Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42253.t1 | PNX96892.1 | 99.8 | 449 | 1 | 0 | 1 | 449 | 1 | 449 | 4.90E-261 | 909.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42253.t1 | Q39445 | 98.4 | 449 | 7 | 0 | 1 | 449 | 1 | 449 | 3.5e-260 | 898.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42253.t1 | A0A2K3N1J7 | 99.8 | 449 | 1 | 0 | 1 | 449 | 1 | 449 | 3.5e-261 | 909.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049243 | MS.gene42253 | 0.801603 | 8.33E-49 | -1.69E-46 |
| MS.gene050818 | MS.gene42253 | 0.830025 | 3.70E-55 | -1.69E-46 |
| MS.gene050894 | MS.gene42253 | 0.866882 | 2.06E-65 | -1.69E-46 |
| MS.gene051885 | MS.gene42253 | 0.812434 | 4.25E-51 | -1.69E-46 |
| MS.gene054585 | MS.gene42253 | 0.8087 | 2.72E-50 | -1.69E-46 |
| MS.gene058015 | MS.gene42253 | 0.806784 | 6.95E-50 | -1.69E-46 |
| MS.gene060076 | MS.gene42253 | 0.827561 | 1.46E-54 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42253.t1 | MTR_3g113970 | 99.333 | 450 | 2 | 1 | 1 | 449 | 1 | 450 | 0.0 | 936 |
| MS.gene42253.t1 | MTR_2g031310 | 94.907 | 432 | 20 | 1 | 1 | 432 | 1 | 430 | 0.0 | 839 |
| MS.gene42253.t1 | MTR_7g089120 | 93.750 | 432 | 25 | 1 | 1 | 432 | 1 | 430 | 0.0 | 833 |
| MS.gene42253.t1 | MTR_4g094535 | 93.981 | 432 | 24 | 1 | 1 | 432 | 1 | 430 | 0.0 | 832 |
| MS.gene42253.t1 | MTR_1g101130 | 93.287 | 432 | 27 | 1 | 1 | 432 | 1 | 430 | 0.0 | 831 |
| MS.gene42253.t1 | MTR_4g019110 | 92.593 | 432 | 30 | 1 | 1 | 432 | 1 | 430 | 0.0 | 827 |
| MS.gene42253.t1 | MTR_4g017630 | 93.056 | 432 | 28 | 1 | 1 | 432 | 1 | 430 | 0.0 | 825 |
| MS.gene42253.t1 | MTR_4g019090 | 92.361 | 432 | 31 | 1 | 1 | 432 | 1 | 430 | 0.0 | 824 |
| MS.gene42253.t1 | MTR_8g098360 | 92.558 | 430 | 30 | 1 | 1 | 430 | 1 | 428 | 0.0 | 820 |
| MS.gene42253.t1 | MTR_8g107250 | 89.640 | 444 | 40 | 3 | 1 | 441 | 1 | 441 | 0.0 | 817 |
| MS.gene42253.t1 | MTR_8g085980 | 40.553 | 434 | 250 | 1 | 1 | 426 | 1 | 434 | 1.28e-124 | 369 |
| MS.gene42253.t1 | MTR_1g106005 | 40.611 | 458 | 244 | 4 | 1 | 447 | 1 | 441 | 9.92e-123 | 365 |
| MS.gene42253.t1 | MTR_3g110720 | 40.220 | 455 | 244 | 4 | 1 | 444 | 1 | 438 | 1.56e-122 | 364 |
| MS.gene42253.t1 | MTR_4g097830 | 40.220 | 455 | 244 | 4 | 1 | 444 | 1 | 438 | 3.60e-122 | 363 |
| MS.gene42253.t1 | MTR_7g085800 | 39.159 | 452 | 253 | 2 | 1 | 444 | 1 | 438 | 4.62e-122 | 363 |
| MS.gene42253.t1 | MTR_6g029190 | 39.955 | 448 | 259 | 3 | 1 | 438 | 1 | 448 | 5.82e-122 | 363 |
| MS.gene42253.t1 | MTR_2g041670 | 36.947 | 452 | 268 | 4 | 1 | 440 | 1 | 447 | 3.35e-100 | 308 |
| MS.gene42253.t1 | MTR_7g117050 | 35.498 | 462 | 267 | 10 | 2 | 444 | 3 | 452 | 1.49e-96 | 298 |
| MS.gene42253.t1 | MTR_2g041400 | 36.682 | 428 | 258 | 3 | 1 | 420 | 1 | 423 | 1.56e-96 | 296 |
| MS.gene42253.t1 | MTR_3g063410 | 32.432 | 148 | 92 | 1 | 258 | 397 | 30 | 177 | 1.99e-27 | 108 |
| MS.gene42253.t1 | MTR_3g063410 | 30.370 | 135 | 86 | 1 | 271 | 397 | 4 | 138 | 2.27e-20 | 87.8 |
| MS.gene42253.t1 | MTR_4g093670 | 82.759 | 29 | 5 | 0 | 379 | 407 | 1 | 29 | 8.61e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42253.t1 | AT1G75780 | 94.676 | 432 | 22 | 1 | 1 | 432 | 1 | 431 | 0.0 | 840 |
| MS.gene42253.t1 | AT1G20010 | 94.213 | 432 | 24 | 1 | 1 | 432 | 1 | 431 | 0.0 | 836 |
| MS.gene42253.t1 | AT5G12250 | 93.287 | 432 | 27 | 1 | 1 | 432 | 1 | 430 | 0.0 | 832 |
| MS.gene42253.t1 | AT5G23860 | 93.519 | 432 | 26 | 1 | 1 | 432 | 1 | 430 | 0.0 | 831 |
| MS.gene42253.t1 | AT5G23860 | 93.519 | 432 | 26 | 1 | 1 | 432 | 1 | 430 | 0.0 | 831 |
| MS.gene42253.t1 | AT5G62700 | 93.287 | 432 | 27 | 1 | 1 | 432 | 1 | 430 | 0.0 | 828 |
| MS.gene42253.t1 | AT5G62690 | 93.287 | 432 | 27 | 1 | 1 | 432 | 1 | 430 | 0.0 | 828 |
| MS.gene42253.t1 | AT2G29550 | 93.072 | 433 | 28 | 1 | 1 | 433 | 1 | 431 | 0.0 | 825 |
| MS.gene42253.t1 | AT5G44340 | 92.361 | 432 | 31 | 1 | 1 | 432 | 1 | 430 | 0.0 | 820 |
| MS.gene42253.t1 | AT4G20890 | 93.023 | 430 | 28 | 1 | 1 | 430 | 1 | 428 | 0.0 | 819 |
| MS.gene42253.t1 | AT1G64740 | 40.092 | 434 | 252 | 1 | 1 | 426 | 1 | 434 | 2.43e-124 | 369 |
| MS.gene42253.t1 | AT5G19780 | 40.323 | 434 | 251 | 1 | 1 | 426 | 1 | 434 | 4.82e-124 | 368 |
| MS.gene42253.t1 | AT5G19770 | 40.323 | 434 | 251 | 1 | 1 | 426 | 1 | 434 | 4.82e-124 | 368 |
| MS.gene42253.t1 | AT1G04820 | 40.732 | 437 | 245 | 3 | 1 | 426 | 1 | 434 | 3.42e-122 | 363 |
| MS.gene42253.t1 | AT1G50010 | 40.732 | 437 | 245 | 3 | 1 | 426 | 1 | 434 | 3.42e-122 | 363 |
