Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34573.t1 | XP_003592284.1 | 100 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 3.10E-263 | 917.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34573.t1 | P37392 | 97.8 | 447 | 9 | 1 | 1 | 447 | 1 | 446 | 7.9e-260 | 897.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34573.t1 | G7IAN2 | 100.0 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 2.2e-263 | 917.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene34573 | 0.802714 | 4.92E-49 | -1.69E-46 |
| MS.gene049298 | MS.gene34573 | 0.810103 | 1.36E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene34573 | 0.803587 | 3.25E-49 | -1.69E-46 |
| MS.gene050875 | MS.gene34573 | 0.813202 | 2.88E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene34573 | 0.829309 | 5.53E-55 | -1.69E-46 |
| MS.gene051914 | MS.gene34573 | 0.836533 | 8.85E-57 | -1.69E-46 |
| MS.gene052308 | MS.gene34573 | 0.852346 | 4.90E-61 | -1.69E-46 |
| MS.gene052367 | MS.gene34573 | 0.839319 | 1.70E-57 | -1.69E-46 |
| MS.gene053173 | MS.gene34573 | 0.886308 | 3.83E-72 | -1.69E-46 |
| MS.gene053283 | MS.gene34573 | 0.820946 | 5.24E-53 | -1.69E-46 |
| MS.gene053348 | MS.gene34573 | 0.860744 | 1.67E-63 | -1.69E-46 |
| MS.gene053416 | MS.gene34573 | 0.807168 | 5.77E-50 | -1.69E-46 |
| MS.gene053417 | MS.gene34573 | 0.806267 | 8.94E-50 | -1.69E-46 |
| MS.gene054551 | MS.gene34573 | 0.886559 | 3.08E-72 | -1.69E-46 |
| MS.gene054552 | MS.gene34573 | 0.813085 | 3.06E-51 | -1.69E-46 |
| MS.gene054593 | MS.gene34573 | 0.873875 | 1.05E-67 | -1.69E-46 |
| MS.gene054633 | MS.gene34573 | 0.837897 | 3.96E-57 | -1.69E-46 |
| MS.gene054662 | MS.gene34573 | 0.831629 | 1.50E-55 | -1.69E-46 |
| MS.gene054941 | MS.gene34573 | 0.81395 | 1.97E-51 | -1.69E-46 |
| MS.gene055308 | MS.gene34573 | 0.856065 | 4.14E-62 | -1.69E-46 |
| MS.gene055578 | MS.gene34573 | 0.864323 | 1.32E-64 | -1.69E-46 |
| MS.gene056041 | MS.gene34573 | 0.84966 | 2.80E-60 | -1.69E-46 |
| MS.gene05640 | MS.gene34573 | 0.862386 | 5.26E-64 | -1.69E-46 |
| MS.gene056526 | MS.gene34573 | 0.819808 | 9.56E-53 | -1.69E-46 |
| MS.gene056528 | MS.gene34573 | 0.823087 | 1.67E-53 | -1.69E-46 |
| MS.gene05652 | MS.gene34573 | 0.868295 | 7.26E-66 | -1.69E-46 |
| MS.gene05732 | MS.gene34573 | 0.853841 | 1.83E-61 | -1.69E-46 |
| MS.gene057367 | MS.gene34573 | 0.828693 | 7.80E-55 | -1.69E-46 |
| MS.gene057458 | MS.gene34573 | 0.820528 | 6.54E-53 | -1.69E-46 |
| MS.gene057669 | MS.gene34573 | 0.866382 | 2.97E-65 | -1.69E-46 |
| MS.gene058013 | MS.gene34573 | 0.821413 | 4.09E-53 | -1.69E-46 |
| MS.gene058128 | MS.gene34573 | 0.848108 | 7.56E-60 | -1.69E-46 |
| MS.gene058849 | MS.gene34573 | 0.813409 | 2.60E-51 | -1.69E-46 |
| MS.gene058853 | MS.gene34573 | 0.860938 | 1.46E-63 | -1.69E-46 |
| MS.gene05926 | MS.gene34573 | 0.818189 | 2.23E-52 | -1.69E-46 |
| MS.gene059616 | MS.gene34573 | 0.811209 | 7.85E-51 | -1.69E-46 |
| MS.gene060473 | MS.gene34573 | 0.838424 | 2.90E-57 | -1.69E-46 |
| MS.gene060565 | MS.gene34573 | 0.821708 | 3.50E-53 | -1.69E-46 |
| MS.gene06093 | MS.gene34573 | 0.873697 | 1.20E-67 | -1.69E-46 |
| MS.gene061099 | MS.gene34573 | 0.837436 | 5.20E-57 | -1.69E-46 |
| MS.gene061260 | MS.gene34573 | 0.870338 | 1.57E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene58838 | MS.gene34573 | PPI |
| MS.gene024462 | MS.gene34573 | PPI |
| MS.gene050630 | MS.gene34573 | PPI |
| MS.gene028342 | MS.gene34573 | PPI |
| MS.gene34573 | MS.gene017695 | PPI |
| MS.gene014419 | MS.gene34573 | PPI |
| MS.gene025926 | MS.gene34573 | PPI |
| MS.gene064762 | MS.gene34573 | PPI |
| MS.gene34573 | MS.gene22813 | PPI |
| MS.gene35118 | MS.gene34573 | PPI |
| MS.gene36449 | MS.gene34573 | PPI |
| MS.gene69396 | MS.gene34573 | PPI |
| MS.gene42253 | MS.gene34573 | PPI |
| MS.gene34573 | MS.gene013972 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34573.t1 | MTR_1g101130 | 100.000 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 0.0 | 946 |
| MS.gene34573.t1 | MTR_7g089120 | 96.413 | 446 | 15 | 1 | 1 | 446 | 1 | 445 | 0.0 | 905 |
| MS.gene34573.t1 | MTR_4g019090 | 97.674 | 430 | 10 | 0 | 1 | 430 | 1 | 430 | 0.0 | 863 |
| MS.gene34573.t1 | MTR_4g019110 | 97.209 | 430 | 12 | 0 | 1 | 430 | 1 | 430 | 0.0 | 857 |
| MS.gene34573.t1 | MTR_2g031310 | 96.047 | 430 | 17 | 0 | 1 | 430 | 1 | 430 | 0.0 | 850 |
