-18771464 | MS.gene36449:CDS | 50.0% | |
| AGAGTATGAGGAGGACGAAG+AGG | + | chr4.1:18771810-18771829 | MS.gene36449:CDS | 50.0% | |
| AGCTTGCCACACCAACTTGT+AGG | + | chr4.1:18770448-18770467 | MS.gene36449:intron | 50.0% | |
| ATCGCCATTGTATTGTCCGG+TGG | - | chr4.1:18769575-18769594 | None:intergenic | 50.0% | |
| CACAGCTATGTTTAGGCGCA+AGG | + | chr4.1:18771666-18771685 | MS.gene36449:CDS | 50.0% | |
| CACGCTAGACTTGACGTTGT+TGG | - | chr4.1:18771551-18771570 | None:intergenic | 50.0% | |
| CAGACAAGTTACGGTACTGC+TGG | - | chr4.1:18771348-18771367 | None:intergenic | 50.0% | |
| CAGTAGCATCCTGGTATTGC+TGG | - | chr4.1:18771780-18771799 | None:intergenic | 50.0% | |
| CATTCATTGGGAGGTGGAAC+TGG | + | chr4.1:18770210-18770229 | MS.gene36449:CDS | 50.0% | |
| CCAGATCGGAGCCAAATTCT+GGG | + | chr4.1:18769519-18769538 | MS.gene36449:CDS | 50.0% | |
| CGAAGAGAATCCATGGTTCC+AGG | - | chr4.1:18769688-18769707 | None:intergenic | 50.0% | |
| CTGGGATCCTCTTGATGTCA+AGG | - | chr4.1:18771329-18771348 | None:intergenic | 50.0% | |
| GAAATCCTCCACATCCAAGG+CGG | + | chr4.1:18769484-18769503 | MS.gene36449:CDS | 50.0% | |
| GCCAACTTAAGTCCCTTTGG+TGG | - | chr4.1:18771583-18771602 | None:intergenic | 50.0% | |
| GCCGGAAATAATTGGGCGAA+AGG | + | chr4.1:18769766-18769785 | MS.gene36449:CDS | 50.0% | |
| GCGAAAGGTCATTACACCGA+AGG | + | chr4.1:18769781-18769800 | MS.gene36449:CDS | 50.0% | |
| GGATCTTGAACCTGGAACCA+TGG | + | chr4.1:18769675-18769694 | MS.gene36449:CDS | 50.0% | |
| GGTCGAAAGATCTGCCCAAA+CGG | - | chr4.1:18769718-18769737 | None:intergenic | 50.0% | |
| GTATTGTCCGGTGGAATCGA+TGG | - | chr4.1:18769566-18769585 | None:intergenic | 50.0% | |
| GTTTGGGCAGATCTTTCGAC+CGG | + | chr4.1:18769717-18769736 | MS.gene36449:CDS | 50.0% | |
| TAAGATGAGCACCAAGGAGG+TGG | + | chr4.1:18771468-18771487 | MS.gene36449:CDS | 50.0% | |
| TCTGACACGACTTGAACACG+TGG | + | chr4.1:18769948-18769967 | MS.gene36449:intron | 50.0% | |
| TGGTAAGATGAGCACCAAGG+AGG | + | chr4.1:18771465-18771484 | MS.gene36449:CDS | 50.0% | |
| TTGGTACACTGGTGAGGGAA+TGG | + | chr4.1:18771699-18771718 | MS.gene36449:CDS | 50.0% | |
| ! | AGTCCGGTGCCGGAAATAAT+TGG | + | chr4.1:18769758-18769777 | MS.gene36449:CDS | 50.0% |
| ! | CTTGCATTGGTACACTGGTG+AGG | + | chr4.1:18771693-18771712 | MS.gene36449:CDS | 50.0% |
| ! | GTCCGGTGCCGGAAATAATT+GGG | + | chr4.1:18769759-18769778 | MS.gene36449:CDS | 50.0% |
| ! | GTGTGTCATTCATTGGGAGG+TGG | + | chr4.1:18770204-18770223 | MS.gene36449:CDS | 50.0% |
| !! | ACAATGAAGCTGGTGGTGGA+AGG | + | chr4.1:18769629-18769648 | MS.gene36449:CDS | 50.0% |
| !! | AGGTGGAACTGGTTCTGGAA+TGG | + | chr4.1:18770221-18770240 | MS.gene36449:CDS | 50.0% |
| !! | CCTTGGTGCTCATCTTACCA+CGG | - | chr4.1:18771465-18771484 | None:intergenic | 50.0% |
| !! | GCTAGTGTTGATGGCAATGC+TGG | + | chr4.1:18770868-18770887 | MS.gene36449:intron | 50.0% |
| !! | GGTGGAACTGGTTCTGGAAT+GGG | + | chr4.1:18770222-18770241 | MS.gene36449:CDS | 50.0% |
| AGATCAGAGTTCAGCTGCCC+AGG | - | chr4.1:18771241-18771260 | None:intergenic | 55.0% | |
| CCAGGATGCTACTGCTGATG+AGG | + | chr4.1:18771786-18771805 | MS.gene36449:CDS | 55.0% | |
| CCGTGGTAAGATGAGCACCA+AGG | + | chr4.1:18771462-18771481 | MS.gene36449:CDS | 55.0% | |
| CCTCATCAGCAGTAGCATCC+TGG | - | chr4.1:18771789-18771808 | None:intergenic | 55.0% | |
