AlfalfaGEDB | MS.gene58838

M. sativa cultivar XinJiangDaYe / MS.gene58838

KEGG: K07375
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005198 GO:0005200 GO:0005488 GO:0005525 GO:0005575 GO:0005874 GO:0007017 GO:0008150 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110165 GO:1901265 GO:1901363
PFAM: PF00091.28 PF03953.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58838.t1	XP_003624926.1	98.7	449	6	0	1	449	1	449	3.30E-257	897.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58838.t1	P29514	99.3	431	3	0	1	431	1	431	7.4e-258	890.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58838.t1	G7L5V0	98.7	449	6	0	1	449	1	449	2.4e-257	897.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049243	MS.gene58838	0.822484	2.31E-53	-1.69E-46
MS.gene050630	MS.gene58838	0.863408	2.54E-64	-1.69E-46
MS.gene050667	MS.gene58838	0.819325	1.23E-52	-1.69E-46
MS.gene051067	MS.gene58838	0.819721	1.00E-52	-1.69E-46
MS.gene051248	MS.gene58838	0.809278	2.05E-50	-1.69E-46
MS.gene052156	MS.gene58838	0.802599	5.20E-49	-1.69E-46
MS.gene052731	MS.gene58838	0.806992	6.28E-50	-1.69E-46
MS.gene053500	MS.gene58838	0.81485	1.25E-51	-1.69E-46
MS.gene056228	MS.gene58838	0.833725	4.52E-56	-1.69E-46
MS.gene056396	MS.gene58838	0.844898	5.68E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene014419	MS.gene58838	PPI
MS.gene014578	MS.gene58838	PPI
MS.gene028342	MS.gene58838	PPI
MS.gene050630	MS.gene58838	PPI
MS.gene064762	MS.gene58838	PPI
MS.gene23930	MS.gene58838	PPI
MS.gene34503	MS.gene58838	PPI
MS.gene35118	MS.gene58838	PPI
MS.gene36449	MS.gene58838	PPI
MS.gene40225	MS.gene58838	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene58838.t1	MTR_7g089120	99.109	449	4	0	1	449	1	449	940
MS.gene58838.t1	MTR_1g101130	97.209	430	12	0	1	430	1	430	856
MS.gene58838.t1	MTR_4g019090	96.512	430	15	0	1	430	1	430	853
MS.gene58838.t1	MTR_4g019110	95.814	430	18	0	1	430	1	430	848
MS.gene58838.t1	MTR_2g031310	95.349	430	20	0	1	430	1	430	845
MS.gene58838.t1	MTR_4g017630	94.186	430	25	0	1	430	1	430	837
MS.gene58838.t1	MTR_4g094535	93.953	430	26	0	1	430	1	430	834
MS.gene58838.t1	MTR_8g107250	91.461	445	36	2	1	443	1	445	833
MS.gene58838.t1	MTR_3g113970	93.519	432	26	1	1	430	1	432	832
MS.gene58838.t1	MTR_8g098360	92.326	430	33	0	1	430	1	430	823

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene58838.t1	AT5G12250	98.423	444	7	0	1	444	1	444	926
MS.gene58838.t1	AT5G62700	96.279	430	16	0	1	430	1	430	853
MS.gene58838.t1	AT5G62690	96.279	430	16	0	1	430	1	430	853
MS.gene58838.t1	AT5G23860	96.744	430	14	0	1	430	1	430	852
MS.gene58838.t1	AT5G23860	96.744	430	14	0	1	430	1	430	852
MS.gene58838.t1	AT2G29550	95.824	431	18	0	1	431	1	431	847
MS.gene58838.t1	AT1G75780	92.889	450	27	2	1	449	1	446	833
MS.gene58838.t1	AT1G20010	93.039	431	29	1	1	430	1	431	830
MS.gene58838.t1	AT5G44340	92.558	430	32	0	1	430	1	430	828
MS.gene58838.t1	AT4G20890	92.558	430	32	0	1	430	1	430	825