| MS.gene34573.t1 | MTR_4g017630 | 95.814 | 430 | 18 | 0 | 1 | 430 | 1 | 430 | 0.0 | 847 |
| MS.gene34573.t1 | MTR_4g094535 | 95.116 | 430 | 21 | 0 | 1 | 430 | 1 | 430 | 0.0 | 843 |
| MS.gene34573.t1 | MTR_3g113970 | 93.287 | 432 | 27 | 1 | 1 | 430 | 1 | 432 | 0.0 | 830 |
| MS.gene34573.t1 | MTR_8g107250 | 91.422 | 443 | 37 | 1 | 1 | 442 | 1 | 443 | 0.0 | 827 |
| MS.gene34573.t1 | MTR_8g098360 | 91.628 | 430 | 36 | 0 | 1 | 430 | 1 | 430 | 0.0 | 818 |
| MS.gene34573.t1 | MTR_8g085980 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 5.91e-124 | 368 |
| MS.gene34573.t1 | MTR_3g110720 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 1.71e-123 | 367 |
| MS.gene34573.t1 | MTR_4g097830 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 6.15e-123 | 365 |
| MS.gene34573.t1 | MTR_1g106005 | 41.244 | 434 | 245 | 2 | 1 | 424 | 1 | 434 | 7.79e-122 | 362 |
| MS.gene34573.t1 | MTR_6g029190 | 40.402 | 448 | 256 | 2 | 1 | 437 | 1 | 448 | 1.04e-121 | 362 |
| MS.gene34573.t1 | MTR_7g085800 | 40.553 | 434 | 248 | 2 | 1 | 424 | 1 | 434 | 1.15e-121 | 362 |
| MS.gene34573.t1 | MTR_2g041670 | 36.807 | 451 | 272 | 4 | 1 | 442 | 1 | 447 | 1.07e-98 | 304 |
| MS.gene34573.t1 | MTR_7g117050 | 35.160 | 438 | 267 | 7 | 2 | 423 | 3 | 439 | 9.72e-97 | 299 |
| MS.gene34573.t1 | MTR_2g041400 | 37.002 | 427 | 256 | 4 | 1 | 418 | 1 | 423 | 8.14e-95 | 292 |
| MS.gene34573.t1 | MTR_3g063410 | 33.784 | 148 | 90 | 1 | 256 | 395 | 30 | 177 | 3.75e-28 | 110 |
| MS.gene34573.t1 | MTR_3g063410 | 31.852 | 135 | 84 | 1 | 269 | 395 | 4 | 138 | 3.98e-21 | 90.1 |
| MS.gene34573.t1 | MTR_4g093670 | 82.759 | 29 | 5 | 0 | 377 | 405 | 1 | 29 | 8.20e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34573.t1 | AT5G23860 | 98.218 | 449 | 7 | 1 | 1 | 448 | 1 | 449 | 0.0 | 927 |
| MS.gene34573.t1 | AT5G23860 | 98.218 | 449 | 7 | 1 | 1 | 448 | 1 | 449 | 0.0 | 927 |
| MS.gene34573.t1 | AT5G62700 | 97.105 | 449 | 11 | 2 | 1 | 448 | 1 | 448 | 0.0 | 915 |
| MS.gene34573.t1 | AT5G62690 | 97.105 | 449 | 11 | 2 | 1 | 448 | 1 | 448 | 0.0 | 915 |
| MS.gene34573.t1 | AT2G29550 | 96.752 | 431 | 14 | 0 | 1 | 431 | 1 | 431 | 0.0 | 855 |
| MS.gene34573.t1 | AT5G12250 | 96.977 | 430 | 13 | 0 | 1 | 430 | 1 | 430 | 0.0 | 854 |
| MS.gene34573.t1 | AT1G75780 | 94.200 | 431 | 24 | 1 | 1 | 430 | 1 | 431 | 0.0 | 838 |
| MS.gene34573.t1 | AT1G20010 | 93.735 | 431 | 26 | 1 | 1 | 430 | 1 | 431 | 0.0 | 835 |
| MS.gene34573.t1 | AT4G20890 | 93.488 | 430 | 28 | 0 | 1 | 430 | 1 | 430 | 0.0 | 829 |
| MS.gene34573.t1 | AT5G44340 | 92.558 | 430 | 32 | 0 | 1 | 430 | 1 | 430 | 0.0 | 823 |
| MS.gene34573.t1 | AT5G19780 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 3.80e-124 | 368 |
| MS.gene34573.t1 | AT5G19770 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 3.80e-124 | 368 |
| MS.gene34573.t1 | AT1G64740 | 41.014 | 434 | 246 | 2 | 1 | 424 | 1 | 434 | 1.29e-123 | 367 |
| MS.gene34573.t1 | AT4G14960 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 2.13e-122 | 364 |
| MS.gene34573.t1 | AT1G04820 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 1.45e-121 | 362 |
| MS.gene34573.t1 | AT1G50010 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 1.45e-121 | 362 |
| MS.gene34573.t1 | AT4G14960 | 41.710 | 386 | 215 | 2 | 1 | 376 | 1 | 386 | 9.13e-103 | 313 |
| MS.gene34573.t1 | AT3G61650 | 35.388 | 438 | 266 | 7 | 2 | 423 | 3 | 439 | 5.00e-97 | 300 |
| MS.gene34573.t1 | AT5G05620 | 35.388 | 438 | 266 | 7 | 2 | 423 | 3 | 439 | 5.17e-97 | 300 |
Find 132 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTGGAGTAGTGAGTTTA+AGG | 0.176825 | 1.3:+69391746 | None:intergenic |
| CCCTCGTTTGCATTTCTTCA+TGG | 0.183235 | 1.3:-69391479 | MS.gene34573:CDS |
| GCACACAACTTCCCAGAATT+TGG | 0.196817 | 1.3:+69393418 | None:intergenic |
| ACCAAATCGGAGCCAAATTC+TGG | 0.224594 | 1.3:-69393430 | MS.gene34573:CDS |
| GCTTTCTTGCATTGGTATAC+TGG | 0.248415 | 1.3:-69391082 | MS.gene34573:CDS |
| ACCTTTCGCCCAGTTGTTTC+CGG | 0.265804 | 1.3:+69393181 | None:intergenic |
| CGGCCTGATAACTTCGTCTT+TGG | 0.273503 | 1.3:-69393215 | MS.gene34573:CDS |
| CTTGGTGGTGGTACTGGTTC+TGG | 0.275474 | 1.3:-69391973 | MS.gene34573:CDS |
| TGGTAACTCCACATCTATTC+AGG | 0.284386 | 1.3:-69391155 | MS.gene34573:CDS |
| GAACTCAGATCTTCGCAAAT+TGG | 0.295990 | 1.3:-69391521 | MS.gene34573:CDS |