| MS.gene42253.t1 | AT4G14960 | 40.503 | 437 | 246 | 3 | 1 | 426 | 1 | 434 | 2.57e-121 | 361 |
| MS.gene42253.t1 | AT4G14960 | 40.360 | 389 | 218 | 3 | 1 | 378 | 1 | 386 | 6.59e-102 | 311 |
| MS.gene42253.t1 | AT5G05620 | 35.065 | 462 | 269 | 10 | 2 | 444 | 3 | 452 | 1.13e-95 | 296 |
| MS.gene42253.t1 | AT3G61650 | 34.979 | 466 | 272 | 10 | 2 | 448 | 3 | 456 | 1.98e-95 | 295 |
Find 122 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCCTGATAATTTCGTATT+TGG | 0.116639 | 3.2:-90352107 | MS.gene42253:CDS |
| CCCAGAATTTGGATCCAATT+TGG | 0.211203 | 3.2:+90352327 | None:intergenic |
| AATCTGGTGCTGGTAATAAT+TGG | 0.217101 | 3.2:-90352082 | MS.gene42253:CDS |
| ACCAAATTGGATCCAAATTC+TGG | 0.227415 | 3.2:-90352328 | MS.gene42253:CDS |
| GCATATCACCTCCCAGAATT+TGG | 0.235569 | 3.2:+90352316 | None:intergenic |
| CTTGGAGGAGGCACGGGTTC+TGG | 0.250950 | 3.2:-90350203 | MS.gene42253:CDS |
| CACATTTGTTGAGTCAGTTC+CGG | 0.265997 | 3.2:+90349665 | None:intergenic |
| CTTCAATTCAGGAGATGTTT+AGG | 0.278983 | 3.2:-90349409 | MS.gene42253:CDS |
| TGGGAACTCAACTTCAATTC+AGG | 0.292593 | 3.2:-90349420 | MS.gene42253:CDS |
| ACATGTTGTCTGAGGTTTCC+TGG | 0.293676 | 3.2:-90349815 | MS.gene42253:CDS |
| TGTTCCTAGAGCAGTTCTTA+TGG | 0.307963 | 3.2:-90352186 | MS.gene42253:CDS |
| GGCCAATGCGGTAACCAAAT+TGG | 0.311892 | 3.2:-90352341 | MS.gene42253:CDS |
| GGACGACATCTTCAAATTCT+TGG | 0.312961 | 3.2:+90349451 | None:intergenic |
| ACATTTGTTGAGTCAGTTCC+GGG | 0.324818 | 3.2:+90349666 | None:intergenic |
| AGTATCAGATCTGGTCCTTT+TGG | 0.326490 | 3.2:-90352140 | MS.gene42253:CDS |
| AATTTCGTATTTGGACAATC+TGG | 0.350766 | 3.2:-90352098 | MS.gene42253:CDS |
| TGTCCAAATACGAAATTATC+AGG | 0.353111 | 3.2:+90352104 | None:intergenic |
| AGCAGCACACATCATATTCT+TGG | 0.353564 | 3.2:+90349637 | None:intergenic |
| GATTTGTTCATCAACCTCTT+TGG | 0.362636 | 3.2:+90349556 | None:intergenic |
| CTATTGCATCCTGGTATTGT+TGG | 0.375777 | 3.2:+90349258 | None:intergenic |
| ATTCTTCATACTTTGTTGAA+TGG | 0.376461 | 3.2:-90349514 | MS.gene42253:CDS |
| CTCTATTGATATCAAAGATT+AGG | 0.378228 | 3.2:-90350172 | MS.gene42253:CDS |
| CCCAGTATACCAATGCAAAA+AGG | 0.378377 | 3.2:+90349346 | None:intergenic |
| CACTTTATGACATTTGCTTC+AGG | 0.383936 | 3.2:-90350001 | MS.gene42253:CDS |
| ACACTAGACTTCACATTGTT+GGG | 0.386553 | 3.2:+90349488 | None:intergenic |
| CACACTAGACTTCACATTGT+TGG | 0.390184 | 3.2:+90349487 | None:intergenic |
| TCTATTGATATCAAAGATTA+GGG | 0.396270 | 3.2:-90350171 | MS.gene42253:CDS |
| CAAGTTTGCCACTCCCTTGG+AGG | 0.398051 | 3.2:-90350218 | MS.gene42253:CDS |
| AGAGAGTAACATGAATGATT+TGG | 0.405537 | 3.2:-90349291 | MS.gene42253:CDS |
| CACTCCCTTGGAGGAGGCAC+GGG | 0.410186 | 3.2:-90350209 | MS.gene42253:CDS |
| TTTCAAGTTTGCCACTCCCT+TGG | 0.411514 | 3.2:-90350221 | MS.gene42253:CDS |
| AGCAGTTTACTGCAATGTTC+CGG | 0.413290 | 3.2:-90349376 | MS.gene42253:CDS |
| ACAGATAGTGTAGCATTATA+TGG | 0.417861 | 3.2:+90350074 | None:intergenic |
| GACGACATCTTCAAATTCTT+GGG | 0.419923 | 3.2:+90349452 | None:intergenic |
| AGTCAAGTATCGGCCATGTC+GGG | 0.423301 | 3.2:+90349610 | None:intergenic |
| AGAGAGATCTTGCACGTTCA+AGG | 0.432109 | 3.2:-90352365 | MS.gene42253:CDS |
| GTGTATTACAATGAAGCTTC+TGG | 0.433261 | 3.2:-90352218 | MS.gene42253:CDS |
| ATCTGGTGCTGGTAATAATT+GGG | 0.444114 | 3.2:-90352081 | MS.gene42253:CDS |
| ACAACTGTGTCAGATACCTT+TGG | 0.444799 | 3.2:+90350101 | None:intergenic |
| GGAGGCACGGGTTCTGGCAT+GGG | 0.445967 | 3.2:-90350197 | MS.gene42253:CDS |
| GTCAATCAACTCAGCACCTT+CGG | 0.448375 | 3.2:+90352043 | None:intergenic |
| ACCTTCGGTATAATGACCTT+TGG | 0.450279 | 3.2:+90352058 | None:intergenic |
| GTCAATTGAACTCTGATCTC+AGG | 0.457782 | 3.2:-90349793 | MS.gene42253:CDS |
| TTGGTATACTGGGGAGGGAA+TGG | 0.459874 | 3.2:-90349336 | MS.gene42253:CDS |
| GAAGACGAGGGAATGGGATC+AGG | 0.462639 | 3.2:+90349756 | None:intergenic |
| CCACTCCCTTGGAGGAGGCA+CGG | 0.467869 | 3.2:-90350210 | MS.gene42253:CDS |
| ATCCAATTTGGTTACCGCAT+TGG | 0.468483 | 3.2:+90352339 | None:intergenic |
| CCTCCTCAGCTATTGCATCC+TGG | 0.470174 | 3.2:+90349249 | None:intergenic |
| AAAGTAAGCATCATTCTGTC+TGG | 0.471664 | 3.2:+90350140 | None:intergenic |
| CCAAATTGGATCCAAATTCT+GGG | 0.472580 | 3.2:-90352327 | MS.gene42253:CDS |
| AGAAGGTGAGGAACATTATG+AGG | 0.473711 | 3.2:-90349210 | MS.gene42253:CDS |
| GAGTCAGTTCCGGGACAGTA+AGG | 0.474292 | 3.2:+90349675 | None:intergenic |
| AGGTGGAAATGATACTCAAT+TGG | 0.476330 | 3.2:-90352252 | MS.gene42253:CDS |