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Find 131 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGTCAACATCATCCTATC+AGG	0.441581	7.3:+20343517	None:intergenic
AACTTCGTCTTCGGTCAGTC+CGG	0.442188	7.3:-20343819	MS.gene58838:CDS
AAGAAGTGCAGACGAGGGAA+TGG	0.475598	7.3:+20342411	None:intergenic
AAGTCCATGAGGATGGCGCG+TGG	0.636612	7.3:+20343903	None:intergenic
AATTCAGGAAATGTTTAGGA+GGG	0.609115	7.3:-20342067	MS.gene58838:CDS
AATTTACTGCTATGTTTAGG+AGG	0.549323	7.3:-20342035	MS.gene58838:CDS
ACAACAGTATCAGAAACCTT+CGG	0.584973	7.3:+20343478	None:intergenic
ACAACGAAGCCTCCTGTGGA+AGG	0.594540	7.3:-20343932	MS.gene58838:CDS
ACAATGGACAGTGTTCGCAC+TGG	0.609664	7.3:-20343870	MS.gene58838:CDS
ACACTTGATTTAACATTGTT+TGG	0.235866	7.3:+20342150	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTTGATTCTGTTATGG+CGG	-	chr7.3:20342278-20342297	MS.gene58838:CDS	30.0%
AATTCAGGAAATGTTTAGGA+GGG	-	chr7.3:20343874-20343893	MS.gene58838:CDS	30.0%
AATTTACTGCTATGTTTAGG+AGG	-	chr7.3:20343906-20343925	MS.gene58838:CDS	30.0%
ACAGAAAGAGTAGCATTATA+AGG	+	chr7.3:20342493-20342512	None:intergenic	30.0%
AGAGAAATTCTTCATGTTCA+AGG	-	chr7.3:20341861-20341880	MS.gene58838:CDS	30.0%
AGCAATTTACTGCTATGTTT+AGG	-	chr7.3:20343903-20343922	MS.gene58838:CDS	30.0%
ATGTATTCAGTTTACTGATC+TGG	-	chr7.3:20343014-20343033	MS.gene58838:intron	30.0%
ATTAGTTAGATCAGACTTCT+TGG	-	chr7.3:20342721-20342740	MS.gene58838:intron	30.0%
TGGTGATTCTTAACTACTAA+TGG	-	chr7.3:20343234-20343253	MS.gene58838:intron	30.0%
ACAACAGTATCAGAAACCTT+CGG	+	chr7.3:20342466-20342485	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	20341858	20344105	20341858	ID=MS.gene58838
chr7.3	mRNA	20341858	20344105	20341858	ID=MS.gene58838.t1;Parent=MS.gene58838
chr7.3	exon	20343712	20344105	20343712	ID=MS.gene58838.t1.exon1;Parent=MS.gene58838.t1
chr7.3	CDS	20343712	20344105	20343712	ID=cds.MS.gene58838.t1;Parent=MS.gene58838.t1
chr7.3	exon	20343353	20343622	20343353	ID=MS.gene58838.t1.exon2;Parent=MS.gene58838.t1
chr7.3	CDS	20343353	20343622	20343353	ID=cds.MS.gene58838.t1;Parent=MS.gene58838.t1
chr7.3	exon	20341858	20342543	20341858	ID=MS.gene58838.t1.exon3;Parent=MS.gene58838.t1
chr7.3	CDS	20341858	20342543	20341858	ID=cds.MS.gene58838.t1;Parent=MS.gene58838.t1