| CCCGCCAACTGGTCTTAAAA+TGG | 0.306035 | 1.3:-69391191 | MS.gene34573:CDS |
| AGATGAGGAGGAAGAAGTTC+AGG | 0.309205 | 1.3:-69390945 | MS.gene34573:CDS |
| CACTCCCTTGGTGGTGGTAC+TGG | 0.316198 | 1.3:-69391979 | MS.gene34573:CDS |
| CATCTATTCAGGAGATGTTT+AGG | 0.317382 | 1.3:-69391144 | MS.gene34573:CDS |
| CGCCCAGTTGTTTCCGGCAC+CGG | 0.324024 | 1.3:+69393187 | None:intergenic |
| CAGTAGCATCTTGGTATTGC+TGG | 0.336251 | 1.3:+69390993 | None:intergenic |
| GGATCTGGAGCCAGGGACTA+TGG | 0.340774 | 1.3:-69393273 | MS.gene34573:CDS |
| GACAGTGGATTTCACATTGT+TGG | 0.341115 | 1.3:+69391222 | None:intergenic |
| TCTTCGAATCCCACATCTGC+TGG | 0.346684 | 1.3:+69391389 | None:intergenic |
| GTTCTCATGGATCTGGAGCC+AGG | 0.354959 | 1.3:-69393281 | MS.gene34573:CDS |
| CCCAGAATTTGGCTCCGATT+TGG | 0.356984 | 1.3:+69393429 | None:intergenic |
| GGTGGTACTGGTTCTGGAAT+GGG | 0.369152 | 1.3:-69391967 | MS.gene34573:CDS |
| TCATTGTGGCCGAAATTAGA+TGG | 0.369833 | 1.3:+69391581 | None:intergenic |
| AGTCCGGTGCCGGAAACAAC+TGG | 0.370377 | 1.3:-69393190 | MS.gene34573:CDS |
| GAGAATTGTGATTGTCTTCA+AGG | 0.384367 | 1.3:-69393098 | MS.gene34573:intron |
| AGATCTGAACCATCTAATTT+CGG | 0.387444 | 1.3:-69391590 | MS.gene34573:CDS |
| TGTCCAAAGACGAAGTTATC+AGG | 0.391751 | 1.3:+69393212 | None:intergenic |
| TGCTGATGAATGCATGGTTC+TGG | 0.393880 | 1.3:-69391803 | MS.gene34573:CDS |
| ACAGTGGATTTCACATTGTT+GGG | 0.397830 | 1.3:+69391223 | None:intergenic |
| GGTTCCCGCATTGTCCTCCT+TGG | 0.410215 | 1.3:+69393450 | None:intergenic |
| TAGAGCTGTTCTCATGGATC+TGG | 0.416476 | 1.3:-69393288 | MS.gene34573:CDS |
| CAGGTTTGCCACTCCCTTGG+TGG | 0.418895 | 1.3:-69391988 | MS.gene34573:CDS |
| CGTTTGCATTTCTTCATGGT+GGG | 0.424005 | 1.3:-69391475 | MS.gene34573:CDS |
| TTTCAGGTTTGCCACTCCCT+TGG | 0.428262 | 1.3:-69391991 | MS.gene34573:CDS |
| GTTGTTCCCTTGGTACCTTC+CGG | 0.430541 | 1.3:+69393373 | None:intergenic |
| GTTGAAGATCGTTGTTCCCT+TGG | 0.430648 | 1.3:+69393363 | None:intergenic |
| GTCTGTGATATCCCGCCAAC+TGG | 0.432545 | 1.3:-69391202 | MS.gene34573:CDS |
| TGGTGGTACTGGTTCTGGAA+TGG | 0.433580 | 1.3:-69391968 | MS.gene34573:CDS |
| AAAGTAAGCATCATTCGATC+AGG | 0.435587 | 1.3:+69391910 | None:intergenic |
| GTAGAAAAGCTTTCTTGCAT+TGG | 0.442451 | 1.3:-69391090 | MS.gene34573:CDS |
| CTCGTGGTTCACAGCAGTAC+AGG | 0.444979 | 1.3:-69391435 | MS.gene34573:CDS |
| GCTTGGAGTAGTGAGTTTAA+GGG | 0.448732 | 1.3:+69391747 | None:intergenic |
| ATTCGGTGCTTGATGTTGTT+AGG | 0.449556 | 1.3:-69393130 | MS.gene34573:CDS |
| GTCTTTGGACAGTCCGGTGC+CGG | 0.454398 | 1.3:-69393200 | MS.gene34573:CDS |
| ACATGTTGTCTTCGATTCCC+TGG | 0.455659 | 1.3:-69391550 | MS.gene34573:CDS |
| AACTTCGTCTTTGGACAGTC+CGG | 0.467613 | 1.3:-69393206 | MS.gene34573:CDS |
| CACATCTGCTGGGTCAGCTC+AGG | 0.473481 | 1.3:+69391400 | None:intergenic |
| CTCCGTGTTCCCATCTCCTA+AGG | 0.475795 | 1.3:-69391887 | MS.gene34573:CDS |
| CTTCATCTGCAGTAGCATCT+TGG | 0.477927 | 1.3:+69390984 | None:intergenic |
| CGTTCCTAGAGCTGTTCTCA+TGG | 0.485327 | 1.3:-69393294 | MS.gene34573:CDS |
| CCAAATCGGAGCCAAATTCT+GGG | 0.486989 | 1.3:-69393429 | MS.gene34573:CDS |
| CATCTGCTCATCAACCTCCT+TGG | 0.489308 | 1.3:+69391291 | None:intergenic |
| TGGAGAGGGTATGGATGAGA+TGG | 0.489491 | 1.3:-69391062 | MS.gene34573:CDS |
| TTGGTATACTGGAGAGGGTA+TGG | 0.494465 | 1.3:-69391071 | MS.gene34573:CDS |
| ACTATGGACAGCGTCAGATC+TGG | 0.497511 | 1.3:-69393257 | MS.gene34573:CDS |
| GTTTGCCACTCCCTTGGTGG+TGG | 0.498542 | 1.3:-69391985 | MS.gene34573:CDS |
| TTCTCATGGATCTGGAGCCA+GGG | 0.504140 | 1.3:-69393280 | MS.gene34573:CDS |
| GTGTCAGATACCTTAGGAGA+TGG | 0.506140 | 1.3:+69391877 | None:intergenic |
| GAAGTTGTGTGCGCTGAGCA+CGG | 0.506720 | 1.3:-69393407 | MS.gene34573:CDS |
| GGACAATGCGGGAACCAAAT+CGG | 0.507915 | 1.3:-69393443 | MS.gene34573:CDS |
| CTGAGCTGACCCAGCAGATG+TGG | 0.508297 | 1.3:-69391399 | MS.gene34573:CDS |
| ACAGAGAGTGTAGCGTTGTA+AGG | 0.511785 | 1.3:+69391844 | None:intergenic |
| AGGAGCTGAGTTGATTGATT+CGG | 0.521449 | 1.3:-69393147 | MS.gene34573:CDS |
| ATTCATCATACTTTGTTGAG+TGG | 0.522858 | 1.3:-69391249 | MS.gene34573:CDS |
| GTCAAATAACGACCGTGGCG+AGG | 0.525061 | 1.3:+69391346 | None:intergenic |
| TGAGGAGGAAGAAGTTCAGG+AGG | 0.525475 | 1.3:-69390942 | MS.gene34573:CDS |
| TTGCATTGGTATACTGGAGA+GGG | 0.526307 | 1.3:-69391076 | MS.gene34573:CDS |
| GGGGTATGACTATGAAGATG+AGG | 0.526329 | 1.3:-69390960 | MS.gene34573:CDS |
| GGCCGGAAAATCTGACCGTA+TGG | 0.526703 | 1.3:+69393233 | None:intergenic |
| CATCAGCATTCTCAACAAGT+TGG | 0.528768 | 1.3:+69391818 | None:intergenic |
| AGATCTGAGTTCAATTGACC+AGG | 0.531971 | 1.3:+69391532 | None:intergenic |
| CTTCGAATCCCACATCTGCT+GGG | 0.532809 | 1.3:+69391390 | None:intergenic |
| ACAACAGTGTCAGATACCTT+AGG | 0.533881 | 1.3:+69391871 | None:intergenic |
| TCGTTTGCATTTCTTCATGG+TGG | 0.534932 | 1.3:-69391476 | MS.gene34573:CDS |
| AAGAAATGCAAACGAGGGAA+AGG | 0.537226 | 1.3:+69391484 | None:intergenic |
| GGTGCTTGATGTTGTTAGGA+AGG | 0.544190 | 1.3:-69393126 | MS.gene34573:CDS |
| AAGTTGTGTGCGCTGAGCAC+GGG | 0.549539 | 1.3:-69393406 | MS.gene34573:CDS |
| TACTACAACGAAGCGAGTTG+TGG | 0.552610 | 1.3:-69393323 | MS.gene34573:CDS |
| GAGGGTGAGTGAGCAATTCA+CGG | 0.553083 | 1.3:-69391122 | MS.gene34573:CDS |
| GCCGGAAACAACTGGGCGAA+AGG | 0.556278 | 1.3:-69393182 | MS.gene34573:CDS |
| AGCGTCAGATCTGGTCCATA+CGG | 0.561086 | 1.3:-69393248 | MS.gene34573:CDS |
| GAGTAGTGAGTTTAAGGGTG+CGG | 0.561131 | 1.3:+69391752 | None:intergenic |
| AGATGCTACTGCAGATGAAG+AGG | 0.562679 | 1.3:-69390981 | MS.gene34573:CDS |
| ACATCCAAGGAGGACAATGC+GGG | 0.563147 | 1.3:-69393454 | MS.gene34573:CDS |
| CTTGCATTGGTATACTGGAG+AGG | 0.565550 | 1.3:-69391077 | MS.gene34573:CDS |
| CTAATTTCGGCCACAATGAG+TGG | 0.567054 | 1.3:-69391577 | MS.gene34573:CDS |
| AGATCCATGAGAACAGCTCT+AGG | 0.569536 | 1.3:+69393290 | None:intergenic |
| CTATTCAGGAGATGTTTAGG+AGG | 0.571191 | 1.3:-69391141 | MS.gene34573:CDS |
| CTGACGCTGTCCATAGTCCC+TGG | 0.571304 | 1.3:+69393263 | None:intergenic |
| GTATGACTATGAAGATGAGG+AGG | 0.571612 | 1.3:-69390957 | MS.gene34573:CDS |
| CAGCATTCTCAACAAGTTGG+TGG | 0.573199 | 1.3:+69391821 | None:intergenic |
| TTTGCCCCACTCACTTCTCG+TGG | 0.577800 | 1.3:-69391451 | MS.gene34573:CDS |
| TCGTGGTTCACAGCAGTACA+GGG | 0.585028 | 1.3:-69391434 | MS.gene34573:CDS |
| GAGCACGGGATCGACTCCAC+CGG | 0.585627 | 1.3:-69393392 | MS.gene34573:CDS |
| CGTGAGATTCTTCACATCCA+AGG | 0.593333 | 1.3:-69393467 | MS.gene34573:CDS |
| GATGCTACTGCAGATGAAGA+GGG | 0.594540 | 1.3:-69390980 | MS.gene34573:CDS |
| CAGTACCACCACCAAGGGAG+TGG | 0.594965 | 1.3:+69391980 | None:intergenic |
| GACTCCACCGGAAGGTACCA+AGG | 0.596275 | 1.3:-69393380 | MS.gene34573:CDS |
| GTCCGGTGCCGGAAACAACT+GGG | 0.596726 | 1.3:-69393189 | MS.gene34573:CDS |
| TGCGCTGCTGATCCTCGCCA+CGG | 0.597098 | 1.3:-69391358 | MS.gene34573:CDS |
| TACCTTAGGAGATGGGAACA+CGG | 0.597343 | 1.3:+69391885 | None:intergenic |
| AAACATCTCCTGAATAGATG+TGG | 0.598080 | 1.3:+69391147 | None:intergenic |
| ACAGCATCTGCCATGTTCCG+TGG | 0.598969 | 1.3:-69391325 | MS.gene34573:CDS |
| TGTCAGATACCTTAGGAGAT+GGG | 0.602090 | 1.3:+69391878 | None:intergenic |
| CAAAGACGAAGTTATCAGGC+CGG | 0.603665 | 1.3:+69393216 | None:intergenic |
| ACATGTAACACCACTCATTG+TGG | 0.605465 | 1.3:+69391567 | None:intergenic |
| GTTCCCTTGGTACCTTCCGG+TGG | 0.611432 | 1.3:+69393376 | None:intergenic |
| AGAACCAGTACCACCACCAA+GGG | 0.618252 | 1.3:+69391975 | None:intergenic |
| TATTCAGGAGATGTTTAGGA+GGG | 0.623258 | 1.3:-69391140 | MS.gene34573:CDS |
| CACATCCAAGGAGGACAATG+CGG | 0.623605 | 1.3:-69393455 | MS.gene34573:CDS |
| TGAGCTGACCCAGCAGATGT+GGG | 0.624406 | 1.3:-69391398 | MS.gene34573:CDS |
| AAGTAAGCATCATTCGATCA+GGG | 0.636592 | 1.3:+69391911 | None:intergenic |
| ACCATGAAGAAATGCAAACG+AGG | 0.637063 | 1.3:+69391478 | None:intergenic |
| TGAGAATGCTGATGAATGCA+TGG | 0.647401 | 1.3:-69391809 | MS.gene34573:CDS |
| GCTTGATGTTGTTAGGAAGG+AGG | 0.649257 | 1.3:-69393123 | MS.gene34573:CDS |
| GCGAAAGGTCACTACACTGA+AGG | 0.656934 | 1.3:-69393167 | MS.gene34573:CDS |
| GTGAACCACGAGAAGTGAGT+GGG | 0.660953 | 1.3:+69391446 | None:intergenic |
| TGGCGGGATATCACAGACAG+TGG | 0.662431 | 1.3:+69391207 | None:intergenic |
| CCATGAAGAAATGCAAACGA+GGG | 0.665875 | 1.3:+69391479 | None:intergenic |
| ACGGGATCGACTCCACCGGA+AGG | 0.666784 | 1.3:-69393388 | MS.gene34573:CDS |
| TTTGATTTCTAAAATCAGGG+AGG | 0.671547 | 1.3:-69391938 | MS.gene34573:CDS |
| CAGAACCAGTACCACCACCA+AGG | 0.675091 | 1.3:+69391974 | None:intergenic |
| ATGCTACTGCAGATGAAGAG+GGG | 0.676889 | 1.3:-69390979 | MS.gene34573:CDS |
| TGTGAACCACGAGAAGTGAG+TGG | 0.677800 | 1.3:+69391445 | None:intergenic |
| ACTCCACCGGAAGGTACCAA+GGG | 0.680036 | 1.3:-69393379 | MS.gene34573:CDS |
| GATCTGAGTTCAATTGACCA+GGG | 0.680125 | 1.3:+69391533 | None:intergenic |
| TGGTAAAATGAGCACCAAGG+AGG | 0.701716 | 1.3:-69391305 | MS.gene34573:CDS |
| TGAACCACGAGAAGTGAGTG+GGG | 0.716024 | 1.3:+69391447 | None:intergenic |
| ATGCTGTCAAATAACGACCG+TGG | 0.720715 | 1.3:+69391341 | None:intergenic |
| ATTGCTGGTACTCTGAGACA+AGG | 0.726640 | 1.3:+69391008 | None:intergenic |
| CCGTGGTAAAATGAGCACCA+AGG | 0.726764 | 1.3:-69391308 | MS.gene34573:CDS |
| GAGATTCTTCACATCCAAGG+AGG | 0.735981 | 1.3:-69393464 | MS.gene34573:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTTGTATAACTAATT+AGG | - | chr1.3:69392011-69392030 | MS.gene34573:intron | 15.0% |
| !!! | ATTAGTTATACAAGTTTTTA+AGG | + | chr1.3:69392010-69392029 | None:intergenic | 15.0% |
| !! | AAGTAAACAAAACAAAACAA+AGG | + | chr1.3:69392349-69392368 | None:intergenic | 20.0% |
| !! | ATTATTAGCAAAAACTTAAC+AGG | + | chr1.3:69392709-69392728 | None:intergenic | 20.0% |
| !! | TATTACTAACACTTCAAAAT+GGG | + | chr1.3:69391783-69391802 | None:intergenic | 20.0% |
| !! | TTATTACTAACACTTCAAAA+TGG | + | chr1.3:69391784-69391803 | None:intergenic | 20.0% |
| !!! | ACTTTTGATTTCTAAAATCA+GGG | - | chr1.3:69392460-69392479 | MS.gene34573:intron | 20.0% |
| !!! | TGTTTTGTTTACTTGAATTT+GGG | - | chr1.3:69392355-69392374 | MS.gene34573:intron | 20.0% |
| !!! | TTGATAATCAGATTTGATAT+GGG | - | chr1.3:69392049-69392068 | MS.gene34573:intron | 20.0% |
| !!! | TTGTTTTGTTTACTTGAATT+TGG | - | chr1.3:69392354-69392373 | MS.gene34573:intron | 20.0% |
| ! | AAACAATTAGAAGCAGAAAT+CGG | + | chr1.3:69391340-69391359 | None:intergenic | 25.0% |
| ! | TCTATGTGTTGTGATAAATT+AGG | - | chr1.3:69392223-69392242 | MS.gene34573:intron | 25.0% |
| ! | TTAGAAGTTGTGATATAACT+TGG | - | chr1.3:69392290-69392309 | MS.gene34573:intron | 25.0% |
| !! | ATTTGAAGTGCTATAGTAAT+AGG | - | chr1.3:69392101-69392120 | MS.gene34573:intron | 25.0% |
| !!! | AAAATGGCTTCTACTTTTAT+TGG | - | chr1.3:69393226-69393245 | MS.gene34573:CDS | 25.0% |
| !!! | CACTTTTGATTTCTAAAATC+AGG | - | chr1.3:69392459-69392478 | MS.gene34573:intron | 25.0% |
| !!! | GTTGATAATCAGATTTGATA+TGG | - | chr1.3:69392048-69392067 | MS.gene34573:intron | 25.0% |
| AAACTTAACAGGCAAAAACA+TGG | + | chr1.3:69392698-69392717 | None:intergenic | 30.0% | |
| AACTTAACAGGCAAAAACAT+GGG | + | chr1.3:69392697-69392716 | None:intergenic | 30.0% | |
| ACAAGTTATTCAAAACACAG+TGG | + | chr1.3:69392169-69392188 | None:intergenic | 30.0% | |
| ACACAAAAATTCCTAGATCA+AGG | + | chr1.3:69391550-69391569 | None:intergenic | 30.0% | |
| AGATCTGAACCATCTAATTT+CGG | - | chr1.3:69392811-69392830 | MS.gene34573:intron | 30.0% | |
| ATTCATCATACTTTGTTGAG+TGG | - | chr1.3:69393152-69393171 | MS.gene34573:CDS | 30.0% | |
| ! | AATGCAAGAAAGCTTTTCTA+CGG | + | chr1.3:69393312-69393331 | None:intergenic | 30.0% |
| ! | TGAATTTGGGATTTCTAACA+TGG | - | chr1.3:69392368-69392387 | MS.gene34573:intron | 30.0% |
| ! | TTAGTATGTAAGAGCATGTT+TGG | - | chr1.3:69392198-69392217 | MS.gene34573:intron | 30.0% |
| !! | TTTGATTTCTAAAATCAGGG+AGG | - | chr1.3:69392463-69392482 | MS.gene34573:intron | 30.0% |
| AAACATCTCCTGAATAGATG+TGG | + | chr1.3:69393257-69393276 | None:intergenic | 35.0% | |
| AAAGTAAGCATCATTCGATC+AGG | + | chr1.3:69392494-69392513 | None:intergenic | 35.0% | |
| AAGTAAGCATCATTCGATCA+GGG | + | chr1.3:69392493-69392512 | None:intergenic | 35.0% | |
| AATCAGATTTGATATGGGAG+TGG | - | chr1.3:69392054-69392073 | MS.gene34573:intron | 35.0% | |
| ATTATGATGAACTCACAGCT+TGG | + | chr1.3:69392674-69392693 | None:intergenic | 35.0% | |
| CATCTATTCAGGAGATGTTT+AGG | - | chr1.3:69393257-69393276 | MS.gene34573:CDS | 35.0% | |
| GAGAATTGTGATTGTCTTCA+AGG | - | chr1.3:69391303-69391322 | MS.gene34573:CDS | 35.0% | |
| GTAGAAAAGCTTTCTTGCAT+TGG | - | chr1.3:69393311-69393330 | MS.gene34573:CDS | 35.0% | |
| TATTCAGGAGATGTTTAGGA+GGG | - | chr1.3:69393261-69393280 | MS.gene34573:CDS | 35.0% | |
| TGATATAACTTGGACGTGTA+TGG | - | chr1.3:69392300-69392319 | MS.gene34573:intron | 35.0% | |
| ! | AAATTGAGCCTTGTGTTGTT+TGG | - | chr1.3:69392778-69392797 | MS.gene34573:intron | 35.0% |
| ! | ACAGTGGATTTCACATTGTT+GGG | + | chr1.3:69393181-69393200 | None:intergenic | 35.0% |
| ! | CATGGTTTTCAGAATCTTTC+AGG | - | chr1.3:69392386-69392405 | MS.gene34573:intron | 35.0% |
| !!! | AGAGTTTTGAACCTTGATCT+AGG | - | chr1.3:69391849-69391868 | MS.gene34573:CDS | 35.0% |
| !!! | TCAGAATCTTTCAGGTTTTC+AGG | - | chr1.3:69392394-69392413 | MS.gene34573:intron | 35.0% |
| AACTGCAACCAAACAACACA+AGG | + | chr1.3:69392789-69392808 | None:intergenic | 40.0% | |
| AAGAAATGCAAACGAGGGAA+AGG | + | chr1.3:69392920-69392939 | None:intergenic | 40.0% | |
| ACAACAGTGTCAGATACCTT+AGG | + | chr1.3:69392533-69392552 | None:intergenic | 40.0% | |
| ACATGTAACACCACTCATTG+TGG | + | chr1.3:69392837-69392856 | None:intergenic | 40.0% | |
| ACCATGAAGAAATGCAAACG+AGG | + | chr1.3:69392926-69392945 | None:intergenic | 40.0% | |
| AGATCTGAGTTCAATTGACC+AGG | + | chr1.3:69392872-69392891 | None:intergenic | 40.0% | |
| AGCTTGGAGTAGTGAGTTTA+AGG | + | chr1.3:69392658-69392677 | None:intergenic | 40.0% | |
| CATCAGCATTCTCAACAAGT+TGG | + | chr1.3:69392586-69392605 | None:intergenic | 40.0% | |
| CCATGAAGAAATGCAAACGA+GGG | + | chr1.3:69392925-69392944 | None:intergenic | 40.0% | |
| CGTTTGCATTTCTTCATGGT+GGG | - | chr1.3:69392926-69392945 | MS.gene34573:intron | 40.0% | |
| CTATTCAGGAGATGTTTAGG+AGG | - | chr1.3:69393260-69393279 | MS.gene34573:CDS | 40.0% | |
| GAACTCAGATCTTCGCAAAT+TGG | - | chr1.3:69392880-69392899 | MS.gene34573:intron | 40.0% | |
| GATCTGAGTTCAATTGACCA+GGG | + | chr1.3:69392871-69392890 | None:intergenic | 40.0% | |
| GCACAGAAATTCCTAGATCA+AGG | + | chr1.3:69391863-69391882 | None:intergenic | 40.0% | |
| GCTTGGAGTAGTGAGTTTAA+GGG | + | chr1.3:69392657-69392676 | None:intergenic | 40.0% | |
| GTATGACTATGAAGATGAGG+AGG | - | chr1.3:69393444-69393463 | MS.gene34573:CDS | 40.0% | |
| TCATTGTGGCCGAAATTAGA+TGG | + | chr1.3:69392823-69392842 | None:intergenic | 40.0% | |
| TCGTTTGCATTTCTTCATGG+TGG | - | chr1.3:69392925-69392944 | MS.gene34573:intron | 40.0% | |
| TGAGAATGCTGATGAATGCA+TGG | - | chr1.3:69392592-69392611 | MS.gene34573:intron | 40.0% | |
| TGGTAACTCCACATCTATTC+AGG | - | chr1.3:69393246-69393265 | MS.gene34573:CDS | 40.0% | |
| TGTCAGATACCTTAGGAGAT+GGG | + | chr1.3:69392526-69392545 | None:intergenic | 40.0% | |
| TGTCCAAAGACGAAGTTATC+AGG | + | chr1.3:69391192-69391211 | None:intergenic | 40.0% | |
| ! | GAAAGCTTTTCTACGGAACA+TGG | + | chr1.3:69393305-69393324 | None:intergenic | 40.0% |
| ! | GACAGTGGATTTCACATTGT+TGG | + | chr1.3:69393182-69393201 | None:intergenic | 40.0% |
| ! | GCTTTCTTGCATTGGTATAC+TGG | - | chr1.3:69393319-69393338 | MS.gene34573:CDS | 40.0% |
| ! | TTGCATTGGTATACTGGAGA+GGG | - | chr1.3:69393325-69393344 | MS.gene34573:CDS | 40.0% |
| !! | AGGAGCTGAGTTGATTGATT+CGG | - | chr1.3:69391254-69391273 | MS.gene34573:CDS | 40.0% |
| !! | ATTCGGTGCTTGATGTTGTT+AGG | - | chr1.3:69391271-69391290 | MS.gene34573:CDS | 40.0% |
| !! | TTGTGTTGTTTGGTTGCAGT+TGG | - | chr1.3:69392788-69392807 | MS.gene34573:intron | 40.0% |
| !!! | GAAGCCATTTTAAGACCAGT+TGG | + | chr1.3:69393217-69393236 | None:intergenic | 40.0% |
| AACTTCGTCTTTGGACAGTC+CGG | - | chr1.3:69391195-69391214 | MS.gene34573:CDS | 45.0% | |
| ACATGTTGTCTTCGATTCCC+TGG | - | chr1.3:69392851-69392870 | MS.gene34573:intron | 45.0% | |
| ACCAAATCGGAGCCAAATTC+TGG | - | chr1.3:69390971-69390990 | MS.gene34573:CDS | 45.0% | |
| AGAGAATCGAGCCTTGATCT+AGG | - | chr1.3:69391536-69391555 | MS.gene34573:CDS | 45.0% | |
| AGATCCATGAGAACAGCTCT+AGG | + | chr1.3:69391114-69391133 | None:intergenic | 45.0% | |
| AGATGAGGAGGAAGAAGTTC+AGG | - | chr1.3:69393456-69393475 | MS.gene34573:CDS | 45.0% | |
| AGATGCTACTGCAGATGAAG+AGG | - | chr1.3:69393420-69393439 | MS.gene34573:CDS | 45.0% | |
| ATGCTACTGCAGATGAAGAG+GGG | - | chr1.3:69393422-69393441 | MS.gene34573:CDS | 45.0% | |
| ATGCTGTCAAATAACGACCG+TGG | + | chr1.3:69393063-69393082 | None:intergenic | 45.0% | |
| CAAAGACGAAGTTATCAGGC+CGG | + | chr1.3:69391188-69391207 | None:intergenic | 45.0% | |
| CAGTAGCATCTTGGTATTGC+TGG | + | chr1.3:69393411-69393430 | None:intergenic | 45.0% | |
| CCAAATCGGAGCCAAATTCT+GGG | - | chr1.3:69390972-69390991 | MS.gene34573:CDS | 45.0% | |
| CCCTCGTTTGCATTTCTTCA+TGG | - | chr1.3:69392922-69392941 | MS.gene34573:intron | 45.0% | |
| CGTGAGATTCTTCACATCCA+AGG | - | chr1.3:69390934-69390953 | MS.gene34573:CDS | 45.0% | |
| CTAATTTCGGCCACAATGAG+TGG | - | chr1.3:69392824-69392843 | MS.gene34573:intron | 45.0% | |
| CTTCATCTGCAGTAGCATCT+TGG | + | chr1.3:69393420-69393439 | None:intergenic | 45.0% | |
| GAGATTCTTCACATCCAAGG+AGG | - | chr1.3:69390937-69390956 | MS.gene34573:CDS | 45.0% | |
| GAGTAGTGAGTTTAAGGGTG+CGG | + | chr1.3:69392652-69392671 | None:intergenic | 45.0% | |
| GATGCTACTGCAGATGAAGA+GGG | - | chr1.3:69393421-69393440 | MS.gene34573:CDS | 45.0% | |
| GCACACAACTTCCCAGAATT+TGG | + | chr1.3:69390986-69391005 | None:intergenic | 45.0% | |
| GCTTGATGTTGTTAGGAAGG+AGG | - | chr1.3:69391278-69391297 | MS.gene34573:CDS | 45.0% | |
| GGGGTATGACTATGAAGATG+AGG | - | chr1.3:69393441-69393460 | MS.gene34573:CDS | 45.0% | |
| GGTGCTTGATGTTGTTAGGA+AGG | - | chr1.3:69391275-69391294 | MS.gene34573:CDS | 45.0% | |
| GTGTCAGATACCTTAGGAGA+TGG | + | chr1.3:69392527-69392546 | None:intergenic | 45.0% | |
| GTTGAAGATCGTTGTTCCCT+TGG | + | chr1.3:69391041-69391060 | None:intergenic | 45.0% | |
| TACCTTAGGAGATGGGAACA+CGG | + | chr1.3:69392519-69392538 | None:intergenic | 45.0% | |
| TACTACAACGAAGCGAGTTG+TGG | - | chr1.3:69391078-69391097 | MS.gene34573:CDS | 45.0% | |
| TAGAGCTGTTCTCATGGATC+TGG | - | chr1.3:69391113-69391132 | MS.gene34573:CDS | 45.0% | |
| TGCTGATGAATGCATGGTTC+TGG | - | chr1.3:69392598-69392617 | MS.gene34573:intron | 45.0% | |
| TGGTAAAATGAGCACCAAGG+AGG | - | chr1.3:69393096-69393115 | MS.gene34573:intron | 45.0% | |
| TTGGTATACTGGAGAGGGTA+TGG | - | chr1.3:69393330-69393349 | MS.gene34573:CDS | 45.0% | |
| ! | ACAGAGAGTGTAGCGTTGTA+AGG | + | chr1.3:69392560-69392579 | None:intergenic | 45.0% |
| ! | CAGCATTCTCAACAAGTTGG+TGG | + | chr1.3:69392583-69392602 | None:intergenic | 45.0% |
| ! | CTTGCATTGGTATACTGGAG+AGG | - | chr1.3:69393324-69393343 | MS.gene34573:CDS | 45.0% |
| ! | GCTCATTTTACCACGGAACA+TGG | + | chr1.3:69393089-69393108 | None:intergenic | 45.0% |
| ! | GTCCATACGGTCAGATTTTC+CGG | - | chr1.3:69391166-69391185 | MS.gene34573:CDS | 45.0% |
| !! | ATTGCTGGTACTCTGAGACA+AGG | + | chr1.3:69393396-69393415 | None:intergenic | 45.0% |
| !!! | CCATTTTAAGACCAGTTGGC+GGG | + | chr1.3:69393213-69393232 | None:intergenic | 45.0% |
| !!! | CCTTGGTGCTCATTTTACCA+CGG | + | chr1.3:69393096-69393115 | None:intergenic | 45.0% |
| !!! | GCCATTTTAAGACCAGTTGG+CGG | + | chr1.3:69393214-69393233 | None:intergenic | 45.0% |
| ACATCCAAGGAGGACAATGC+GGG | - | chr1.3:69390947-69390966 | MS.gene34573:CDS | 50.0% | |
| ACTATGGACAGCGTCAGATC+TGG | - | chr1.3:69391144-69391163 | MS.gene34573:CDS | 50.0% | |
| AGAACCAGTACCACCACCAA+GGG | + | chr1.3:69392429-69392448 | None:intergenic | 50.0% | |
| AGCGTCAGATCTGGTCCATA+CGG | - | chr1.3:69391153-69391172 | MS.gene34573:CDS | 50.0% | |
| CACATCCAAGGAGGACAATG+CGG | - | chr1.3:69390946-69390965 | MS.gene34573:CDS | 50.0% | |
| CATCTGCTCATCAACCTCCT+TGG | + | chr1.3:69393113-69393132 | None:intergenic | 50.0% | |
| CCGTGGTAAAATGAGCACCA+AGG | - | chr1.3:69393093-69393112 | MS.gene34573:intron | 50.0% | |
| CGGCCTGATAACTTCGTCTT+TGG | - | chr1.3:69391186-69391205 | MS.gene34573:CDS | 50.0% | |
| CGTTCCTAGAGCTGTTCTCA+TGG | - | chr1.3:69391107-69391126 | MS.gene34573:CDS | 50.0% | |
| CTTCGAATCCCACATCTGCT+GGG | + | chr1.3:69393014-69393033 | None:intergenic | 50.0% | |
| GAGGGTGAGTGAGCAATTCA+CGG | - | chr1.3:69393279-69393298 | MS.gene34573:CDS | 50.0% | |
| GCGAAAGGTCACTACACTGA+AGG | - | chr1.3:69391234-69391253 | MS.gene34573:CDS | 50.0% | |
| GGACAATGCGGGAACCAAAT+CGG | - | chr1.3:69390958-69390977 | MS.gene34573:CDS | 50.0% | |
| GTGAACCACGAGAAGTGAGT+GGG | + | chr1.3:69392958-69392977 | None:intergenic | 50.0% | |
| GTTGTTCCCTTGGTACCTTC+CGG | + | chr1.3:69391031-69391050 | None:intergenic | 50.0% | |
| TCGTGGTTCACAGCAGTACA+GGG | - | chr1.3:69392967-69392986 | MS.gene34573:intron | 50.0% | |
| TCTTCGAATCCCACATCTGC+TGG | + | chr1.3:69393015-69393034 | None:intergenic | 50.0% | |
| TGAACCACGAGAAGTGAGTG+GGG | + | chr1.3:69392957-69392976 | None:intergenic | 50.0% | |
| TGAGGAGGAAGAAGTTCAGG+AGG | - | chr1.3:69393459-69393478 | MS.gene34573:CDS | 50.0% | |
| TGTGAACCACGAGAAGTGAG+TGG | + | chr1.3:69392959-69392978 | None:intergenic | 50.0% | |
| ! | ACCTTTCGCCCAGTTGTTTC+CGG | + | chr1.3:69391223-69391242 | None:intergenic | 50.0% |
| ! | CCCAGAATTTGGCTCCGATT+TGG | + | chr1.3:69390975-69390994 | None:intergenic | 50.0% |
| ! | TGGAGAGGGTATGGATGAGA+TGG | - | chr1.3:69393339-69393358 | MS.gene34573:CDS | 50.0% |
| ! | TTCTCATGGATCTGGAGCCA+GGG | - | chr1.3:69391121-69391140 | MS.gene34573:CDS | 50.0% |
| !! | CCCGCCAACTGGTCTTAAAA+TGG | - | chr1.3:69393210-69393229 | MS.gene34573:CDS | 50.0% |
| !! | GGTGGTACTGGTTCTGGAAT+GGG | - | chr1.3:69392434-69392453 | MS.gene34573:intron | 50.0% |
| !! | TGGTGGTACTGGTTCTGGAA+TGG | - | chr1.3:69392433-69392452 | MS.gene34573:intron | 50.0% |
| !! | TTTCAGGTTTGCCACTCCCT+TGG | - | chr1.3:69392410-69392429 | MS.gene34573:intron | 50.0% |
| AAGTTGTGTGCGCTGAGCAC+GGG | - | chr1.3:69390995-69391014 | MS.gene34573:CDS | 55.0% | |
| ACAGCATCTGCCATGTTCCG+TGG | - | chr1.3:69393076-69393095 | MS.gene34573:intron | 55.0% | |
| CAGAACCAGTACCACCACCA+AGG | + | chr1.3:69392430-69392449 | None:intergenic | 55.0% | |
| CTCCGTGTTCCCATCTCCTA+AGG | - | chr1.3:69392514-69392533 | MS.gene34573:intron | 55.0% | |
| CTCGTGGTTCACAGCAGTAC+AGG | - | chr1.3:69392966-69392985 | MS.gene34573:intron | 55.0% | |
| GAAGTTGTGTGCGCTGAGCA+CGG | - | chr1.3:69390994-69391013 | MS.gene34573:CDS | 55.0% | |
| GGCCGGAAAATCTGACCGTA+TGG | + | chr1.3:69391171-69391190 | None:intergenic | 55.0% | |
| GTCAAATAACGACCGTGGCG+AGG | + | chr1.3:69393058-69393077 | None:intergenic | 55.0% | |
| GTCTGTGATATCCCGCCAAC+TGG | - | chr1.3:69393199-69393218 | MS.gene34573:CDS | 55.0% | |
| TGAGCTGACCCAGCAGATGT+GGG | - | chr1.3:69393003-69393022 | MS.gene34573:intron | 55.0% | |
| TGGCGGGATATCACAGACAG+TGG | + | chr1.3:69393197-69393216 | None:intergenic | 55.0% | |
| TTTGCCCCACTCACTTCTCG+TGG | - | chr1.3:69392950-69392969 | MS.gene34573:intron | 55.0% | |
| ! | GTTCTCATGGATCTGGAGCC+AGG | - | chr1.3:69391120-69391139 | MS.gene34573:CDS | 55.0% |
| !! | ACTCCACCGGAAGGTACCAA+GGG | - | chr1.3:69391022-69391041 | MS.gene34573:CDS | 55.0% |
| !! | CTTGGTGGTGGTACTGGTTC+TGG | - | chr1.3:69392428-69392447 | MS.gene34573:intron | 55.0% |
| CACATCTGCTGGGTCAGCTC+AGG | + | chr1.3:69393004-69393023 | None:intergenic | 60.0% | |
| CAGGTTTGCCACTCCCTTGG+TGG | - | chr1.3:69392413-69392432 | MS.gene34573:intron | 60.0% | |
| CAGTACCACCACCAAGGGAG+TGG | + | chr1.3:69392424-69392443 | None:intergenic | 60.0% | |
| CTGACGCTGTCCATAGTCCC+TGG | + | chr1.3:69391141-69391160 | None:intergenic | 60.0% | |
| CTGAGCTGACCCAGCAGATG+TGG | - | chr1.3:69393002-69393021 | MS.gene34573:intron | 60.0% | |
| GCCGGAAACAACTGGGCGAA+AGG | - | chr1.3:69391219-69391238 | MS.gene34573:CDS | 60.0% | |
| GGTTCCCGCATTGTCCTCCT+TGG | + | chr1.3:69390954-69390973 | None:intergenic | 60.0% | |
| GTCTTTGGACAGTCCGGTGC+CGG | - | chr1.3:69391201-69391220 | MS.gene34573:CDS | 60.0% | |
| GTTCCCTTGGTACCTTCCGG+TGG | + | chr1.3:69391028-69391047 | None:intergenic | 60.0% | |
| GTTTGCCACTCCCTTGGTGG+TGG | - | chr1.3:69392416-69392435 | MS.gene34573:intron | 60.0% | |
| ! | AGTCCGGTGCCGGAAACAAC+TGG | - | chr1.3:69391211-69391230 | MS.gene34573:CDS | 60.0% |
| ! | GGATCTGGAGCCAGGGACTA+TGG | - | chr1.3:69391128-69391147 | MS.gene34573:CDS | 60.0% |
| ! | GTCCGGTGCCGGAAACAACT+GGG | - | chr1.3:69391212-69391231 | MS.gene34573:CDS | 60.0% |
| !! | CACTCCCTTGGTGGTGGTAC+TGG | - | chr1.3:69392422-69392441 | MS.gene34573:intron | 60.0% |
| !! | GACTCCACCGGAAGGTACCA+AGG | - | chr1.3:69391021-69391040 | MS.gene34573:CDS | 60.0% |
| TGCGCTGCTGATCCTCGCCA+CGG | - | chr1.3:69393043-69393062 | MS.gene34573:intron | 65.0% | |
| ! | ACGGGATCGACTCCACCGGA+AGG | - | chr1.3:69391013-69391032 | MS.gene34573:CDS | 65.0% |
| ! | CGCCCAGTTGTTTCCGGCAC+CGG | + | chr1.3:69391217-69391236 | None:intergenic | 65.0% |
| ! | GAGCACGGGATCGACTCCAC+CGG | - | chr1.3:69391009-69391028 | MS.gene34573:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 69390931 | 69393492 | 69390931 | ID=MS.gene34573 |
| chr1.3 | mRNA | 69390931 | 69393492 | 69390931 | ID=MS.gene34573.t1;Parent=MS.gene34573 |
| chr1.3 | exon | 69393099 | 69393492 | 69393099 | ID=MS.gene34573.t1.exon1;Parent=MS.gene34573.t1 |
| chr1.3 | CDS | 69393099 | 69393492 | 69393099 | ID=cds.MS.gene34573.t1;Parent=MS.gene34573.t1 |
| chr1.3 | exon | 69391746 | 69392015 | 69391746 | ID=MS.gene34573.t1.exon2;Parent=MS.gene34573.t1 |
| chr1.3 | CDS | 69391746 | 69392015 | 69391746 | ID=cds.MS.gene34573.t1;Parent=MS.gene34573.t1 |
| chr1.3 | exon | 69390931 | 69391616 | 69390931 | ID=MS.gene34573.t1.exon3;Parent=MS.gene34573.t1 |
| chr1.3 | CDS | 69390931 | 69391616 | 69390931 | ID=cds.MS.gene34573.t1;Parent=MS.gene34573.t1 |
| Gene Sequence |
| Protein sequence |