| CGCCCAATTATTTCCGGCAC+CGG | - | chr4.1:18769764-18769783 | None:intergenic | 55.0% | |
| CTCTTCGTTCCGGTCCGTTT+GGG | + | chr4.1:18769701-18769720 | MS.gene36449:CDS | 55.0% | |
| GAGGAGGACGAAGAGGAGAT+TGG | + | chr4.1:18771817-18771836 | MS.gene36449:CDS | 55.0% | |
| GATCAGAGTTCAGCTGCCCA+GGG | - | chr4.1:18771240-18771259 | None:intergenic | 55.0% | |
| GGAGACGAGGGAATGGGATA+AGG | - | chr4.1:18771282-18771301 | None:intergenic | 55.0% | |
| GGCGCAAGGCTTTCTTGCAT+TGG | + | chr4.1:18771680-18771699 | MS.gene36449:CDS | 55.0% | |
| GGGCAATGCGGTAACCAGAT+CGG | + | chr4.1:18769505-18769524 | MS.gene36449:CDS | 55.0% | |
| GTCAAATAACGACCGTGGCG+TGG | - | chr4.1:18771427-18771446 | None:intergenic | 55.0% | |
| TCTCTTCGTTCCGGTCCGTT+TGG | + | chr4.1:18769700-18769719 | MS.gene36449:CDS | 55.0% | |
| ! | CCCAGAATTTGGCTCCGATC+TGG | - | chr4.1:18769522-18769541 | None:intergenic | 55.0% |
| ! | GGCAGAGTACCAGCAATACC+AGG | + | chr4.1:18771768-18771787 | MS.gene36449:CDS | 55.0% |
| ! | TTGGGAGGTGGAACTGGTTC+TGG | + | chr4.1:18770216-18770235 | MS.gene36449:CDS | 55.0% |
| !! | GAACACGCCATCGATTCCAC+CGG | + | chr4.1:18769556-18769575 | MS.gene36449:CDS | 55.0% |
| !! | GGTGGTGGGAGGATTCTAGT+AGG | + | chr4.1:18770998-18771017 | MS.gene36449:intron | 55.0% |
| AGATCCATAAGCACGGCGCG+TGG | - | chr4.1:18769661-18769680 | None:intergenic | 60.0% | |
| AGCACCAACACCTCTGACCG+AGG | - | chr4.1:18770125-18770144 | None:intergenic | 60.0% | |
| ATTGCCCGCCTTGGATGTGG+AGG | - | chr4.1:18769492-18769511 | None:intergenic | 60.0% | |
| CACATCCAAGGCGGGCAATG+CGG | + | chr4.1:18769493-18769512 | MS.gene36449:CDS | 60.0% | |
| CATCTGCTCGTCCACCTCCT+TGG | - | chr4.1:18771482-18771501 | None:intergenic | 60.0% | |
| TCAGACACCAGACGCGTCCT+CGG | + | chr4.1:18770105-18770124 | MS.gene36449:intron | 60.0% | |
| ! | GTTTTCGGTCAGTCCGGTGC+CGG | + | chr4.1:18769748-18769767 | MS.gene36449:CDS | 60.0% |
| CGCATTGCCCGCCTTGGATG+TGG | - | chr4.1:18769495-18769514 | None:intergenic | 65.0% | |
| CGTTCCACGCGCCGTGCTTA+TGG | + | chr4.1:18769654-18769673 | MS.gene36449:CDS | 65.0% | |
| GGTTACCGCATTGCCCGCCT+TGG | - | chr4.1:18769501-18769520 | None:intergenic | 65.0% | |
| TGCGCTGCAGATCCACGCCA+CGG | + | chr4.1:18771412-18771431 | MS.gene36449:CDS | 65.0% | |
| ! | GCGTCCTCGGTCAGAGGTGT+TGG | + | chr4.1:18770118-18770137 | MS.gene36449:intron | 65.0% |
| CCAGACGCGTCCTCGGTCAG+AGG | + | chr4.1:18770112-18770131 | MS.gene36449:intron | 70.0% | |
| CCTCTGACCGAGGACGCGTC+TGG | - | chr4.1:18770115-18770134 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18769478 | 18771846 | 18769478 | ID=MS.gene36449 |
| chr4.1 | mRNA | 18769478 | 18771846 | 18769478 | ID=MS.gene36449.t1;Parent=MS.gene36449 |
| chr4.1 | exon | 18769478 | 18769871 | 18769478 | ID=MS.gene36449.t1.exon1;Parent=MS.gene36449.t1 |
| chr4.1 | CDS | 18769478 | 18769871 | 18769478 | ID=cds.MS.gene36449.t1;Parent=MS.gene36449.t1 |
| chr4.1 | exon | 18770196 | 18770465 | 18770196 | ID=MS.gene36449.t1.exon2;Parent=MS.gene36449.t1 |
| chr4.1 | CDS | 18770196 | 18770465 | 18770196 | ID=cds.MS.gene36449.t1;Parent=MS.gene36449.t1 |
| chr4.1 | exon | 18771176 | 18771846 | 18771176 | ID=MS.gene36449.t1.exon3;Parent=MS.gene36449.t1 |
| chr4.1 | CDS | 18771176 | 18771846 | 18771176 | ID=cds.MS.gene36449.t1;Parent=MS.gene36449.t1 |
| Gene Sequence |
| Protein sequence |