| AGGAGGCACGGGTTCTGGCA+TGG | 0.476981 | 3.2:-90350198 | MS.gene42253:CDS |
| TACACTATCTGTCCACCAAC+TGG | 0.477941 | 3.2:-90350063 | MS.gene42253:CDS |
| TGATTTCTGCAACTATGAGC+GGG | 0.478950 | 3.2:-90349841 | MS.gene42253:CDS |
| GTATTTGGACAATCTGGTGC+TGG | 0.492783 | 3.2:-90352092 | MS.gene42253:CDS |
| GAGAATTGTGATTGCTTGCA+AGG | 0.495773 | 3.2:-90351990 | MS.gene42253:intron |
| TTTGCACCTCTCACTTCTCG+TGG | 0.496790 | 3.2:-90349716 | MS.gene42253:CDS |
| GAACACGGCATTGATCCAAC+TGG | 0.497409 | 3.2:-90352290 | MS.gene42253:CDS |
| AGTTGAGTTCCCAATAAAAG+TGG | 0.497826 | 3.2:+90349430 | None:intergenic |
| GAAGATGATTATGAAGAAGA+AGG | 0.502318 | 3.2:-90349227 | MS.gene42253:CDS |
| AAAAGTGAAGACGAGGGAAT+GGG | 0.507198 | 3.2:+90349750 | None:intergenic |
| GTGTCAGATACCTTTGGAGA+TGG | 0.509553 | 3.2:+90350107 | None:intergenic |
| TTGCATTGGTATACTGGGGA+GGG | 0.517335 | 3.2:-90349341 | MS.gene42253:CDS |
| CCGTGCCTCCTCCAAGGGAG+TGG | 0.517493 | 3.2:+90350210 | None:intergenic |
| GTTCTTATGGATCTTGAGCC+TGG | 0.519442 | 3.2:-90352173 | MS.gene42253:CDS |
| CTGATACTTTCCATGGTACC+AGG | 0.522407 | 3.2:+90352155 | None:intergenic |
| TGGGGAGGGAATGGATGAGA+TGG | 0.529822 | 3.2:-90349327 | MS.gene42253:CDS |
| GTTTGCCACTCCCTTGGAGG+AGG | 0.531497 | 3.2:-90350215 | MS.gene42253:CDS |
| ACCATGGAAAGTATCAGATC+TGG | 0.532094 | 3.2:-90352149 | MS.gene42253:CDS |
| GGAAAATATGTAAGCGAAGG+TGG | 0.533206 | 3.2:-90352269 | MS.gene42253:CDS |
| GAACTCTGATCTCAGGAAGC+TGG | 0.535008 | 3.2:-90349786 | MS.gene42253:CDS |
| TGTCAGATACCTTTGGAGAT+GGG | 0.536713 | 3.2:+90350108 | None:intergenic |
| GGATCTTGAGCCTGGTACCA+TGG | 0.537137 | 3.2:-90352165 | MS.gene42253:CDS |
| CAATTCAGGAGATGTTTAGG+AGG | 0.541715 | 3.2:-90349406 | MS.gene42253:CDS |
| CAGAACCCGTGCCTCCTCCA+AGG | 0.541892 | 3.2:+90350204 | None:intergenic |
| CAGTCAAGTATCGGCCATGT+CGG | 0.542390 | 3.2:+90349609 | None:intergenic |
| AGATCCATAAGAACTGCTCT+AGG | 0.542823 | 3.2:+90352182 | None:intergenic |
| AGAGGTGATACTTACAGCTA+GGG | 0.546469 | 3.2:+90349961 | None:intergenic |
| AATGGATGAGATGGAGTTCA+CGG | 0.548252 | 3.2:-90349318 | MS.gene42253:CDS |
| GGACGAAAGATCTTACCAAA+AGG | 0.548367 | 3.2:+90352125 | None:intergenic |
| GTATGTATCCCTTACTGTCC+CGG | 0.555378 | 3.2:-90349684 | MS.gene42253:CDS |
| TTGCACCTCTCACTTCTCGT+GGG | 0.556219 | 3.2:-90349715 | MS.gene42253:CDS |
| AGAAAATGCAGATGAGTGTA+TGG | 0.557071 | 3.2:-90350039 | MS.gene42253:CDS |
| CGGAACTGACTCAACAAATG+TGG | 0.558969 | 3.2:-90349664 | MS.gene42253:CDS |
| TTGCAGATGCAGTCAAGTAT+CGG | 0.563760 | 3.2:+90349600 | None:intergenic |
| GACATCTTCAAATTCTTGGG+TGG | 0.565762 | 3.2:+90349455 | None:intergenic |
| ACATCTTCAAATTCTTGGGT+GGG | 0.570008 | 3.2:+90349456 | None:intergenic |
| ACCAGATCTGATACTTTCCA+TGG | 0.574855 | 3.2:+90352148 | None:intergenic |
| TTTGCATTGGTATACTGGGG+AGG | 0.575042 | 3.2:-90349342 | MS.gene42253:CDS |
| CCAGGATGCAATAGCTGAGG+AGG | 0.575079 | 3.2:-90349249 | MS.gene42253:CDS |
| TGATTATGAAGAAGAAGGTG+AGG | 0.578671 | 3.2:-90349222 | MS.gene42253:CDS |
| GCTGGTAATAATTGGGCCAA+AGG | 0.579903 | 3.2:-90352074 | MS.gene42253:CDS |
| AGAACCCGTGCCTCCTCCAA+GGG | 0.582447 | 3.2:+90350205 | None:intergenic |
| AGATCAGAGTTCAATTGACC+AGG | 0.587313 | 3.2:+90349797 | None:intergenic |
| ACTGCATCTGCAATGTTCAG+AGG | 0.592344 | 3.2:-90349590 | MS.gene42253:CDS |
| AATTCAGGAGATGTTTAGGA+GGG | 0.594241 | 3.2:-90349405 | MS.gene42253:CDS |
| GTCAAGTATCGGCCATGTCG+GGG | 0.598025 | 3.2:+90349611 | None:intergenic |
| CTGATTTCTGCAACTATGAG+CGG | 0.598763 | 3.2:-90349842 | MS.gene42253:CDS |
| AGCAGAGTACCAACAATACC+AGG | 0.600651 | 3.2:-90349267 | MS.gene42253:CDS |
| GCGGGGTTACATGTTGTCTG+AGG | 0.600876 | 3.2:-90349823 | MS.gene42253:CDS |
| AGTCAGTTCCGGGACAGTAA+GGG | 0.601789 | 3.2:+90349676 | None:intergenic |
| GAAATGATACTCAATTGGAA+AGG | 0.601847 | 3.2:-90352247 | MS.gene42253:CDS |
| GGAACTGACTCAACAAATGT+GGG | 0.606867 | 3.2:-90349663 | MS.gene42253:CDS |
| ACAATGAAGCTTCTGGTGGT+AGG | 0.609506 | 3.2:-90352211 | MS.gene42253:CDS |
| GCCAAAGGTCATTATACCGA+AGG | 0.611568 | 3.2:-90352059 | MS.gene42253:CDS |
| TCATAGTTGCAGAAATCAGA+TGG | 0.613887 | 3.2:+90349846 | None:intergenic |
| CACGTTCAAGGTGGCCAATG+CGG | 0.629178 | 3.2:-90352353 | MS.gene42253:CDS |
| ACTGGAAAATATGTAAGCGA+AGG | 0.632683 | 3.2:-90352272 | MS.gene42253:CDS |
| TGTGCTGCTGATCCCCGACA+TGG | 0.635297 | 3.2:-90349623 | MS.gene42253:CDS |
| AGGAAAGATGAGCACCAAAG+AGG | 0.640000 | 3.2:-90349570 | MS.gene42253:CDS |
| TGAGACCCACGAGAAGTGAG+AGG | 0.646294 | 3.2:+90349710 | None:intergenic |
| ATTGATATCAAAGATTAGGG+AGG | 0.653042 | 3.2:-90350168 | MS.gene42253:CDS |
| GATTTCTGCAACTATGAGCG+GGG | 0.659247 | 3.2:-90349840 | MS.gene42253:CDS |
| ATACCAGGATGCAATAGCTG+AGG | 0.682886 | 3.2:-90349252 | MS.gene42253:CDS |
| GAGGTGATACTTACAGCTAG+GGG | 0.687744 | 3.2:+90349962 | None:intergenic |
| GAGGTGATATGCGATGAACA+CGG | 0.708035 | 3.2:-90352305 | MS.gene42253:CDS |
| GAGATCTTGCACGTTCAAGG+TGG | 0.713098 | 3.2:-90352362 | MS.gene42253:CDS |
| TATTACAATGAAGCTTCTGG+TGG | 0.730410 | 3.2:-90352215 | MS.gene42253:CDS |
| AATTGGATCCAAATTCTGGG+AGG | 0.748217 | 3.2:-90352324 | MS.gene42253:CDS |
| GGATGAGATGGAGTTCACGG+AGG | 0.764427 | 3.2:-90349315 | MS.gene42253:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTATTTATAAAAT+AGG | - | chr3.2:90350139-90350158 | MS.gene42253:CDS | 0.0% |
| !! | TCAATTATAAAAAAAAGTAA+AGG | + | chr3.2:90350564-90350583 | None:intergenic | 10.0% |
| !!! | AGAACTAATTTTTATAAAAA+TGG | - | chr3.2:90350420-90350439 | MS.gene42253:intron | 10.0% |
| !!! | CATAAAATCTATTTTTTTAA+AGG | - | chr3.2:90350525-90350544 | MS.gene42253:intron | 10.0% |
| !!! | GAAAAATAATAACTTTTTTT+TGG | + | chr3.2:90350243-90350262 | None:intergenic | 10.0% |
| !!! | AATAATGATGGTATATTTTA+GGG | - | chr3.2:90349971-90349990 | MS.gene42253:intron | 15.0% |
| !!! | TAATAATGATGGTATATTTT+AGG | - | chr3.2:90349970-90349989 | MS.gene42253:intron | 15.0% |
| !!! | TTTTTGTGTAATAATAATGA+TGG | - | chr3.2:90349959-90349978 | MS.gene42253:intron | 15.0% |
| !! | AAAAAGAACAATATATTTCG+TGG | + | chr3.2:90350799-90350818 | None:intergenic | 20.0% |
| !! | AATTCCAATGTTTGTAAAAA+TGG | + | chr3.2:90350712-90350731 | None:intergenic | 20.0% |
| !! | TACATTTCAAATGTTTGTTT+AGG | - | chr3.2:90350280-90350299 | MS.gene42253:intron | 20.0% |
| !! | TATTATTACACAAAAAGTCA+CGG | + | chr3.2:90349955-90349974 | None:intergenic | 20.0% |
| !! | TCTATTGATATCAAAGATTA+GGG | - | chr3.2:90351399-90351418 | MS.gene42253:intron | 20.0% |
| !!! | AAATTTCATTCAATTTTGTC+AGG | - | chr3.2:90351325-90351344 | MS.gene42253:intron | 20.0% |
| !!! | AATGGTTTTTTATGAATAGT+AGG | - | chr3.2:90350438-90350457 | MS.gene42253:intron | 20.0% |
| ! | AATAGAGAGAAAATCTTATG+TGG | - | chr3.2:90350976-90350995 | MS.gene42253:intron | 25.0% |
| ! | ATGCACTACTATAAAAGATA+AGG | + | chr3.2:90350114-90350133 | None:intergenic | 25.0% |
| ! | ATTCTTCATACTTTGTTGAA+TGG | - | chr3.2:90352056-90352075 | MS.gene42253:CDS | 25.0% |
| ! | CTCTATTGATATCAAAGATT+AGG | - | chr3.2:90351398-90351417 | MS.gene42253:intron | 25.0% |
| ! | GAAAAAAATCTGAATCAAAC+CGG | + | chr3.2:90350221-90350240 | None:intergenic | 25.0% |
| ! | TCATTCTGAGTACAAAATAT+AGG | + | chr3.2:90349927-90349946 | None:intergenic | 25.0% |
| ! | TCTACCAAAAAAAATAACCA+TGG | - | chr3.2:90350654-90350673 | MS.gene42253:intron | 25.0% |
| ! | TGATCTTTATGTTAGATTTG+TGG | - | chr3.2:90351266-90351285 | MS.gene42253:intron | 25.0% |
| ! | TGCCAAAAGAAAAATAATAC+CGG | + | chr3.2:90350632-90350651 | None:intergenic | 25.0% |
| ! | TTAAATAAAACATACCGACA+TGG | - | chr3.2:90350184-90350203 | MS.gene42253:CDS | 25.0% |
| ! | TTGATATGTCAGATATGATA+CGG | - | chr3.2:90349995-90350014 | MS.gene42253:CDS | 25.0% |
| ! | TTTGTAATATGTCACAGAAT+TGG | - | chr3.2:90351208-90351227 | MS.gene42253:intron | 25.0% |
| !! | AGAGGATCTAATTCAATTTT+TGG | - | chr3.2:90349830-90349849 | MS.gene42253:CDS | 25.0% |
| !! | GAGGATCTAATTCAATTTTT+GGG | - | chr3.2:90349831-90349850 | MS.gene42253:CDS | 25.0% |
| !! | GCTAATAGCTTTTCATTTTA+AGG | + | chr3.2:90350347-90350366 | None:intergenic | 25.0% |
| !!! | TTTTAAGAAAGTAGACTGAA+GGG | - | chr3.2:90350897-90350916 | MS.gene42253:intron | 25.0% |
| !!! | TTTTTAAGAAAGTAGACTGA+AGG | - | chr3.2:90350896-90350915 | MS.gene42253:intron | 25.0% |
| AATTTCGTATTTGGACAATC+TGG | - | chr3.2:90349472-90349491 | MS.gene42253:CDS | 30.0% | |
| ACAGATAGTGTAGCATTATA+TGG | + | chr3.2:90351499-90351518 | None:intergenic | 30.0% | |
| AGACAACCTTTGATTAATTG+AGG | + | chr3.2:90351647-90351666 | None:intergenic | 30.0% | |
| AGAGAGTAACATGAATGATT+TGG | - | chr3.2:90352279-90352298 | MS.gene42253:CDS | 30.0% | |
| AGTGTTTCTCAACAATAGAA+TGG | - | chr3.2:90351157-90351176 | MS.gene42253:intron | 30.0% | |
| ATTGATATCAAAGATTAGGG+AGG | - | chr3.2:90351402-90351421 | MS.gene42253:intron | 30.0% | |
| ATTGATTGTAGTCACAGAAA+TGG | - | chr3.2:90350579-90350598 | MS.gene42253:intron | 30.0% | |
| CACTACTATAAAAGATAAGG+TGG | + | chr3.2:90350111-90350130 | None:intergenic | 30.0% | |
| CAGAGGTTAATGATACATAA+AGG | - | chr3.2:90349748-90349767 | MS.gene42253:CDS | 30.0% | |
| CCAATGTTTGTAAAAATGGT+TGG | + | chr3.2:90350708-90350727 | None:intergenic | 30.0% | |
| CTCAATTGTGATTAATGTCT+TGG | - | chr3.2:90349628-90349647 | MS.gene42253:CDS | 30.0% | |
| GAAATGATACTCAATTGGAA+AGG | - | chr3.2:90349323-90349342 | MS.gene42253:CDS | 30.0% | |
| GAAGATGATTATGAAGAAGA+AGG | - | chr3.2:90352343-90352362 | MS.gene42253:CDS | 30.0% | |
| GTGTTTCTCAACAATAGAAT+GGG | - | chr3.2:90351158-90351177 | MS.gene42253:intron | 30.0% | |
| TACTTCAATTACTATACTGC+AGG | + | chr3.2:90349781-90349800 | None:intergenic | 30.0% | |
| TATATTTCGTGGATCTACAT+TGG | + | chr3.2:90350788-90350807 | None:intergenic | 30.0% | |
| TCAGTACCTCAATTAATCAA+AGG | - | chr3.2:90351638-90351657 | MS.gene42253:intron | 30.0% | |
| TGTCCAAATACGAAATTATC+AGG | + | chr3.2:90349469-90349488 | None:intergenic | 30.0% | |
| TGTTTCTCAACAATAGAATG+GGG | - | chr3.2:90351159-90351178 | MS.gene42253:intron | 30.0% | |
| TTGATTGTAGTCACAGAAAT+GGG | - | chr3.2:90350580-90350599 | MS.gene42253:intron | 30.0% | |
| ! | GAAACATGATGATGATTGAA+AGG | - | chr3.2:90350072-90350091 | MS.gene42253:CDS | 30.0% |
| ! | TACATTGGTTATTCTACAGA+TGG | + | chr3.2:90350773-90350792 | None:intergenic | 30.0% |
| !! | CCAACCATTTTTACAAACAT+TGG | - | chr3.2:90350705-90350724 | MS.gene42253:intron | 30.0% |
| !! | GACCGGTATTATTTTTCTTT+TGG | - | chr3.2:90350627-90350646 | MS.gene42253:intron | 30.0% |
| AAAGTAAGCATCATTCTGTC+TGG | + | chr3.2:90351433-90351452 | None:intergenic | 35.0% | |
| AATCGTCACGATTTCAATCA+TGG | + | chr3.2:90349728-90349747 | None:intergenic | 35.0% | |
| AATTCAGGAGATGTTTAGGA+GGG | - | chr3.2:90352165-90352184 | MS.gene42253:CDS | 35.0% | |
| ACACTAGACTTCACATTGTT+GGG | + | chr3.2:90352085-90352104 | None:intergenic | 35.0% | |
| ACATCTTCAAATTCTTGGGT+GGG | + | chr3.2:90352117-90352136 | None:intergenic | 35.0% | |
| ACCAAATTGGATCCAAATTC+TGG | - | chr3.2:90349242-90349261 | MS.gene42253:CDS | 35.0% | |
| ACCATAAAAAAGTGAAGACG+AGG | + | chr3.2:90351830-90351849 | None:intergenic | 35.0% | |
| ACTGGAAAATATGTAAGCGA+AGG | - | chr3.2:90349298-90349317 | MS.gene42253:CDS | 35.0% | |
| AGAAAATGCAGATGAGTGTA+TGG | - | chr3.2:90351531-90351550 | MS.gene42253:intron | 35.0% | |
| AGGTGGAAATGATACTCAAT+TGG | - | chr3.2:90349318-90349337 | MS.gene42253:CDS | 35.0% | |
| AGTTGAGTTCCCAATAAAAG+TGG | + | chr3.2:90352143-90352162 | None:intergenic | 35.0% | |
| ATACCGACATGGAGTATATA+GGG | - | chr3.2:90350195-90350214 | MS.gene42253:CDS | 35.0% | |
| ATTGTTGAGAAACACTTGTG+TGG | + | chr3.2:90351153-90351172 | None:intergenic | 35.0% | |
| CACTTTATGACATTTGCTTC+AGG | - | chr3.2:90351569-90351588 | MS.gene42253:intron | 35.0% | |
| CCAAATTGGATCCAAATTCT+GGG | - | chr3.2:90349243-90349262 | MS.gene42253:CDS | 35.0% | |
| CCATAAAAAAGTGAAGACGA+GGG | + | chr3.2:90351829-90351848 | None:intergenic | 35.0% | |
| CGTCCTGATAATTTCGTATT+TGG | - | chr3.2:90349463-90349482 | MS.gene42253:CDS | 35.0% | |
| CTCATTGTGTAATTGCAGTT+GGG | - | chr3.2:90351693-90351712 | MS.gene42253:intron | 35.0% | |
| CTTCAATTCAGGAGATGTTT+AGG | - | chr3.2:90352161-90352180 | MS.gene42253:CDS | 35.0% | |
| GAAAAATAATACCGGTCTGT+CGG | + | chr3.2:90350624-90350643 | None:intergenic | 35.0% | |
| GACGACATCTTCAAATTCTT+GGG | + | chr3.2:90352121-90352140 | None:intergenic | 35.0% | |
| GTGTATTACAATGAAGCTTC+TGG | - | chr3.2:90349352-90349371 | MS.gene42253:CDS | 35.0% | |
| TATTACAATGAAGCTTCTGG+TGG | - | chr3.2:90349355-90349374 | MS.gene42253:CDS | 35.0% | |
| TCATAGTTGCAGAAATCAGA+TGG | + | chr3.2:90351727-90351746 | None:intergenic | 35.0% | |
| TCATTGTGTAATTGCAGTTG+GGG | - | chr3.2:90351694-90351713 | MS.gene42253:intron | 35.0% | |
| TGATTATGAAGAAGAAGGTG+AGG | - | chr3.2:90352348-90352367 | MS.gene42253:CDS | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | - | chr3.2:90351120-90351139 | MS.gene42253:intron | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | + | chr3.2:90351139-90351120 | None:intergenic | 35.0% | |
| ! | GATTTGTTCATCAACCTCTT+TGG | + | chr3.2:90352017-90352036 | None:intergenic | 35.0% |
| ! | TCGCTTACATATTTTCCAGT+TGG | + | chr3.2:90349298-90349317 | None:intergenic | 35.0% |
| !! | AAGATGTCGTCCACTTTTAT+TGG | - | chr3.2:90352130-90352149 | MS.gene42253:CDS | 35.0% |
| !! | AATCTGGTGCTGGTAATAAT+TGG | - | chr3.2:90349488-90349507 | MS.gene42253:CDS | 35.0% |
| !! | AGATGTCGTCCACTTTTATT+GGG | - | chr3.2:90352131-90352150 | MS.gene42253:CDS | 35.0% |
| !! | ATCTGGTGCTGGTAATAATT+GGG | - | chr3.2:90349489-90349508 | MS.gene42253:CDS | 35.0% |
| !! | CCTTTTTGCATTGGTATACT+GGG | - | chr3.2:90352224-90352243 | MS.gene42253:CDS | 35.0% |
| !! | CTTTTTGCATTGGTATACTG+GGG | - | chr3.2:90352225-90352244 | MS.gene42253:CDS | 35.0% |
| !! | TTGAGGTACTGAAAAAGAAG+AGG | + | chr3.2:90351630-90351649 | None:intergenic | 35.0% |
| !!! | CAAGACCAAGAATTTTGGTT+TGG | - | chr3.2:90351000-90351019 | MS.gene42253:intron | 35.0% |
| !!! | CGTCTTCACTTTTTTATGGT+TGG | - | chr3.2:90351830-90351849 | MS.gene42253:intron | 35.0% |
| !!! | CGTGCCATGGTTATTTTTTT+TGG | + | chr3.2:90350661-90350680 | None:intergenic | 35.0% |
| AAAAAGTGAAGACGAGGGAA+TGG | + | chr3.2:90351824-90351843 | None:intergenic | 40.0% | |
| AAAAGTGAAGACGAGGGAAT+GGG | + | chr3.2:90351823-90351842 | None:intergenic | 40.0% | |
| AAGAGAGAAGAGAGAGAAGA+GGG | - | chr3.2:90351039-90351058 | MS.gene42253:intron | 40.0% | |
| AAGAGGTGATACTTACAGCT+AGG | + | chr3.2:90351613-90351632 | None:intergenic | 40.0% | |
| AATGGATGAGATGGAGTTCA+CGG | - | chr3.2:90352252-90352271 | MS.gene42253:CDS | 40.0% | |
| AATTGGATCCAAATTCTGGG+AGG | - | chr3.2:90349246-90349265 | MS.gene42253:CDS | 40.0% | |
| ACAACTGTGTCAGATACCTT+TGG | + | chr3.2:90351472-90351491 | None:intergenic | 40.0% | |
| ACCAGATCTGATACTTTCCA+TGG | + | chr3.2:90349425-90349444 | None:intergenic | 40.0% | |
| ACCTTCGGTATAATGACCTT+TGG | + | chr3.2:90349515-90349534 | None:intergenic | 40.0% | |
| AGAAGGTGAGGAACATTATG+AGG | - | chr3.2:90352360-90352379 | MS.gene42253:CDS | 40.0% | |
| AGAGGTGATACTTACAGCTA+GGG | + | chr3.2:90351612-90351631 | None:intergenic | 40.0% | |
| AGATCAGAGTTCAATTGACC+AGG | + | chr3.2:90351776-90351795 | None:intergenic | 40.0% | |
| AGATCCATAAGAACTGCTCT+AGG | + | chr3.2:90349391-90349410 | None:intergenic | 40.0% | |
| AGCAGCACACATCATATTCT+TGG | + | chr3.2:90351936-90351955 | None:intergenic | 40.0% | |
| AGCAGTTTACTGCAATGTTC+CGG | - | chr3.2:90352194-90352213 | MS.gene42253:CDS | 40.0% | |
| AGTAGTGTTACACAGAGCTA+TGG | - | chr3.2:90350929-90350948 | MS.gene42253:intron | 40.0% | |
| ATCCAATTTGGTTACCGCAT+TGG | + | chr3.2:90349234-90349253 | None:intergenic | 40.0% | |
| ATGGTCAAGGTTTCCTAACT+GGG | - | chr3.2:90350948-90350967 | MS.gene42253:intron | 40.0% | |
| CAAACCAAAATTCTTGGTCC+AGG | - | chr3.2:90351126-90351145 | MS.gene42253:intron | 40.0% | |
| CAATTCAGGAGATGTTTAGG+AGG | - | chr3.2:90352164-90352183 | MS.gene42253:CDS | 40.0% | |
| CACACTAGACTTCACATTGT+TGG | + | chr3.2:90352086-90352105 | None:intergenic | 40.0% | |
| CATACCGACATGGAGTATAT+AGG | - | chr3.2:90350194-90350213 | MS.gene42253:CDS | 40.0% | |
| CCAACTGCAATTACACAATG+AGG | + | chr3.2:90351695-90351714 | None:intergenic | 40.0% | |
| CCCAGAATTTGGATCCAATT+TGG | + | chr3.2:90349246-90349265 | None:intergenic | 40.0% | |
| CCCAGTATACCAATGCAAAA+AGG | + | chr3.2:90352227-90352246 | None:intergenic | 40.0% | |
| CCTCATTGTGTAATTGCAGT+TGG | - | chr3.2:90351692-90351711 | MS.gene42253:intron | 40.0% | |
| CCTGACTTTCTGTAGATCTT+GGG | - | chr3.2:90350050-90350069 | MS.gene42253:CDS | 40.0% | |
| CTATTGCATCCTGGTATTGT+TGG | + | chr3.2:90352315-90352334 | None:intergenic | 40.0% | |
| CTGATTTCTGCAACTATGAG+CGG | - | chr3.2:90351728-90351747 | MS.gene42253:intron | 40.0% | |
| GACATCTTCAAATTCTTGGG+TGG | + | chr3.2:90352118-90352137 | None:intergenic | 40.0% | |
| GAGAATTGTGATTGCTTGCA+AGG | - | chr3.2:90349580-90349599 | MS.gene42253:CDS | 40.0% | |
| GGAAAATATGTAAGCGAAGG+TGG | - | chr3.2:90349301-90349320 | MS.gene42253:CDS | 40.0% | |
| GGACGAAAGATCTTACCAAA+AGG | + | chr3.2:90349448-90349467 | None:intergenic | 40.0% | |
| GGACGACATCTTCAAATTCT+TGG | + | chr3.2:90352122-90352141 | None:intergenic | 40.0% | |
| GTCAATTGAACTCTGATCTC+AGG | - | chr3.2:90351777-90351796 | MS.gene42253:intron | 40.0% | |
| TATGGTCAAGGTTTCCTAAC+TGG | - | chr3.2:90350947-90350966 | MS.gene42253:intron | 40.0% | |
| TCCTGACTTTCTGTAGATCT+TGG | - | chr3.2:90350049-90350068 | MS.gene42253:CDS | 40.0% | |
| TCTCTATTGTTTGCCCAGTT+AGG | + | chr3.2:90350964-90350983 | None:intergenic | 40.0% | |
| TGATTTCTGCAACTATGAGC+GGG | - | chr3.2:90351729-90351748 | MS.gene42253:intron | 40.0% | |
| TGGGAACTCAACTTCAATTC+AGG | - | chr3.2:90352150-90352169 | MS.gene42253:CDS | 40.0% | |
| TGTTCCTAGAGCAGTTCTTA+TGG | - | chr3.2:90349384-90349403 | MS.gene42253:CDS | 40.0% | |
| TTGAAATCGTGACGATTCAG+AGG | - | chr3.2:90349731-90349750 | MS.gene42253:CDS | 40.0% | |
| TTGCAGATGCAGTCAAGTAT+CGG | + | chr3.2:90351973-90351992 | None:intergenic | 40.0% | |
| ! | ACATTTGTTGAGTCAGTTCC+GGG | + | chr3.2:90351907-90351926 | None:intergenic | 40.0% |
| ! | AGTATCAGATCTGGTCCTTT+TGG | - | chr3.2:90349430-90349449 | MS.gene42253:CDS | 40.0% |
| ! | ATGATGATTGAAAGGCATGC+AGG | - | chr3.2:90350080-90350099 | MS.gene42253:CDS | 40.0% |
| ! | CACATTTGTTGAGTCAGTTC+CGG | + | chr3.2:90351908-90351927 | None:intergenic | 40.0% |
| ! | CATCTGCATTTTCTACCAGT+TGG | + | chr3.2:90351525-90351544 | None:intergenic | 40.0% |
| ! | GGAACTGACTCAACAAATGT+GGG | - | chr3.2:90351907-90351926 | MS.gene42253:intron | 40.0% |
| ! | GTGCACTCTGAAAATTCTAG+AGG | - | chr3.2:90349812-90349831 | MS.gene42253:CDS | 40.0% |
| ! | GTGGTCAAGACCAAGAATTT+TGG | - | chr3.2:90350995-90351014 | MS.gene42253:intron | 40.0% |
| ! | TGTCAGATACCTTTGGAGAT+GGG | + | chr3.2:90351465-90351484 | None:intergenic | 40.0% |
| !! | ACCATGGAAAGTATCAGATC+TGG | - | chr3.2:90349421-90349440 | MS.gene42253:CDS | 40.0% |
| !! | GCCTTTTTGCATTGGTATAC+TGG | - | chr3.2:90352223-90352242 | MS.gene42253:CDS | 40.0% |
| !!! | CCCTCGTCTTCACTTTTTTA+TGG | - | chr3.2:90351826-90351845 | MS.gene42253:intron | 40.0% |
| !!! | CTGGACCAAGAATTTTGGTT+TGG | + | chr3.2:90351128-90351147 | None:intergenic | 40.0% |
| AAATAATACCGGTCTGTCGG+TGG | + | chr3.2:90350621-90350640 | None:intergenic | 45.0% | |
| AATGCAAAAAGGCTTTGCGC+CGG | + | chr3.2:90352216-90352235 | None:intergenic | 45.0% | |
| ACAATGAAGCTTCTGGTGGT+AGG | - | chr3.2:90349359-90349378 | MS.gene42253:CDS | 45.0% | |
| ACTGCATCTGCAATGTTCAG+AGG | - | chr3.2:90351980-90351999 | MS.gene42253:intron | 45.0% | |
| AGAGAGATCTTGCACGTTCA+AGG | - | chr3.2:90349205-90349224 | MS.gene42253:CDS | 45.0% | |
| AGGAAAGATGAGCACCAAAG+AGG | - | chr3.2:90352000-90352019 | MS.gene42253:CDS | 45.0% | |
| ATACCAGGATGCAATAGCTG+AGG | - | chr3.2:90352318-90352337 | MS.gene42253:CDS | 45.0% | |
| CCCAAGATCTACAGAAAGTC+AGG | + | chr3.2:90350053-90350072 | None:intergenic | 45.0% | |
| CTGATACTTTCCATGGTACC+AGG | + | chr3.2:90349418-90349437 | None:intergenic | 45.0% | |
| CTGTCGGTGGTTGTAATCAT+AGG | + | chr3.2:90350608-90350627 | None:intergenic | 45.0% | |
| GAAGAGAGAAGAGAGAGAAG+AGG | - | chr3.2:90351038-90351057 | MS.gene42253:intron | 45.0% | |
| GAGAGAAGAGAAGAGAGAGA+AGG | - | chr3.2:90351082-90351101 | MS.gene42253:intron | 45.0% | |
| GAGGTGATACTTACAGCTAG+GGG | + | chr3.2:90351611-90351630 | None:intergenic | 45.0% | |
| GAGGTGATATGCGATGAACA+CGG | - | chr3.2:90349265-90349284 | MS.gene42253:CDS | 45.0% | |
| GATTTCTGCAACTATGAGCG+GGG | - | chr3.2:90351730-90351749 | MS.gene42253:intron | 45.0% | |
| GCATATCACCTCCCAGAATT+TGG | + | chr3.2:90349257-90349276 | None:intergenic | 45.0% | |
| GCCAAAGGTCATTATACCGA+AGG | - | chr3.2:90349511-90349530 | MS.gene42253:CDS | 45.0% | |
| GCTGGTAATAATTGGGCCAA+AGG | - | chr3.2:90349496-90349515 | MS.gene42253:CDS | 45.0% | |
| GTATGTATCCCTTACTGTCC+CGG | - | chr3.2:90351886-90351905 | MS.gene42253:intron | 45.0% | |
| GTATTTGGACAATCTGGTGC+TGG | - | chr3.2:90349478-90349497 | MS.gene42253:CDS | 45.0% | |
| GTCAATCAACTCAGCACCTT+CGG | + | chr3.2:90349530-90349549 | None:intergenic | 45.0% | |
| GTTACACAGAGCTATGGTCA+AGG | - | chr3.2:90350935-90350954 | MS.gene42253:intron | 45.0% | |
| GTTAGTAACATCACGTGCCA+TGG | + | chr3.2:90350674-90350693 | None:intergenic | 45.0% | |
| GTTCTTATGGATCTTGAGCC+TGG | - | chr3.2:90349397-90349416 | MS.gene42253:CDS | 45.0% | |
| TACACTATCTGTCCACCAAC+TGG | - | chr3.2:90351507-90351526 | MS.gene42253:intron | 45.0% | |
| ! | ACATGTTGTCTGAGGTTTCC+TGG | - | chr3.2:90351755-90351774 | MS.gene42253:intron | 45.0% |
| ! | AGCAGAGTACCAACAATACC+AGG | - | chr3.2:90352303-90352322 | MS.gene42253:CDS | 45.0% |
| ! | ATGATTGAAAGGCATGCAGG+AGG | - | chr3.2:90350083-90350102 | MS.gene42253:CDS | 45.0% |
| ! | CGGAACTGACTCAACAAATG+TGG | - | chr3.2:90351906-90351925 | MS.gene42253:intron | 45.0% |
| ! | CTCTGTTTTCCCATCTCCAA+AGG | - | chr3.2:90351453-90351472 | MS.gene42253:intron | 45.0% |
| ! | CTGCATTTTCTACCAGTTGG+TGG | + | chr3.2:90351522-90351541 | None:intergenic | 45.0% |
| ! | GTGTCAGATACCTTTGGAGA+TGG | + | chr3.2:90351466-90351485 | None:intergenic | 45.0% |
| ! | TGATTGAAAGGCATGCAGGA+GGG | - | chr3.2:90350084-90350103 | MS.gene42253:CDS | 45.0% |
| ! | TGGACCTGGACCAAGAATTT+TGG | + | chr3.2:90351133-90351152 | None:intergenic | 45.0% |
| ! | TTGCATTGGTATACTGGGGA+GGG | - | chr3.2:90352229-90352248 | MS.gene42253:CDS | 45.0% |
| ! | TTTGCATTGGTATACTGGGG+AGG | - | chr3.2:90352228-90352247 | MS.gene42253:CDS | 45.0% |
| !! | TTTCAAGTTTGCCACTCCCT+TGG | - | chr3.2:90351349-90351368 | MS.gene42253:intron | 45.0% |
| AGTCAGTTCCGGGACAGTAA+GGG | + | chr3.2:90351897-90351916 | None:intergenic | 50.0% | |
| CGACATGGAGTATATAGGGC+CGG | - | chr3.2:90350199-90350218 | MS.gene42253:CDS | 50.0% | |
| CGGCCCTATATACTCCATGT+CGG | + | chr3.2:90350201-90350220 | None:intergenic | 50.0% | |
| GAACTCTGATCTCAGGAAGC+TGG | - | chr3.2:90351784-90351803 | MS.gene42253:intron | 50.0% | |
| GAGAAACACTTGTGTGGACC+TGG | + | chr3.2:90351147-90351166 | None:intergenic | 50.0% | |
| GAGATCTTGCACGTTCAAGG+TGG | - | chr3.2:90349208-90349227 | MS.gene42253:CDS | 50.0% | |
| GATTACAACCACCGACAGAC+CGG | - | chr3.2:90350610-90350629 | MS.gene42253:intron | 50.0% | |
| GGCCAATGCGGTAACCAAAT+TGG | - | chr3.2:90349229-90349248 | MS.gene42253:CDS | 50.0% | |
| TTGCACCTCTCACTTCTCGT+GGG | - | chr3.2:90351855-90351874 | MS.gene42253:intron | 50.0% | |
| TTGGTATACTGGGGAGGGAA+TGG | - | chr3.2:90352234-90352253 | MS.gene42253:CDS | 50.0% | |
| TTTGCACCTCTCACTTCTCG+TGG | - | chr3.2:90351854-90351873 | MS.gene42253:intron | 50.0% | |
| ! | GGCGCAAAGCCTTTTTGCAT+TGG | - | chr3.2:90352215-90352234 | MS.gene42253:CDS | 50.0% |
| !! | AGTCAAGTATCGGCCATGTC+GGG | + | chr3.2:90351963-90351982 | None:intergenic | 50.0% |
| !! | CAGTCAAGTATCGGCCATGT+CGG | + | chr3.2:90351964-90351983 | None:intergenic | 50.0% |
| !! | GAACACGGCATTGATCCAAC+TGG | - | chr3.2:90349280-90349299 | MS.gene42253:CDS | 50.0% |
| CAAGTTTGCCACTCCCTTGG+AGG | - | chr3.2:90351352-90351371 | MS.gene42253:intron | 55.0% | |
| CACGTTCAAGGTGGCCAATG+CGG | - | chr3.2:90349217-90349236 | MS.gene42253:CDS | 55.0% | |
| CCAGGATGCAATAGCTGAGG+AGG | - | chr3.2:90352321-90352340 | MS.gene42253:CDS | 55.0% | |
| CCTCCTCAGCTATTGCATCC+TGG | + | chr3.2:90352324-90352343 | None:intergenic | 55.0% | |
| GAAGACGAGGGAATGGGATC+AGG | + | chr3.2:90351817-90351836 | None:intergenic | 55.0% | |
| GAGTCAGTTCCGGGACAGTA+AGG | + | chr3.2:90351898-90351917 | None:intergenic | 55.0% | |
| GCGGGGTTACATGTTGTCTG+AGG | - | chr3.2:90351747-90351766 | MS.gene42253:intron | 55.0% | |
| GGATCTTGAGCCTGGTACCA+TGG | - | chr3.2:90349405-90349424 | MS.gene42253:CDS | 55.0% | |
| GGATGAGATGGAGTTCACGG+AGG | - | chr3.2:90352255-90352274 | MS.gene42253:CDS | 55.0% | |
| TGAGACCCACGAGAAGTGAG+AGG | + | chr3.2:90351863-90351882 | None:intergenic | 55.0% | |
| TGGGGAGGGAATGGATGAGA+TGG | - | chr3.2:90352243-90352262 | MS.gene42253:CDS | 55.0% | |
| !! | GTCAAGTATCGGCCATGTCG+GGG | + | chr3.2:90351962-90351981 | None:intergenic | 55.0% |
| AGAACCCGTGCCTCCTCCAA+GGG | + | chr3.2:90351368-90351387 | None:intergenic | 60.0% | |
| GTTTGCCACTCCCTTGGAGG+AGG | - | chr3.2:90351355-90351374 | MS.gene42253:intron | 60.0% | |
| ! | TGTGCTGCTGATCCCCGACA+TGG | - | chr3.2:90351947-90351966 | MS.gene42253:intron | 60.0% |
| CAGAACCCGTGCCTCCTCCA+AGG | + | chr3.2:90351369-90351388 | None:intergenic | 65.0% | |
| CCACTCCCTTGGAGGAGGCA+CGG | - | chr3.2:90351360-90351379 | MS.gene42253:intron | 65.0% | |
| ! | AGGAGGCACGGGTTCTGGCA+TGG | - | chr3.2:90351372-90351391 | MS.gene42253:intron | 65.0% |
| ! | CACTCCCTTGGAGGAGGCAC+GGG | - | chr3.2:90351361-90351380 | MS.gene42253:intron | 65.0% |
| ! | CTTGGAGGAGGCACGGGTTC+TGG | - | chr3.2:90351367-90351386 | MS.gene42253:intron | 65.0% |
| ! | GGAGGCACGGGTTCTGGCAT+GGG | - | chr3.2:90351373-90351392 | MS.gene42253:intron | 65.0% |
| CCGTGCCTCCTCCAAGGGAG+TGG | + | chr3.2:90351363-90351382 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 90349202 | 90352390 | 90349202 | ID=MS.gene42253 |
| chr3.2 | mRNA | 90349202 | 90352390 | 90349202 | ID=MS.gene42253.t1;Parent=MS.gene42253 |
| chr3.2 | exon | 90351991 | 90352390 | 90351991 | ID=MS.gene42253.t1.exon1;Parent=MS.gene42253.t1 |
| chr3.2 | CDS | 90351991 | 90352390 | 90351991 | ID=cds.MS.gene42253.t1;Parent=MS.gene42253.t1 |
| chr3.2 | exon | 90349976 | 90350245 | 90349976 | ID=MS.gene42253.t1.exon2;Parent=MS.gene42253.t1 |
| chr3.2 | CDS | 90349976 | 90350245 | 90349976 | ID=cds.MS.gene42253.t1;Parent=MS.gene42253.t1 |
| chr3.2 | exon | 90349202 | 90349881 | 90349202 | ID=MS.gene42253.t1.exon3;Parent=MS.gene42253.t1 |
| chr3.2 | CDS | 90349202 | 90349881 | 90349202 | ID=cds.MS.gene42253.t1;Parent=MS.gene42253.t1 |
| Gene Sequence |
| Protein sequence |