Gene Sequence

>MS.gene58838

ATGAGAGAAATTCTTCATGTTCAAGGAGGACAATGCGGGAACCAGATCGGTTCAAAATTCTGGGAAGTAGTTTGCGACGAGCACGGCATAGATCCAACCGGAAGATACGTCGGAAACTCAGATCTACAACTTGAGCGCGTCAATGTTTACTACAACGAAGCCTCCTGTGGAAGGTTTGTTCCACGCGCCATCCTCATGGACTTGGAGCCTGGTACAATGGACAGTGTTCGCACTGGTCCTTACGGTCAGATCTTCCGTCCTGATAACTTCGTCTTCGGTCAGTCCGGTGCCGGTAACAATTGGGCGAAAGGACATTATACTGAAGGCGCTGAACTTATTGATTCAGTTCTCGATGTTGTTCGTAAAGAAGCTGAGAATTGTGATTGTCTTCAAGGTATAATCTATTGCTTGTGCTTGTGAAAATCTTGATTCTGTTATGGCGGTTACTGACTTTGTATTTTGTGATTTTGTGATTTTTTTTAGGGTTTCAGGTGTGTCATTCATTGGGAGGAGGAACGGGATCTGGAATGGGAACTTTGTTGATTTCGAAGATTAGAGAGGAATATCCTGATAGGATGATGTTGACGTTTTCGGTGTTTCCTTCACCGAAGGTTTCTGATACTGTTGTTGAGCCTTATAATGCTACTCTTTCTGTTCATCAGTTGGTAGAAAATGCTGATGAGTGTATGGTTCTTGATAATGAGGCGCTTTATGATATCTGCTTCAGGACTCTTAAATTGACTACTCCTAGCTGTGAGTATTTTTCTCTTTTGTCGCGATCTAGATCTCTTTTTCGTTGTTCATCACTAGGGGTAGATGAGTTACATGTTAATTGTTCGTTGATTTGTTTGATTTGATGCGCAATTAGTTAGATCAGACTTCTTGGTTAGTTGTAGTAATTATTGAATAGTGGAATTTGTTTTCTTAATGTGTACTTGTTTCAGTCAAATTAGTCAAATGATTTTCTTAATTTGCATTTGTTTAGTCAGATTAGTTTTCTATTTTGGAATTTGAATTAGTATTGAATGACATTGAGATATAGTACTTGTTGAGAAATTGATTTGACTGATTCTAGATGTTCAAGGAATTTTACTGCAAATACTATGATTTCCATTTTAATGTTATTATGTTTTACATGATTAATTTGACAATTTAGATGTATTCAGTTTACTGATCTGGTTAGTGGGCATTTAATTATAGTTATTATGCTATTACTGATCGCTTTTAATTAAACTTATATTTACACTTTGGGATCTAATTTCTAAATGCCTATTGCAATTGTTCAACGCTTGATAGTTGTTGATACGAATATGAATGCATCATGTCATGTGACTATGGTGCTTTGATGTTCATGATTCATTTTTCTGGTTCAATTATGGTGATTCTTAACTACTAATGGAAATTGTTTTCTCATTGAGCACTTTTCGGTCAAATTGCTTTCCTAAATTTAATCTGACTAATTTTTTTTGTTTGAATGAATTTGATTGTTCACAAATTGGGTAACTTAGTCCTGTAGTTGATGCTGTTTGCCATTACTGAAAATGTGTGATTGTTTGCTGCAGTTGGTGACTTGAACCACTTGATCTCAGCAACCATGAGTGGAGTGACTTGCTGTCTTCGTTTCCCTGGTCAACTCAACTCTGATCTCCGGAAACTGGCTGTGAATCTCATCCCATTCCCTCGTCTGCACTTCTTCATGGTCGGTTTTGCTCCTCTCACATCCCGTGGCTCTCAGCAATACCGTGCATTGACTGTTCCAGAACTCACCCAGCAGATGTGGGATTCCAAGAACATGATGTGTGCTGCTGATCCTAGGCATGGTCGCTACCTCACTGCTTCTGCCATGTTCAGGGGTAAGATGAGCACCAAAGAGGTGGATGAGCAAATGATAAATGTCCAGAACAAGAACTCTTCCTACTTTGTTGAGTGGATCCCAAACAATGTTAAATCAAGTGTTTGTGACATTGCTCCTCGAGGTCTCTCCATGGCCTCCACCTTTATTGGTAACTCAACCTCAATTCAGGAAATGTTTAGGAGGGTGAGCGAGCAATTTACTGCTATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACTGGTGAAGGCATGGATGAGATGGAATTCACAGAAGCTGAGAGCAACATGAATGACCTCGTGTCTGAGTACCAGCAGTACCAGGATGCCACTGCTGATGAAGAAGGAGAATATGAGGACGAAGAGGACGAGGAGCAAGAGCATGCTTATGAATAA

Protein sequence

>MS.gene58838.t1

MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRFVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEDEEQEHAYE